Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NC_004337 4607202 bp DNA circular CON 24-AUG-2016 ACCESSION NC_004337 VERSION NC_004337.2 DBLINK BioProject: PRJNA62907 Assembly: GCF_000006925.2 KEYWORDS RefSeq. SOURCE Shigella flexneri 2a str. 301 ORGANISM Shigella flexneri 2a str. 301 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella. REFERENCE 1 (bases 1 to 4607202) AUTHORS Jin,Q., Yuan,Z., Xu,J., Wang,Y., Shen,Y., Lu,W., Wang,J., Liu,H., Yang,J., Yang,F., Zhang,X., Zhang,J., Yang,G., Wu,H., Qu,D., Dong,J., Sun,L., Xue,Y., Zhao,A., Gao,Y., Zhu,J., Kan,B., Ding,K., Chen,S., Cheng,H., Yao,Z., He,B., Chen,R., Ma,D., Qiang,B., Wen,Y., Hou,Y. and Yu,J. TITLE Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157 JOURNAL Nucleic Acids Res. 30 (20), 4432-4441 (2002) PUBMED 12384590 REFERENCE 2 (bases 1 to 4607202) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-AUG-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4607202) AUTHORS Jin,Q., Shen,Y., Wang,J.H., Liu,H., Yang,J., Yang,F., Zhang,X.B., Zhang,J.Y., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y., Zhao,A.L., Gao,Y.S., Zhu,J.P., Chen,S.X., Yao,Z.J., Wang,Y., Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D. TITLE Direct Submission JOURNAL Submitted (03-AUG-2011) State Key Laboratory for Moleclular Virology and Genetic Engineering, Microbial Genome Center of Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA, Beijing 100176, P.R.China REMARK Sequence update by submitter REFERENCE 4 (bases 1 to 4607202) AUTHORS Jin,Q., Shen,Y., Wang,J.H., Liu,H., Yang,J., Yang,F., Zhang,X.B., Zhang,J.Y., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y., Zhao,A.L., Gao,Y.S., Zhu,J.P., Chen,S.X., Yao,Z.J., Wang,Y., Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D. TITLE Direct Submission JOURNAL Submitted (06-DEC-2004) State Key Laboratory for Moleclular Virology and Genetic Engineering, Microbial Genome Center of Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA, Beijing 100176, P.R.China REMARK Sequence update by submitter REFERENCE 5 (bases 1 to 4607202) AUTHORS Jin,Q., Shen,Y., Wang,J.H., Liu,H., Yang,J., Yang,F., Zhang,X.B., Zhang,J.Y., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y., Zhao,A.L., Gao,Y.S., Zhu,J.P., Chen,S.X., Yao,Z.J., Wang,Y., Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D. TITLE Direct Submission JOURNAL Submitted (21-MAY-2001) State Key Laboratory for Moleclular Virology and Genetic Engineering, Microbial Genome Center of Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA, Beijing 100176, P.R.China COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to AE005674. On Aug 26, 2011 this sequence version replaced NC_004337.1. RefSeq Category: Reference Genome CLI: Clinical Isolate FGS: First Genome sequenced COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..4607202 /organism="Shigella flexneri 2a str. 301" /mol_type="genomic DNA" /strain="301" /serotype="2a" /db_xref="taxon:198214" gene 190..255 /gene="thrL" /locus_tag="SF0001" /db_xref="GeneID:1027248" CDS 190..255 /gene="thrL" /locus_tag="SF0001" /codon_start=1 /transl_table=11 /product="thr operon leader peptide" /protein_id="NP_705961.1" /db_xref="GeneID:1027248" /translation="MKRISTTITTTITITTGNGAG" gene 336..2798 /gene="thrA" /locus_tag="SF0002" /db_xref="GeneID:1023766" CDS 336..2798 /gene="thrA" /locus_tag="SF0002" /codon_start=1 /transl_table=11 /product="bifunctional aspartokinase I/homoserine dehydrogenase I" /protein_id="NP_705962.2" /db_xref="GeneID:1023766" /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT NHLVAMIEKTISGQDALPNISDAERIFAELLTGLAAAQPGFPLAQLKTFVDQEFAQIK HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHY LESTVDIAESTRRIAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACL RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF QIPCLIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAAR VFAAMSRARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAV TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSWLKNKHIDLRVCGVANSKA LLTSVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD FLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLN AGDELVKFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARK LLILARETGRELELADIEIEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEG KVLRYVGNIDEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG NDVTAAGVFADLLRTLSWKLGV" misc_feature 336..2795 /gene="thrA" /locus_tag="SF0002" /note="bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional; Region: thrA; PRK09436" /db_xref="CDD:181856" gene 2800..3732 /gene="thrB" /locus_tag="SF0003" /db_xref="GeneID:1027257" CDS 2800..3732 /gene="thrB" /locus_tag="SF0003" /note="Code: E; COG: COG0083" /codon_start=1 /transl_table=11 /product="homoserine kinase" /protein_id="NP_705963.1" /db_xref="GeneID:1027257" /translation="MVKVYAPASSANMSVGFDVLGAAVAPVDGALLGDVVTVEAAETF SLNNLGRFADKLPSEPRENIVYQCWERFCQELGKQIPVAMTLEKNMPIGSGLGSSACS VVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENDI ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ PELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPDTA QRVADWLGKNYLQNQEGFVHICRLDTAGARVLEN" misc_feature 2803..3723 /gene="thrB" /locus_tag="SF0003" /note="homoserine kinase; Region: thrB; TIGR00191" /db_xref="CDD:129295" gene 3733..5019 /gene="thrC" /locus_tag="SF0004" /db_xref="GeneID:1027287" CDS 3733..5019 /gene="thrC" /locus_tag="SF0004" /note="Code: E; COG: COG0498" /codon_start=1 /transl_table=11 /product="threonine synthase" /protein_id="NP_705964.1" /db_xref="GeneID:1027287" /translation="MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEID EMLKLDFVTRNAKILSAFIGDEIPQEILEERVRAAFAFPAPVANVESDVGCLELFHGP TLAFKDFGGRFMAQMLTHIADDKPVTILTATSGDTGAAVAHAFYGLPNVKVVILYPRG KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSINISR LLAQICYYFEAVAQLPQEARNQLVVSVPSGNFGDLTAGLLAKSFGLPVKRFIAATNVN DTVPRFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDE TTQQTMRELKELGYTSEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGE TLDLPKELAERADLPLLSHNLPADFSALRKLMMNHQ" misc_feature 3736..5001 /gene="thrC" /locus_tag="SF0004" /note="Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan...; Region: Trp-synth-beta_II; cl00342" /db_xref="CDD:444852" misc_feature order(4048..4053,4138..4140,4474..4488,4789..4791, 4858..4863) /gene="thrC" /locus_tag="SF0004" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:107203" misc_feature 4051..4053 /gene="thrC" /locus_tag="SF0004" /note="catalytic residue [active]" /db_xref="CDD:107203" gene 5242..5529 /locus_tag="SF0005" /db_xref="GeneID:1027292" CDS 5242..5529 /locus_tag="SF0005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_705965.2" /db_xref="GeneID:1027292" /translation="MQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWD GGHWRDHGWWKQHYEWRGNRWHPHGPPPPPRHHKKAPHDHHGGHGPGKHHR" misc_feature 5305..>5436 /locus_tag="SF0005" /note="Protein of unknown function (DUF2502); Region: DUF2502; pfam10697" /db_xref="CDD:431443" gene complement(5682..6458) /gene="yaaA" /locus_tag="SF0006" /db_xref="GeneID:1025603" CDS complement(5682..6458) /gene="yaaA" /locus_tag="SF0006" /note="Code: S; COG: COG3022" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_705966.1" /db_xref="GeneID:1025603" /translation="MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPP QISTLMRISDKLAGINAARFHDWQPDFTPANARQAILAFKGDVYTGLQAETFSEDDFD FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARGKDLYQFWGDIITNKLNEALA AQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKKARGLMSRF IIENRLTKPEQLTGFNSEGYFFDEDSSSNGELVFKRYEQR" misc_feature complement(5688..6458) /gene="yaaA" /locus_tag="SF0006" /note="peroxide stress protein YaaA; Region: PRK02101" /db_xref="CDD:234999" gene complement(6528..7958) /gene="yaaJ" /locus_tag="SF0007" /pseudo /db_xref="GeneID:1026734" misc_feature complement(6528..7958) /gene="yaaJ" /locus_tag="SF0007" /note="Similar to Escherichia coli K12 inner membrane transport protein gi: 1786188 (477 aa). BLAST with identity of 98% in 476 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 8074..8358 /locus_tag="SF0008" /db_xref="GeneID:1025737" CDS 8074..8358 /locus_tag="SF0008" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_705967.1" /db_xref="GeneID:1025737" /translation="MYKNGGRYQRSVRNPKQSRLAITVLSAVALTLRRDIIRADRLHP PNKLFKEKYYHDGQIDLPSSVHHRSGRHWGHRGNEAVSTAGCHNQPFSHS" gene 8237..9190 /gene="talB" /locus_tag="SF0009" /db_xref="GeneID:1027387" CDS 8237..9190 /gene="talB" /locus_tag="SF0009" /note="Code: G; COG: COG0176" /codon_start=1 /transl_table=11 /product="transaldolase B" /protein_id="NP_705968.2" /db_xref="GeneID:1027387" /translation="MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ IPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILKLVPGRISTEVDARLS YDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS FAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIYQYYKEHGY ETVVMGASFRNIGEILELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPARI TESEFLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL" misc_feature 8237..9187 /gene="talB" /locus_tag="SF0009" /note="transaldolase B; Provisional; Region: PRK05269" /db_xref="CDD:235381" misc_feature order(8285..8287,8333..8335,8339..8344,8516..8518, 8522..8524,8630..8632,8696..8698,8702..8704,8762..8764, 8777..8779) /gene="talB" /locus_tag="SF0009" /note="active site" /db_xref="CDD:188644" misc_feature order(8546..8548,9071..9073,9080..9082,9092..9097, 9113..9115,9122..9124,9134..9136) /gene="talB" /locus_tag="SF0009" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188644" misc_feature 8630..8632 /gene="talB" /locus_tag="SF0009" /note="catalytic residue [active]" /db_xref="CDD:188644" gene 9305..9892 /gene="mogA" /locus_tag="SF0010" /db_xref="GeneID:1027511" CDS 9305..9892 /gene="mogA" /locus_tag="SF0010" /note="Code: H; COG: COG0521" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein MogA" /protein_id="NP_705969.2" /db_xref="GeneID:1027511" /translation="MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELET RLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAVADREMPGFGEQ MRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKDAEGNVVVHGIFA SVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE" misc_feature 9305..9883 /gene="mogA" /locus_tag="SF0010" /note="molybdenum cofactor biosynthesis protein MogA; Provisional; Region: mogA; PRK09417" /db_xref="CDD:181837" misc_feature order(9527..9535,9623..9625,9701..9706,9716..9718, 9725..9727) /gene="mogA" /locus_tag="SF0010" /note="MPT binding site [active]" /db_xref="CDD:238451" misc_feature order(9533..9535,9539..9544,9548..9550,9560..9562, 9584..9592,9605..9607,9614..9619,9647..9649,9656..9658, 9809..9811) /gene="mogA" /locus_tag="SF0010" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238451" gene complement(9927..10493) /gene="yaaH" /locus_tag="SF0011" /db_xref="GeneID:1027481" CDS complement(9927..10493) /gene="yaaH" /locus_tag="SF0011" /note="Code: R; COG: COG1584" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_705970.1" /db_xref="GeneID:1027481" /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIF YGGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKLGLTDAPNAQFLGVY LGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAIGNIAGNAAIIHFAGWIGLIC GASAIYLAMGEVLNEQFGRTVLPIGESH" misc_feature complement(9930..10493) /gene="yaaH" /locus_tag="SF0011" /note="acetate uptake transporter; Region: PRK10659" /db_xref="CDD:182625" gene complement(10642..11355) /locus_tag="SF0012" /db_xref="GeneID:1027580" CDS complement(10642..11355) /locus_tag="SF0012" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_705971.1" /db_xref="GeneID:1027580" /translation="MNVNYLNDSDLDFLQHCSEEQLANFARLLTHNEKGKTRLSSILM RNELFKSMEGHPEQHRRNWQLIAGELQHFGGDSIANKLRGHGKLYRAILLDVSKRLKL KADKEMSTFEIEQQLLEQFLRNTWKKMDEEHKQEFLHAVDARVNELEELLPLLMKDKL LAKGVSHLLSSQLTRILRTHAAMSVLGHGLLRGAGLGGPVGAALNGVKAVSGSTYRVT IPAVLQIACLRRMVSATQV" misc_feature complement(10645..11355) /locus_tag="SF0012" /note="acidic protein MsyB; Region: PRK10236" /db_xref="CDD:182323" gene complement(11381..11785) /gene="yaaI" /locus_tag="SF0013" /db_xref="GeneID:1027581" CDS complement(11381..11785) /gene="yaaI" /locus_tag="SF0013" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_705972.1" /db_xref="GeneID:1027581" /translation="MKSVFTISASLAISLMLCCTAQANDHKLLGVIAMPRNETNDLAL KLPVCRIVKRIQLSADHGDLQLSGASVYFKAARSASQSLNIPSEIKEGQTTDWININS DNDNKRCVSKITFSGHTVNSSDMATLKIIGDD" misc_feature complement(11384..11785) /gene="yaaI" /locus_tag="SF0013" /note="DUF2541 family protein; Region: PRK10154" /db_xref="CDD:182272" gene 12162..14078 /gene="dnaK" /locus_tag="SF0014" /db_xref="GeneID:1027578" CDS 12162..14078 /gene="dnaK" /locus_tag="SF0014" /note="Code: O; COG: COG0443" /codon_start=1 /transl_table=11 /product="molecular chaperone DnaK" /protein_id="NP_705973.1" /db_xref="GeneID:1027578" /translation="MGKIIGIDLGTTNSCVAIMDGTIPRVLENAEGDRTTPSIIAYTQ DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAW VEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI AGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV LATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI DDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL DVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAAD NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE SALTALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQTAGADASANNAKDD DVVDAEFEEVKDKK" misc_feature 12162..14075 /gene="dnaK" /locus_tag="SF0014" /note="molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290" /db_xref="CDD:234715" gene 14167..15297 /gene="dnaJ" /locus_tag="SF0015" /db_xref="GeneID:1027267" CDS 14167..15297 /gene="dnaJ" /locus_tag="SF0015" /note="Code: O; COG: COG0484" /codon_start=1 /transl_table=11 /product="molecular chaperone DnaJ" /protein_id="NP_705974.2" /db_xref="GeneID:1027267" /translation="MAKQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAE AKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIF GGGRGRQRAARGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQT CPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSVKIPA GVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAMAAL GGEIEVPTLDGRVKLKVPGETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETQIGLD EKDKQLLHELHESYGGPTGEHNSPRSKSFFDGVKKFFDDLTR" misc_feature 14167..15282 /gene="dnaJ" /locus_tag="SF0015" /note="chaperone protein DnaJ; Provisional; Region: PRK10767" /db_xref="CDD:236757" gene complement(15401..15553) /locus_tag="SF0015a" /db_xref="GeneID:16608301" CDS complement(15401..15553) /locus_tag="SF0015a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439227.1" /db_xref="GeneID:16608301" /translation="MKQHKAMIVALIVICITAVVAALVTRKDLCEVHIRTGQTEVAVF TAYESE" misc_feature complement(15413..15535) /locus_tag="SF0015a" /note="Hok/gef family; Region: HOK_GEF; pfam01848" /db_xref="CDD:426473" gene 16140..17306 /gene="nhaA" /locus_tag="SF0016" /db_xref="GeneID:1027500" CDS 16140..17306 /gene="nhaA" /locus_tag="SF0016" /note="Code: P; COG: COG3004" /codon_start=1 /transl_table=11 /product="pH-dependent sodium/proton antiporter" /protein_id="NP_705975.1" /db_xref="GeneID:1027500" /translation="MKHLHRFFSSDASGGIILIIAAILAMIMANSGATSGWYHDFLET PVQLRVGSLEINKNMLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAI GGMIVPALLYLAFNYADPITREGWAIPAATDIAFALGVLALLGSRVPLVLKIFLMALA IIDDLGAIIIIALFYTNDLSMASLGVAAVAIAVLAVLNLCGVRRTGVYILVGVVLWTA VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL QGVTLDGLTSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGIL CGIGFTMSIFIASLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRLRPSV" misc_feature 16140..17303 /gene="nhaA" /locus_tag="SF0016" /note="sodium/proton antiporter NhaA; Region: nhaA; PRK09561" /db_xref="CDD:181955" gene 17372..18271 /gene="nhaR" /locus_tag="SF0017" /db_xref="GeneID:1027434" CDS 17372..18271 /gene="nhaR" /locus_tag="SF0017" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="transcriptional activator NhaR" /protein_id="NP_705976.2" /db_xref="GeneID:1027434" /translation="MSHINYNHLYYFWHVYKEGSVVGAAEALYLTPQTITGQIRALEE RLQGKLFKRKGRGLEPSELGELVYRYADKMFTLSQEMLDIVNYRKESNLLFDVGVADA LSKRLVSSVLNAAVVEGEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQEGL FSVRIGECGVSFWCTNPPPEKPFPACLEERRLLIPGRRSMLGRKLLNWFNSQGLNVEI LGEFDDAALMKAFGAMHNAIFVAPTLYAYDFYADKTVVEIGRVENVMEEYHAIFAERM IQHPAVQRICNTDYSALFSPAVR" misc_feature 17372..18259 /gene="nhaR" /locus_tag="SF0017" /note="transcriptional activator NhaR; Provisional; Region: nhaR; PRK11062" /db_xref="CDD:182938" mobile_element complement(18669..19436) /mobile_element_type="insertion sequence:IS1" gene complement(18684..19079) /gene="insB" /locus_tag="SF0018" /db_xref="GeneID:1027224" CDS complement(18684..19079) /gene="insB" /locus_tag="SF0018" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_705977.1" /db_xref="GeneID:1027224" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERFLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(18687..19076) /gene="insB" /locus_tag="SF0018" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(19106..19381) /gene="insA" /locus_tag="SF0019" /db_xref="GeneID:1024591" CDS