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LOCUS NP_461416 1037 aa linear CON 08-SEP-2022 enterica subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_461416 VERSION NP_461416.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1037) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1037) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1037) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1037) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21375. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1037 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1037 /product="RND family aminoglycoside/multidrug efflux pump" /calculated_mol_wt=112821 Region 1..1036 /region_name="PRK10555" /note="multidrug efflux RND transporter permease AcrD" /db_xref="CDD:182544" CDS 1..1037 /gene="acrD" /locus_tag="STM2481" /coded_by="NC_003197.2:2593646..2596759" /note="similar to E. coli sensitivity to acriflavine, integral membrane protein, possible efflux pump (AAC75523.1); Blastp hit to AAC75523.1 (1037 aa), 94% identity in aa 1 - 1037" /transl_table=11 /db_xref="GeneID:1254003" CONTIG join(WP_001263078.1:1..1037) ORIGIN 1 manffidrpi fawvlaillc ltgalaifsl pveqypdlap pnvritanyp gasaqtlent 61 vtqvieqnmt gldnlmymss qssgtgqati tlsfiagtdp deavqqvqnq lqsamrklpq 121 avqdqgvtvr ktgdtnilti afvstdgsmd kqdiadyvas niqdplsrvn gvgdidaygs 181 qysmriwldp aklnsfqmtt kdvtdaiesq naqiavgqlg gtpsvdkqal natinaqsll 241 qtpqqfrdit lrvnqdgsev klgdvatvel gaekydylsr fngnpasglg vklasganem 301 ataklvldrl nelaqyfphg leykiayett sfvkasiidv vktlleaial vflvmylflq 361 nfratlipti avpvvlmgtf svlyafgysi ntltmfamvl aigllvddai vvvenverim 421 seegltprea trksmgqiqg alvgiamvls avfvpmaffg gttgaiyrqf sitivsamvl 481 svlvamiltp alcatllkpl hkgeqhgqrg ffgwfnrtfn rnaeryekgv akilhrslrw 541 iliyvlllgg mvflflrlpt sflpqedrgm fttsiqlpsg stqqqtlkvv ekvenyyfth 601 ekdnimsvfs tvgsgpggng qnvarmfvrl kdwdardptt gssfaiiera tkafnqikea 661 rvfassppai sglgssagfd melqdhagag hdalmaardq lielagknss ltrvrhngld 721 dspqlqidid qrkaqalgvs iddindtlqt awgssyvndf mdrgrvkkvy vqaaakyrml 781 pddinlwyvr nkdggmvpfs afatsrwetg sprleryngy saveivgeaa pgvstgtamd 841 vmeslvhqlp ggfglewtam syqerlsgaq apalyaisll vvflclaaly eswsvpfsvm 901 lvvplgviga llatwmrgle ndvyfqvgll tviglsakna ilivefanem nqkghallda 961 tlyasrqrlr pilmtslafi fgvlpmatst gagsgsqhav gtgvmggmis atvlaiffvp 1021 lffvlirrrf plkprpk