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LOCUS NP_462002 658 aa linear CON 08-SEP-2022 Typhimurium str. LT2]. ACCESSION NP_462002 VERSION NP_462002.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 658) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 658) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 658) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 658) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21961. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..658 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..658 /product="arginine decarboxylase" /EC_number="4.1.1.19" /calculated_mol_wt=73702 Region 22..658 /region_name="PRK05354" /note="biosynthetic arginine decarboxylase" /db_xref="CDD:235427" Site order(86,127,150..151,153..154,177,197,201,205,241..244, 377..379,479,484,486,488,491,525,527..529,531,571..573, 576..578) /site_type="other" /note="dimer interface [polypeptide binding]" /db_xref="CDD:143503" Site order(125,127,148,172,222,272,275,311..312,360..363, 528..529,568,572,576) /site_type="active" /db_xref="CDD:143503" Site order(125,127,148,172,222,272,275,311..312,360..363,528, 568) /site_type="other" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]" /db_xref="CDD:143503" Site order(127,528) /site_type="active" /note="catalytic residues [active]" /db_xref="CDD:143503" Site order(275,363,528..529,568,572,576) /site_type="other" /note="substrate binding site [chemical binding]" /db_xref="CDD:143503" CDS 1..658 /gene="speA" /locus_tag="STM3086" /coded_by="complement(NC_003197.2:3248933..3250909)" /note="similar to E. coli biosynthetic arginine decarboxylase (AAC75975.1); Blastp hit to AAC75975.1 (658 aa), 97% identity in aa 1 - 658" /transl_table=11 /db_xref="GeneID:1254609" CONTIG join(WP_001278580.1:1..658) ORIGIN 1 msddmsmgsp ssageqgvlr smqevamssq easkmlrtyn iawwgnnyyd vnelghisvc 61 pdpdvpearv dlaklvkare aqgqrlpalf cfpqilqhrl rsinaafkra resygyngdy 121 flvypikvnq hrrvieslih sgeplgleag skaelmavla hagmtrsviv cngykdreyi 181 rlaligekmg hkvylviekm seiaivleea erlnvvprlg vrarlasqgs gkwqssggek 241 skfglaatqv lqlvetlrda grldslqllh fhlgsqmani rdiatgvres arfyvelhkl 301 gvniqcfdvg gglgvdyegt rsqsdcsvny glneyannii waigdaceeh glphptvite 361 sgravtahht vlvsniigve rneytdptap aedapralqn lwetwqemhk pgtrrslrew 421 lhdsqmdlhd ihigyssgaf slqerawaeq lylsmchevq kqldpqnrah rpiidelqer 481 madkmyvnfs lfqsmpdawg idqlfpvlpl egldqvperr avllditcds dgaidhyidg 541 dgiattmpmp eydpenppml gffmvgayqe ilgnmhnlfg dteavdvfvf pdgsvevels 601 degdtvadml qyvqldpktl lthfrdqvkq tdlddalqqq fleefeagly gytylede