Gifsy-2 prophage probable tail assembly protein [Phage Gifsy-2].

LOCUS       NP_460021                245 aa            linear   CON 08-SEP-2022
ACCESSION   NP_460021
VERSION     NP_460021.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Phage Gifsy-2
  ORGANISM  Phage Gifsy-2
            Viruses; unclassified bacterial viruses.
REFERENCE   1  (residues 1 to 245)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 245)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 245)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 245)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL19980.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..245
                     /organism="Phage Gifsy-2"
                     /db_xref="taxon:129862"
     Protein         1..245
                     /product="Gifsy-2 prophage probable tail assembly protein"
                     /calculated_mol_wt=27905
     Region          1..106
                     /region_name="MPN_NLPC_P60"
                     /note="Mpr1p, Pad1p N-terminal (MPN) domains with
                     catalytic isopeptidase activity (metal-binding) found in
                     proteins also containing NlpC/P60 domains; cd08073"
                     /db_xref="CDD:163704"
     Site            order(17,66,68,76,79)
                     /site_type="active"
                     /note="MPN+ (JAMM) motif [active]"
                     /db_xref="CDD:163704"
     Site            order(66,68,79)
                     /site_type="other"
                     /note="Zinc-binding site [ion binding]"
                     /db_xref="CDD:163704"
     Region          109..222
                     /region_name="NLPC_P60"
                     /note="NlpC/P60 family; cl21534"
                     /db_xref="CDD:473902"
     CDS             1..245
                     /locus_tag="STM1046"
                     /coded_by="NC_003197.2:1131369..1132106"
                     /transl_table=11
                     /db_xref="GeneID:1252564"
CONTIG      join(WP_000606351.1:1..245)
ORIGIN      
        1 minddilaha rqcapaescg yvvrtaqger yfpcenlsae ptmyfrispe dylnarnrgd
       61 ivalvhshpd gkpclssadr tlqiqsgldw wlvcdnrihk frcvphltgr qfehgvtdcy
      121 tlfrdayhla gidmpdfdre ddwwsqgksl yldhleaagf yrvnpedaqp gdvliccfgs
      181 ptpnhaaiyc gngellhhip eqlskregyn dkwqrrthsi wrhrqwcesa ftgiyndles
      241 asasa