Fels-1 prophage protease subunits of ATP-dependent proteases

LOCUS       NP_459889                728 aa            linear   CON 08-SEP-2022
            [Salmonella phage Fels-1].
ACCESSION   NP_459889
VERSION     NP_459889.3
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Salmonella phage Fels-1
  ORGANISM  Salmonella phage Fels-1
            Viruses; unclassified bacterial viruses.
REFERENCE   1  (residues 1 to 728)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 728)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 728)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 728)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL19848.
            
            On Dec 2, 2016 this sequence version replaced NP_459889.2.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Salmonella phage Fels-1"
                     /db_xref="taxon:128975"
     Protein         1..728
                     /product="Fels-1 prophage protease subunits of
                     ATP-dependent proteases"
                     /calculated_mol_wt=78895
     Region          63..221
                     /region_name="S14_ClpP_1"
                     /note="Caseinolytic protease (ClpP) is an ATP-dependent,
                     highly conserved serine protease; cd07016"
                     /db_xref="CDD:132927"
     Site            order(66,68,79..80,83,99,106,110,113,116..117,121,129,149,
                     151,157..160,167,170,172,174,204,206)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:132927"
     Site            order(132,155,204)
                     /site_type="active"
                     /note="active site residues [active]"
                     /db_xref="CDD:132927"
     Region          <589..662
                     /region_name="Mu-like_gpT"
                     /note="Mu-like prophage major head subunit gpT; cl01826"
                     /db_xref="CDD:470363"
     CDS             1..728
                     /locus_tag="STM0912"
                     /coded_by="NC_003197.2:983266..985452"
                     /note="similar to E. coli ATP-dependent proteolytic
                     subunit of clpA-clpP serine protease; ClpP family members;
                     heat shock protein F21.5 (AAC73540.1); Blastp hit to
                     AAC73540.1 (207 aa), 29% identity in aa 73 - 203"
                     /transl_table=11
                     /db_xref="GeneID:1252431"
CONTIG      join(WP_000860093.1:1..728)
ORIGIN      
        1 mktvswgwcl tpirrmkpes npmlkrkkrt lksppramaa argknesgae swytiraaad
       61 naadisiyde iggwgisahw faeelvalgs itqinlhihs pggsifdgla iynllknhpa
      121 rkvvyvdgva csmasviamv gdpvimpena mmmihrprgi aggessdird yadlldkmes
      181 viipiyaekt gkspddiaal lasetwmsga ecvregfadk viqpvramah lhskrleefe
      241 hmpqnvknmi iapqgnagtl tqpepepqai mttppvavtt pspqpattap gtdeitlrar
      301 fqeeqrqris giqnvfgmfg nrhgelmaqc iadvdcnvda akdkllealg rgvtptntlg
      361 gtqntqnpml shiyagngnf agdgiraslm aragfessqa dnpynamtmr elarmslter
      421 gvgvstlnpm qmvgmafths tsdfgnilld vankailqgw eeapetyelw trkgqlsdfk
      481 tahrvgmggf nslrqvrega eykyvttgdk qatialatyg elfsitrqai inddlnmltd
      541 vpmklgraak stiadlvyai ltsnpkmstd nvnlfdkakh anvlegalmd vasldkarql
      601 mrtqkegerh lnirpafvlv ptalesvtnq vikstsvkga dinagiinpv kdfatviaep
      661 rlddnsqstf ylaaakgtdt ievaylngvd tpyidqqdgf svdgvttkvr idagvapvdh
      721 rglvkcsa