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LOCUS NP_461567 961 aa linear CON 08-SEP-2022 ACCESSION NP_461567 VERSION NP_461567.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Phage Gifsy-1 ORGANISM Phage Gifsy-1 Viruses; unclassified bacterial viruses. REFERENCE 1 (residues 1 to 961) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 961) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 961) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 961) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21526. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..961 /organism="Phage Gifsy-1" /db_xref="taxon:129861" Protein 1..961 /product="Gifsy-1 prophage protein" /calculated_mol_wt=106421 Region 6..961 /region_name="PRK09709" /note="exodeoxyribonuclease VIII" /db_xref="CDD:236615" CDS 1..961 /locus_tag="STM2632" /coded_by="NC_003197.2:2771000..2773885" /note="exodeoxyribonuclease VIII homolog (gi|7467238)" /transl_table=11 /db_xref="GeneID:1254155" CONTIG join(WP_000017134.1:1..961) ORIGIN 1 msgtnpvflv rkakkssgqk davlwcsddf eaanatldyl liksgaklkd yfkavatnfp 61 vvnelppege lsltfcdyyq lakdnmtwtq ipgvtlpsse aaaaarqhiv dgvdtetgev 121 ledhtenfgn esnspaqata papeltvvat mplrhrvlaq yigegeylyh vdasqkkeil 181 rlemdtdnsy vqnlllaaen veafkkaieh dihkivnavk kvfpvdgktp elatviqflk 241 twfetehidr gllvkewakg nrvsaiqrte sganagggnk tdrnpdyeht ldtldveiam 301 atlpmdfniy elpgsvyrra keivkkkesp fkewsaalra tpgildysra aifalirsah 361 pefyhypgrl qgyinanlte tdhenpteea ltaarhtpek daveeanrql aaargeyveg 421 isdpndpkwv ktgtsqptte pelvknvgng ifdvsalmqn ssthgtetnp ettsnvqvqk 481 adsdekqagd avqageddlg tgkeavtven qnqaeaqqnv pesqqeepea awpeyfepgr 541 yegvpnevyh aangisstqv kdarvslmyf narhvektiv kerspvldmg nlvhvlalqp 601 enleaefsve peipegaftt tatlrefida hnaslpalls addikallee ynatlpsqmp 661 lgasvdetya syeqlpeefq riengtkhta tamkacikey nvtlpapvkt sgsrdalleq 721 laiinpdlva qeaqkssplk vsgtkadliq avksvnpavv fadelldawr entegkvlvt 781 rqqlstalni qkallehpta gkllthpsra vevsyfgide etglevrvrp dleldmgglr 841 igadlktism wnikqeglra klhreiidrd yhlsaamyce taaldqffwi fvnkdenyhw 901 vaiieastel lelgmleyrk tmreiangfd tgewsapite dytdelndfd vrrlealrvq 961 a