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LOCUS NP_461450 1865 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_461450 VERSION NP_461450.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1865) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1865) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1865) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1865) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21409. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1865 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1865 /product="putative outer membrane protein" /calculated_mol_wt=200226 Region 1..1865 /region_name="PRK15315" /note="outer membrane protein RatA; Provisional" /db_xref="CDD:237941" CDS 1..1865 /gene="ratA" /locus_tag="STM2515" /coded_by="complement(NC_003197.2:2641875..2647472)" /note="RatA (gi|4583529)" /transl_table=11 /db_xref="GeneID:1254037" CONTIG join(WP_000375792.1:1..1865) ORIGIN 1 mdrnrqvnkv vhflltllim favsiapaqa llkggtwqel nsvtgavngt apladgaiip 61 lyqgstlldp skthdiefsa mprdfsadat stsmravnst dtegdlfsdp ptiawenrqp 121 pamglvwada atpdtplspq pvpnltfcaq nlagrqlvaw aqvedetnvp alwlftrtgv 181 pnyatiplls pkvalnikpa tdtpvtvsgd hvdsafeask vkvgesitlt istkacdgtp 241 egnapfvirr kdaenrqgvv nnanpvrvgd teltttqtey rgvtdangna tvvvtqkegp 301 gvktplvvss vnfpaltaet avifttitsp dsdkasmygh miesatatln gitytftrpk 361 laaeasgadk svvdtnetwa lftwsgadnh cdilpdaeql vqmrhehstl etwtgwpvag 421 daeywsstkn qlsgyhaavh mnsasvvraa dsdtllvscv dkaqpaahpq itlspqgpyk 481 aqvgesidlt mtvvdrdtqk plpyrymelf idpaknrkge hqdawdnlrv tvdsegmsas 541 spehytgvtd vngqahltlk hnsglgvetp irivmpddeg gnvelsfsvi ftvvtspdvd 601 ganmwghmrg vvdagnlykr pllaveashk dgqfsennee watfnsvasa taqcgvgqvp 661 dqsslahlys ehaggqmese hgwptedyfi aadsdasgtv hvnlengdsg kftdtpnylt 721 csanemvavl dvyfnddpvi knadakvgeq vkmnihsrna lngmaigntd ftitmangrr 781 rdglttgftd tsngemqfdd vgyvagqvyh gitdangdat iiltqkkgvg lltplniapv 841 dslistpvsr svkftvatsp dtpaakmwgh madtitvgdw tferpklage vsnplrtqde 901 snetwarvah sdavgnpdag gcaanrlpri dqlealynan sggkihsiqg wptylnywss 961 tyqsattwkl ialtngsefa nsnvsiyasc lasdnpvaas itiepvnpsq wydgsdvhav 1021 kvkkgetmql kvtvkdvsgn pipeapfvlt rgdgydrrge kytaqdgddl qgivtpvvid 1081 geslawtttk mgsqtgtdgt riisvtrpdt hgtrtainat lyenaavsas idtiftvvts 1141 pdvsvarmwg hmapsltaad gavyqrplly aelsstdnta skqetnetwa vfhgpasega 1201 nparcaagyy pavealdsly skypsrtint aqgwpvyysy wsgsnstsfs sgakldfyya 1261 vdladgsrrs ensatstawq yqicattplp qatqitltsp qamddaiqav kaknsesipl 1321 litttdamgn pvpyatfslk rdagkarnpd ynkfvatngt nmtvtpltga qqqfyyatsv 1381 ltgatgadgt laltlaepgg iglknqltan lndtptatss lpvvftvlts pdsdkanmyg 1441 hmpetftasn gaefkrplva gepsseahtd tyfetnenwi mvnsfntgny ggcpmnqmaa 1501 iddftalynd hpsgkvatdi glpvgkrwwa gdsllkgstl ywqykdlktg knysmsenpg 1561 nyylqlcltt srsglnials sdawnadksa avakkgetip mtvtvtndag qpqagvavll 1621 trdyaysrga vdkqyiepgv igepvpftts panmmlapva pagtavafnn qnglstkwsg 1681 ftgddgklrf tltqdkslgl ktsvtaalan qfdeaasvda iftvqtspdt pyasywghmp 1741 dtvqvngvtl rrpylkaels aaprdtwpfn nefwgtnyyy qsehvetslt hlcgsqenia 1801 slddlkalqs vigtlqwptt sswdyvsqde gqsnkyycsf nettgqttct rekattsglg 1861 scrvp