Gifsy-1 prophage protein [Phage Gifsy-1].

LOCUS       NP_461544                643 aa            linear   CON 08-SEP-2022
ACCESSION   NP_461544
VERSION     NP_461544.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Phage Gifsy-1
  ORGANISM  Phage Gifsy-1
            Viruses; unclassified bacterial viruses.
REFERENCE   1  (residues 1 to 643)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 643)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 643)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 643)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL21503.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Phage Gifsy-1"
                     /db_xref="taxon:129861"
     Protein         1..643
                     /product="Gifsy-1 prophage protein"
                     /calculated_mol_wt=72366
     Region          9..636
                     /region_name="gpA1"
                     /note="Phage terminase, large subunit GpA [Mobilome:
                     prophages, transposons]; COG5525"
                     /db_xref="CDD:444276"
     CDS             1..643
                     /locus_tag="STM2608"
                     /coded_by="complement(NC_003197.2:2755588..2757519)"
                     /note="similar to terminase large chain gp2 of N15;
                     similar to E. coli orf, hypothetical protein (AAC73662.1);
                     Blastp hit to AAC73662.1 (247 aa), 53% identity in aa 7 -
                     132"
                     /transl_table=11
                     /db_xref="GeneID:1254131"
CONTIG      join(WP_000623091.1:1..643)
ORIGIN      
        1 misgerrann anraitngli alhipvpltt vqwadeyyyl pkessytpgk wetlpfqvai
       61 mnamgyelir vvnliksarv gytkmllgve gyfiehksrn sllfqptdss aedfmkshve
      121 ptirdvpvll elapwfgrkh rdntltlkrf ssgvgfwclg gaaaknyrek svdvvcydel
      181 ssfepdveke gsptllgdkr iegsvwpksi rgstpkvkgs cqiekaanes ahfmrfyvpc
      241 phcgeeqylk fgdgstpfgl kwekskpetv yylcehngcv irqseldqka grwicdntgm
      301 wtrdglayfs asgeevpppr sitfhiwtay spfttwiqii ydwldalkdp ngvktfintt
      361 lgepyeeava eklshellle kvihyaapvp ervvyltagi dsqrnryemy vwgwapgeea
      421 flidkqiimg rhddedtlqr vdavinkkyr hadgtdisis ricwdiggid aeivykrskk
      481 hgifrvlpvk gasvygkpvi tmpkkrnqsg vflceigtdt akemlyarmg avtapadeat
      541 pyairfpdnp dvfteveakq lvaeelvekl vngkfrllwd akgrrneald clvyasaalr
      601 vsvqrwqldl ealatsrkse eqdtptleql aamlaggvng nnh