cytochrome c-type biogenesis protein [Salmonella enterica subsp.

LOCUS       NP_462714                643 aa            linear   CON 08-SEP-2022
            enterica serovar Typhimurium str. LT2].
ACCESSION   NP_462714
VERSION     NP_462714.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (residues 1 to 643)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 643)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 643)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 643)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL22673.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     Protein         1..643
                     /product="cytochrome c-type biogenesis protein"
                     /calculated_mol_wt=70252
     Region          2..642
                     /region_name="CcmF"
                     /note="Cytochrome c biogenesis protein CcmF [Energy
                     production and conversion, Posttranslational modification,
                     protein turnover, chaperones]; COG1138"
                     /db_xref="CDD:440753"
     CDS             1..643
                     /gene="ccmF"
                     /locus_tag="STM3814"
                     /coded_by="complement(NC_003197.2:4013927..4015858)"
                     /note="similar to E. coli cytochrome c-type biogenesis
                     protein (AAC75256.1); Blastp hit to AAC75256.1 (647 aa),
                     85% identity in aa 1 - 646"
                     /transl_table=11
                     /db_xref="GeneID:1255341"
CONTIG      join(WP_000982518.1:1..643)
ORIGIN      
        1 mmpeyghall clalgvalll svyplwgvar gdarmmasag vfawllficv agaffvlvha
       61 fvvndftvay vagnsntqlp vwyrvaatwg ahegslllwv llmsgwtlav avfsrqvpad
      121 ivarvlavmg mvcagflafi lftsgpfart lpafpvegrd lnpllqdpgl ifhppllymg
      181 yvgfsvafaf aiaallsgrl dsaftrfarp wtlaawvflt lgivlgsawa yyelgwggww
      241 fwdpvenasf mpwlagtall hslavteqra gfkawtllls icafslcllg tflvrsgvlv
      301 svhafasdpa rgmfilafmv lvtggslllf avrghrvrsr vnnalwsres lllgnnvllm
      361 aamlvvllgt llplvhkqlg lgsisvgepf fntmftwlmv pfalllgvgp lvrwgrdrpr
      421 nirtllltal vstlvlsvll pwlledkiia mtavgmamac wiavlavaea vqrvsrgtkt
      481 slsywgmvaa hlglavtitg iafsqnysve rdvrmragds vtihdyrftf revrditgpn
      541 yrggvaligv trhgepeavl haekrlynts rmvmteaaid ggltrdlyaa lgeeldngaw
      601 avrlyykpfv rwiwaggllm alggllclad pryrrrkplp eag