DNA-damage-inducible protein F [Salmonella enterica subsp. enterica

LOCUS       NP_463103                441 aa            linear   CON 08-SEP-2022
            serovar Typhimurium str. LT2].
ACCESSION   NP_463103
VERSION     NP_463103.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (residues 1 to 441)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 441)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 441)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 441)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL23062.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     Protein         1..441
                     /product="DNA-damage-inducible protein F"
                     /calculated_mol_wt=47634
     Region          1..441
                     /region_name="PRK10367"
                     /note="DNA-damage-inducible SOS response protein;
                     Provisional"
                     /db_xref="CDD:182413"
     CDS             1..441
                     /gene="dinF"
                     /locus_tag="STM4238"
                     /coded_by="NC_003197.2:4460051..4461376"
                     /note="induced by UV and mitomycin C; SOS, lexA regulon;
                     similar to E. coli DNA-damage-inducible protein F
                     (AAC77014.1); Blastp hit to AAC77014.1 (459 aa), 89%
                     identity in aa 19 - 457"
                     /transl_table=11
                     /db_xref="GeneID:1255764"
CONTIG      join(WP_001128116.1:1..441)
ORIGIN      
        1 mplftssdka lwrlalpmif snitvpllgl vdtavighld spvflggvav gatatsflfm
       61 lllflrmstt gltaqafgak npqalarali qplllalgag vmivlfrtpl ielalhivgg
      121 ndavlvqarr fleirwlsap aslanlvllg wllgvqyara pvillvvgni lnialdlwlv
      181 mglhmnvqga alatviaeyv tlliglmmvr kvlhlrgvsl dmlkqawrgn vrrllalnrd
      241 imlrslllql cfgaitvsga rlgsdiiavn avlmtlltft ayaldgfaya veahsgqayg
      301 ardgsklldv wraacrqsgi vallfstvya lagehivall tslpqiqlla dryliwqvvl
      361 plvgvwcyll dgmfigatra aemrnsmava aggfaltlfa lpvlgnhglw laltvflalr
      421 glslsliwrr hwregtwfar s