complement(19106..19381) /gene="insA" /locus_tag="SF0019" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_705978.1" /db_xref="GeneID:1024591" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<19109..19360) /gene="insA" /locus_tag="SF0019" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(19770..20033) /gene="rpsT" /locus_tag="SF0020" /db_xref="GeneID:1023564" CDS complement(19770..20033) /gene="rpsT" /locus_tag="SF0020" /note="Code: J; COG: COG0268" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S20" /protein_id="NP_705979.5" /db_xref="GeneID:1023564" /translation="MANIKSAKKRAIQSEKARKIIASRRSMMRPFIKKGDAAIEAGDK AAAQKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA" misc_feature complement(19773..20033) /gene="rpsT" /locus_tag="SF0020" /note="Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Region: RpsT; COG0268" /db_xref="CDD:440038" gene 20136..20354 /locus_tag="SF0020a" /db_xref="GeneID:16608302" CDS 20136..20354 /locus_tag="SF0020a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439228.1" /db_xref="GeneID:16608302" /translation="MCRHSLRSDGAGFYQLAGCEYSFSAIKIAAGGQFLPVICSMAMK SHFFLISVLNRRLTLTAVQGILGRFSLF" gene 20362..21303 /gene="ribF" /locus_tag="SF0021" /db_xref="GeneID:1024592" CDS 20362..21303 /gene="ribF" /locus_tag="SF0021" /note="Code: H; COG: COG0196" /codon_start=1 /transl_table=11 /product="bifunctional riboflavin kinase/FMN adenylyltransferase" /protein_id="NP_705980.1" /db_xref="GeneID:1024592" /translation="MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGR KRNLPVMVMLFEPQPLELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAAL TAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEG GVRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQV SPVKGVYAVEVLGLGEKPLPGVANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVL RKKIRNEQRFASLDELKAQIARDELTAREFFGLTKPA" misc_feature 20365..21288 /gene="ribF" /locus_tag="SF0021" /note="bifunctional riboflavin kinase/FAD synthetase; Region: PRK05627" /db_xref="CDD:235536" gene 21346..24162 /gene="ileS" /locus_tag="SF0022" /db_xref="GeneID:1024586" CDS 21346..24162 /gene="ileS" /locus_tag="SF0022" /note="Code: J; COG: COG0060" /codon_start=1 /transl_table=11 /product="isoleucyl-tRNA synthetase" /protein_id="NP_705981.1" /db_xref="GeneID:1024586" /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPI ELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK TEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVD QDALKAKFGVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKD LVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT APGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGA LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWLPDWGQA RIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAW WDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHSSVVDVRPEFAGHAADMYLEGSDQH RGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADI LRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMV VLDRWAVGCAKAAQEDILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKA DSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGL ADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALG DELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTQDVGKV AEHAEICGRCVSNVAGDGEKRKFA" misc_feature 21355..24135 /gene="ileS" /locus_tag="SF0022" /note="Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: IleS; COG0060" /db_xref="CDD:439830" gene 24162..24656 /gene="lspA" /locus_tag="SF0023" /db_xref="GeneID:1024585" CDS 24162..24656 /gene="lspA" /locus_tag="SF0023" /note="Code: N; COG: COG0597" /codon_start=1 /transl_table=11 /product="lipoprotein signal peptidase" /protein_id="NP_705982.1" /db_xref="GeneID:1024585" /translation="MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFP SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVLLAVMMYRSKATQKLNNIAYA LIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSK AKKQ" misc_feature 24162..24653 /gene="lspA" /locus_tag="SF0023" /note="lipoprotein signal peptidase; Region: lspA; TIGR00077" /db_xref="CDD:272893" gene complement(24749..25198) /gene="slpA" /locus_tag="SF0024" /db_xref="GeneID:1025951" CDS complement(24749..25198) /gene="slpA" /locus_tag="SF0024" /note="Code: O; COG: COG1047" /codon_start=1 /transl_table=11 /product="FKBP-type peptidylprolyl isomerase" /protein_id="NP_705983.1" /db_xref="GeneID:1025951" /translation="MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASL SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFT AMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA" misc_feature complement(24752..25198) /gene="slpA" /locus_tag="SF0024" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK15095" /db_xref="CDD:237908" gene 25256..25705 /gene="slpA" /locus_tag="SF0025" /db_xref="GeneID:1024588" CDS 25256..25705 /gene="slpA" /locus_tag="SF0025" /note="Code: O; COG: COG1047" /codon_start=1 /transl_table=11 /product="FKBP-type peptidylprolyl isomerase" /protein_id="NP_705984.1" /db_xref="GeneID:1024588" /translation="MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASL SEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFT AMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA" misc_feature 25256..25702 /gene="slpA" /locus_tag="SF0025" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK15095" /db_xref="CDD:237908" gene 25707..26657 /gene="ispH" /locus_tag="SF0026" /db_xref="GeneID:1024589" CDS 25707..26657 /gene="ispH" /locus_tag="SF0026" /note="Code: IM; COG: COG0761" /codon_start=1 /transl_table=11 /product="4-hydroxy-3-methylbut-2-enyl diphosphate reductase" /protein_id="NP_705985.2" /db_xref="GeneID:1024589" /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY VVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEK LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVL VVGSKNSSNSNRLAELAQRMGKHAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQ NVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD" misc_feature 25707..26609 /gene="ispH" /locus_tag="SF0026" /note="4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed; Region: ispH; PRK01045" /db_xref="CDD:234893" misc_feature order(25740..25742,25992..25994,26295..26297) /gene="ispH" /locus_tag="SF0026" /note="Fe-S cluster binding site [ion binding]; other site" /db_xref="CDD:260116" misc_feature order(25749..25751,25824..25829,25923..25928,26076..26078, 26082..26084,26205..26210,26376..26387,26511..26513) /gene="ispH" /locus_tag="SF0026" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:260116" misc_feature order(26076..26078,26082..26084,26379..26381,26385..26387) /gene="ispH" /locus_tag="SF0026" /note="catalytic site [active]" /db_xref="CDD:260116" gene 26723..27637 /gene="yaaF" /locus_tag="SF0027" /db_xref="GeneID:1024590" CDS 26723..27637 /gene="yaaF" /locus_tag="SF0027" /note="Code: F; COG: COG1957" /codon_start=1 /transl_table=11 /product="ribonucleoside hydrolase RihC" /protein_id="NP_705986.1" /db_xref="GeneID:1024590" /translation="MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEK TTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGESGMAGYDFVEHNRKPLGIP AFLAIRDALMRAPEPVTLVAIGPLTNIALLLLQCPECKPYIRRLVIMGGSAGRGNCTP NAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPELNRTGKMLHALF SHYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLG KPANVQVALDLNVKGFQQWVAEVLALVP" misc_feature 26723..27634 /gene="yaaF" /locus_tag="SF0027" /note="ribonucleoside hydrolase RihC; Provisional; Region: PRK10768" /db_xref="CDD:182713" misc_feature order(26750..26752,26762..26767,26837..26839,26960..26962, 27089..27091,27191..27193,27209..27211,27215..27217, 27422..27424) /gene="yaaF" /locus_tag="SF0027" /note="active site" /db_xref="CDD:239117" misc_feature order(26930..26932,27122..27124,27245..27247,27491..27493, 27497..27502,27509..27511) /gene="yaaF" /locus_tag="SF0027" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:239117" gene 27804..28625 /gene="dapB" /locus_tag="SF0028" /db_xref="GeneID:1024579" CDS 27804..28625 /gene="dapB" /locus_tag="SF0028" /note="Code: E; COG: COG0289" /codon_start=1 /transl_table=11 /product="4-hydroxy-tetrahydrodipicolinate reductase" /protein_id="NP_705987.1" /db_xref="GeneID:1024579" /translation="MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSL LGSDAGELAGAGKTGVTVQSSLDAIKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIG TTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHH RHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVG EHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNNL" misc_feature 27816..28610 /gene="dapB" /locus_tag="SF0028" /note="4-hydroxy-tetrahydrodipicolinate reductase; Region: dapB; TIGR00036" /db_xref="CDD:129147" gene 29081..30229 /gene="carA" /locus_tag="SF0029" /db_xref="GeneID:1024582" CDS 29081..30229 /gene="carA" /locus_tag="SF0029" /note="Code: EF; COG: COG0505" /codon_start=1 /transl_table=11 /product="carbamoyl phosphate synthase small subunit" /protein_id="NP_705988.2" /db_xref="GeneID:1024582" /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT DPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAK EVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTI VPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLA LASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEATLPANLRVTHKSLFD GTLQGIHRIDKPAFSFQGHPEASPGPHDAAPLFDHFIKLIEQYRKTAK" misc_feature 29081..30205 /gene="carA" /locus_tag="SF0029" /note="Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Region: CarA; COG0505" /db_xref="CDD:440271" gene 30247..33468 /gene="carB" /locus_tag="SF0030" /db_xref="GeneID:1027515" CDS 30247..33468 /gene="carB" /locus_tag="SF0030" /note="Code: EF; COG: COG0458" /codon_start=1 /transl_table=11 /product="carbamoyl phosphate synthase large subunit" /protein_id="NP_705989.1" /db_xref="GeneID:1027515" /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL ERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAA DVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEM EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGAERIWYIADAFRAGLSVD GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGV REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLG GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV DRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT AVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKA TGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST GEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELD ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIR RSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK" misc_feature 30247..33453 /gene="carB" /locus_tag="SF0030" /note="carbamoyl-phosphate synthase large subunit; Region: carB; PRK05294" /db_xref="CDD:235393" gene 33730..34125 /gene="caiF" /locus_tag="SF0031" /db_xref="GeneID:1024584" CDS 33730..34125 /gene="caiF" /locus_tag="SF0031" /note="of cai operon" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_705990.4" /db_xref="GeneID:1024584" /translation="MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNT LTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVR KTPRIPAVPLTELNREQKWQMMLSKSMRR" misc_feature 33784..34122 /gene="caiF" /locus_tag="SF0031" /note="carnitine metabolism transcriptional regulator CaiF; Region: PRK11476" /db_xref="CDD:183154" gene complement(34211..34822) /gene="caiE" /locus_tag="SF0032" /db_xref="GeneID:1024558" CDS complement(34211..34822) /gene="caiE" /locus_tag="SF0032" /note="Code: R; COG: COG0663" /codon_start=1 /transl_table=11 /product="carnitine operon protein CaiE" /protein_id="NP_705991.1" /db_xref="GeneID:1024558" /translation="MERTLTTVSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYI GPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDA LVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKR LNTKEYQDLVGRCHASLHETQPLRQMEENRPRLQGTTDVTPKR" misc_feature complement(34214..34801) /gene="caiE" /locus_tag="SF0032" /note="carnitine operon protein CaiE; Provisional; Region: PRK13627" /db_xref="CDD:184189" gene complement(34807..35700) /gene="caiD" /locus_tag="SF0033" /db_xref="GeneID:1024587" CDS complement(34807..35700) /gene="caiD" /locus_tag="SF0033" /note="Code: I; COG: COG1024" /codon_start=1 /transl_table=11 /product="carnitinyl-CoA dehydratase" /protein_id="NP_705992.1" /db_xref="GeneID:1024587" /translation="MKRQGTTLPANNHALKQYAFFAGMLSSLKKQKWRKGMSESLHLT RNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDL KAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADN ASFALPEAKLGIVPDSGGVLRLPKILPPTIVNEMVMTGRRMGAEEALRWGIVNRVVSQ AELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHS EDAIEGPLAFAEKRDPVWKGR" misc_feature complement(34810..35592) /gene="caiD" /locus_tag="SF0033" /note="crotonobetainyl-CoA hydratase; Region: PRK03580" /db_xref="CDD:179599" misc_feature complement(order(35191..35193,35200..35205,35269..35277, 35281..35283,35395..35409,35419..35421,35518..35520, 35524..35526)) /gene="caiD" /locus_tag="SF0033" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(35269..35271,35401..35403)) /gene="caiD" /locus_tag="SF0033" /note="oxyanion hole (OAH) forming residues [active]" /db_xref="CDD:119339" misc_feature complement(order(35005..35010,35017..35019,35062..35064, 35071..35073,35104..35106,35113..35118,35122..35127, 35131..35136,35149..35154,35158..35166,35170..35172, 35188..35199,35233..35244,35305..35307,35329..35331)) /gene="caiD" /locus_tag="SF0033" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(35701..37269) /gene="caiC" /locus_tag="SF0034" /db_xref="GeneID:1024583" CDS complement(35701..37269) /gene="caiC" /locus_tag="SF0034" /note="Code: IQ; COG: COG0318" /codon_start=1 /transl_table=11 /product="crotonobetaine/carnitine-CoA ligase" /protein_id="NP_705993.1" /db_xref="GeneID:1024583" /translation="MDRGAMDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYS YLELNQEINRTANLFYTLGIRKGNKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLL REESEWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQ LKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRD DDVYMTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQAQKYRATITECIPM MIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGII GDRPSDKRRWPSIGRAGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYFLNP KATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPK IQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDL PRNCSGKIIRKNLK" misc_feature complement(35704..37254) /gene="caiC" /locus_tag="SF0034" /note="putative crotonobetaine/carnitine-CoA ligase; Validated; Region: caiC; PRK08008" /db_xref="CDD:181195" gene complement(37328..38545) /gene="caiB" /locus_tag="SF0035" /db_xref="GeneID:1024543" CDS complement(37328..38545) /gene="caiB" /locus_tag="SF0035" /note="Code: C; COG: COG1804" /codon_start=1 /transl_table=11 /product="crotonobetainyl-CoA:carnitine CoA-transferase" /protein_id="NP_705994.1" /db_xref="GeneID:1024543" /translation="MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIE NVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFA RRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQP MPAFPYTADYFSGLTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNG GEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPE GTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVKERFAELNIACAKVLTVPELESNPQY VARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDI QELVSKGLAKVED" misc_feature complement(37331..38545) /gene="caiB" /locus_tag="SF0035" /note="L-carnitine CoA-transferase; Region: PRK03525" /db_xref="CDD:179589" gene complement(38674..39816) /gene="caiA" /locus_tag="SF0036" /db_xref="GeneID:1024569" CDS complement(38674..39816) /gene="caiA" /locus_tag="SF0036" /note="Code: I; COG: COG1960" /codon_start=1 /transl_table=11 /product="crotonobetainyl-CoA dehydrogenase" /protein_id="NP_705995.1" /db_xref="GeneID:1024569" /translation="MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVK ALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGRLGAPTYVLYQLPGGFNTFLREGT QEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSA YTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELD EKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRF QLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQ VLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR" misc_feature complement(38677..39816) /gene="caiA" /locus_tag="SF0036" /note="crotonobetainyl-CoA dehydrogenase; Validated; Region: PRK03354" /db_xref="CDD:179566" gene complement(39847..41361) /gene="caiT" /locus_tag="SF0037" /db_xref="GeneID:1024556" CDS complement(39847..41361) /gene="caiT" /locus_tag="SF0037" /note="Code: M; COG: COG1292" /codon_start=1 /transl_table=11 /product="L-carnitine/gamma-butyrobetaine antiporter" /protein_id="NP_705996.1" /db_xref="GeneID:1024556" /translation="MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVF SYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSA AVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYF FFVRKMEVIRPSSTLVPLAGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTEC MQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIV SGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIF LARISRGRTVRELCFGMVMGLTASTWILWTVLGSNTLLLMDKNIINIPNLIEQYGVAR AIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRI GWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD" misc_feature complement(39850..41361) /gene="caiT" /locus_tag="SF0037" /note="L-carnitine/gamma-butyrobetaine antiport BCCT transporter; Region: PRK03356" /db_xref="CDD:179568" gene 41681..42487 /gene="fixA" /locus_tag="SF0038" /db_xref="GeneID:1024559" CDS 41681..42487 /gene="fixA" /locus_tag="SF0038" /note="Code: C; COG: COG2086" /codon_start=1 /transl_table=11 /product="flavoprotein subunit" /protein_id="NP_705997.4" /db_xref="GeneID:1024559" /translation="MNDVSFMISGDAMKIITCYKCVPDEQDIAVNNADGSLDFSKADA KISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDD QFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSK IISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVW SAADIGFNAVDAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI" misc_feature 41717..42484 /gene="fixA" /locus_tag="SF0038" /note="putative electron transfer flavoprotein FixA; Reviewed; Region: PRK03359" /db_xref="CDD:179569" gene 42502..43293 /locus_tag="SF0039" /db_xref="GeneID:1025953" CDS 42502..43293 /locus_tag="SF0039" /note="Code: C; COG: COG2025" /codon_start=1 /transl_table=11 /product="flavoprotein" /protein_id="NP_705998.1" /db_xref="GeneID:1025953" /translation="MNTFSQVWVFSDTPSRLPELMNGAQALANQINAFVLNDADGAQA IQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYR LKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDAS RTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLC KAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISG" misc_feature 42502..43290 /locus_tag="SF0039" /note="electron transfer flavoprotein subunit alpha/FixB family protein; Region: fixB; PRK03363" /db_xref="CDD:235120" gene 43494..44780 /gene="fixC" /locus_tag="SF0040" /db_xref="GeneID:1024551" CDS 43494..44780 /gene="fixC" /locus_tag="SF0040" /note="Code: C; COG: COG0644" /codon_start=1 /transl_table=11 /product="oxidoreductase FixC" /protein_id="NP_705999.1" /db_xref="GeneID:1024551" /translation="MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN VTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRS YSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVLLAD GVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTD GLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEY SAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSA MKSDDFSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNPRMFSGNPELAVGVARDLFT IDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL" misc_feature 43494..44777 /gene="fixC" /locus_tag="SF0040" /note="putative oxidoreductase FixC; Provisional; Region: PRK10157" /db_xref="CDD:182273" gene 44777..45064 /gene="fixX" /locus_tag="SF0041" /db_xref="GeneID:1024565" CDS 44777..45064 /gene="fixX" /locus_tag="SF0041" /note="Code: C; COG: COG2440" /codon_start=1 /transl_table=11 /product="ferredoxin-like protein FixX" /protein_id="NP_706000.1" /db_xref="GeneID:1024565" /translation="MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQVLELLVKACP AGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG" misc_feature 44777..45061 /gene="fixX" /locus_tag="SF0041" /note="ferredoxin-like protein FixX; Provisional; Region: PRK15449" /db_xref="CDD:185346" gene 45123..46517 /gene="yaaU" /locus_tag="SF0042" /db_xref="GeneID:1024566" CDS 45123..46517 /gene="yaaU" /locus_tag="SF0042" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_706001.1" /db_xref="GeneID:1024566" /translation="MQPSRNFDDLKFSSIHRRILLWGSGGPFLDGYVLVMIGVALEQL TPALKLDADWIGLLGAGTLAGLFVGTSLFGYISDKVGRRKMFLIDIIAIGVISVATMC VSSPVELLVMRVLIGIVIGADYPIATSMITEFSSTRQRAFSISFIAAMWYVGATCADL VGYWLYDVEGGWRWMLGSAAIPCLLILIGRFELPESPRWLLRKGRVKECEEMMIKLFG EPVAFDEEQPQQTRFRDLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGSLGLG VGKNAALGNVVISLFFMLGCIPPMLWLNTAGRRPLLIGSFAMMTLALAVLGLIPDMGI WLVVMAFAVYAFFSGGPGNLQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPI FINNYGISNTMLMGAGISLFGLLISVAFAPETRGMSLAQTSNMTIRGQRMGLFVQISL FSESILLTISRVNI" misc_feature 45180..46376 /gene="yaaU" /locus_tag="SF0042" /note="Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily; Region: MFS_SV2_like; cd17316" /db_xref="CDD:340874" misc_feature order(45210..45215,45222..45227,45234..45236,45330..45332, 45480..45485,45489..45497,45504..45506,45564..45566, 45573..45578,45585..45587,45876..45878,45885..45890, 45897..45905,45912..45914,45996..45998,46008..46010, 46161..46166,46176..46178,46188..46190,46236..46238, 46245..46250,46257..46262,46269..46271) /gene="yaaU" /locus_tag="SF0042" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340874" gene 46565..47095 /gene="yabF" /locus_tag="SF0043" /db_xref="GeneID:1027514" CDS 46565..47095 /gene="yabF" /locus_tag="SF0043" /note="Code: R; COG: COG2249" /codon_start=1 /transl_table=11 /product="glutathione-regulated potassium-efflux system ancillary protein KefF" /protein_id="NP_706002.1" /db_xref="GeneID:1027514" /translation="MILIIYAHPYPHHSHANKRMLEQARTLEGVEIRSLYQLYPDFNI DIAAEQEALSRADLIVWQHPMQWYSIPPLLKLWIDKVLSHGWAYGHGGTALHGKHLLW AVTTGGGESHFEIGAHPGFDVLSQPLQATAIYCGLNWLPPFAMHCTFICDDETLEGQA RHYKQRLLEWQEAHHG" misc_feature 46565..47092 /gene="yabF" /locus_tag="SF0043" /note="glutathione-regulated potassium-efflux system oxidoreductase KefF; Region: PRK00871" /db_xref="CDD:234852" gene 47088..48950 /gene="kefC" /locus_tag="SF0044" /db_xref="GeneID:1024570" CDS 47088..48950 /gene="kefC" /locus_tag="SF0044" /note="Code: P; COG: COG0475" /codon_start=1 /transl_table=11 /product="glutathione-regulated potassium-efflux system protein KefC" /protein_id="NP_706003.1" /db_xref="GeneID:1024570" /translation="MDSHTLVQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW GLRLVTDAESILHFAEIGVVLMLFIIGLELDPQRLWKLRAAVFGGGALQMVICGGLLG LFCMLLGLRWQVAELIGMTLALSSTAIAMQAMNERNLMVTQMGRSAFAVLLFQDIAAI PLVAMIPLLAASSASTTMGAFALSALKVAGALVLVVLLGRYVTRPALRFVARSGLREV FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF FIGVGMSIDFGTLIENPLRIVILLLGFLIIKIAMLWLIARPLQVPNKQRRWFAVLLGQ GSEFAFVVFGAAQMANVLEPEWAKSLTLAVALSMAATPILLVILNRLEQSSTEEAREA DEIDEEQPRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA TRMDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARDVDHYIRLRQ AGVEKPERETFEGALKTGRLALESLGLGPYEARERADVFRRFNIQMVEEMAMVENDTK ARAAVYKRTSAMLSEIITEDREHLSLIQRHGWQGTEEGKHTGNMADEPETKPSS" misc_feature 47088..48947 /gene="kefC" /locus_tag="SF0044" /note="glutathione-regulated potassium-efflux system protein KefC; Provisional; Region: PRK03562" /db_xref="CDD:235131" gene 49141..49620 /gene="folA" /locus_tag="SF0045" /db_xref="GeneID:1024577" CDS 49141..49620 /gene="folA" /locus_tag="SF0045" /note="Code: H; COG: COG0262" /codon_start=1 /transl_table=11 /product="dihydrofolate reductase" /protein_id="NP_706004.2" /db_xref="GeneID:1024577" /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVIMGR HTWESIGRPLPGRKNIILSSQPGTDDRVTWVKSVDEAIAACGDVPEIMVIGGGRVYEQ FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR" misc_feature 49141..49617 /gene="folA" /locus_tag="SF0045" /note="type 3 dihydrofolate reductase; Region: folA; PRK10769" /db_xref="CDD:182714" misc_feature order(49153..49155,49204..49206,49219..49221,49309..49311, 49420..49422,49438..49440,49477..49479) /gene="folA" /locus_tag="SF0045" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:238127" misc_feature order(49159..49161,49180..49182,49270..49278,49330..49332, 49423..49434) /gene="folA" /locus_tag="SF0045" /note="NADP+ binding site [chemical binding]; other site" /db_xref="CDD:238127" gene complement(49698..50540) /gene="apaH" /locus_tag="SF0046" /db_xref="GeneID:1024575" CDS complement(49698..50540) /gene="apaH" /locus_tag="SF0046" /note="Code: T; COG: COG0639" /codon_start=1 /transl_table=11 /product="diadenosine tetraphosphatase" /protein_id="NP_706005.1" /db_xref="GeneID:1024575" /translation="MATYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPG SLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL RRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP NNWSPELRGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPEEAPAPLKPWFAIPGPVA EEYSIAFGHWASLEGKGTPEGIYALDTGCCWGGSLTCLRWEDKQYFVQPSNRHKDLGE AAAS" misc_feature complement(49704..50540) /gene="apaH" /locus_tag="SF0046" /note="bis(5'-nucleosyl)-tetraphosphatase (symmetrical); Region: apaH; TIGR00668" /db_xref="CDD:273208" gene complement(50547..50924) /gene="apaG" /locus_tag="SF0047" /db_xref="GeneID:1024567" CDS complement(50547..50924) /gene="apaG" /locus_tag="SF0047" /note="Code: P; COG: COG2967" /codon_start=1 /transl_table=11 /product="CO2+/MG2+ efflux protein ApaG" /protein_id="NP_706006.1" /db_xref="GeneID:1024567" /translation="MINSPRVCIQVQSVYIEAQSSPDNERYVFAYTVTIRNLGRAPVQ LLGRYWLITNGNGRETEVQGEGVVGVQPLIAPGEEYQYTSGAIIETPLGTMQGHYEMI DENGVPFSIDIPVFRLAVPTLIH" misc_feature complement(50550..50924) /gene="apaG" /locus_tag="SF0047" /note="CO2+/MG2+ efflux protein ApaG; Reviewed; Region: apaG; PRK05461" /db_xref="CDD:180098" gene complement(50927..51748) /gene="ksgA" /locus_tag="SF0048" /db_xref="GeneID:1024571" CDS complement(50927..51748) /gene="ksgA" /locus_tag="SF0048" /note="Code: J; COG: COG0030" /codon_start=1 /transl_table=11 /product="16S ribosomal RNA methyltransferase KsgA/Dim1 family protein" /protein_id="NP_706007.1" /db_xref="GeneID:1024571" /translation="MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEI GPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE KMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRL SVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDIRVLSRITTEAF NQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPLQES" misc_feature complement(50945..51748) /gene="ksgA" /locus_tag="SF0048" /note="16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) [Translation, ribosomal structure and biogenesis]; Region: RsmA; COG0030" /db_xref="CDD:439801" gene complement(51745..52734) /gene="pdxA" /locus_tag="SF0049" /db_xref="GeneID:1024548" CDS complement(51745..52734) /gene="pdxA" /locus_tag="SF0049" /note="Code: H; COG: COG1995" /codon_start=1 /transl_table=11 /product="4-hydroxythreonine-4-phosphate dehydrogenase" /protein_id="NP_706008.1" /db_xref="GeneID:1024548" /translation="MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLT DRAAMLGLPLTLRPYSPNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLA RACDGCLNGEFAALITGPVHKGVINDASIPFTGHTEFFEERSQAKKVVMMLATEELRV ALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM GTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ GFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ" misc_feature complement(51748..52734) /gene="pdxA" /locus_tag="SF0049" /note="4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed; Region: pdxA; PRK00232" /db_xref="CDD:234696" gene complement(52734..54020) /gene="surA" /locus_tag="SF0050" /db_xref="GeneID:1024578" CDS complement(52734..54020) /gene="surA" /locus_tag="SF0050" /note="Code: O; COG: COG0760" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase SurA" /protein_id="NP_706009.1" /db_xref="GeneID:1024578" /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG LMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIAN IAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESL AQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIA HSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGE SKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGS ANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAA QKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN" misc_feature complement(52737..53966) /gene="surA" /locus_tag="SF0050" /note="peptidyl-prolyl cis-trans isomerase SurA; Provisional; Region: PRK10770" /db_xref="CDD:236758" gene complement(54073..56427) /gene="imp" /locus_tag="SF0051" /db_xref="GeneID:1024572" CDS complement(54073..56427) /gene="imp" /locus_tag="SF0051" /note="Code: M; COG: COG1452" /codon_start=1 /transl_table=11 /product="LPS assembly outer membrane complex protein LptD" /protein_id="NP_706010.1" /db_xref="GeneID:1024572" /translation="MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQ GDTNDLPVTINADHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVR TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN RYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVPIFYSPYLQL PVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF RYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKV SDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEP QLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTE AKFLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTL EPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRI YDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRG GIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYHYASPEYIQATLPKYYSTAEQYKNGI SQVGAVASRPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWD NDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL" misc_feature complement(54082..56427) /gene="imp" /locus_tag="SF0051" /note="LPS assembly outer membrane complex protein LptD; Provisional; Region: PRK03761" /db_xref="CDD:235158" gene 56682..57497 /gene="djlA" /locus_tag="SF0052" /db_xref="GeneID:1024576" CDS 56682..57497 /gene="djlA" /locus_tag="SF0052" /note="Code: O; COG: COG1076" /codon_start=1 /transl_table=11 /product="Dna-J like membrane chaperone protein" /protein_id="NP_706011.2" /db_xref="GeneID:1024576" /translation="MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWF ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFR VGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEE LGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDA TTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK" misc_feature 56682..57494 /gene="djlA" /locus_tag="SF0052" /note="co-chaperone DjlA; Region: djlA; PRK09430" /db_xref="CDD:236512" gene complement(57645..58331) /gene="yabO" /locus_tag="SF0053" /db_xref="GeneID:1024562" CDS complement(57645..58331) /gene="yabO" /locus_tag="SF0053" /note="Code: J; COG: COG0564" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706012.1" /db_xref="GeneID:1024562" /translation="MASGCPAFDRCNASVTEPKMGMENYNPPQEPWLVILYQDDHIMV VNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAEREL KRQFREREPKKQYVARVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEV VEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARADGTAFVATCRD VDDYPSGVWQ" misc_feature complement(57711..58274) /gene="yabO" /locus_tag="SF0053" /note="Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi); Region: PseudoU_synth; cl00130" /db_xref="CDD:469624" misc_feature complement(order(57780..57782,58083..58094)) /gene="yabO" /locus_tag="SF0053" /note="active site" /db_xref="CDD:211346" gene complement(58286..61192) /gene="hepA" /locus_tag="SF0054" /db_xref="GeneID:1024561" CDS complement(58286..61192) /gene="hepA" /locus_tag="SF0054" /note="Code: KL; COG: COG0553" /codon_start=1 /transl_table=11 /product="ATP-dependent helicase HepA" /protein_id="NP_706013.1" /db_xref="GeneID:1024561" /translation="MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYA RSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFL DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLN IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE MLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDL LVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPN RFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSD SEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKV SGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLV ICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG SEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW YHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKSCREQHEALKAQLE QGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVL TPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGS STISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV EFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKL SAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ" misc_feature complement(58295..61189) /gene="hepA" /locus_tag="SF0054" /note="RNA polymerase-associated protein RapA; Region: PRK04914" /db_xref="CDD:235319" gene complement(61357..63708) /gene="polB" /locus_tag="SF0055" /db_xref="GeneID:1024581" CDS complement(61357..63708) /gene="polB" /locus_tag="SF0055" /note="Code: L; COG: COG0417" /codon_start=1 /transl_table=11 /product="DNA polymerase II" /protein_id="NP_706014.1" /db_xref="GeneID:1024581" /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAF IHADQVPRAQHILQGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVT VYEADVRPPERYLMERFITSPVWVEGDMHNGTIVNARLKPHPDYRPPLKWVSIDIETT RHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVASRPLLLEKLNAWFANHDPD VIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIID GIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLK DCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLG EVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS TEGFLDAWFSREKHCLPEIVTNIWHGRDKAKRQGNKPLSQALKIIMNAFYGVLGTTAC RFFDPRLASSITMRGHQIMRQTKALIEAQGYDIIYGDTDSTFVWLKGAHSEEEAAKIG RALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEG DKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYVRQTIDKLMAGELDARL VYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPL DYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF" misc_feature complement(61360..63708) /gene="polB" /locus_tag="SF0055" /note="DNA polymerase II; Reviewed; Region: PRK05762" /db_xref="CDD:235595" gene complement(63783..64478) /gene="araD" /locus_tag="SF0056" /db_xref="GeneID:1024568" CDS complement(63783..64478) /gene="araD" /locus_tag="SF0056" /note="Code: G; COG: COG0235" /codon_start=1 /transl_table=11 /product="L-ribulose-5-phosphate 4-epimerase" /protein_id="NP_706015.1" /db_xref="GeneID:1024568" /translation="MLKDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPS GVDYSVMTADDMVVVSIETGEVVEGTKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHAT IWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDA AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKH YLRKHGAKAYYGQ" misc_feature complement(63786..64478) /gene="araD" /locus_tag="SF0056" /note="L-ribulose-5-phosphate 4-epimerase AraD; Region: araD; PRK08193" /db_xref="CDD:236181" misc_feature complement(order(63822..63824,63882..63884,63903..63905, 63915..63917,63936..63938,63969..63971,64086..64088, 64128..64133,64137..64139,64158..64166,64179..64184, 64188..64190,64329..64334,64338..64340,64410..64412, 64434..64436,64446..64448)) /gene="araD" /locus_tag="SF0056" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238232" misc_feature complement(order(63966..63968,64188..64190,64194..64196, 64251..64259,64344..64349,64395..64397)) /gene="araD" /locus_tag="SF0056" /note="active site" /db_xref="CDD:238232" misc_feature complement(order(63966..63968,64188..64190,64194..64196)) /gene="araD" /locus_tag="SF0056" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238232" gene complement(64678..66175) /gene="araA" /locus_tag="SF0057" /pseudo /db_xref="GeneID:1025954" misc_feature complement(64678..66175) /gene="araA" /locus_tag="SF0057" /note="Similar to Escherichia coli K12 L-arabinose isomerase gi: 1786248 (501 aa). BLAST with identity of 98% in 499 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(66190..67890) /gene="araB" /locus_tag="SF0058" /db_xref="GeneID:1024532" CDS complement(66190..67890) /gene="araB" /locus_tag="SF0058" /note="Code: C; COG: COG1069" /codon_start=1 /transl_table=11 /product="ribulokinase" /protein_id="NP_706016.1" /db_xref="GeneID:1024532" /translation="MAIAIGLDFGSDSVRALAVDCASGEEIATSVEWYPRWQKGQFCD APNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVL ALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKI LHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLP PASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCH MGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAG QSAFGDIYAWFGRVLGWPLEQLAAQHPELKAQINASQKQLLPALTEAWAKNPSLDHLP VVLDWFNGRRTPNANQRLKGVITDLNLATDTPLLFGGLIAATAFGARAIMECFTDQGI AVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP SAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVATL " misc_feature complement(66232..67890) /gene="araB" /locus_tag="SF0058" /note="ribulokinase; Provisional; Region: PRK04123" /db_xref="CDD:235221" gene 68229..69107 /gene="araC" /locus_tag="SF0059" /db_xref="GeneID:1024542" CDS 68229..69107 /gene="araC" /locus_tag="SF0059" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator AraC" /protein_id="NP_706017.2" /db_xref="GeneID:1024542" /translation="MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG YILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGCHPEAREWYHQWVYFRPRA YWHEWLNWPSIFANTGFFRPDEAHQPYFSDLFGQIINAGQGEGRYSELLAMNLLEQLL LRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF RAGCEEKVNDVAVKLS" misc_feature 68229..69083 /gene="araC" /locus_tag="SF0059" /note="arabinose operon transcriptional regulator AraC; Region: PRK10572" /db_xref="CDD:236717" gene 69193..69957 /gene="yabI" /locus_tag="SF0060" /db_xref="GeneID:1024574" CDS 69193..69957 /gene="yabI" /locus_tag="SF0060" /note="Code: S; COG: COG0586" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706018.1" /db_xref="GeneID:1024574" /translation="MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAG LGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTE HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGI LAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLL WLTPLISAIGVVALVVLIRHPLMPVYIDILRKVVGV" misc_feature 69193..69804 /gene="yabI" /locus_tag="SF0060" /note="Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family [Cell wall/membrane/envelope biogenesis]; Region: DedA; COG0586" /db_xref="CDD:440351" gene complement(70071..70769) /gene="thiQ" /locus_tag="SF0061" /db_xref="GeneID:1024580" CDS complement(70071..70769) /gene="thiQ" /locus_tag="SF0061" /note="Code: G; COG: COG1130" /codon_start=1 /transl_table=11 /product="thiamine ABC transporter ATP-binding subunit" /protein_id="NP_706019.2" /db_xref="GeneID:1024580" /translation="MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNL IAGFLTPASGSLTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKL NAAQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSAL DPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGKTEEVL SGKGSASAIWGIQG" misc_feature complement(70080..70769) /gene="thiQ" /locus_tag="SF0061" /note="thiamine ABC transporter ATP-binding protein ThiQ; Region: thiQ; PRK10771" /db_xref="CDD:182716" misc_feature complement(70653..70676) /gene="thiQ" /locus_tag="SF0061" /note="Walker A/P-loop; other site" /db_xref="CDD:213265" misc_feature complement(order(70206..70208,70305..70310,70536..70538, 70650..70658,70662..70667)) /gene="thiQ" /locus_tag="SF0061" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213265" misc_feature complement(70536..70547) /gene="thiQ" /locus_tag="SF0061" /note="Q-loop/lid; other site" /db_xref="CDD:213265" misc_feature complement(70353..70382) /gene="thiQ" /locus_tag="SF0061" /note="ABC transporter signature motif; other site" /db_xref="CDD:213265" misc_feature complement(70305..70322) /gene="thiQ" /locus_tag="SF0061" /note="Walker B; other site" /db_xref="CDD:213265" misc_feature complement(70287..70298) /gene="thiQ" /locus_tag="SF0061" /note="D-loop; other site" /db_xref="CDD:213265" misc_feature complement(70200..70220) /gene="thiQ" /locus_tag="SF0061" /note="H-loop/switch region; other site" /db_xref="CDD:213265" gene complement(70753..72363) /gene="thiP" /locus_tag="SF0062" /db_xref="GeneID:1024545" CDS complement(70753..72363) /gene="thiP" /locus_tag="SF0062" /note="Code: H; COG: COG1178" /codon_start=1 /transl_table=11 /product="thiamine ABC transporter permease" /protein_id="NP_706020.1" /db_xref="GeneID:1024545" /translation="MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGNWV AVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLIL PVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQ ALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG GGPQATTIELAIYQALSYDYDPARAAMLALLQMVCCLGLVLLSQRLSKAIAPGTTLLQ GWRDPDDRLHSRICDTVLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTS LRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFL LLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRL KVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGA VTALILLLLCFLLFTVIEKLPGRNVKTD" misc_feature complement(70759..72333) /gene="thiP" /locus_tag="SF0062" /note="thiamine transporter membrane protein; Reviewed; Region: thiP; PRK09433" /db_xref="CDD:181853" gene complement(72339..73322) /gene="tbpA" /locus_tag="SF0063" /db_xref="GeneID:1024573" CDS complement(72339..73322) /gene="tbpA" /locus_tag="SF0063" /note="Code: H; COG: COG1840" /codon_start=1 /transl_table=11 /product="thiamine ABC transporter substrate-binding subunit" /protein_id="NP_706021.2" /db_xref="GeneID:1024573" /translation="MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPKIKKAF EANCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVA ADAVNVPGGWNNDTFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRT STPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTS PAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIP TGNWMYPVANVTLPAGFEQLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR" misc_feature complement(72342..73268) /gene="tbpA" /locus_tag="SF0063" /note="thiamine ABC transporter, periplasmic binding protein; Region: thiB; TIGR01276" /db_xref="CDD:130343" misc_feature complement(order(72669..72674,72678..72680,72729..72737, 72834..72839)) /gene="tbpA" /locus_tag="SF0063" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270263" gene complement(73486..75141) /gene="yabN" /locus_tag="SF0064" /db_xref="GeneID:1024539" CDS complement(73486..75141) /gene="yabN" /locus_tag="SF0064" /note="Code: EP; COG: COG0747" /codon_start=1 /transl_table=11 /product="transcriptional regulator SgrR" /protein_id="NP_706022.2" /db_xref="GeneID:1024539" /translation="MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLL NTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKAT VRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEE NGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIT DIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPCEWETLSNFASHPIGTGPYAVIRN STNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEKKEIESRLEEG CYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHART IKSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIES DIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQADAARWRNGEMNLANWCQQLVA SKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP" misc_feature complement(73489..75141) /gene="yabN" /locus_tag="SF0064" /note="HTH-type transcriptional regulator SgrR; Region: PRK13626" /db_xref="CDD:184188" gene 75463..76641 /gene="yabM" /locus_tag="SF0065" /db_xref="GeneID:1024538" CDS 75463..76641 /gene="yabM" /locus_tag="SF0065" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_706023.1" /db_xref="GeneID:1024538" /translation="MIWIMTMARRMNGVYAAFMLVAFMMGVAGALQAPTLSLFLSREV GAQPFWIGLFYTVNAIAGIGVSLWLAKRSDSQGDRRKLIIFCCLMAIGNALLFAFNRH YLTLITCGVLLASLANTAMPQLFALAREYADNSAREVVMFSSVMRAQLSLAWVIGPPL AFMLALNYGFTVMFSIAAGIFTLSLVLIAFMLLSVARVELPSENALSMQGDWQDSNVR MLFVASTLMWTCNTMYIIDMPLWISSDLGLPDKLAGFLMGTAAGLEIPAMILAGYYVK RYGKRRMMVIAVVAGVLFYTGLIFFHSRMALMTLQLFNAVFIGIVAGIGMLWFQDLMP GRAGAATTLFTNTISTGVILAGVIQGAIAQSWGHFAVYWVIAIISVVALFLTAKVKDV " misc_feature 75511..76635 /gene="yabM" /locus_tag="SF0065" /note="sugar efflux transporter; Region: 2A0120; TIGR00899" /db_xref="CDD:129977" gene complement(76690..77295) /gene="leuD" /locus_tag="SF0066" /db_xref="GeneID:1024536" CDS complement(76690..77295) /gene="leuD" /locus_tag="SF0066" /note="Code: E; COG: COG0066" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydratase small subunit" /protein_id="NP_706024.1" /db_xref="GeneID:1024536" /translation="MAEKFIKHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF NDWRFLDEKGQQPNPDFVLNFPQYQGASILLARENFGCGSSREHAPWALTDYGFKVVI APSFADIFYGNSFNNQLLPVKLSDAEVDELFALVKANPGIHFDVDLEAQEVKAGEKTY RFTIDAFRRHCMMNGLDSIGLTLQHDDAIASYEAKQPAFMN" misc_feature complement(76696..77289) /gene="leuD" /locus_tag="SF0066" /note="3-isopropylmalate dehydratase small subunit; Region: leuD; PRK01641" /db_xref="CDD:179314" misc_feature complement(77038..77046) /gene="leuD" /locus_tag="SF0066" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238809" gene complement(77306..78706) /gene="leuC" /locus_tag="SF0067" /db_xref="GeneID:1024527" CDS complement(77306..78706) /gene="leuC" /locus_tag="SF0067" /note="Code: E; COG: COG0065" /codon_start=1 /transl_table=11 /product="isopropylmalate isomerase large subunit" /protein_id="NP_706025.1" /db_xref="GeneID:1024527" /translation="MAKTLYEKLFDAHVVYEAENETPLLYIDRHLVHEVTSPQAFDGL RAHGRPVRQPGKTFATMDHNVSTQTKDINACGEMARIQMQELIKNCKEFGVELYDLNH PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ GRAKTMKIEVQGKAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGEAIRDLSMEGRMT LCNMAIEMGAKAALVAPDETTFNYVKGRLHAPKGKDFDDAVAYWKTLQTDEGATFDTV VTLQAEEISPQVTWGTNPGQVISVNDNIPDPASFADPVERASAEKALAYMGLKPGIPL TEVAIDKVFIGSCTNSRIEDLRAAAEIAKGRKVAPGVQALVVPGSGPVKAQAEAEGLD KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA AAAAVTGHFADIRNIK" misc_feature complement(77309..78706) /gene="leuC" /locus_tag="SF0067" /note="3-isopropylmalate dehydratase large subunit; Region: PRK05478" /db_xref="CDD:235490" misc_feature complement(order(77402..77404,77417..77419,77474..77476, 78320..78325,78599..78601,78608..78610)) /gene="leuC" /locus_tag="SF0067" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153133" misc_feature complement(order(77420..77422,77474..77479,77486..77488, 77666..77668,78317..78319)) /gene="leuC" /locus_tag="SF0067" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153133" gene complement(78709..79803) /gene="leuB" /locus_tag="SF0068" /db_xref="GeneID:1024533" CDS complement(78709..79803) /gene="leuB" /locus_tag="SF0068" /note="Code: E; COG: COG0473" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="NP_706026.3" /db_xref="GeneID:1024533" /translation="MMSKNYHIAVLPGDGIGPEVMTQALKVLNAVRNRFAMRITTSHY DVGGAAIDNHGQPLPPATVEGCEQADAVLFGSVGGPKWEHLPPDQQPERGALLPLRKH FKLFSNLRPAKLYQGLEAFCPLRADIAANGFDIQCVRELTGGIYFGQPKGREGSGQYE KAFDTEVYHRFEIERIARIAFESARKRRHKVTSIDKANVLQSSILWREIVNEIATEYP DVELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQ GFGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDADDAASAIERAINRALEEG IRTGDLARGAAAVSTDEMGDIIARYVAEGV" misc_feature complement(78715..79794) /gene="leuB" /locus_tag="SF0068" /note="3-isopropylmalate dehydrogenase; Provisional; Region: PRK00772" /db_xref="CDD:234832" gene complement(79800..81371) /gene="leuA" /locus_tag="SF0069" /db_xref="GeneID:1024546" CDS complement(79800..81371) /gene="leuA" /locus_tag="SF0069" /note="Code: E; COG: COG0119" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="NP_706027.1" /db_xref="GeneID:1024546" /translation="MSQQVIIFDTTLRDGEQALQASLSVKEKLQIALALERMGVDVME VGFPVSSPGDFESVQTIARQVKNSRVCALARCVEKDIDVAAESLKVAEAFRIHTFIAT SPMHIATKLRSTLDEVIERAIYMVKRARNYTDDVEFSCEDAGRTPIADLARVVEAAIN AGATTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGLAVGNSLAAV HAGARQVEGAMNGIGERAGNCSLEEVIMAIKVRKDILNVHTAINHQEIWRTSQLVSQI CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR AAVKHRMDEMGYKESEYNLDNLYDAFLKLADKKGQVFDYDLEALAFIGKQQEEPEHFR LDYFSVQSGSNDIATAAVKLACGEEVKAEAANGNGPVDAVYQAINRITDYNVELVKYS LTAKGHGKDALGQVDIVTNYNGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE LQRKTQHNENNKETV" misc_feature complement(79836..81371) /gene="leuA" /locus_tag="SF0069" /note="2-isopropylmalate synthase; Validated; Region: PRK00915" /db_xref="CDD:234864" misc_feature complement(order(80760..80762,80766..80768,80859..80861, 80865..80867,80949..80951,80955..80957,81081..81083, 81147..81149,81240..81242,81321..81323,81330..81335)) /gene="leuA" /locus_tag="SF0069" /note="active site" /db_xref="CDD:163678" misc_feature complement(order(81240..81242,81330..81335)) /gene="leuA" /locus_tag="SF0069" /note="catalytic residues [active]" /db_xref="CDD:163678" misc_feature complement(order(80760..80762,80766..80768)) /gene="leuA" /locus_tag="SF0069" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163678" gene complement(81464..81550) /gene="leuL" /locus_tag="SF0070" /db_xref="GeneID:1024519" CDS complement(81464..81550) /gene="leuL" /locus_tag="SF0070" /codon_start=1 /transl_table=11 /product="leu operon leader peptide" /protein_id="NP_706028.1" /db_xref="GeneID:1024519" /translation="MTHIVRFIGLLLLNASSLRGRRVSGIQH" misc_feature complement(81467..81550) /gene="leuL" /locus_tag="SF0070" /note="leu operon leader peptide; Provisional; Region: PRK09925" /db_xref="CDD:137592" gene 82032..83153 /gene="leuO" /locus_tag="SF0071" /db_xref="GeneID:1024560" CDS 82032..83153 /gene="leuO" /locus_tag="SF0071" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="transcriptional activator for leuABCD operon" /protein_id="NP_706029.3" /db_xref="GeneID:1024560" /translation="MTHSTAMDSVFIRTRIFMFSEFYSFCFFLFYMHDKSYSSGLFLC IPIRERELSVTVELSMPEVQTDHSETAELSKPQLRMVDLNLLTVFDAVMQEQNITRAA HVLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELP GSGFEPASSERVFHLCVCSPLDSILTSQIYNHIEQIAPNIHVMFKSSLNQNTEHQLRY QETEFVISYEDFHRPEFTSVPLFKDEMVLVASKNHPTIKGPLLKHDVYNEQHAAVSLD RFASFSQPWYDTVDKQASIAYQGMAMMSVLSVVSQTHLVAIAPRWLAEEFAESLELQV LPLPLKQNSRTCYLSWHEAAGRDKGHQWMEEQLVSICKR" misc_feature 82209..83150 /gene="leuO" /locus_tag="SF0071" /note="leucine transcriptional activator; Reviewed; Region: leuO; PRK09508" /db_xref="CDD:181918" gene 83387..85195 /gene="ilvI" /locus_tag="SF0072" /db_xref="GeneID:1025955" CDS 83387..85195 /gene="ilvI" /locus_tag="SF0072" /note="Code: EH; COG: COG0028" /codon_start=1 /transl_table=11 /product="acetolactate synthase III large subunit" /protein_id="NP_706030.4" /db_xref="GeneID:1025955" /translation="MSLAANCLSKIGRLMCFTHFFRQTVRQAMEMLSGAEMVVRSLID QGVKQVFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVT SGPGATNAITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLV KQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVCPESVSMRSYNPTTT GHKGQIKRALQTLVAAKKPVVYVGGGAIMAGCHQQLKETVEALNLPVVSSLMGMGAFP ATHRQALGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDID PTSISKTVTADIPIVGDARQVLEQMLELLSQESAHQPLDEIRDWWQQIEQWRALQCLK YDTHSEKIKPQAVIETLWRLTNGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLGT MGFGLPAALGVKMALPEETVVCVTGDGSIQMNIQELSTALQYELPVLVVNLNNRYLGM VKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGIQISHPHELESKLSEALEQVRNN RLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT" misc_feature 83471..85192 /gene="ilvI" /locus_tag="SF0072" /note="acetolactate synthase 3 large subunit; Region: PRK07979" /db_xref="CDD:181185" gene 85198..85689 /gene="ilvH" /locus_tag="SF0073" /db_xref="GeneID:1024544" CDS 85198..85689 /gene="ilvH" /locus_tag="SF0073" /note="Code: E; COG: COG0440" /codon_start=1 /transl_table=11 /product="acetolactate synthase small subunit" /protein_id="NP_706031.2" /db_xref="GeneID:1024544" /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGRDEVK RNTEIFRGQIIDVTPSLYTVQLAGTSDKLDAFLASIRDVAKIVEVARSGVVGLSRGDK IMR" misc_feature 85198..85683 /gene="ilvH" /locus_tag="SF0073" /note="acetolactate synthase 3 regulatory subunit; Reviewed; Region: ilvH; PRK11895" /db_xref="CDD:183365" gene 85701..85787 /gene="fruL" /locus_tag="SF0074" /db_xref="GeneID:1024557" CDS 85701..85787 /gene="fruL" /locus_tag="SF0074" /codon_start=1 /transl_table=11 /product="fruR leader peptide" /protein_id="NP_706032.1" /db_xref="GeneID:1024557" /translation="MRNLQPNMSRWAFFAKSVGTWNKSSCRS" gene 85869..86873 /gene="fruR" /locus_tag="SF0075" /db_xref="GeneID:1024540" CDS 85869..86873 /gene="fruR" /locus_tag="SF0075" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator FruR" /protein_id="NP_706033.1" /db_xref="GeneID:1024540" /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVV GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVHFLYAN SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDN ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIKRNLYRRGVLSRS " misc_feature 85869..86852 /gene="fruR" /locus_tag="SF0075" /note="catabolite repressor/activator; Region: PRK11303" /db_xref="CDD:236897" mobile_element 86941..87708 /mobile_element_type="insertion sequence:IS1" gene 86996..87271 /gene="insA" /locus_tag="SF0076" /db_xref="GeneID:1024537" CDS 86996..87271 /gene="insA" /locus_tag="SF0076" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706034.1" /db_xref="GeneID:1024537" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 87017..