Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_461990 225 aa linear CON 08-SEP-2022 subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_461990 VERSION NP_461990.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 225) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 225) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 225) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 225) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21949. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..225 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..225 /product="putative ABC-type cobalt transport system" /calculated_mol_wt=24809 Region 2..>44 /region_name="SbcC" /note="DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; COG0419" /db_xref="CDD:440188" Region 30..219 /region_name="ABC_cobalt_CbiO_domain1" /note="First domain of the ATP-binding cassette component of cobalt transport system; cd03225" /db_xref="CDD:213192" Site 35..42 /site_type="other" /note="Walker A/P-loop" /db_xref="CDD:213192" Site order(38..39,41..43,88,167..168,200) /site_type="other" /note="ATP binding site [chemical binding]" /db_xref="CDD:213192" Site 85..88 /site_type="other" /note="Q-loop/lid" /db_xref="CDD:213192" Site 143..152 /site_type="other" /note="ABC transporter signature motif" /db_xref="CDD:213192" Site 163..168 /site_type="other" /note="Walker B" /db_xref="CDD:213192" Site 171..174 /site_type="other" /note="D-loop" /db_xref="CDD:213192" Site 196..202 /site_type="other" /note="H-loop/switch region" /db_xref="CDD:213192" CDS 1..225 /locus_tag="STM3074" /coded_by="NC_003197.2:3235028..3235705" /note="ATPase component; similar to E. coli ATP-binding component of putrescine transport system (AAC73942.1); Blastp hit to AAC73942.1 (404 aa), 38% identity in aa 74 - 207" /transl_table=11 /db_xref="GeneID:1254597" CONTIG join(WP_001520421.1:1..225) ORIGIN 1 mvtleqfryl psdatrppac fdfhystpgi vaivgdngsg kstlaqlmag wypdylpgdi 61 dgtglllgvp igrlplveqs ptiqlvqqsp ylqlsgctfs veeevafgpe nlglheaeil 121 rridealtlt ncqslrhrhp gtlsggetqr vviasalamq prllildeaf srltsaatgm 181 llerlqqwal erhslivlfe rnhfpfltrc qrvwqlrdga ltplc