Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_461525 1120 aa linear CON 08-SEP-2022 ACCESSION NP_461525 VERSION NP_461525.2 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Phage Gifsy-1 ORGANISM Phage Gifsy-1 Viruses; unclassified bacterial viruses. REFERENCE 1 (residues 1 to 1120) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1120) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1120) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1120) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21484. On Dec 2, 2016 this sequence version replaced NP_461525.1. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1120 /organism="Phage Gifsy-1" /db_xref="taxon:129861" Protein 1..1120 /product="Gifsy-1 prophage protein" /calculated_mol_wt=122951 Region 216..1057 /region_name="COG4733" /note="Phage-related protein, tail protein J [Mobilome: prophages, transposons]" /db_xref="CDD:443767" CDS 1..1120 /locus_tag="STM2589" /coded_by="complement(NC_003197.2:2737434..2740796)" /note="similar to host specificity protein-J in phage lambda" /transl_table=11 /db_xref="GeneID:1254112" CONTIG join(WP_000514917.1:1..1120) ORIGIN 1 mgkgggkght preapdnlks tqllsvidai segpiegpvn glqsvlvnqt pvvdrdgntn 61 ihgvkvvyrv geqeqtpleg fessgaetvl gvqvkydnpv trtitaanid rlrftfgvqs 121 lveanskgdr nptsvrlqih lerygqwvve keititgktt tqylasvivd nlpprpfgir 181 mvrvtadstt dqlqnntvws syteiidvrq rypntavigl qveseqfgsq qvtrnyhffg 241 riihvpsnyd pvartysgiw dgtfkpaysn npawclwdvl thprygmgqr igaadvdrwa 301 lyaigqycdq mvpdgfggte prmtfnayla qqrkawdvlt dfcsamrcmp vwngqmmtfv 361 qdrpsdtvwt ytrsnvvmpd egtpfrysfs arkdrhnave vnwidpdngw qtstelvedt 421 vaishygrnl vkmdafgcts rgqahraglw liktelletq tvdfsvgaeg lrhvpgdvie 481 vcdedyagis lggrilsvdr arriltldre itlpssgttl islmdgeglp vsvdvqsvtd 541 gvqvqvsrip dgvaeysvwg lklpslrqrl frcvavrend dgtyaitavq hvpekesivd 601 ngasfdpqpg tihgtvppai qhltteilae egqyqvlarw dtprvvkgas fslrlnvaae 661 dgsdrlvssa gtpdtqyrfr gltpgrytls vravnsqgqq gdpastqfsi sapaapsfie 721 ltpgyfqita tprqavydpt vqyefwfsda qitdihqven aarylgtaly wiaasvnirp 781 grdyyfyira vnqvgksafv eatgqasnda agyldffkgq iteshlgkel lekveltedn 841 asklqqfske wqdandkwna mwgvkieqtk dgkyyvaglg lsmedmpdgk isqflvaadr 901 iayinpangn etpgfvmqgd qiimneaflk ylsaptitsg gnppafsltp dgkltaknad 961 isghinavsg sftgeinats gkfsgviear efvgdicgsk vmqgvsiret nderststry 1021 tdsatyqigk titvmancer nggsgaitvt iningqvkta evipytaglp amyqtvvfsv 1081 yttspvvdis vslrvrgqyt tsasvwplvm vsrsgnnftn