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LOCUS NP_462591 1461 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_462591 VERSION NP_462591.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1461) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1461) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1461) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1461) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22550. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1461 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1461 /product="putative inner membrane protein" /calculated_mol_wt=147707 Region 1..50 /region_name="ESPR" /note="Extended Signal Peptide of Type V secretion system; pfam13018" /db_xref="CDD:463773" Region 95..229 /region_name="LbR_YadA-like" /note="YadA-like, left-handed beta-roll; cd12820" /db_xref="CDD:240612" Site order(96,99..100,108,113..114,122,124,126..128,136,138, 154..156,164,166,168..170,178,180,182..184,192,194, 196..198,206,208,210..211,215,217..218,221..226) /site_type="other" /note="trimer interface [polypeptide binding]" /db_xref="CDD:240612" Region 244..>486 /region_name="VOMP_auto_Cterm" /note="Vomp family autotransporter C-terminal domain; NF033870" /db_xref="CDD:411434" Region 469..>668 /region_name="VOMP_auto_Cterm" /note="Vomp family autotransporter C-terminal domain; NF033870" /db_xref="CDD:411434" Region 622..1460 /region_name="Hia" /note="Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; COG5295" /db_xref="CDD:444098" CDS 1..1461 /locus_tag="STM3691" /coded_by="NC_003197.2:3881240..3885625" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 21% identity in aa 33 - 530, 22% identity in aa 123 - 528, 20% identity in aa 113 - 565, 24% identity in aa 164 - 579, 23-1073758628dentity in aa 75 - 485, 28% identity in aa 217 - 484, 25-1073758654dentity in aa 113 - 459, 21% identity in aa 174 - 486, 20% identity in aa 58 - 497, 19% identity in aa 2 - 486, 19% identity in aa 88 - 534, 20% identity in aa 125 - 463, 18% identity in aa 98 - 482, 22% identity in aa 645 - 1110, 19-1073758588dentity in aa 780 - 1104, 24% identity in aa 968 - 1113, 26-1073758532dentity in aa 961 - 1047, 22% identity in aa 967 - 1089, 22% identity in aa 962 - 1116, 29% identity in aa 965 - 1093, 23% identity in aa 1006 - 1114, 20-1073758588dentity in aa 765 - 859, 29% identity in aa 1011 - 1083, 23% identity in aa 982 - 1117, 24-1073758532dentity in aa 807 - 859, 25% identity in aa 965 - 1114, 25% identity in aa 787 - 873, 19% identity in aa 829 - 859" /transl_table=11 /db_xref="GeneID:1255215" CONTIG join(WP_001079584.1:1..1461) ORIGIN 1 mnrifkvlwn aatgtfvvts etaksrgkkn grrklavsal iglssimvsa dalanagndt 61 gdgvtptgtq tggkgwiaig tdatantytn vdgasaamgy kasamgkwst aigsysqstg 121 dsslalgvks vsagdraiam gasssasgsy smamgvyans sgaksvalgy ksvasgatss 181 algyqatasg ddsaafgnga kaigtnsval gsgsvaqedn svavgnsttq rqityvakgd 241 inststdavt gaqiyslsqs vadrlgggas vnsdgtvnap lyevgtgiyn nvgsalsaln 301 tsitnteasv aglaedallw desisafsas htgnaskitn laagtlaads tdavngsqlf 361 dtnekvdknt adiatntgsi nqntaditan tdsinqnttd iaanttsinq nttdiatntt 421 ninslsdsvt tltddallwd aasgafsakh ngsdskitnl aagtlaadst davngsqlfd 481 tnekvdqnta dittntnsin qnttdiatnt tninnlsdsi ttltddallw daasgafsan 541 hngsaskitn laagtlaads tdavngsqlf atnenvsqnt adittntnsi nqnttdiatn 601 ttsinnlsds ittltddall wdaasgtfsa srsgsaskit nlaagtlaad stdavngsql 661 yetnqkvdqn tsaiadints itnlssdnls wnettssfsa shgssttnki tnvaagelse 721 estdavngsq lfetnekvdq nttdiaantt nitqnstaie nlntsvsdin tsitgltdna 781 llwdedtgaf sanhggstsk itnvaagals edstdavngs qlyetnqkvd qntsaiadin 841 tsitnlgtda lswddeegaf sashgtsgtn kitnvaagei asdstdavng sqlyetnmli 901 sqynesisql agdtsetyit engtgvkyir tndnglegqd ayatgngata vgydavasga 961 gslalgqnss ssiegsialg sgstsnrait tgiretsats dgvvigyntt drellgalsl 1021 gtdgesyrqi tnvadgseaq davtvrqlqn aigavtttpt kyyhanstee dslavgtdsl 1081 amgaktivna dagigiglnt lvmadaingi aigsnaranh ansiamgngs qttrgaqtdy 1141 taynmdtpqn svgefsvgse dgqrqitnva agsadtdavn vgqlkvtdaq vsrntqsitn 1201 lntqvsnldt rvtniengig divttgstky fktntdgada naqgadsvai gsgsiaaaen 1261 svalgtnsva deantvsvgs stqqrritnv aagvnntdav nvaqlkasea gsvryetnad 1321 gsvnysvlnl gdgsggttri gnvsaavndt davnyaqlkr sveeantytd qkmgemnski 1381 kgvenkmsgg iasamamagl pqayapganm tsiaggtfng esavaigvsm vsesggwvyk 1441 lqgtsnsqgd ysaaigagfq w