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LOCUS NP_462976 732 aa linear CON 08-SEP-2022 str. LT2]. ACCESSION NP_462976 VERSION NP_462976.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 732) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 732) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 732) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 732) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22935. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..732 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..732 /product="factor Y" /note="primosomal protein N'" /calculated_mol_wt=81641 Region 1..731 /region_name="PriA" /note="Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]; COG1198" /db_xref="CDD:440811" CDS 1..732 /gene="priA" /locus_tag="STM4095" /coded_by="complement(NC_003197.2:4303374..4305572)" /note="directs replication fork assembly at D-loops; similar to E. coli primosomal protein N'(= factor Y)(putative helicase) (AAC76917.1); Blastp hit to AAC76917.1 (732 aa), 90% identity in aa 1 - 732" /transl_table=11 /db_xref="GeneID:1255622" CONTIG join(WP_000109379.1:1..732) ORIGIN 1 msvahvalpv plprtfdyll peggvakagc rvrvpfgkqq ervgivvsis dhselpldel 61 ksvieildne pifspsiwrl llwaadyyhh plgdvlfhal pvllrqgkpa snaplwywfa 121 teegqavdin slkrsakqqq alaalrqgki wryqvaeldf tdatlqtlrr kglcelaset 181 paftdwrery avagerlrln teqatavgai hsasdgfsaw llagvtgsgk tevylsvlen 241 vlaqgkqalv mvpeigltpq tiarfrerfn apvevlhsgl ndserlsawl kakngeaaiv 301 igtrsslftp fknlgvivid eehdssykqq egwryhardl avyrahseqi piilgsatpa 361 letlcnvrqk kyrmlrltrr agnarpalqh vldlkgqrlq aglapaliar mrqhlqadnq 421 vilflnrrgf apallchdcg wiaecprcdh yytlhqaqhh lrchhcdsqr pvprqcpscg 481 sthmlpvglg teqleqvlap ffpgvpisri drdttsrkga leqhlaevhr ggariligtq 541 mlakghhfpd vtlvalldvd galfsadfrs aerfaqlytq vsgragragk qgevvlqthh 601 pehpllqtll ykgydafaeq alaerqtlql ppwtshviir aedhnnqqap vflqqlrnli 661 qasplsddkl wilgpvpala pkrggryrwq illqhpsrir lqhiisgtla lintlpeark 721 vkwvldvdpi eg