putative PAS/PAC domain protein [Salmonella enterica subsp.

LOCUS       NP_460662                660 aa            linear   CON 08-SEP-2022
            enterica serovar Typhimurium str. LT2].
ACCESSION   NP_460662
VERSION     NP_460662.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (residues 1 to 660)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 660)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 660)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 660)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL20621.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     Protein         1..660
                     /product="putative PAS/PAC domain protein"
                     /calculated_mol_wt=74547
     Region          1..660
                     /region_name="PRK10060"
                     /note="cyclic di-GMP phosphodiesterase"
                     /db_xref="CDD:236645"
     CDS             1..660
                     /gene="yciR"
                     /locus_tag="STM1703"
                     /coded_by="NC_003197.2:1796536..1798518"
                     /note="diguanylate cyclase/phosphodiesterase domain 1;
                     Diguanylate cyclase/phosphodiesterase domain 2; similar to
                     E. coli orf, hypothetical protein (AAC74367.1); Blastp hit
                     to AAC74367.1 (661 aa), 79% identity in aa 1 - 657"
                     /transl_table=11
                     /db_xref="GeneID:1253222"
CONTIG      join(WP_001623919.1:1..660)
ORIGIN      
        1 mmkqiqeqta lnplhshwrl addrnvlyls ptgetdaekt velspeqagr ireitaitss
       61 llitlliekq vtavhlvgrk innrewagsl atwpdtpavs ptqaqelsfa eqivseansv
      121 iaildsrgki crfnrlceey tglkerdvig qsvfklfmsr reavasrhyi enffrngnay
      181 eierwiktrk gqrlflfrnk fvhngsgkne iflicagtdi teerraqerl rilantdtvt
      241 glpnrnaihe finhaiasag esqvgivyld ldnfkkinda yghmfgdqll qavslallsc
      301 leedqllarl ggdefivlaa htsqaaleav asriltrlrq pfriglievy tgcaigisla
      361 prhgqdsesl irtadtamyn akeggrgqfc vfspemnqrv fdyhwldtnl rkalendqll
      421 ihyqpkitwr gevrslealv rwqspergli pplefisyae esglivplgr wvildvvrqi
      481 akwrdkginl rvavnfsarq ladqtlftal kqalydlnfe ycpidvelte scliendtla
      541 lsviqqfsql gaqihlddfg tgysslsqla rfpidavkld qafvrdihkq plsqslvrai
      601 vavaqalnlq viaegvenak edafltkngv nerqgflfak pmpavsferw ykryqtkkmr