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LOCUS NP_462381 1953 aa linear CON 08-SEP-2022 subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_462381 VERSION NP_462381.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1953) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1953) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1953) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1953) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22340. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1953 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1953 /product="putative surface-exposed virulence protein" /calculated_mol_wt=200020 Region 4..1953 /region_name="auto_BigA" /note="autotransporter adhesin BigA; NF033178" /db_xref="CDD:467981" Region <83..>221 /region_name="PHA03169" /note="hypothetical protein; Provisional" /db_xref="CDD:223003" CDS 1..1953 /gene="bigA" /locus_tag="STM3478" /coded_by="NC_003197.2:3629175..3635036" /note="putative surface-exposed virulence protein BigA (gi|5081595)" /transl_table=11 /db_xref="GeneID:1255001" CONTIG join(WP_010989077.1:1..1953) ORIGIN 1 mnpmqkkkli siaialtlqs yyipaiaaen nddekecpsn isslpkekra klsptclatp 61 endnhwgwva ggvaalvagv aigvennggg dsnhsytppk pdnggdvtpp ddggnvtppd 121 dggnvtppdd ggddnvtppd dsgdddvapp ddsgdddvtp pddsgdddvt ppddsgdgdv 181 tppddsgddd vtppddsgdd dvtppddsgd ddvtppddsg dddvtppdds gdddvtppdd 241 sgddddtppd dsvitfsngv tidkgkdtlt fdsfkldngs vlegavwnys eqdnqwqltt 301 adgktlnvtg wdvtdanaav iegtqengly wkydsrgyli iaddnttvis gddqahnsdr 361 gmdisgqdrt gviisgdrtv ntltgdssvt dgatgmvisg dgttntisgh stvdnatgal 421 isgngtttnf agdiavsggg taiiidgdna tikntgtsdi sgagstgtvi dgnnarvnnd 481 gdmtitdggt gghitgdnvv idnagsttvs gadatalyie gdnalvineg nqtisggavg 541 tridgddaht tntgdiavdg agsaaviing dngsltqagd llvtdgamgi itygtgneak 601 ntgnatvrda dsvgfvvage kntfknkgdi dvslngtgal vsgdmsqvtl dgdinvvsvq 661 dsegvfssat gvsvsgdsna vditgnvnis adygqddlaa gappltgvvv ggngntvtln 721 galniddndl satggqyldv vglsvtgddn dveidggini thsedpldgt saditgisvs 781 gnstvtlngh stidtntvvg ghvvlarvnn ggslilgdds vvdvnvsyip tgyytynall 841 madgegtsie nkgditshgv ysviradngs evsnsgdilv yatssnssed raaitrasge 901 gsavhnkagg ditlisdqtp qgsggievyp lkwythtfya mmasdygdvv ndegatihlq 961 gagvygvtas rgkalnegni yldglvptld dennitstsy wqpsslylts sgmvagstda 1021 dgdataintg nitvnnagfg mmalnggtai nqgvitltad dgvtgqadel vgmaalnggv 1081 vindtsgvin idadygqafl sdsssyiinn gsinlngspm ddtdshmggt ptdkiwiqsl 1141 pgsgdsdtrt sdtgfftagt lanygtetln gdvdvnggwl yneagasltv ngtvtingga 1201 nalanygtld adaistwhsl fneadgsitt dlltlngdvt fynngdftgs iagtsyqqei 1261 vntgdmtvae dgkslvsgsf yfyneedatl tnsgsavegg entiinltra ndsltqvnsg 1321 titatngysa ittvngsndp kwiwntatgv inginpdapl inlgrgynfg nqgtinvqgd 1381 navaisggts syvinlvnsg tinvgteqgk edgtngtgli gikgngnatt inntadgvin 1441 vyaddsyafg gktkaiinng einllcdsgc diyapgttgt qndhngtadi vipdattapt 1501 egsiptppad pnapqqlsny ivgtnadgss gtlkannlvi gdnvkvdtgf tsgtadttvv 1561 vdnaftgsni qgadnitsts vvwnaqgsqd adgnvdvtmt knayadvatd ssvsdvaqal 1621 dagytnnely tslnvgttae lnsalkqvsg aqattvfrea rvlsnrftml adaapqikdg 1681 lafnvvakgd praelgndtq ydmlalrqtl dltasqnltl eygiarldgd gsktagdngl 1741 tggysqffgl khsmafdegl awnnslrydv hnldssrsva ygdvnkiads dmrqqylefr 1801 segaktftmm gdalkvtpya gvkfrhtmed gykersagdf nlsmnsgnet avdsivglkl 1861 dyagkdgwsa tatleggpnl sysksqrtas lqgaagqsfg vddgqkgggv nglatigvky 1921 ssndtalhld ayqwkedgis dkgfmlnvkk tfr