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LOCUS NP_460600 1300 aa linear CON 08-SEP-2022 Typhimurium str. LT2]. ACCESSION NP_460600 VERSION NP_460600.3 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1300) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1300) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1300) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1300) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20559. On Oct 24, 2012 this sequence version replaced NP_460600.2. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1300 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1300 /product="ATP-dependent helicase" /calculated_mol_wt=148581 Region 5..1298 /region_name="PRK11131" /note="ATP-dependent RNA helicase HrpA; Provisional" /db_xref="CDD:182986" CDS 1..1300 /gene="hrpA" /locus_tag="STM1641" /coded_by="complement(NC_003197.2:1731328..1735230)" /note="similar to E. coli helicase, ATP-dependent (AAC74495.1); Blastp hit to AAC74495.1 (1281 aa), 95% identity in aa 1 - 1280" /transl_table=11 /db_xref="GeneID:1253159" CONTIG join(WP_000139701.1:1..1300) ORIGIN 1 mteqstltlq vlqqrldalm lrdkqrfarr lhgvkkvknp daqqaifqtm akeieqaaaq 61 valreaarps itypqnlpvs qkkqdileai rdhqvvivag etgsgkttql pkicmelgrg 121 ikglightqp rrlaartvan riaeelqtep ggcigykvrf sdhvssntmv klmtdgilla 181 eiqqdrllmq ydtliideah erslnidfll gylkellprr pdlkviitsa tidperfsrh 241 fnnapiievs grtypvevry rpiveeaddt erdqlqaifd avdelgresp gdilifmsge 301 reirdtadal nklnlrhtev lplyarlsns eqnrvfqshs grrivlatnv aetsltvpgi 361 kyvidpgtar isrysyrtkv qrlpiepisq asanqrkgrc grvsegicir lyseddflsr 421 peftdpeilr tnlasvilqm talglgdiaa fpfveapdkr niqdgvrlle elgaitadeq 481 qtaykltplg rqlsqlpvdp rlarmvleaq khgcvreami itsalsiqdp rerpvdkqqa 541 sdekhrrfhd kesdflafvn lwnylgeqqk alssnqfrrl crtdylnylr vrewqdiytq 601 lrqvvkelgi pvnsepaeyr eihvalltgl lshigmkdad kqeytgarna rfsifpgsgl 661 fkkppkwtmv aelvetsrlw griaariepe wvepvaqhli krsysephwe raqgavmate 721 kvtvyglpiv aarkvnysqi dpalcrelfi rhalvegdwq trhaffrenl klraeveele 781 hksrrrdilv dddtlfefyd qrishdvisa rhfdswwkki sretpdllnf eksmlikega 841 ekiskldypn fwhqgnlklr lsyqfepgad adgvtvhipl pllnqvdesg fewqipglrr 901 elvialiksl pkpvrrnfvp apnyaeaflg rvtplelpll dalerelrrm tgvtvdredw 961 hwdqvpehlk itfrvvndkn kklqegrsla elknalkgkv qetlsavadd gieqsglhiw 1021 sfgelpesye qkrgnykvka wpalvderds vaiklfdnpl eqqqamwcgl rrllllnips 1081 pikylheklp nkaklglyfn pygkvlelid dciacgvdkl idanggpvws eagftalhek 1141 vraelndtvv diakqveril ttvfninkrl kgrvdmsmal glsdikaqms glvyrgfvtg 1201 ngfkrlgdtl rylqaiekrl eklavdphrd raqmlkvesv qqawqqwink lpparreddd 1261 vkeirwmiee lrvsyfaqql gtpypisdkr ilqamdqita