Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_459046 679 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_459046 VERSION NP_459046.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 679) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 679) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 679) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 679) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19005. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..679 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..679 /product="putative glycosyl hydrolase" /calculated_mol_wt=78301 Region 138..236 /region_name="GH31_N" /note="N-terminal domain of glycosyl hydrolase family 31 (GH31); cd14752" /db_xref="CDD:270212" Site 171 /site_type="active" /db_xref="CDD:270212" Region 236..568 /region_name="GH31_xylosidase_XylS" /note="xylosidase XylS-like; cd06591" /db_xref="CDD:269877" Site order(253,281..282,320,387,389,442,456,459,492,522) /site_type="active" /db_xref="CDD:269877" CDS 1..679 /locus_tag="STM0041" /coded_by="complement(NC_003197.2:48372..50411)" /note="similar to E. coli orf, hypothetical protein (AAC76680.1); Blastp hit to AAC76680.1 (772 aa), 25% identity in aa 116 - 547, 27% identity in aa 549 - 665, 25% identity in aa 84 - 149" /transl_table=11 /db_xref="GeneID:1251559" CONTIG join(WP_001116457.1:1..679) ORIGIN 1 mpfmqqdprr lvwqqndryl wiepwgensl rvrsgrhlpv mrnedwalte pvaesqchid 61 yehhqatltn gkiiaivnqk gqvtfyrhph kpllqefwrl rgeigedess hgqyvsalnl 121 egrefrpiqg gkyslkarfe ategekiygm gqyqqanldl kgcvlelaqr nsqasvpfml 181 sslgygflwn npavgrvtfa qnvteweaqv seqldywita gdtpaeisra yalatgtppm 241 mpdyamgfwq cklryrtqee llevareykr rnlpisvivi dffhwpnqgd wmfdardwpd 301 pdamiaelks lgielmvsvw ptvdnrtesy remrengwlv qterglpinm dflgnttyfd 361 athpgardyv wgkakrnyyd kgvklfwlde aepefsvydy dnyryhagpv levgniyprm 421 yaktffdgmk adgedqvinl lrcawagsqk ygalvwsgdi hssfrslrnq faaglnmgia 481 gipwwttdig gfhggnihdp kfhellirwf qwgvfspvmr lhgnrdpqil paqpyrdgia 541 qcptgapnev wsygeevcev ltgclalrek lkpyikalme ethkhntpvm rplffefpeq 601 etswtitdqy cfgpdlliap vmhegmrerd vwlpegetwt dlatgesysg gqtlqyatpl 661 nripvfireg gqyrsllnl