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LOCUS NP_461184 788 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_461184 VERSION NP_461184.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 788) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 788) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 788) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 788) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21143. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..788 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..788 /product="Leucine-rich repeat protein" /calculated_mol_wt=87092 Region 1..788 /region_name="PRK15387" /note="type III secretion system effector E3 ubiquitin transferase SspH2" /db_xref="CDD:185285" Region 205..222 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275378" Region 284..303 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 344..362 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 384..403 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 404..427 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 447..464 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275378" CDS 1..788 /gene="sspH2" /locus_tag="STM2241" /coded_by="complement(NC_003197.2:2340884..2343250)" /note="induced by the SPI-2 regulator ssrA/B" /transl_table=11 /db_xref="GeneID:1253763" CONTIG join(WP_001115840.1:1..788) ORIGIN 1 mpfhigsgcl patisnrriy riawsdtppe msswekmkef fcsthqteal eciwtichpp 61 agttredvin rfellrtlay agweesihsg qhgenyfcil dedsqeilsv tlddagnytv 121 ncqgysethr ltldtaqgee gtghaegasg tfrtsflpat tapqtpaeyd avwsawrraa 181 paeesrgraa vvqkmracln ngnavlnvge sglttlpdcl pahittlvip dnnltslpal 241 ppelrtlevs gnqltslpvl ppgllelsif snplthlpal psglcklwif gnqltslpvl 301 ppglqelsvs dnqlaslpal pselcklway nnqltslpml psglqelsvs dnqlaslptl 361 pselyklway nnrltslpal psglkelivs gnrltslpvl pselkelmvs gnrltslpml 421 psgllslsvy rnqltrlpes lihlssettv nlegnplser tlqalreits apgysgpiir 481 fdmagasapr etralhlaaa dwlvparege papadrwhmf gqednadafs lfldrlsete 541 nfikdagfka qisswlaqla edealrantf amateatssc edrvtfflhq mknvqlvhna 601 ekgqydndla alvatgremf rlgkleqiar ekvrtlalvd eievwlayqn klkkslglts 661 vtsemrffdv sgvtvtdlqd aelqvkaaek sefrewilqw gplhrvlerk apervnalre 721 kqisdyeety rmlsdtelrp sglvgntdae rtigarames akktfldglr plveemlgsy 781 lnvqwrrn