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LOCUS NP_459101 968 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_459101 VERSION NP_459101.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 968) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 968) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 968) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 968) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19060. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..968 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..968 /product="RNA polymerase associated protein" /calculated_mol_wt=109735 Region 2..966 /region_name="PRK04914" /note="RNA polymerase-associated protein RapA" /db_xref="CDD:235319" CDS 1..968 /gene="hepA" /locus_tag="STM0096" /coded_by="complement(NC_003197.2:110002..112908)" /note="putative SNF2 family RNA helicase; similar to E. coli probable ATP-dependent RNA helicase (AAC73170.1); Blastp hit to AAC73170.1 (968 aa), 93% identity in aa 1 - 968" /transl_table=11 /db_xref="GeneID:1251614" CONTIG join(WP_001116976.1:1..968) ORIGIN 1 mpftlgqrwi sdteselglg tvvamdartv tllfpstgen rlyarsdspv trvmfnpgdt 61 itshegwqlh idevkeengl lvyvgtrldt eetnvtlrev lldsklvfsk pqdrlfagqi 121 drmdrfalry rarkfqseqy rmpysglrgq rtnliphqln iahdvgrrha prvlladevg 181 lgktieagmi lhqqllsgaa ervliivpet lqhqwlveml rrfnlrfalf dderyteaqh 241 daynpfeteq lvicsldfar rnkqrlehlc daewdllvvd eahhlvwstd apsreymaie 301 qlaervpgvl lltatpeqlg meshfarlrl ldpnrfhdfe qfveeqknyr pvadavamll 361 agnklsndel nrlgdligeq diepllqaan sdrddaqaar delvsmlmdr hgtsrvlfrn 421 trngvkgfpk relhtvklpl ptqyqtaikv sgimgarksp edrardmlyp eqiyqefegd 481 tgtwwnfdpr vewlmgylts hrsqkvlvic akattalqle qvlreregir aavfhegmsi 541 ierdraaawf aeedtgaqvl lcseigsegr nfqfasnlvm fdlpfnpdll eqrigrldri 601 gqahdiqihv pylektaqsv lvrwyhegld afehtcptgr aiydsayasl inylaapeet 661 dgfddliksc reqhealkaq leqgrdrlle ihsnggekaq qlaqsieeqd ddtnliafam 721 nlfdivginq ddrgdnlivl tpsdhmlvpd fpglpedgct itferdvals redaqfitwe 781 hplirngldl ilsgdtgsst isllknkalp vgtllvelvy vveaqapkql qlnrflpptp 841 vrmlldkngn nlaaqvefet fnrqlsavnr htgsklvnav qqdvhailql getqieksar 901 alidnarrea deklsgelsr lealravnpn irddelaaid snrqqvlesl nqagwrldal 961 rlivvthq