Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_460610 1174 aa linear CON 08-SEP-2022 subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_460610 VERSION NP_460610.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1174) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1174) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1174) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1174) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20569. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1174 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1174 /product="putative pyruvate-flavodoxin oxidoreductase" /EC_number="1.2.7.1" /calculated_mol_wt=128449 Region 1..1166 /region_name="pyruv_ox_red" /note="pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; TIGR02176" /db_xref="CDD:131231" CDS 1..1174 /gene="nifJ" /locus_tag="STM1651" /coded_by="NC_003197.2:1742119..1745643" /note="similar to E. coli putative oxidoreductase, Fe-S subunit (AAC74460.1); Blastp hit to AAC74460.1 (1174 aa), 92% identity in aa 1 - 1174" /transl_table=11 /db_xref="GeneID:1253169" CONTIG join(WP_001193265.1:1..1174) ORIGIN 1 mqtidgngav asvafrtsev iaiypitpss tmaeqadawa gnglknvwgd tprvvemqse 61 ggaiaavhga lqtgslstsf tssqglllmi ptlyklagql tpfvlhvaar tvathalsif 121 gdhsdvmavr qtgcamlcaa svqeaqdfal iahratlksr vpfihffdgf rtsheinkii 181 pltnetilnl mpqaeidahr aralnpehpv irgtsanpdt yfqsreatnp wynavydhve 241 eamkafgdat grqyqpfeyy ghpqaervii mmgsalgtce evvdellirg ekvgvlkvrl 301 frpfsakhll qalpetvrai avldrtkepg aqaeplyldv mtalaeafnn geretlprti 361 ggryglsske fgpacvlavf nelsrakpkp rftvgiyddv tnlslplpen tlpgsaklea 421 lfyglgsdgs vsatknniki ignstpwyaq gyfvydskka ggltvshlrv sekpirsayl 481 iaqadfvgch qlqfidkyqm aerlkpggif llntpysade vwsrlpqevq avlnqkkarf 541 yvvnaakiar ecglgarint vmqmaffhlt hilpgdsalv elqgaiaksy sskgqdlver 601 nwqalalaqe slaevplqav nphsahrppv vsdaapdfvk tvtaamlagl gdalpvsalp 661 pdgtwpmgtt rwekrniaee ipvwkeelct qcnhcvaacp hsairakvvs pqamenapas 721 lhsldvksrd mrgqkyvlqv apedctgcnl cvevcpakdr qdpqikainm msrlehveee 781 kvnydffldl peierskler idirtsqlit plfeysgacs gcgetpyikl ltqlygdrml 841 ianatgcssi yggnlpstpy ttdangrgpa wanslfedna efglgfrlsv dqhrarvmrl 901 laqfadripa elndalhaea tpdvrreqva alrqhlksva gaeellkdad alveksiwli 961 ggdgwaydig fggldhvlsl tenvnilvld tqcysntggq askatplgav tkfgehgkrk 1021 arkdlgvsmm myghvyvaqi slgaqlnqtv kaiqeaeawp gpsliiaysp ceehgydlal 1081 shdqmrqlta tgfwplyrfd prradegkpp laldsrppsd alaetllneq rfrrlnaqqp 1141 evaeqlwrda aldlqkrydf lallagkaek pgad