Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_461438 737 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_461438 VERSION NP_461438.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 737) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 737) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 737) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 737) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21397. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..737 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..737 /product="putative diguanylate cyclase" /calculated_mol_wt=84140 Region 28..320 /region_name="MASE1" /note="pfam05231" /db_xref="CDD:428383" Region 216..737 /region_name="EAL" /note="EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) [Signal transduction mechanisms]; COG2200" /db_xref="CDD:441802" Region 497..733 /region_name="EAL" /note="Putative diguanylate phosphodiesterase; smart00052" /db_xref="CDD:214491" CDS 1..737 /locus_tag="STM2503" /coded_by="complement(NC_003197.2:2618584..2620797)" /note="similar to E. coli putative cytochrome C-type biogenesis protein (AAC75556.1); Blastp hit to AAC75556.1 (747 aa), 73% identity in aa 1 - 733" /transl_table=11 /db_xref="GeneID:1254025" CONTIG join(WP_000773647.1:1..737) ORIGIN 1 mklnktyini rdkwwglpli lpsillpvls santyaltst gnvvlfylpl afmlslmlff 61 gwaalpgivl aifwrrypqt glyetlsvtm hfiitivlsw ggyrvfsprr nnvshgdahl 121 lfqrifwqvf csatlflviy qfaafvgmye skaslmgvmp fnintlinyq allvgnlvgv 181 plcyfiirtl rnplhlrgyy qqlklqidsk atkkeiviwl avlttlmfil cmpltdnssi 241 fstnytlsll lpvmlwgamr ygykfisiiw avvlitsihy yqrympwysg ydtqlaitss 301 sylvfsfivn ymsvlatrqr vvsgrarrla yldpvvhlpn lralnralqn apwsticflh 361 vpglellgkn ygvmlriqyk qklshwitpm lasnecvyqm sghdlvlrln teahqqriea 421 ldkhikqfrf iwdglplqpp vgvsyccvrs pvshlylllg elstssdlsl ttnapedlqr 481 rgamhlqrdl kgriammnrl qqalehdhff lmaqpifgvr gdvyheillr lrddngdvin 541 pdnflpvahe fglssaidlw vientlrfma asreympahr fainlsptsv crarfpaevk 601 qlltqyqvep wqlvfevtes nsltnaeqaq ltlgqlqqfg cqiaiddfgt gyasyarlkn 661 vdadilkidg sfirnivsns ldyqivasic hlarmknmqv vaeyveseei rsvvlslgid 721 ylqgyligep qllseiq