>87268 /gene="insA" /locus_tag="SF0076" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 87298..87693 /gene="insB" /locus_tag="SF0077" /db_xref="GeneID:1027517" CDS 87298..87693 /gene="insB" /locus_tag="SF0077" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706035.1" /db_xref="GeneID:1027517" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 87301..87690 /gene="insB" /locus_tag="SF0077" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 88252..88710 /gene="yabB" /locus_tag="SF0078" /db_xref="GeneID:1024547" CDS 88252..88710 /gene="yabB" /locus_tag="SF0078" /note="Code: S; COG: COG2001" /codon_start=1 /transl_table=11 /product="cell division protein MraZ" /protein_id="NP_706036.2" /db_xref="GeneID:1024547" /translation="MFRGATLVNLDSKGRLSVPTRYREQLLENAAGQMVCTIDIHHPC LLLYPLPEWEIIEQKLSRLLSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA GLTKEVMLVGQFNKFELWDETTWHQQVKEDIDAEQLATGDLSERLQDLSL" misc_feature 88252..88704 /gene="yabB" /locus_tag="SF0078" /note="protein domain of unknown function (UPF0040) includes MraZ; Region: MraZ; cl03563" /db_xref="CDD:470838" misc_feature order(88486..88488,88492..88494,88576..88578,88597..88599, 88624..88629,88636..88638) /gene="yabB" /locus_tag="SF0078" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293784" misc_feature 88510..88524 /gene="yabB" /locus_tag="SF0078" /note="DXXXR [structural motif]; Region: DXXXR" /db_xref="CDD:293784" gene 88712..89653 /gene="mraW" /locus_tag="SF0079" /db_xref="GeneID:1024552" CDS 88712..89653 /gene="mraW" /locus_tag="SF0079" /note="Code: M; COG: COG0275" /codon_start=1 /transl_table=11 /product="16S rRNA m(4)C1402 methyltransferase" /protein_id="NP_706037.1" /db_xref="GeneID:1024552" /translation="MMENYKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ LGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDL GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEEHF AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE IEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGPQVPAGLPMTEEQLKKL GGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA" misc_feature 88712..89644 /gene="mraW" /locus_tag="SF0079" /note="16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; Region: RmsH; COG0275" /db_xref="CDD:440044" gene 89650..90015 /gene="ftsL" /locus_tag="SF0080" /db_xref="GeneID:1024550" CDS 89650..90015 /gene="ftsL" /locus_tag="SF0080" /note="Code: D; COG: COG3116" /codon_start=1 /transl_table=11 /product="cell division protein FtsL" /protein_id="NP_706038.1" /db_xref="GeneID:1024550" /translation="MISRVTEALSKVKGSMGSHERHALPGVIGDDLLRFGKLPLCLFI CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT EKLQMQHVDPSQENIVVQK" misc_feature 89698..90012 /gene="ftsL" /locus_tag="SF0080" /note="cell division protein FtsL; Provisional; Region: PRK10772" /db_xref="CDD:182717" gene 90031..91797 /gene="ftsI" /locus_tag="SF0081" /db_xref="GeneID:1024510" CDS 90031..91797 /gene="ftsI" /locus_tag="SF0081" /note="Code: M; COG: COG0768" /codon_start=1 /transl_table=11 /product="peptidoglycan synthase FtsI" /protein_id="NP_706039.1" /db_xref="GeneID:1024510" /translation="MKAAAKTQKPKRQEEHANFISWRFALLCGCILLALAFLLGRVAW LQVISPDMLVKEGDMRSLRVQQVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG GISVGDRWKALANALNIPLDQLSARINANPKGRFIYLARQVNSDMADYIKKLKLPGIH LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA NSPSYNPNNLSGTPKEAMRNRTITDVFEPGSTVKPMVVMTALQRGVVRENSVLNTIPY RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALTMPSSALVDTYSRFGLGKATNLG LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD PPVPGERVFPESIVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD ALTTGDKNEFVINQGEGTGGRS" misc_feature 90034..91767 /gene="ftsI" /locus_tag="SF0081" /note="peptidoglycan synthase FtsI; Provisional; Region: PRK15105" /db_xref="CDD:185060" gene 91784..93271 /gene="murE" /locus_tag="SF0082" /db_xref="GeneID:1024503" CDS 91784..93271 /gene="murE" /locus_tag="SF0082" /note="Code: M; COG: COG0769" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase" /protein_id="NP_706040.1" /db_xref="GeneID:1024503" /translation="MADRNLRDLLAPWVPDAPSRALREMTLDSRVAAAGDLFVAVVGH QADGRRYIPQAIAQGVAAIIAEAKDEATDGEIREMHGVPVIYLSQLNERLSALAGRFY HEPSDNLRLVGVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG SAVDVQHELAGLVDQGATFCAMEVSSHGLVQHRVAALKFPASVFTNLSRDHLDYHGDM EHYEAAKWLLYSEHHCGQAIINADDEVGRRWLAKLPDAVAVSMEDHINPNCHGRWLKA TEVNYHDSGATIRFSSSWGDGEIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAA RLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK GKRPLMGAIAEEFADVAVVTDDNPRTEEPRAIINDILAGMLDAGHAKVMEGRAEAVTC AVMQAKENDVVLVAGKGHEDYQIVGNQRLDYSDRVTVARLLGGIA" misc_feature 91784..93265 /gene="murE" /locus_tag="SF0082" /note="UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional; Region: murE; PRK00139" /db_xref="CDD:234660" gene 93268..94626 /gene="murF" /locus_tag="SF0083" /db_xref="GeneID:1024563" CDS 93268..94626 /gene="murF" /locus_tag="SF0083" /note="Code: M; COG: COG0770" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase" /protein_id="NP_706041.1" /db_xref="GeneID:1024563" /translation="MISVTLSQLTDILNGELQGADITLDAVTTDTRKLTPGCLFVALK GERFDAHDFADQAKAGGAGALLVSRPLDIDLPQLIVKDTRLAFGELAAWVRQQVPALV VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIELG ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIFSGLPENGIAIMN ADNNDWLNWQSVIGSRKVWRFSPNAANSDFTATNIHVTSHGMEFTLQTPTGSVDVLLP LPGRHNIANALAAAALSMSVGATLDAIKAGLANLKAVPGRLFPIQLAENQLLLDDSYN ANVGSMTAAVQVLAEMPGYRVLVVGDMAELGAESEACHVQVGEAAKAAGIDRVLSMGK QSHAISTASGVGEHFADKTALITRLKSLIAEQQVITILVKGSRSAAMEEVVRALQENG TC" misc_feature 93268..94623 /gene="murF" /locus_tag="SF0083" /note="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed; Region: murF; PRK10773" /db_xref="CDD:182718" gene 94620..95702 /gene="mraY" /locus_tag="SF0084" /db_xref="GeneID:1024554" CDS 94620..95702 /gene="mraY" /locus_tag="SF0084" /note="Code: M; COG: COG0472" /codon_start=1 /transl_table=11 /product="phospho-N-acetylmuramoyl-pentapeptide- transferase" /protein_id="NP_706042.1" /db_xref="GeneID:1024554" /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM IAHLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTAIVISVLLWAYPSNPYVWCVL VVLVGYGVIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLAGKDTPATQL VVPFFKDVMPQLGLFYILLAYFVIVGTGNAVNLTDGLDGLAIMPTVFVAGGFALVAWA TGNMNFASYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP EPRVIVRFWIISLMLVLIGLATLKVR" misc_feature 94728..95699 /gene="mraY" /locus_tag="SF0084" /note="phospho-N-acetylmuramoyl-pentapeptide-transferase; Region: mraY; TIGR00445" /db_xref="CDD:161884" misc_feature 94962..94967 /gene="mraY" /locus_tag="SF0084" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:133462" misc_feature 95409..95420 /gene="mraY" /locus_tag="SF0084" /note="putative catalytic motif [active]" /db_xref="CDD:133462" misc_feature order(95568..95570,95586..95600) /gene="mraY" /locus_tag="SF0084" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:133462" gene 95705..97021 /gene="murD" /locus_tag="SF0085" /db_xref="GeneID:1024564" CDS 95705..97021 /gene="murD" /locus_tag="SF0085" /note="Code: M; COG: COG0771" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase" /protein_id="NP_706043.1" /db_xref="GeneID:1024564" /translation="MADYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL DKLPEAVERHTGSLNDEWLMAADLIVASPGIALAHPSLSAAADAGIEIVGDIELFCRE AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELS SFQLETTSSLQAVAATILNVTEDHMDRYPFGLQQYRAAKLRIYENAKVCVVNADDALT MPIRGADERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALVA LALADAAGLPRASSLKALTTFTGLPHRFEVVLEHNGVRWINDSKATNVGSTEAALNGL HVDGTLHLLLGGDGKSADFSPLVRYLNGDNVRLYCFGRDGAQLAALRPEVAEQTETME QAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGNEFARLAKELG" misc_feature 95711..97015 /gene="murD" /locus_tag="SF0085" /note="UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; Region: MurD; COG0771" /db_xref="CDD:440534" gene 97021..98265 /gene="ftsW" /locus_tag="SF0086" /db_xref="GeneID:1024522" CDS 97021..98265 /gene="ftsW" /locus_tag="SF0086" /note="Code: D; COG: COG0772" /codon_start=1 /transl_table=11 /product="cell division protein FtsW" /protein_id="NP_706044.2" /db_xref="GeneID:1024522" /translation="MRLSLPRLKMPRLPGFSILVWISTALKGWVMGSREKDTDSLIMY DRTLLWLTFGLAAIGFIMVTSASMPIGQRLTNDPFFFAKRDGVYLILAFILAIITLRL PMEFWQRYSATMLLGSIILLMIVLVVGSAVKGASRWIDLGLLRIQPAELTKLSLFCYI ANYLVRKGDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAK LWQFIAIIGMGISAVVLLILAEPYRIRRVTAFWNPWEDPFGSGYQLTQSLMAFGRGEL WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYVGVVLALLMVFFVAFRAMSIGRKAL EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM MLLRIDYETRLEKAQAFVRGSR" misc_feature 97051..98262 /gene="ftsW" /locus_tag="SF0086" /note="cell division protein FtsW; Provisional; Region: PRK10774" /db_xref="CDD:182719" gene 98262..99329 /gene="murG" /locus_tag="SF0087" /db_xref="GeneID:1024509" CDS 98262..99329 /gene="murG" /locus_tag="SF0087" /note="Code: M; COG: COG0707" /codon_start=1 /transl_table=11 /product="undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase" /protein_id="NP_706045.1" /db_xref="GeneID:1024509" /translation="MSGQGKRLMVMAGGTGGHVFPGLAVAHYLMAQGWQVRWLGTADR MEADLVPKHGIEIDFIRISGLRGKGIKALIAAPLRIFNAWRQARAIMKAYKPDVVLGM GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAFPGAFPNAEVVGN PVRTDVLALPLPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGDSVTIWHQS GKGSQQSVEQAYAEAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA LFVPFQHKDRQQYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGWSRETLLTMAERAR AASIPDATERVANEVSRAARA" misc_feature 98277..99326 /gene="murG" /locus_tag="SF0087" /note="undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional; Region: murG; PRK00726" /db_xref="CDD:234825" gene 99383..100858 /gene="murC" /locus_tag="SF0088" /db_xref="GeneID:1024549" CDS 99383..100858 /gene="murC" /locus_tag="SF0088" /note="Code: M; COG: COG0773" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramate--L-alanine ligase" /protein_id="NP_706046.1" /db_xref="GeneID:1024549" /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY QISGSDLAPNPVTQQLLNLGATIYFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG VHARLGHGRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYQGDFENLKQTFINFL HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR QDKEPMCVTLNAPGRHNALNAAAAVAVATEEGIDDEAILRALESFQGTGRRFDFLGEF PLEPVNGKSGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRFTRTRDLYD DFANVLTQVDTLLMLEVYPAGEAPIPGADSRSLCRTIRGRGKIDPILVPDPAQVAEML APVLTGNDLILVQGAGNIGKIARSLAEIKLKPQTPEEEQHD" misc_feature 99443..100810 /gene="murC" /locus_tag="SF0088" /note="UDP-N-acetylmuramate--L-alanine ligase; Region: murC; TIGR01082" /db_xref="CDD:273433" gene 100851..101771 /gene="ddl" /locus_tag="SF0089" /db_xref="GeneID:1024534" CDS 100851..101771 /gene="ddl" /locus_tag="SF0089" /note="Code: M; COG: COG1181" /codon_start=1 /transl_table=11 /product="D-alanine--D-alanine ligase" /protein_id="NP_706047.1" /db_xref="GeneID:1024534" /translation="MTDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKE VDVTQLKSMGFQKVFIALHGRGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKL LWQGAGLPVAPWVALTRAEFEKGLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAE NALQDALRLAFQHDEEVLIEKWLSGPEFTVAILGEEILPSIRIQPSGTFYDYEAKYLS DETQYFCPAGLEASQEANLQALVLKAWTTLGCKGWGRIDVMLDSDGQFYLLEANTSPG MTSHSLVPMAARQAGMSFSQLVVRILELAD" misc_feature 100851..101768 /gene="ddl" /locus_tag="SF0089" /note="D-alanine--D-alanine ligase; Reviewed; Region: ddl; PRK01372" /db_xref="CDD:234948" gene 101773..102603 /gene="ftsQ" /locus_tag="SF0090" /db_xref="GeneID:1024529" CDS 101773..102603 /gene="ftsQ" /locus_tag="SF0090" /note="Code: M; COG: COG1589" /codon_start=1 /transl_table=11 /product="cell division protein FtsQ" /protein_id="NP_706048.1" /db_xref="GeneID:1024529" /translation="MSQAALNTRNSEEEVSSRRNNGTRLAGILFLLTVLTTVLVSGWV VLSWMEDAQRLPLSKLVLTGERHYTRNDDIRQSILALGEPGTFMTQDVNIIQTQIEQR LPWIKQVSVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPPDRTSKQVLPML YGPEGSANEVLQGYREMGQMLAKDRFTLKEAAMTARRSWQLTLNNDIKLNLGRGDTMK RLVRFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESTQQQNQAQAEQQ " misc_feature 101773..102564 /gene="ftsQ" /locus_tag="SF0090" /note="cell division protein FtsQ; Provisional; Region: PRK10775" /db_xref="CDD:182720" gene 102600..103862 /gene="ftsA" /locus_tag="SF0091" /db_xref="GeneID:1024541" CDS 102600..103862 /gene="ftsA" /locus_tag="SF0091" /note="Code: D; COG: COG0849" /codon_start=1 /transl_table=11 /product="cell division protein FtsA" /protein_id="NP_706049.1" /db_xref="GeneID:1024541" /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL ITCHNDMAKNIVKAVERCGLKVDQLIFAGLASSYSVLTEDERELGVCVVDIGGGTMDI AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEKLRQQGVKHHLAAGIVL TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN GEAEVEKRVTASVGSWIKRLNSWLRKEF" misc_feature 102600..103859 /gene="ftsA" /locus_tag="SF0091" /note="cell division protein FtsA; Reviewed; Region: ftsA; PRK09472" /db_xref="CDD:181887" gene 103923..105074 /gene="ftsZ" /locus_tag="SF0092" /db_xref="GeneID:1024507" CDS 103923..105074 /gene="ftsZ" /locus_tag="SF0092" /note="Code: D; COG: COG0206" /codon_start=1 /transl_table=11 /product="cell division protein FtsZ" /protein_id="NP_706050.2" /db_xref="GeneID:1024507" /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDRDALRAALEGADMVFIAA GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS EMGYAMMGSGVASGENRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLGLVEVE TVGNTIRAFASGNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP VMDRYQQHGMAPLTQEQKPVAKVVNDNAPQTAKEPDYLDIPAFVRKQAD" misc_feature 103992..105059 /gene="ftsZ" /locus_tag="SF0092" /note="Cell division GTPase FtsZ [Cell cycle control, cell division, chromosome partitioning]; Region: FtsZ; COG0206" /db_xref="CDD:439976" gene 105175..106092 /gene="lpxC" /locus_tag="SF0093" /db_xref="GeneID:1025956" CDS 105175..106092 /gene="lpxC" /locus_tag="SF0093" /note="Code: M; COG: COG0774" /codon_start=1 /transl_table=11 /product="UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase" /protein_id="NP_706051.1" /db_xref="GeneID:1025956" /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFKPYNGFSLDFTID FNHPAIDSSNQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVL AKQEAWEYVTFQDDAELPLAFKAPSAVLA" misc_feature 105178..106077 /gene="lpxC" /locus_tag="SF0093" /note="UDP-3-0-acyl N-acetylglucosamine deacetylase; Region: lpxC; TIGR00325" /db_xref="CDD:273014" gene 106248..106835 /gene="yacA" /locus_tag="SF0094" /db_xref="GeneID:1024505" CDS 106248..106835 /gene="yacA" /locus_tag="SF0094" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706052.4" /db_xref="GeneID:1024505" /translation="MLWTSGFNDKICALNTFEFDRDGNNVSGILTRWRQFGKRYFWPH LLLGMVAASLGLPALSNAAEPNAPAKATTRNHEPSAKVNFGQLALLEANTRRPNSNYS VDYWHQHAIRTVIRHLSFAMAPQTLPVAEESLPLQAQHLALLDTLSALLTQEGTPSEK GYRIDYAHFTPQAKFSTPVWISQAQGIRAGPQRLT" misc_feature 106326..106829 /gene="yacA" /locus_tag="SF0094" /note="secA regulator SecM; Region: PRK02943" /db_xref="CDD:235088" gene 106897..109602 /gene="secA" /locus_tag="SF0095" /db_xref="GeneID:1024511" CDS 106897..109602 /gene="secA" /locus_tag="SF0095" /note="Code: N; COG: COG0653" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecA" /protein_id="NP_706053.1" /db_xref="GeneID:1024511" /translation="MLIKLLTKVFGSRNDRTLRRMRKVVNIINAMEPEMEKLSDEELK GKTAEFRARLEKGEVLENLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNERCIAEM RTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPG MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE ARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTE RGLVLIEELLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVI IVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGMTG TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQ PVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPAAVTIATNMAG RGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRR IDNQLRGRSGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYSQRNELLDVSDVSETINSIRED VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLDLPITEWLDKEPELHEETLRERIL AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD PKQEYKRESFSMFAAMLESLKYEVISTLSKVQVRMPEEVEELEQQRRMEAERLAQMQQ LSHQDDDSAAAAALAAQTGERKVGRNDPCPCGSGKKYKQCHGRLQ" misc_feature 106900..109599 /gene="secA" /locus_tag="SF0095" /note="Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport]; Region: SecA; COG0653" /db_xref="CDD:440418" gene 109662..110051 /gene="mutT" /locus_tag="SF0096" /db_xref="GeneID:1024514" CDS 109662..110051 /gene="mutT" /locus_tag="SF0096" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="nucleoside triphosphate pyrophosphohydrolase" /protein_id="NP_706054.1" /db_xref="GeneID:1024514" /translation="MKKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGE TPEQAVVRELQEEVGITPQHFSLFEKLEYEFPDRHITLWFWLVESWEGVPWGKEGQPG EWMSLVGLNADDFPPANEPVIAKLKRL" misc_feature 109662..110048 /gene="mutT" /locus_tag="SF0096" /note="8-oxo-dGTP diphosphatase MutT; Region: PRK10776" /db_xref="CDD:182721" gene complement(110066..110200) /locus_tag="SF0097" /db_xref="GeneID:1024513" CDS complement(110066..110200) /locus_tag="SF0097" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706055.1" /db_xref="GeneID:1024513" /translation="MAIFPKAMTGAKSQSSDICLMPHVGLIRRGQRRIRHLVQMSDAA " gene complement(110151..110348) /gene="yacG" /locus_tag="SF0098" /db_xref="GeneID:1027518" CDS complement(110151..110348) /gene="yacG" /locus_tag="SF0098" /note="Code: S; COG: COG3024" /codon_start=1 /transl_table=11 /product="DNA gyrase inhibitor" /protein_id="NP_706056.1" /db_xref="GeneID:1027518" /translation="MSETITVNCPTCGKTVVWGEISPFRPFCSKRCQLIDLGEWAAEE KRIPSSGDLSESDDWSEEPKQ" misc_feature complement(110163..110348) /gene="yacG" /locus_tag="SF0098" /note="DNA gyrase inhibitor YacG; Region: PRK00418" /db_xref="CDD:234754" gene complement(110358..111101) /gene="yacF" /locus_tag="SF0099" /db_xref="GeneID:1024523" CDS complement(110358..111101) /gene="yacF" /locus_tag="SF0099" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706057.1" /db_xref="GeneID:1024523" /translation="MQTQVLFEHPLNEKMRTWLRIEFLIQQLTVNLPIVDHAGALHFF RNVSELLDVFERGEVRTELLKELNRQQRKLQTWIGVPGVDQSRIEALIQQLKAAVSVL ISAPRIGQFLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLPQAQRDSQVETWIAS LNPLTQALTMVLDLIRQSAPFRKQTSLNGFYQDNGGDADLLRLNLSLDSQLYPQISGH KSRFAIRFMPLDTENGQVPERLDFELACC" misc_feature complement(110361..111101) /gene="yacF" /locus_tag="SF0099" /note="cell division protein ZapD; Region: PRK05287" /db_xref="CDD:235389" gene complement(111101..111721) /gene="coaE" /locus_tag="SF0100" /db_xref="GeneID:1024517" CDS complement(111101..111721) /gene="coaE" /locus_tag="SF0100" /note="Code: H; COG: COG0237" /codon_start=1 /transl_table=11 /product="dephospho-CoA kinase" /protein_id="NP_706058.1" /db_xref="GeneID:1024517" /translation="MGYIVALTGGIGSGKSTVANAFADLGINVIDADIIARQVVEPGA PALHAIADHFGENMIAADGTLQRRALRERIFANPEEKNWLNDLLHPLIQQETQHQIQQ ATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRDDVTREHVEQILAAQA TREARLAVADDVIDNNGAPDAIASDVARLHAHYLQLASQFVSQEKP" misc_feature complement(111191..111715) /gene="coaE" /locus_tag="SF0100" /note="Dephospho-CoA kinase; Region: CoaE; pfam01121" /db_xref="CDD:426062" misc_feature complement(order(111245..111247,111380..111385, 111455..111457,111623..111625,111698..111700)) /gene="coaE" /locus_tag="SF0100" /note="CoA-binding site [chemical binding]; other site" /db_xref="CDD:238980" misc_feature complement(order(111197..111199,111302..111304, 111677..111682,111689..111697)) /gene="coaE" /locus_tag="SF0100" /note="ATP-binding [chemical binding]; other site" /db_xref="CDD:238980" gene 111946..112989 /gene="guaC" /locus_tag="SF0101" /db_xref="GeneID:1024535" CDS 111946..112989 /gene="guaC" /locus_tag="SF0101" /note="Code: F; COG: COG0516" /codon_start=1 /transl_table=11 /product="guanosine 5'-monophosphate oxidoreductase" /protein_id="NP_706059.1" /db_xref="GeneID:1024535" /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQSW SGVPIIAANMDTVGTFSMASALASFDILTAVHKHFSVEEWQAFINNSSADVLKHVMVS TGTSDADFEKTKQILDLNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS DGGCTTPGDVAKAFGGGADFVMLGGMLAGHEESGGRIVEENGEKFMLFYGMSSESAMK RHVGGVAEYRAAEGKTVKLPLRGQVENTARDILGGLRSACTYVGASRLKELTKRTTFI RVLEQENRIFNNL" misc_feature 111946..112983 /gene="guaC" /locus_tag="SF0101" /note="guanosine 5'-monophosphate oxidoreductase; Provisional; Region: PRK05096" /db_xref="CDD:235343" gene complement(113024..114226) /gene="hofC" /locus_tag="SF0103" /db_xref="GeneID:1024516" CDS complement(113024..114226) /gene="hofC" /locus_tag="SF0103" /note="Code: N; COG: COG1459" /codon_start=1 /transl_table=11 /product="type IV pilin biogenesis protein" /protein_id="NP_706061.1" /db_xref="GeneID:1024516" /translation="MASKQLWRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLS LKRIAINSAQWRGDKSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAH DLEQGIAFSNALLPWSEAFPPLYQAMIRTGELTGKLDECCFELARQQKSQRQLTDKVK SALRYPIIILAMAIMVVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGW LLVLFGFLLAIANKLLMRRPTWLIARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSA GITFLQGVESVRETMRCPYWVQLLTQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTG EASGSLDLMLDNLAHHHRDNTMALADNLAALLEPALLIITGGIIGTLVVAMYLPIFHL GDAMSGMG" misc_feature complement(113036..114226) /gene="hofC" /locus_tag="SF0103" /note="protein transport protein HofC; Region: PRK10573" /db_xref="CDD:182559" gene complement(114216..115363) /gene="hofB" /locus_tag="SF0104" /pseudo /db_xref="GeneID:1024498" misc_feature complement(114216..115363) /gene="hofB" /locus_tag="SF0104" /note="'Similar to Escherichia coli K12 integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake gi: 1786296 (462 aa). BLAST with identity of 97% in 382 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.'" /pseudo gene complement(115373..115813) /gene="ppdD" /locus_tag="SF0105" /db_xref="GeneID:1024512" CDS complement(115373..115813) /gene="ppdD" /locus_tag="SF0105" /note="Code: N; COG: COG2165" /codon_start=1 /transl_table=11 /product="major pilin subunit" /protein_id="NP_706062.1" /db_xref="GeneID:1024512" /translation="MDKQRGFTLIELMVVIGIIAILSSIGIPAYQNYLRKAALTDMLQ TFVPYRTAVELCALEHGGLDTCDGGSNGIPSPTTTRYVSAMSVAKGVVSLTGQESLNG LSVVMTPGWDNANGVTGWARNCNIQSDSALQQACEDVFRFDDAN" misc_feature complement(115376..115813) /gene="ppdD" /locus_tag="SF0105" /note="putative major pilin subunit; Provisional; Region: PRK10574" /db_xref="CDD:236718" gene complement(116016..116909) /gene="nadC" /locus_tag="SF0106" /db_xref="GeneID:1024524" CDS complement(116016..116909) /gene="nadC" /locus_tag="SF0106" /note="Code: H; COG: COG0157" /codon_start=1 /transl_table=11 /product="quinolinate phosphoribosyltransferase" /protein_id="NP_706063.2" /db_xref="GeneID:1024524" /translation="MPPRRYNPDTRRDELLERINLDIPGAVAQALREDLGGTVDANND ITAKLLPENSRSHATVITRENGVFCGKRWVEEVFIQLAGDDVTIIWHVDDGDVINANQ PLFELEGPSRVLLTGERTALNFVQTLSGVASKVRHYVELLEGTNTQLLDTRKTLPGLR SALKYAVLCGGGANHRLGLSDAFLIKENHIIASGSVRQAVEKASWLHPDAPVEVEVEN LEELDEALKAGADIIMLDNFETEQMREAVKRTNGKALLEVSGNVTDKTLREFAETGVD FISVGALTKHVQALDLSMRFR" misc_feature complement(116019..116834) /gene="nadC" /locus_tag="SF0106" /note="Nicotinate-nucleotide pyrophosphorylase [Coenzyme transport and metabolism]; Region: NadC; COG0157" /db_xref="CDD:439927" gene 116997..117548 /gene="ampD" /locus_tag="SF0107" /db_xref="GeneID:1024479" CDS 116997..117548 /gene="ampD" /locus_tag="SF0107" /note="Code: M; COG: COG3023" /codon_start=1 /transl_table=11 /product="N-acetyl-anhydromuranmyl-L-alanine amidase" /protein_id="NP_706064.1" /db_xref="GeneID:1024479" /translation="MLLEQGWLVGARRVPSPHYDCRLDDETPTLLVVHNISLPPGEFG GPWIDALFTGTIDPQAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSQY QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRALIDRYPDIANNMTGHCDIAPD RKTDPGPAFDWARFRALVSKETT" misc_feature 116997..117545 /gene="ampD" /locus_tag="SF0107" /note="1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD; Region: PRK11789" /db_xref="CDD:236984" misc_feature order(117096..117098,117216..117218,117456..117458, 117480..117482,117486..117488) /gene="ampD" /locus_tag="SF0107" /note="amidase catalytic site [active]" /db_xref="CDD:133475" misc_feature order(117096..117098,117456..117458,117486..117488) /gene="ampD" /locus_tag="SF0107" /note="Zn binding residues [ion binding]; other site" /db_xref="CDD:133475" misc_feature order(117099..117104,117174..117176,117216..117218, 117258..117260,117279..117284,117321..117323, 117456..117458,117468..117470,117480..117488) /gene="ampD" /locus_tag="SF0107" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133475" gene 117545..118399 /gene="ampE" /locus_tag="SF0108" /db_xref="GeneID:1027516" CDS 117545..118399 /gene="ampE" /locus_tag="SF0108" /codon_start=1 /transl_table=11 /product="regulatory protein AmpE" /protein_id="NP_706065.2" /db_xref="GeneID:1027516" /translation="MTLFTTLLVLIFERLFKLGEHWQLDHRLEAFFRRVKHFSLGRTL GMTIIAMGVTFLLLRALQGVLFNVPTLLVWLLIGLLCIGAGKVRLHYHAYLTAASRND SHARATMAGELTMIHGVPAGCDEREYLRELQNALLWINFRFYLAPLFWLIVGGTWGPV TLMGYAFLRAWQYWLARYQTPHHRLQSGIDAVLHVLDWVPVRLAGVVYALIGHGEKAL PAWFASLGDFHTSQYQVLTRLAQFSLAREPHVDKVETPKAAVSMAKKTSFVVVVVIAL LTIYGALV" misc_feature 117545..118396 /gene="ampE" /locus_tag="SF0108" /note="Regulatory signalling modulator protein AmpE; Region: AmpE; pfam17113" /db_xref="CDD:374997" gene complement(118442..119815) /gene="aroP" /locus_tag="SF0109" /db_xref="GeneID:1024518" CDS complement(118442..119815) /gene="aroP" /locus_tag="SF0109" /note="Code: E; COG: COG1113" /codon_start=1 /transl_table=11 /product="aromatic amino acid transporter" /protein_id="NP_706066.1" /db_xref="GeneID:1024518" /translation="MMEGQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGSFAGFASGWNYWVL YVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAIIK VIAVVAMIIFGGWLLFSGNGGPQASVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLE LVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIF HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALASVDKRGVPV NTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQEQG VVTRFPALLYPLGNWICLLFMAAVLVIMLMTPGMAISVYLIPVWLIVLGIGYLFKEKT AKAVKAH" misc_feature complement(118445..119812) /gene="aroP" /locus_tag="SF0109" /note="aromatic amino acid transporter AroP; Region: PRK10238" /db_xref="CDD:182324" gene 120356..121120 /gene="pdhR" /locus_tag="SF0110" /db_xref="GeneID:1024475" CDS 120356..121120 /gene="pdhR" /locus_tag="SF0110" /note="Code: K; COG: COG2186" /codon_start=1 /transl_table=11 /product="transcriptional regulator PdhR" /protein_id="NP_706067.2" /db_xref="GeneID:1024475" /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQYDLLE TRHALEGIAAYYAALRSTDEDKERIRELHHAIELAQQSGDLDAESNAVLQYQIAVTEA AHNVVLLHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMVGKPEEAR EASHRHLAFIEEILLDRSREESRRERSLRRLEQRKN" misc_feature 120356..121057 /gene="pdhR" /locus_tag="SF0110" /note="pyruvate dehydrogenase complex transcriptional repressor PdhR; Region: pdhR; PRK09464" /db_xref="CDD:181879" gene 121281..123944 /gene="aceE" /locus_tag="SF0111" /db_xref="GeneID:1024528" CDS 121281..123944 /gene="aceE" /locus_tag="SF0111" /note="Code: C; COG: COG2609" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase subunit E1" /protein_id="NP_706068.1" /db_xref="GeneID:1024528" /translation="MSERFPNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLAEA RKGGVNVAAGTGISNYINTIPVEEQPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGVYARAFLEGRLTQ EQLDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKII NELEGIFEGAGWNVIKVMWGSRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKIYAAFKKAQETKGKATVILAHTI KGYGMGDAAEGKNIAHQVKKMNMDGVRHIRDRFNVPVSDADIEKLPYITFPEGSEEHT YLHAQRQKLHGYLPSRQPNFTEKLELPSLQDFGALLEEQSKELSTTIAFVRALNVMLK NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL QEGINELGAGCSWLAAATSYSTNNLPMIPFYIYYSMFGFQRIGDLCWAAGDQQARGFL IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK QENVYYYITTLNENYHMPAMPEGAEEGIRKGIYKLETIEGSKGKVQLLGSGSILRHVR EAAEILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE LAKRGEIDKKVVADAIAKFNIDADKVNPRLA" misc_feature 121281..123941 /gene="aceE" /locus_tag="SF0111" /note="pyruvate dehydrogenase subunit E1; Reviewed; Region: aceE; PRK09405" /db_xref="CDD:236500" gene 123959..125839 /gene="aceF" /locus_tag="SF0112" /db_xref="GeneID:1024520" CDS 123959..125839 /gene="aceF" /locus_tag="SF0112" /note="Code: C; COG: COG0508" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase dihydrolipoyltransacetylase" /protein_id="NP_706069.1" /db_xref="GeneID:1024520" /translation="MAIEIKVPDIGADEVEITEILVKVGDKVEAEQSLITVEGDKASM EVPSPQAGIVKEIKVSVGDKTQTGALIMIFDSADGAADAAPAQAEEKKEAAPAAAPAA AAAKDVNVPDIGSDEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEI KVNVGDKVSTGSLIMVFEVAGEAGAAAPAAKQEATPAATPAPAAGVKEVNVPDIGGDE VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGDKVKTGSLIM IFEVEGAAPAAAPAKQEAAAPAPAAKAEAPAAKAEGKSEFAENDSYVHATPLIRRLAR EFGVNLAKVKGTGRKGRILREDVQAYVKEAIKRAEAAPAATGGGIPGMLPWPKVDFSK FGEIEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITELEAFRKQQNEEAAKRKLD VKITPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVVPVFK DVNKKGIIELSRELMTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNAPEV AILGVSKSAMEPVWNGKEFVPRLMLPISLSFDHRVIDGADGARFITIINNTLSDIRRL VM" misc_feature 123959..125836 /gene="aceF" /locus_tag="SF0112" /note="pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated; Region: aceF; PRK11854" /db_xref="CDD:236999" gene 126164..127588 /gene="lpdA" /locus_tag="SF0113" /db_xref="GeneID:1024526" CDS 126164..127588 /gene="lpdA" /locus_tag="SF0113" /note="Code: C; COG: COG1249" /codon_start=1 /transl_table=11 /product="dihydrolipoamide dehydrogenase" /protein_id="NP_706070.2" /db_xref="GeneID:1024526" /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVINQLTGGLA GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP RIWDSTDALELKEVPERLLVMGGGIIGLEMGTVYHALGSQIDVVEMFDQVIPAADKDI VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPN GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE SVGLAAEVFEGSITDLPNPKAKKK" misc_feature 126173..127546 /gene="lpdA" /locus_tag="SF0113" /note="Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Region: Lpd; COG1249" /db_xref="CDD:440861" gene complement(127659..129512) /gene="yacH" /locus_tag="SF0114" /pseudo /db_xref="GeneID:1024494" misc_feature complement(127659..129512) /gene="yacH" /locus_tag="SF0114" /note="Similar to Escherichia coli K12 membrane protein gi: 1786308 (618 aa). BLAST with identity of 97% in 617 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 129867..132464 /gene="acnB" /locus_tag="SF0115" /db_xref="GeneID:1024477" CDS 129867..132464 /gene="acnB" /locus_tag="SF0115" /note="Code: C; COG: COG1049" /codon_start=1 /transl_table=11 /product="aconitate hydratase B" /protein_id="NP_706071.2" /db_xref="GeneID:1024477" /translation="MLEEYRKHVAERAAEGIAPKPLDANQMAALVELLKNPPAGEEEF LLDLLTNRVPPGVDEAAYVKAGFLAAIAKGEAKSPLLTPEKAIELLGTMQGGYNIHPL IDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLNRP ALAEKLTVTVFKVTGETNTDDLSPAPDAWSRPDIPLHALAMLKNAREGIEPDQPGVVG PIKQIEALQQKGFPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPHVPNKRGGGLCLGG KIAPIFFNTMEDAGALPIEVNVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESDRGFSLAQKMVGRA CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK PVDVNTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIIEYLSSNI VLLKWMIAEGYGDRRTLERRIQGMEKWLANPELLEADADAEYAAVIDIDLAEIKEPIM CAPNDPDDARPLSAVQGEKIDEVFIGSCMTNIGHFRAAGKLLDAHKGQLPTRLWVAPP TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFNQLSQYTEKA DGVIFQTAV" misc_feature 129867..132458 /gene="acnB" /locus_tag="SF0115" /note="Aconitase B [Energy production and conversion]; Region: AcnB; COG1049" /db_xref="CDD:440670" gene 132591..133001 /gene="yacL" /locus_tag="SF0116" /db_xref="GeneID:1024484" CDS 132591..133001 /gene="yacL" /locus_tag="SF0116" /note="Code: S; COG: COG3112" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706072.3" /db_xref="GeneID:1024484" /translation="MARCDFGALPGAEEHTMDYEFLRDITGVVKVRMSMGHEVVGHWF NEEVKENLALLDEVEQAAHALKGSERSWQRAGHEYTLWMDAEEVMVRANQLEFAGDEM EEGMNYYDEESLSLCGVEDFLQVVAAYRNFVQQK" misc_feature 132639..132998 /gene="yacL" /locus_tag="SF0116" /note="hypothetical protein; Provisional; Region: PRK05248" /db_xref="CDD:235372" gene complement(133039..133833) /gene="speD" /locus_tag="SF0117" /db_xref="GeneID:1025958" CDS complement(133039..133833) /gene="speD" /locus_tag="SF0117" /note="Code: E; COG: COG1586" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine decarboxylase" /protein_id="NP_706073.1" /db_xref="GeneID:1025958" /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPVDPKLIDKTEHPGPLP ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI VTIDYRVRGFTRDINGMKHFIDHEINSIQNFMSDDMKALYDMVDVNVYQENIFHTKML LKEFDLKHYMFHTKPEDLTDSERQEITAALWKEMREIYYGRNMPAV" misc_feature complement(133042..133833) /gene="speD" /locus_tag="SF0117" /note="adenosylmethionine decarboxylase; Region: PRK05462" /db_xref="CDD:235480" gene complement(133849..134715) /gene="speE" /locus_tag="SF0118" /db_xref="GeneID:1024480" CDS complement(133849..134715) /gene="speE" /locus_tag="SF0118" /note="Code: