Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_463348 1171 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_463348 VERSION NP_463348.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1171) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1171) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1171) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1171) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL23307. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1171 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1171 /product="putative superfamily I DNA helicases" /calculated_mol_wt=131645 Region 150..988 /region_name="DNA2" /note="Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]; COG1112" /db_xref="CDD:440729" Region 1021..1169 /region_name="PLDc_yjhR_C_like" /note="C-terminal domain of Escherichia coli uncharacterized protein yjhR and similar proteins; cd09118" /db_xref="CDD:197217" Site order(1114,1116,1129,1131,1145) /site_type="active" /note="putative active site [active]" /db_xref="CDD:197217" Site 1114 /site_type="active" /note="catalytic site [active]" /db_xref="CDD:197217" CDS 1..1171 /locus_tag="STM4489" /coded_by="NC_003197.2:4731981..4735496" /note="similar to E. coli putative frameshift suppressor (AAC77264.1); Blastp hit to AAC77264.1 (338 aa), 68% identity in aa 1 - 338" /transl_table=11 /db_xref="GeneID:1256015" CONTIG join(WP_000342544.1:1..1171) ORIGIN 1 mddnalgfas ywrnsladae sgkgsferkd aknfthwhgi aagrldetiv gkffegekdd 61 vetvdvilrp kvyfrllqrg kdhsagapdi vtpivtpall sregflyptp atsiprdlle 121 plpkgafsig eieqydkykt thtsfsinfd drvdktaetd eerearyaaw qqdwrqyldd 181 serllknvvg dwiknpeqye laehgyivkt aqsggasfhi lslydhllvc kkdvplfnrf 241 asrevhaaes llppeakfsd righsgdkfp lakaqrdals hfldarhgdi lavngppgtg 301 kttlvlsiia tqwaraalek aeppviiats tnnqavtnii eafgkdfsqg tgamagrwlp 361 elksfgayfp sstrkaeaak kyqtedffnq veskeyveda llfylekaka afpekecssp 421 ekviellhgq laakseqlvr lnatwqtlsq vratrelidn dieqyldnln kllsgqeqkv 481 tqlksakaew kkyrasesli yplfswlpvv rskrqyqiql fledklgali agnqwsdpet 541 iernidrlln saereqttyr qqidsaheiv lkeqqaaqew qrlaldlghe gdeelsfsqa 601 deladtqirf paflltthyw egrwlmdmag iddlqkekgk kgakgvtarw qrrmkltpcv 661 vmtcymlpgn mqisehkgqr kfeksylydf adllivdeag qvlpevaaas falakkalvi 721 gdteqippiw sitpaidign mlaekilsgs tqeeitekyt aiaelgksaa sgsvmkiaqc 781 asryqydpel argmylyehr rcfdniigyc ntlcyhgkll pkrgceesnl mpamgylhid 841 gkgelassgs rynlleaeti aawltdnqqs ieahygkslh evvgivtpfs aqvptikqal 901 dkqgisagtn etsltvgtvh slqgaeraiv ifspvyskhe dgafidsdns mlnvavsrak 961 dsflvfgdmd lfeiqpassp rgllakylfe seknaltfdy kerkdlktae tkiytlhgve 1021 qhdnflnqtf entdkhitiv spwltwqkle qtgfldsmit acsrginvtv vtdrsynteh 1081 ndfekrkekq qnlkaalekl nalgiatklv nrvhskivig ddgllcvgsf nwfsatrear 1141 yerydtsmvy cgdnlkgeie aiynsldrrq v