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LOCUS NP_461300 367 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_461300 VERSION NP_461300.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 367) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 367) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 367) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 367) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21259. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..367 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..367 /product="putative cytoplasmic protein" /calculated_mol_wt=40610 Region 3..365 /region_name="PLPDE_III_AR_like_1" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1; cd06815" /db_xref="CDD:143490" Site order(3,36,38,59..60,62..63,69,84,99,101,105,128..131, 262..265,294,296,298,301..302,361) /site_type="other" /note="dimer interface [polypeptide binding]" /db_xref="CDD:143490" Site order(34,36,57,78,122,129,161,200..201,220..223,301) /site_type="active" /db_xref="CDD:143490" Site order(34,36,57,78,122,161,200..201,220..223) /site_type="other" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]" /db_xref="CDD:143490" Site order(36,129,161,223) /site_type="other" /note="substrate binding site [chemical binding]" /db_xref="CDD:143490" Site 36 /site_type="active" /note="catalytic residue [active]" /db_xref="CDD:143490" CDS 1..367 /locus_tag="STM2358" /coded_by="complement(NC_003197.2:2468647..2469750)" /note="similar to E. coli orf, hypothetical protein (AAC76406.1); Blastp hit to AAC76406.1 (387 aa), 27% identity in aa 33 - 293" /transl_table=11 /db_xref="GeneID:1253880" CONTIG join(WP_000281907.1:1..367) ORIGIN 1 mympvleinl rkleenarte kallassgid vmavnkvfdg cvetaqavfn ggitviaesr 61 tynlkkiret gcttcllrsp clseiedvvr yadislnsep vvlralsqea qrqgkthqvl 121 lmvdmgdlre giwfgeyqri letvtlitgl pglelyglgt nfncygtvlp tvkngedfla 181 laarleadsg ipvrrlsagn ctsyhlldkg iwpqglnhlr igglhefgie yvdmkylnef 241 hhsakpvdka csdmyileae iielnskptv pvgelgvdaf lqsktfvdrg irrrallafg 301 rqdvpsdncv pcddaitilg qtsdhtlvdi edcrqslkvg dvvrfeldyt gllmacqtkg 361 vawrftr