Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_459470 1049 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_459470 VERSION NP_459470.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1049) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1049) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1049) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1049) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19429. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1049 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1049 /product="RND family, acridine efflux pump" /calculated_mol_wt=113479 Region 1..1048 /region_name="PRK15127" /note="multidrug efflux RND transporter permease subunit AcrB" /db_xref="CDD:185081" CDS 1..1049 /gene="acrB" /locus_tag="STM0475" /coded_by="complement(NC_003197.2:529250..532399)" /note="similar to E. coli acridine efflux pump (AAC73564.1); Blastp hit to AAC73564.1 (1049 aa), 94% identity in aa 1 - 1048" /transl_table=11 /db_xref="GeneID:1251995" CONTIG join(WP_001132508.1:1..1049) ORIGIN 1 mpnffidrpi fawviaiiim lagglailkl pvaqyptiap pavtisatyp gadaktvqdt 61 vtqvieqnmn gidnlmymss nsdstgtvqi tltfesgtda diaqvqvqnk lqlampllpq 121 evqqqgvsve kssssflmvv gvintdgtmt qedisdyvaa nmkdpisrts gvgdvqlfgs 181 qyamriwmnp teltkyqltp vdvinaikaq naqvaagqlg gtppvkgqql nasiiaqtrl 241 tstdefgkil lkvnqdgsqv rlrdvakiel ggenydviak fngqpasglg iklatganal 301 dtatairael kkmepffppg mkivypydtt pfvkisihev vktlveaiil vflvmylflq 361 nfratlipti avpvvllgtf avlaafgfsi ntltmfgmvl aigllvddai vvvenvervm 421 teeglppkea trksmgqiqg alvgiamvls avfipmaffg gstgaiyrqf sitivsamal 481 svlvaliltp alcatmlkpv akgdhgegkk gffgwfnrlf dksthhytds vgnilrstgr 541 ylllyliivv gmaylfvrlp ssflpdedqg vfltmvqlpa gatqertqkv ldevtdyyln 601 kekanvesvf avngfgfagr gqntgiafvs lkdwadrpge knkveaitqr ataafsqikd 661 amvfafnlpa ivelgtatgf dfelidqagl ghekltqarn qlfgevakyp dllvgvrpng 721 ledtpqfkid idqekaqalg vsisdinttl gaawggsyvn dfidrgrvkk vyvmseakyr 781 mlpddindwy vrgsdgqmvp fsafsssrwe ygsprleryn glpsmeilgq aapgkstgea 841 mammeelask lpsgigydwt gmsyqerlsg nqapalyais livvflclaa lyeswsipfs 901 vmlvvplgvi gallaatfrg ltndvyfqvg llttiglsak nailivefak dlmdkegkgl 961 veatleavrm rlrpilmtsl afmlgvmplv issgagsgaq navgtgvlgg mvtatvlaif 1021 fvpvffvvvr rrfsrksedi ehshstehr