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LOCUS NP_462266 422 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_462266 VERSION NP_462266.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 422) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 422) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 422) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 422) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22225. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..422 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..422 /product="putative cation transporter" /calculated_mol_wt=43902 Region 8..418 /region_name="SLC13_permease" /note="Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is...; cd01115" /db_xref="CDD:238535" Site order(15..18,25..38,53..70,93..109,111..128,132..155, 176..190,227..239,245..259,274..292,318..333,351..370, 400..412) /site_type="other" /note="transmembrane helices" /db_xref="CDD:238535" CDS 1..422 /locus_tag="STM3356" /coded_by="complement(NC_003197.2:3523803..3525071)" /note="similar to E. coli putative transport protein (AAC75352.1); Blastp hit to AAC75352.1 (610 aa), 38% identity in aa 9 - 199, 34% identity in aa 441 - 610, 23% identity in aa 35 - 196, 22% identity in aa 425 - 594" /transl_table=11 /db_xref="GeneID:1254879" CONTIG join(WP_000433394.1:1..422) ORIGIN 1 mepitltlcl lvfaivmfvw ekvplavtsm ivcvalvitg vlnikqafag fidtnvilfv 61 amfivggalf etgmankvgg vitrfaktek qliftimvvv glmsgvlsnt gtaavlipvv 121 igvaaksgfs rsrllmplvf aaalggnlsl igapgnliaq salqnigggf gffeyakigl 181 pmlicgilyf ltigyrflpn natggevgsv gvqrdyshvp qwkqrlslvv liatilgmif 241 ekkigvslav tgcigalvlv vsgvltekqa ykaidsqtif ifggtlalak alemtgagkl 301 vadyvigmlg qnsspfmlli avfalsvvmt nfmsntatta llvpvslsia agmgadprav 361 lmatviggsc ayatpigmpa nmmvlsaggy kfvdyakagi pliivstivs lillpilfpf 421 hp