Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_459348 762 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_459348 VERSION NP_459348.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 762) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 762) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 762) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 762) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19307. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..762 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..762 /product="putative cation transport ATPase" /EC_number="3.6.1.-" /calculated_mol_wt=80050 Region 10..75 /region_name="CopZ" /note="Copper chaperone CopZ [Inorganic ion transport and metabolism]; COG2608" /db_xref="CDD:442020" Region 97..748 /region_name="P-type_ATPase_Cu-like" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; cd02094" /db_xref="CDD:319783" Site order(396,398,703) /site_type="other" /note="putative Cu binding site [ion binding]" /db_xref="CDD:319783" Site order(440..442,505,521..523,552,592..594,614,617,620,639, 642) /site_type="other" /note="putative ATP binding site [chemical binding]" /db_xref="CDD:319783" Site order(704,732,736) /site_type="other" /note="putative Cu binding site [ion binding]" /db_xref="CDD:319783" CDS 1..762 /locus_tag="STM0353" /coded_by="NC_003197.2:398561..400849" /note="similar to E. coli putative ATPase (AAC73586.1); Blastp hit to AAC73586.1 (834 aa), 42% identity in aa 99 - 831, 45% identity in aa 4 - 63" /transl_table=11 /db_xref="GeneID:1251872" CONTIG join(WP_000083318.1:1..762) ORIGIN 1 msqsenrhdt islliegmtc ascvarvekg ikavpgvtda tvnlaterat vrgtasaeav 61 iaaiektgyk arpietagqg eddseekkea ervrlkrdli lasvlalpvf vlemgshlip 121 gmhewvikti glqqswywqf altllvltip grrfylkgfp alarlapdmn slvavgtaaa 181 fgyslvatft pdllpegtvn vyyeaaaviv alillgrfle arakgrtsea ikrlvglqar 241 vahvlregri vdipvdevvl gdcvevrpge ripvdgevte grsfvdesmi tgepipveks 301 agsavvggtv nqkgaltlra tavggqtmla qiirlveqaq gsklpiqavv dkvtlwfvpm 361 vmliaaltfv vwlafgpspa ltfalingva vliiacpcam glatptsimv gtgrgaemgv 421 lfrkgealql lkdakvvavd ktgtltegrp vltdldvasg ferrevlakv aavesrsehp 481 iaraivvsae eegialpgms gfesvtgmgv yatvdgtrvd vgadrymrei gvdisgfatt 541 aerlgqegks plyaaidgql aaiiavadpi kpstpaaina lhqlgikvam itgdnartaq 601 aiarqlgidd vvaevlpegk veairrlkaa ygqvafvgdg indapalaes dvglaigtgt 661 dvavesadvv lmsgnlqgvp naialskati rnihqnlfwa fayntalipv aagalfpvwg 721 illspvfaag amamssvfvl gnalrlrrfr apmatpsdts tt