E; COG: COG0421" /codon_start=1 /transl_table=11 /product="spermidine synthase" /protein_id="NP_706074.1" /db_xref="GeneID:1024480" /translation="MAEKKQWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE SITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFQLVIDDGVNFVNQTSQTFDVIISDCT DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQEEAIDSHRKLSHYFSDVGF YQAAIPTYYGGIMTFAWATDNDALRHLSTEIIQARFLASGLKCRYYNPAIHTAAFALP QYLQDALASQPS" misc_feature complement(133864..134697) /gene="speE" /locus_tag="SF0118" /note="polyamine aminopropyltransferase; Region: PRK00811" /db_xref="CDD:234843" misc_feature complement(order(134242..134244,134293..134301, 134389..134394,134446..134466)) /gene="speE" /locus_tag="SF0118" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(134821..135339) /gene="yacC" /locus_tag="SF0120" /db_xref="GeneID:1024486" CDS complement(134821..135339) /gene="yacC" /locus_tag="SF0120" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706075.1" /db_xref="GeneID:1024486" /translation="MHSYFLILKQAKQNQTLSIVLPLTGRSSRRHNLIDNNGRRLARS VLTFIFFKPLVEAMKTFFRTVLFGSLIAVCANSYALSESEAEDMADLTAVFVFLKNDC GYQNLSNGQIRRALVFFAQQNQWDLSNYDTFDMKALGEDSYRDLSGIGIPVAKKCKAL ARDSLSLLAYVK" misc_feature complement(134824..135168) /gene="yacC" /locus_tag="SF0120" /note="YacC family pilotin-like protein; Region: pilot_rel_YacC; NF037975" /db_xref="CDD:411579" gene 135334..136884 /gene="yacK" /locus_tag="SF0119" /db_xref="GeneID:1024490" CDS 135334..136884 /gene="yacK" /locus_tag="SF0119" /note="Code: Q; COG: COG2132" /codon_start=1 /transl_table=11 /product="multicopper oxidase" /protein_id="NP_706076.2" /db_xref="GeneID:1024490" /translation="MQRRDFLKYSVALGVASALPLWSRAVFAAERPTLPIPDLLTTDA RNRIQLTIGAGQSTFGEKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLAEETTLHW HGLEVPGDVDGGPQGIIPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLV VIEDDEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNG AIYPQHAAPRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGLLPEPVKVSELTVL MGERFEVLEEVNDNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTL SSLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGN MNHMNHGGKFDFHHANKINGQAFDMNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGT QFRILSENGKPPAAHRAGWKDTVKVEGNVSEVLVKFNHNAPKEHAYMAHCHLLEHEDT GMMLGFTV" misc_feature 135334..136881 /gene="yacK" /locus_tag="SF0119" /note="multicopper oxidase; Provisional; Region: PRK10965" /db_xref="CDD:236810" gene complement(136931..139261) /gene="gcd" /locus_tag="SF0121" /pseudogene="unknown" /db_xref="GeneID:1024501" gene 139510..140058 /gene="hpt" /locus_tag="SF0122" /db_xref="GeneID:1024487" CDS 139510..140058 /gene="hpt" /locus_tag="SF0122" /note="Code: F; COG: COG0634" /codon_start=1 /transl_table=11 /product="hypoxanthine phosphoribosyltransferase" /protein_id="NP_706078.4" /db_xref="GeneID:1024487" /translation="MVRDMKHTVEVMIPEAEIKARIAELGRQITERYKDSGSDMVLVG LLRGSFMFMADLCREVQVSHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIV EDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGY GIDYAQRYRHLPYIGKVILLDE" misc_feature 139522..140055 /gene="hpt" /locus_tag="SF0122" /note="hypoxanthine phosphoribosyltransferase; Provisional; Region: PRK15423" /db_xref="CDD:185321" misc_feature order(139645..139647,139651..139653,139816..139824, 139828..139842,139912..139914) /gene="hpt" /locus_tag="SF0122" /note="active site" /db_xref="CDD:206754" gene complement(140099..140761) /gene="yadF" /locus_tag="SF0123" /db_xref="GeneID:1024493" CDS complement(140099..140761) /gene="yadF" /locus_tag="SF0123" /note="Code: P; COG: COG0288" /codon_start=1 /transl_table=11 /product="carbonic anhydrase" /protein_id="NP_706079.1" /db_xref="GeneID:1024493" /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSD SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHYGCG GVQAAVENPELGLINNWLLHIRDIWFKHSSLLGEMPQERRLDTLCELNVMEQVYNLGH STIMQSAWKRGQKVTIHGWAYGIHDGLLRDLDVTATNRETLEQRYRHGISNLKLKHAN HK" misc_feature complement(140102..140761) /gene="yadF" /locus_tag="SF0123" /note="carbonic anhydrase; Provisional; Region: PRK10437" /db_xref="CDD:182460" misc_feature complement(order(140219..140221,140459..140461, 140468..140470,140498..140500,140513..140515, 140579..140581,140588..140590,140624..140632, 140636..140638,140657..140659,140663..140665)) /gene="yadF" /locus_tag="SF0123" /note="active site clefts [active]" /db_xref="CDD:238448" misc_feature complement(order(140459..140461,140468..140470, 140630..140632,140636..140638)) /gene="yadF" /locus_tag="SF0123" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:238448" misc_feature complement(order(140198..140200,140204..140206, 140210..140215,140219..140221,140405..140407, 140513..140518,140525..140530,140570..140572, 140576..140578,140582..140590,140603..140605, 140609..140614,140618..140620,140624..140635)) /gene="yadF" /locus_tag="SF0123" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238448" gene 140870..141796 /gene="yadG" /locus_tag="SF0124" /db_xref="GeneID:1024521" CDS 140870..141796 /gene="yadG" /locus_tag="SF0124" /note="Code: Q; COG: COG1131" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_706080.1" /db_xref="GeneID:1024521" /translation="MTIALELQQLKKNYPGGVQALRGIDLQVEAGDFYALLGPNGAGK STTIGIISSLVNKTSGRVSVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ AGYYGVERKEAYIRSEKYLKQLDLWGKRNERARMLSGGMKRRLMIARALMHEPKLLIL DEPTAGVDIELRRSMWGFLKDLNDKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT SMKALLAKLKSETFILDLAPKSPLPKLDGYQYRLVDTATLEVEVLREQGINSVFTQLS EQGIQVLSMRNKANRLEELFVSLVNEKQGDRA" misc_feature 140882..141568 /gene="yadG" /locus_tag="SF0124" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:440746" gene 141793..142563 /gene="yadH" /locus_tag="SF0125" /db_xref="GeneID:1024531" CDS 141793..142563 /gene="yadH" /locus_tag="SF0125" /note="Code: R; COG: COG0842" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_706081.1" /db_xref="GeneID:1024531" /translation="MMHLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN LIGSRIGDMHGFSYMQFIVPGLIMMSVITNAYANVASSFFGAKFQRNIEELLVAPVPT HVIIAGYVGGGVARGLFVGILVTAISLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLN GVFAKTFDDISLVPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF LGINDVPLVTTFGVLVVFIVAFYLICWSLIQRGRGLRS" misc_feature 141793..142560 /gene="yadH" /locus_tag="SF0125" /note="inner membrane transport permease; Provisional; Region: PRK15066" /db_xref="CDD:237896" gene 142668..143108 /gene="yadI" /locus_tag="SF0126" /db_xref="GeneID:1024515" CDS 142668..143108 /gene="yadI" /locus_tag="SF0126" /note="Code: G; COG: COG2893" /codon_start=1 /transl_table=11 /product="PTS system transporter subunit IIB" /protein_id="NP_706082.1" /db_xref="GeneID:1024515" /translation="MLGWVITCHDDRAQEILDALEKKHGALLQCRAVNFWRGLSSNML SRMMCDALHEADSGEGVIFLTDIAGAPPYRVASLLSHKHSRCEVISGVTLPLIEQMMA CRETMTSSEFRECIVELGGPEVSSLWHQQQKNPPFVLKHNLYEY" misc_feature 142677..143054 /gene="yadI" /locus_tag="SF0126" /note="Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]; Region: ManX; COG2893" /db_xref="CDD:442138" gene 143172..144401 /gene="yadE" /locus_tag="SF0127" /db_xref="GeneID:1024508" CDS 143172..144401 /gene="yadE" /locus_tag="SF0127" /note="Code: G; COG: COG0726" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706083.2" /db_xref="GeneID:1024508" /translation="MYKQAVILLLMLFTASVSAALPARYMQTIENAAVWAQISDKMVT VGNIRAGQIIAVEPTAASYYAFNFGFGKGFIDKGHLEPVQGRQKVEDGLGDLNKPLSN QNLITWKDTPVYNAPSVGSAPFGVLADNLRYPILHKLKDRLNQTWYQIRIGDRLAYIS ALDAQPDNGLPVLTYHHILRDEENTRFRHTSTTTSVRAFNNQMAWLRDRGYATLSMAQ LEGYVKNTINLPARAVVITFDDGLKSVSRYAYPVLKQYGMKATVFIVTSRIKRHPQKW NPKSLQFMSVSELNEIRDVFDFQSHTHFLHRVDGYRRPILLSRSEHNILFDFARSRRA LAQFNPHVWYLSYPFGGFNDKAVKAANDAGFHLAVTTMKGKVKPGDNPLLLKRLYILR TDSLEKMSRLVSNQPQG" misc_feature 143859..144368 /gene="yadE" /locus_tag="SF0127" /note="Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins; Region: CE4_yadE_5s; cd10966" /db_xref="CDD:213024" misc_feature order(143886..143891,144072..144074,144087..144089, 144213..144221) /gene="yadE" /locus_tag="SF0127" /note="putative active site [active]" /db_xref="CDD:213024" gene complement(144405..144785) /gene="panD" /locus_tag="SF0128" /db_xref="GeneID:1024489" CDS complement(144405..144785) /gene="panD" /locus_tag="SF0128" /note="Code: H; COG: COG0853" /codon_start=1 /transl_table=11 /product="aspartate alpha-decarboxylase" /protein_id="NP_706084.2" /db_xref="GeneID:1024489" /translation="MIRTMLQGKLHRVKVTHADLHYEGSCAIDQDFLDAAGILENEAI DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCASVGDIVIIASFVTMPDEEARTWR PNVAYFEGDNEMKRTAKAIPVQVA" misc_feature complement(144408..144785) /gene="panD" /locus_tag="SF0128" /note="L-aspartate-alpha-decarboxylase; Region: panD; TIGR00223" /db_xref="CDD:129327" misc_feature complement(order(144483..144485,144510..144518, 144528..144530,144552..144557,144561..144566, 144612..144626,144630..144632,144639..144641, 144645..144647,144657..144662,144669..144671, 144675..144677,144717..144728,144750..144755, 144759..144761,144765..144779)) /gene="panD" /locus_tag="SF0128" /note="tetramerization interface [polypeptide binding]; other site" /db_xref="CDD:132994" misc_feature complement(order(144612..144614,144711..144716, 144753..144755,144759..144761)) /gene="panD" /locus_tag="SF0128" /note="active site" /db_xref="CDD:132994" gene 145059..145961 /gene="yadD" /locus_tag="SF0129" /db_xref="GeneID:1027520" CDS 145059..145961 /gene="yadD" /locus_tag="SF0129" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706085.1" /db_xref="GeneID:1027520" /translation="MDAPSTTPHDAVFKQFLMHAETARDFLEIHLPVELRELCDLNTL HLESGSFIEECLKGHSTDVLYSMQMQGNPGYLHVVIEHQSKPDKKMAFRMMRYSIAAM HRHLEAGHDKLPLVVPILFYQGEATPYPLSMCWFDMFYSPELARRVYNSPFPLVDITI TPDDEIMQHRRIAILELLQKHIRQRDLMLLLEQLVTLIDEGYTSGSQLVAMQNYMLQR GHTEQADLFYGVLRDRETGGKSMMTLAQWFEEKGIEKGIQQGRQEERQEFALRLLSKG MSREDVAEMANLPLAEIDKVINLI" misc_feature 145077..145682 /gene="yadD" /locus_tag="SF0129" /note="Putative transposase, YhgA-like; Region: Transposase_31; pfam04754" /db_xref="CDD:428107" gene complement(146035..146886) /gene="panC" /locus_tag="SF0130" /db_xref="GeneID:1024504" CDS complement(146035..146886) /gene="panC" /locus_tag="SF0130" /note="Code: H; COG: COG0414" /codon_start=1 /transl_table=11 /product="pantoate--beta-alanine ligase" /protein_id="NP_706086.1" /db_xref="GeneID:1024504" /translation="MLIIETLPLLRQQIRRLRMEGKRVALVPTMGNLHNGHMKLVDEA KARADVVVVSIFVNPMQFDRPEDLARYPRTLQEDCEKLNKRKVDLVFAPSVKEIYPNG TETHTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLVQPDIACFGEKDFQQLALIR KMVADMGFDIEIVGVPIMRAKDGLALSSRNGYLTAEQRKIAPGLYKVLSSIADKLQAG ERDLDEIITIAGQELNEKGFRADDIQIRDADTLLEVSETSKRAVILVAAWLGDARLID NKMVELA" misc_feature complement(146044..146886) /gene="panC" /locus_tag="SF0130" /note="Panthothenate synthetase [Coenzyme transport and metabolism]; Region: PanC; COG0414" /db_xref="CDD:440183" gene complement(146898..147692) /gene="panB" /locus_tag="SF0131" /db_xref="GeneID:1024497" CDS complement(146898..147692) /gene="panB" /locus_tag="SF0131" /note="Code: H; COG: COG0413" /codon_start=1 /transl_table=11 /product="3-methyl-2-oxobutanoate hydroxymethyltransferase" /protein_id="NP_706087.1" /db_xref="GeneID:1024497" /translation="MKPTTIASLQKYKQDKKRFATITAYDYSFAKLFADEGLNVMLVG DSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAAT VMRAGANMVKIEGGEWLVETVKMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGNEAS DRLLSDALALEAAGAQLLVLECVPVELAKRITEALAIPVIGIGAGNVTDGQILVMHDA FGITGGHIPKFAKNFLAETGDIRAAVRQYMAEVESGVYPGEEHSFH" misc_feature complement(146907..147683) /gene="panB" /locus_tag="SF0131" /note="Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]; Region: PanB; COG0413" /db_xref="CDD:440182" mobile_element 148131..148898 /mobile_element_type="insertion sequence:IS1" gene 148380..148883 /gene="insB" /locus_tag="SF0133" /db_xref="GeneID:1024492" CDS 148380..148883 /gene="insB" /locus_tag="SF0133" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706089.1" /db_xref="GeneID:1024492" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 148488..148880 /gene="insB" /locus_tag="SF0133" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(149031..149510) /gene="folK" /locus_tag="SF0134" /db_xref="GeneID:1024464" CDS complement(149031..149510) /gene="folK" /locus_tag="SF0134" /note="Code: H; COG: COG0801" /codon_start=1 /transl_table=11 /product="2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase" /protein_id="NP_706090.1" /db_xref="GeneID:1024464" /translation="MTVAYIAIGSNLASPLEQVNAALKALGDIPESRILAVSSFYRTP PLGPQDQPDYLNAAVALETSPAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLF GNEVINTERLTVPHYDMKNRGFMLWPLFEIAPELAFPDGETLREVLHTRAFDKLSKW" misc_feature complement(149034..149510) /gene="folK" /locus_tag="SF0134" /note="2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; Region: PRK10239" /db_xref="CDD:182325" misc_feature complement(order(149139..149141,149145..149147, 149160..149165,149172..149174,149214..149219, 149223..149225,149232..149234,149241..149243, 149256..149258,149262..149264,149277..149279, 149286..149288,149298..149300,149343..149345, 149349..149351,149373..149375,149379..149384, 149484..149486)) /gene="folK" /locus_tag="SF0134" /note="catalytic center binding site [active]" /db_xref="CDD:238269" misc_feature complement(order(149145..149147,149160..149165, 149172..149174,149214..149219,149232..149234, 149256..149258,149262..149264,149277..149279, 149286..149288,149298..149300)) /gene="folK" /locus_tag="SF0134" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238269" gene complement(149507..150871) /gene="pcnB" /locus_tag="SF0135" /db_xref="GeneID:1024495" CDS complement(149507..150871) /gene="pcnB" /locus_tag="SF0135" /note="Code: J; COG: COG0617" /codon_start=1 /transl_table=11 /product="poly(A) polymerase" /protein_id="NP_706091.4" /db_xref="GeneID:1024495" /translation="MLSREESEAEQAVARPQVTVIPREQHAISRKDISENALKVMYRL NKAGYEAWLVGGGVRDLLLGKKPKDFDVTTNATPEQVRKLFRNCRLVGRRFRLAHVMF GPEIIEVATFRGHHEGNVSDRTTSQRGQNGMLLRDNIFGSIEEDAQRRDFTINSLYYS VADFTVRDYVGGMKDLKDGVIRLIGNPETRYREDPVRMLRAVRFAAKLGMRISPETAE PIPRLATLLNDIPPARLFEESLKLLQAGYGYETYKLLCEYHLFQPLFPTITRYFTENG DSPMERIIEQVLKNTDTRIHNDMRVNPAFLFAAMFWYPLLETAQKIAQESGLTYHDAF ALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQGKRAWKLLEHPKFRAAYDL LALRAEVERNAELQRLVKWWGEFQVSAPPDQKGMLNELDEEPSPRRRTRRPRKRAPRR EGTT" misc_feature complement(149573..150871) /gene="pcnB" /locus_tag="SF0135" /note="poly(A) polymerase I; Provisional; Region: pcnB; PRK11623" /db_xref="CDD:236939" gene complement(150964..151890) /gene="yadB" /locus_tag="SF0136" /db_xref="GeneID:1024452" CDS complement(150964..151890) /gene="yadB" /locus_tag="SF0136" /note="Code: J; COG: COG0008" /codon_start=1 /transl_table=11 /product="tRNA synthetase" /protein_id="NP_706092.3" /db_xref="GeneID:1024452" /translation="MLPPYFLFKEMTDTQYIGRFAPSPSGELHFGSLIAALGSYLQAR ARQGRWLVRIEDIDPPREVPGAAETILRQLEHYGLHWDGDVLWQSQRHDAYREALAWL HEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDLLRGII HADEKLAREDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQIPLYQLF GWKVPDYIHLPLALNPQGAKLSKQNHAPALPKGDPRPVLIAALQFLGQQAEAHWQDFS VEQILQSAVKNWMLTAVPESAIVNSTFSNASC" misc_feature complement(150982..151860) /gene="yadB" /locus_tag="SF0136" /note="tRNA glutamyl-Q(34) synthetase GluQRS; Region: PRK05710" /db_xref="CDD:235573" misc_feature complement(order(151168..151170,151795..151797, 151804..151806)) /gene="yadB" /locus_tag="SF0136" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173912" misc_feature complement(151795..151806) /gene="yadB" /locus_tag="SF0136" /note="HIGH motif; other site" /db_xref="CDD:173912" gene complement(151927..152382) /gene="dksA" /locus_tag="SF0137" /db_xref="GeneID:1024482" CDS complement(151927..152382) /gene="dksA" /locus_tag="SF0137" /note="Code: T; COG: COG1734" /codon_start=1 /transl_table=11 /product="RNA polymerase-binding transcription factor" /protein_id="NP_706093.2" /db_xref="GeneID:1024482" /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRIL EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG" misc_feature complement(151930..152382) /gene="dksA" /locus_tag="SF0137" /note="RNA polymerase-binding protein DksA; Region: dksA; PRK10778" /db_xref="CDD:182722" gene complement(152560..153264) /gene="sfsA" /locus_tag="SF0138" /db_xref="GeneID:1024496" CDS complement(152560..153264) /gene="sfsA" /locus_tag="SF0138" /note="Code: G; COG: COG1489" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator" /protein_id="NP_706094.1" /db_xref="GeneID:1024496" /translation="MEFSPPLQRATLIQRYKRFLADVITPDGRELTLHCPNTGAMTGC ATPGDTVWYSTSDNTKRKYPHTWELTQSQSGAFICVNTLWANRLTKEAILNESISELS GYSSLKSEVKYGSERSRIDFMLQADSRPDCYIEVKSVTLAENEQGYFPDAVTERGQKH LRELMSVAAEGQRAVIFFAVLHSAITRFSPARHIDEKYAQLLSEAQQRGVEILAYKAE ISAEGMALKKSLPVTL" misc_feature complement(152563..153264) /gene="sfsA" /locus_tag="SF0138" /note="DNA-binding protein, stimulates sugar fermentation [Carbohydrate transport and metabolism, Signal transduction mechanisms]; Region: SfsA; COG1489" /db_xref="CDD:441098" gene complement(153279..153818) /gene="yadP" /locus_tag="SF0139" /db_xref="GeneID:1024485" CDS complement(153279..153818) /gene="yadP" /locus_tag="SF0139" /note="Code: J; COG: COG1514" /codon_start=1 /transl_table=11 /product="2'-5' RNA ligase" /protein_id="NP_706095.1" /db_xref="GeneID:1024485" /translation="MPHMSEPQRLFFAIDLPAEIREQIIHWRATHFPPEAGRPVAADN