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LOCUS NP_463393 921 aa linear CON 08-SEP-2022 protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_463393 VERSION NP_463393.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 921) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 921) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 921) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 921) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL23352. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..921 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..921 /product="putative NtrC family transcriptional regulator, ATPase domain protein" /calculated_mol_wt=103832 Region 1..829 /region_name="PspF" /note="Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]; COG1221" /db_xref="CDD:440834" Region 826..904 /region_name="PRD" /note="PRD domain; pfam00874" /db_xref="CDD:459973" CDS 1..921 /locus_tag="STM4534" /coded_by="NC_003197.2:4792085..4794850" /note="similar to E. coli psp operon transcriptional activator (AAC74385.1); Blastp hit to AAC74385.1 (330 aa), 38% identity in aa 13 - 242" /transl_table=11 /db_xref="GeneID:1256060" CONTIG join(WP_001224211.1:1..921) ORIGIN 1 mrkdallafl mnqtdffdpe nvsevftary laqrfnmqrn tashylnqlv aqgvlckint 61 rpvyflhkqa fsqqfftlsr neyasvaell ahgeqecapd dhfsllighn eslkrpieql 121 ktalfypdgg lpllmtgesg tgksylaqlm heyaiaqall spdapfisfn caqyasnpel 181 laanlfgyvk gaftgaqsdr pgafeaadgg mlfldevhrl saegqeklft wldrgeiyrv 241 gdtaqghpvs vrlvfattee ihstflttfl rripiqvnlp dlqhrsrqek ealillffwt 301 eakklsatli lkprllqiln qyvyrgnvge lknvvkyava tawakkpgqe tvtvslhdlp 361 damlsalpsl nepladdtpv sispdtnltw llrardemqg mihdtqchvl alyelvrsgk 421 egwetvqkrm gdeietlfdr liftgddnvh sqrlllitsq vreefyrlek rfnmqlngnc 481 iyalshylih rtalapsrln seqirqldaf laqkypllys fclqiletlg qkldleprri 541 dmlllalwlh kqgannqkqv thavilahgy atassianva nrllkntife sfdmpldvtp 601 eaiaqqvmry leehplasgl milvdmgslk aihrhfdral stpvtiinnv stsmalyvge 661 rilqghfiee iardiardvp veyqlywpks nkprailttc atgigvatnl callsasipq 721 aleidvvacd yamlasnktq epvfmrydvl aivgtldphi asvpwislds lisgegnhyl 781 mrlfgslttp eqvaeinnll lknfslrrvi esvtildtsk vinhveqfll ryehlagvtv 841 snerkvalyv hisclierli rhagitawsg qqcpeqelnr lreafsvies nysvkiptae 901 lgyihniltf etelieqdqq f