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LOCUS NP_461865 887 aa linear CON 08-SEP-2022 Typhimurium str. LT2]. ACCESSION NP_461865 VERSION NP_461865.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 887) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 887) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 887) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 887) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21824. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..887 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..887 /product="putative helicase" /calculated_mol_wt=100653 Region 3..819 /region_name="DEAD-like_helicase_N" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; cl28899" /db_xref="CDD:475120" CDS 1..887 /gene="ygcB" /locus_tag="STM2944" /coded_by="complement(NC_003197.2:3084047..3086710)" /note="similar to E. coli orf, hypothetical protein (AAC75803.1); Blastp hit to AAC75803.1 (888 aa), 30% identity in aa 7 - 849" /transl_table=11 /db_xref="GeneID:1254467" CONTIG join(WP_000029738.1:1..887) ORIGIN 1 msiyhywgks rrgetdggdd yhllcwhsld vaavgywmvi nniyfidhyl kklgiqdkeq 61 aaqffawilc whdigkfahs fqqlyrheal nifneptrhy ekiahttlgy mlwnswlsec 121 pelfppssls vrkskrvmal wmpvttghhg rppeaiqeld hfrqqdkdaa rdfllrikal 181 fplitlpeaw dedegidqfq qlswfisaav vladwtgsas ryfprtaekm pvdtywqqal 241 akaqtaitlf psaanvsaft gietlfpfiq hptplqqkal eldinvdgaq lfiledvtga 301 gkteaalila hrlmaagkaq glyfglptma tanamferma ntwlalyqpd srpslilahs 361 arrlmdrfnq siwsvtlsgt eepdeaqpys qgcaawfads nkkallaevg vgtldqamma 421 vmpfkhnnlr llglsnkill adeihacdaw msrileglie rqasngnati llsatlsqqq 481 rdklvaafsr gvrrsvqapl lghddypwlt qvtqtelisq rvdtrkever cvdigwlhse 541 eaclerigea vekgnciawi rnsvddairi yrqlqlskvv vtenlllfhs rfafydrqri 601 esqtlnlfgk qsgaqragkv iiatqvieqs ldidcdemis dlapvdlliq ragrlqrhir 661 drnglvkksg qderetpvlr ilapewddap renwlssamr nsayvypdhg rmwltqrilr 721 eqgtirmpqs arlliesvyg edvnmpvgfa kteqlqegkf ycdrafagqm llnfapgyca 781 eisdslpekm strlaeesvt lwlakivdsv vtpyasgeha wemsvlrvrq swwnkhkdef 841 ekldgeplrk wcaqqhqdkd fatvivvtdf aacgysaneg ligmmge