LHLTLAFLGEVSAEKEKALSLLAGRIRQPGFTLTLDDAGQWLRSRVVWLGMRQPPRGL IQLANMLRSQAARSGCFQSNRPFHPHITLLRDASEAVTFPPPGFNWSYAVTEFTLYAS SFARGRTRYTPLKRWALTQ" misc_feature complement(153282..153809) /gene="yadP" /locus_tag="SF0139" /note="RNA 2',3'-cyclic phosphodiesterase; Region: PRK15124" /db_xref="CDD:185079" gene 153838..156312 /gene="hrpB" /locus_tag="SF0140" /db_xref="GeneID:1024462" CDS 153838..156312 /gene="hrpB" /locus_tag="SF0140" /note="Code: L; COG: COG1643" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase HrpB" /protein_id="NP_706096.1" /db_xref="GeneID:1024462" /translation="MLQCGAKNVNPLERFVSSLPVAAVLPELLTALDCAPQVLLSAPT GAGKSTWLPLQLLAHPGINGKIILLEPRRLAARNVAQRLAELLNEKPGDTVGYRMRAQ NCVGLNTRLEVVTEGVLTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQG LRDDLKLLIMSATLDNDRLQQMLPEAPVVISEGRSFPVERRYLPLPAHQRFDEAVAVA TAEMVRQESGSLLLFLPGVGEIQRVQEQLASRIGSDVVLCPLYGVLSLNDQRKAILPA PQGMRKVVLATNIAETSLTIEGIRLVVDCAQERVARFDPRTGLTRLITQRVSQASMTQ RAGRAGRLEPGISLHLIAKEQAERAAAQSEPEILQSDLSGLLMELLQWGCSDPAQMSW LDQPPTVNLLAAKRLLQMLGALEGERLSAQGQKMAALGNDPRLAAMLVNAKSDDEAAT AAKIAAILEEPPRMGNSDLGVAFSRNQPAWQQRSQQLLKRLNVRGGEADSSLIAPLLA GAFADRIAHRRGQDGRYQLANSMGAMLDADDALSRHEWLIAPLLLQGSASPDARILLA LPVDIDELVQRCPQLVQQSDTVEWDDAQGTLKAWRRLQIGQLTVKVQPLAKPSEDELH QAMLNGIRDKGLSVLNWTAEAEQLRLRLLCAAKWLPEYDWPAVDDESLLATLETWLLP HMTGVHSLRGLKSLDIYQALRGLLDWGMQQRLDSELPAHYTVPTGSRIAIRYHEDNPP ALAVRMQEMFGEATNPTIAQGRVPLVLKLLSPAQRPLQITRDLGAFWKGAYREVQKEM KGRYPKHVWPDDPANTAPTRRTKKYS" misc_feature 153883..156309 /gene="hrpB" /locus_tag="SF0140" /note="ATP-dependent RNA helicase HrpB; Provisional; Region: PRK11664" /db_xref="CDD:236950" gene 156508..159042 /gene="mrcB" /locus_tag="SF0141" /db_xref="GeneID:1024458" CDS 156508..159042 /gene="mrcB" /locus_tag="SF0141" /note="Code: M; COG: COG0744" /codon_start=1 /transl_table=11 /product="bifunctional glycosyl transferase/transpeptidase" /protein_id="NP_706097.2" /db_xref="GeneID:1024458" /translation="MAGNDREPIGRKGKPTRPVKQKVSRRRYEDDDDYDDYDDYEDEE PMPRKGKGKGKGRKPRGKRGWLWLLLKLAIVFAVLIAIYGVYLDQKIRSRIDGKVWQL PAAVYGRMVNLEPDMTISKNEMVKLLEATQYRQVSKMTRPGEFTVQANSIEMIRRPFD FPDSKEGQVRARLTFDGDHLATIVNMENNRQFGFFRLDPRLITMISSPNGEQRLFVPR SGFPDLLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNL FLSSERSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYY FGRPVEELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQQIIDQELYD MLSARPLGVQPRGGVISPQPAFMQLVRQELQAKLGDKVKDLSGVKIFTTFDSVAQDAA EKAAVEGIPALKKQRKLSDLETAIVVVDRFSGEVRAMVGGSEPQFAGYNRAMQARRSI GSLAKPATYLTALSQPKIYRLNTWIADAPIALRQPNGQVWSPQNDDRRYSESGRVMLV DALTRSMNVPTVNLGMALGLPAVTETWIKLGVPKDQLHPVPAMLLGALNLTPIEVAQA FQTIASGGNRAPLSALRSVIAEDGKVLYQSFPQAERAVPAQAAYLTLWTMQQVVQRGT GRQLGAKYPNLHLAGKTGTTNNNVDTWFAGIDGSTVTITWVGRDNNQPTKLYGASGAM SIYQRYLANQTPTPLNLVPPEDIADMGVDYDGNFVCSGGMRVLPVWTSDPQSLCQQSE MQQQPSGNPFDQSSQPQQQPQQQPAQQEQKDSDGVAGWIKDMFGSN" misc_feature 156508..159036 /gene="mrcB" /locus_tag="SF0141" /note="bifunctional glycosyl transferase/transpeptidase; Reviewed; Region: mrcB; PRK09506" /db_xref="CDD:236544" gene 159262..161505 /gene="fhuA" /locus_tag="SF0142" /db_xref="GeneID:1024465" CDS 159262..161505 /gene="fhuA" /locus_tag="SF0142" /note="Code: P; COG: COG1629" /codon_start=1 /transl_table=11 /product="ferrichrome outer membrane transporter" /protein_id="NP_706098.1" /db_xref="GeneID:1024465" /translation="MARSKTAQPKHSLRKIAVVVATAVSGMSVYAQAAVEPKEDTITV TAAPAPQESAWGPAATIAARQSATGTKTDTPIQKVPQSISVVTAEEMALHQPKSVKEA LSYTPGVSVGTRGASNTYDHLIIRGFAAEGQSQNNYLNGLKLQGNFYNDAVIDPYMLE RAEIMRGPVSVLYGKSSPGGLLNMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDALD DDGVYSYRLTGLARSANAQQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGY YGWLPKEGTVEPLPNGKRLPTDFNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLR FAENKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDT QLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLFNLYNPVNPDFDFNAKDP ANSGPYRILNKQKQTGVYVQDQAQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQ FTWRGGVNYLFDNGVTPYFSYSESFEPSSQVGKDGNIFAPSKGKQYEVGVKYVPEDRP IVVTGAVYNLTKTNNLMADPEGSFFSVEGGEIRARGVEIEAKAALSASVNVVGSYTYT DAEYTTDTTYKGNTPAQVPKHMASLWADYTFFDGPLSGLTLGTGGRYTGSSYGDPANS FKVGSYTVVDALVRYDLARVGMAGSNVALHVNNLFDREYVASCFNTYGCFWGAERQVV ATATFRF" misc_feature 159262..161502 /gene="fhuA" /locus_tag="SF0142" /note="ferrichrome outer membrane transporter; Provisional; Region: PRK10044" /db_xref="CDD:236643" gene 161556..162353 /gene="fhuC" /locus_tag="SF0143" /db_xref="GeneID:1027521" CDS 161556..162353 /gene="fhuC" /locus_tag="SF0143" /note="Code: PH; COG: COG1120" /codon_start=1 /transl_table=11 /product="iron-hydroxamate ABC transporter ATP-binding protein" /protein_id="NP_706099.2" /db_xref="GeneID:1027521" /translation="MQEYTNHSDTTFALRNISFRVPGRTLLHPLSLTFPAGKVTGLIG HNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPPAEGMTV RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAM LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYL VALRSGEMIAQGTPAEIMRGETLEMIYGIPMGILPHPAGAAPVSFVY" misc_feature 161556..162350 /gene="fhuC" /locus_tag="SF0143" /note="Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; Region: PRK10575" /db_xref="CDD:182561" gene 162353..163243 /gene="fhuD" /locus_tag="SF0144" /db_xref="GeneID:1024459" CDS 162353..163243 /gene="fhuD" /locus_tag="SF0144" /note="Code: P; COG: COG0614" /codon_start=1 /transl_table=11 /product="iron-hydroxamate ABC transporter substrate-binding protein" /protein_id="NP_706100.2" /db_xref="GeneID:1024459" /translation="MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWL PVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW SAGYGPSSEMLARIAPGRGFNFSDGKHPLAMARKSLTEMADLLNLQSAAETHLAQYED FIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWG STAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRTGRFQRVPAVWFYG ATLSAMHFVRVLDNAIGGKA" misc_feature 162362..163237 /gene="fhuD" /locus_tag="SF0144" /note="Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD; Region: PRK10576" /db_xref="CDD:236719" misc_feature order(162554..162556,162602..162607,162668..162670, 162917..162919) /gene="fhuD" /locus_tag="SF0144" /note="siderophore binding site [active]" /db_xref="CDD:238566" gene 163240..165222 /gene="fhuB" /locus_tag="SF0145" /db_xref="GeneID:1025959" CDS 163240..165222 /gene="fhuB" /locus_tag="SF0145" /note="Code: PH; COG: COG0609" /codon_start=1 /transl_table=11 /product="iron-hydroxamate ABC transporter permease" /protein_id="NP_706101.1" /db_xref="GeneID:1025959" /translation="MSKRIALFPALLLALLVIVATALTWMNFSQALPRSQWAQAAWSP DIDVIEQMIFHYSLLPRLAISLLVGAGLGLVGVLFQQVLRNPLAEPTTLGVATGAQLG ITVTTLWAIPSAMASQFAALAGACVVGLIVFGVAWGKRLSPVTLIFAGLVVSLYCGAI NQLLVIFHHDQLQSMFLWSTGTLTQTDWGGVERLWPQLLGGVMLTLLLLRPLTLMGLD DGVARNLGLALSLARLAALSLAIVISALLVNAVGIIGFIGLFAPLLAKMLGARRLLPR LMLASLIGALILWLSDQIILWLTRVWMEVSTGSVTALIGAPLLLWLLPRLRSISAPDM KVNDRVATERQHVLAFALAGGVLLLMAVVVALSFGRDAHGWTWASGALLEDLMPWRWP RIMAALFAGVMLAVAGCIIQRLTGNPMASPEVLGISSGAAFGVVLMLFLVPGNAFGWL LPAGSLGAAVTLLIIMIAAGRGGFSPHRMLLAGMALSTAFTMLLMMLQASGDPRMAQV LTWISGSTYNATDAQVWRTGIVMVILLAITPLCRRWLTILPLGGDTARAVGMALTPTR IALLLLAACLTATATMTIGPLSFVGLMAPHIARMMGFRRTMPHIVISALVGGLLLVFA DWCGRMVLFPFQIPAGLLSTFIGAPYFIYLLRKQSR" misc_feature 163240..165219 /gene="fhuB" /locus_tag="SF0145" /note="Fe(3+)-hydroxamate ABC transporter permease FhuB; Region: PRK10577" /db_xref="CDD:236720" misc_feature order(164473..164475,164485..164493,164854..164859, 164863..164871,164875..164880,164884..164901, 164905..164913,165034..165036,165055..165057) /gene="fhuB" /locus_tag="SF0145" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119348" misc_feature order(164488..164490,164494..164496,164509..164511, 164671..164673,164677..164682,164689..164694, 164701..164706,164713..164715,164722..164727, 164731..164733,164764..164769,164776..164778, 165004..165006,165160..165162,165169..165174, 165181..165183,165190..165195,165202..165204) /gene="fhuB" /locus_tag="SF0145" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(164731..164733,164806..164808,164980..164982, 164992..164994,165124..165126,165151..165153) /gene="fhuB" /locus_tag="SF0145" /note="putative PBP binding regions [active]" /db_xref="CDD:119348" gene complement(165257..166537) /gene="hemL" /locus_tag="SF0146" /db_xref="GeneID:1024471" CDS complement(165257..166537) /gene="hemL" /locus_tag="SF0146" /note="Code: H; COG: COG0001" /codon_start=1 /transl_table=11 /product="glutamate-1-semialdehyde aminotransferase" /protein_id="NP_706102.1" /db_xref="GeneID:1024471" /translation="MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYL YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTEL VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL GQPNSPGVPADFAKHTLTCTYNDLASVRAAFEQYPQEIACIIVEPVAGNMNCVPPLPE FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYFAVVPDLTCLGKIIGGGMPVGAF GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGIHETLDELTTRLAEG LLEAAEEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHMMLDEGVY LAPSAFEAGFMSVAHSMEDINNTIDAARRVFAKL" misc_feature complement(165260..166537) /gene="hemL" /locus_tag="SF0146" /note="glutamate-1-semialdehyde 2,1-aminomutase; Region: PRK00062" /db_xref="CDD:234607" misc_feature complement(order(165743..165745,165818..165823, 165827..165829,165926..165928,166103..166105, 166109..166114,166190..166198)) /gene="hemL" /locus_tag="SF0146" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature complement(order(165743..165745,165818..165820, 165827..165829,165926..165928,166109..166114, 166190..166195)) /gene="hemL" /locus_tag="SF0146" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature complement(165743..165745) /gene="hemL" /locus_tag="SF0146" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 166762..168183 /gene="yadQ" /locus_tag="SF0147" /db_xref="GeneID:1024457" CDS 166762..168183 /gene="yadQ" /locus_tag="SF0147" /note="Code: P; COG: COG0038" /codon_start=1 /transl_table=11 /product="chloride channel protein" /protein_id="NP_706103.1" /db_xref="GeneID:1024457" /translation="MKTDTPSLETPQAARLRRRQLIRQLLERDKTPLAILFMAAVVGT LVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAP EAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMGLGREGPTVQIGGNISR MVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAV FIGVIMSTIMYRIFNHEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGM QDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPATSGGGFNLIPIATAGNFSMGMLV FIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIA GMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILA RTLAKQEAEQLARSKAASASENT" misc_feature 166867..168180 /gene="yadQ" /locus_tag="SF0147" /note="H(+)/Cl(-) exchange transporter ClcA; Region: PRK05277" /db_xref="CDD:235385" misc_feature order(167077..167091,167197..167211,167824..167838, 168094..168096) /gene="yadQ" /locus_tag="SF0147" /note="Cl- selectivity filter [active]" /db_xref="CDD:238504" misc_feature order(167080..167082,167086..167088,167203..167208, 167824..167832,168094..168096) /gene="yadQ" /locus_tag="SF0147" /note="Cl- binding residues [ion binding]; other site" /db_xref="CDD:238504" misc_feature 167203..167205 /gene="yadQ" /locus_tag="SF0147" /note="pore gating glutamate residue [active]" /db_xref="CDD:238504" misc_feature order(167341..167343,167368..167370,167407..167409, 167428..167430,167968..167970,167977..167979, 168001..168003,168037..168039,168058..168063, 168070..168072) /gene="yadQ" /locus_tag="SF0147" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238504" misc_feature 167368..167370 /gene="yadQ" /locus_tag="SF0147" /note="H+/Cl- coupling transport residue [active]" /db_xref="CDD:238504" gene 168265..168609 /gene="yadR" /locus_tag="SF0148" /db_xref="GeneID:1024461" CDS 168265..168609 /gene="yadR" /locus_tag="SF0148" /note="Code: S; COG: COG0316" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster insertion protein ErpA" /protein_id="NP_706104.2" /db_xref="GeneID:1024461" /translation="MSDDVALPLEFTDAAANKVKSLIADEDNPNLKLRVYITGGGCSG FQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYTEGLEGSRFIVTNPNA KSTCGCGSSFSI" misc_feature 168265..168606 /gene="yadR" /locus_tag="SF0148" /note="iron-sulfur cluster insertion protein ErpA; Provisional; Region: PRK13623" /db_xref="CDD:184186" gene complement(168656..169279) /gene="yadS" /locus_tag="SF0149" /db_xref="GeneID:1024467" CDS complement(168656..169279) /gene="yadS" /locus_tag="SF0149" /note="Code: S; COG: COG2860" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706105.1" /db_xref="GeneID:1024467" /translation="MLVYWLDIVGTAVFAIYGVLLAGKLRMDPFGVLVLGVVTAVGDG TIRDMALDHGPVFWVKDPTDLVVAMVTSMLTIVLVRQPRRLPKWMLPVLDAVGLAVFV GISVNKAFNAEAGPLIAVCMGVITGVGGGIIRDVLVREIPMILRTEIYATACIIGGIV HATAYYTFSVPLETASMMGMVVTLLIRLAAIRWHLKLPTFALDENGR" misc_feature complement(168659..169279) /gene="yadS" /locus_tag="SF0149" /note="hypothetical protein; Provisional; Region: PRK10578" /db_xref="CDD:182564" gene complement(169317..170117) /gene="yadT" /locus_tag="SF0150" /db_xref="GeneID:1024500" CDS complement(169317..170117) /gene="yadT" /locus_tag="SF0150" /note="Code: P; COG: COG0614" /codon_start=1 /transl_table=11 /product="vitamin B12-transporter protein BtuF" /protein_id="NP_706106.1" /db_xref="GeneID:1024500" /translation="MAKSLFRALVALSFLAPLWLNAAPRVITLSPANTELAFAAGITP VGVSSYSDYPPQAQKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQVDQLASLGI KVMWVDATSIEQIANALRQLAPWSPQPDKAEQAAQSLLDQYVQLKAQYADKPKKRVFL QFGINPPFTSGKESIQNQVLEVCGGENIFKDSRVPWPQVSREQVLARSPQAIVITGGP DQIPKIKQYWGEQLKIPVIPLTSDWFERASPRIILAAQQLCNALSQVD" misc_feature complement(169320..170099) /gene="yadT" /locus_tag="SF0150" /note="vitamin B12-transporter protein BtuF; Provisional; Region: PRK03379" /db_xref="CDD:179575" misc_feature complement(order(169530..169532,169614..169616, 169857..169859,169863..169865,169968..169970, 170022..170027)) /gene="yadT" /locus_tag="SF0150" /note="cobalamin binding residues [chemical binding]; other site" /db_xref="CDD:238564" misc_feature complement(order(169512..169514,169902..169904)) /gene="yadT" /locus_tag="SF0150" /note="putative BtuC binding residues [active]" /db_xref="CDD:238564" misc_feature complement(order(169755..169760,169767..169769, 169776..169781,169785..169787,169794..169796, 169806..169808,169824..169826,169833..169835, 169860..169862)) /gene="yadT" /locus_tag="SF0150" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238564" gene complement(170110..170808) /gene="pfs" /locus_tag="SF0151" /db_xref="GeneID:1024491" CDS complement(170110..170808) /gene="pfs" /locus_tag="SF0151" /note="Code: F; COG: COG0775" /codon_start=1 /transl_table=11 /product="5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase" /protein_id="NP_706107.1" /db_xref="GeneID:1024491" /translation="MKIGIIGAMEEEVTLLRDKIENRQTISLGGCEIYTGQLNGTEVA LLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLAPTLKVGDIVVSDEARYHDADV TAFGYEYGQLPGCPAGFKADDKLIAAAEACIAELNLNAVRGLIVSGDAFINGSVGLAK IRHNFPQAIAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS SLMVESLVQKLAHG" misc_feature complement(170119..170808) /gene="pfs" /locus_tag="SF0151" /note="5'-methylthioadenosine/adenosylhomocysteine nucleosidase; Region: PRK05584" /db_xref="CDD:180148" misc_feature complement(order(170173..170175,170212..170214, 170218..170223,170230..170232,170287..170298, 170356..170361,170575..170583,170656..170661, 170773..170775,170782..170787)) /gene="pfs" /locus_tag="SF0151" /note="active site" /db_xref="CDD:350159" misc_feature complement(order(170251..170262,170266..170271, 170278..170280,170290..170292,170356..170364, 170512..170514,170518..170520,170614..170622, 170626..170631,170638..170643,170647..170664, 170668..170670,170716..170718,170779..170781)) /gene="pfs" /locus_tag="SF0151" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:350159" gene 170892..172277 /locus_tag="SF0152" /pseudogene="unknown" /db_xref="GeneID:1024476" gene 172543..173967 /gene="htrA" /locus_tag="SF0153" /db_xref="GeneID:1024488" CDS 172543..173967 /gene="htrA" /locus_tag="SF0153" /note="Code: O; COG: COG0265" /codon_start=1 /transl_table=11 /product="serine endoprotease" /protein_id="NP_706109.1" /db_xref="GeneID:1024488" /translation="MKKNTLALSALALSLGLALSPLSATAAETSSATTAQQMPSLAPM LEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGN GGGQQQKFMALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRS DIALIQIQNPKKLTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNA ENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNL TSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKAGD VITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDGKQVNVNLELQQSSQNQVDSSS IFNGIEGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKNIAELRKV LDSKPSVLALNIQRGDSTIYLLMQ" misc_feature 172603..173964 /gene="htrA" /locus_tag="SF0153" /note="serine endoprotease DegP; Region: PRK10942" /db_xref="CDD:236802" gene 174104..175278 /gene="yaeG" /locus_tag="SF0154" /pseudo /db_xref="GeneID:1024447" misc_feature 174104..175278 /gene="yaeG" /locus_tag="SF0154" /note="'Similar to Escherichia coli O157:H7 regulator protein of D-galactarate, D-glucarate and D-glycerate metabolism ref: NP_308193.1 (385 aa). BLAST with identity of 99% in 392 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene complement(175367..175753) /gene="yaeH" /locus_tag="SF0155" /db_xref="GeneID:1025961" CDS complement(175367..175753) /gene="yaeH" /locus_tag="SF0155" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706110.1" /db_xref="GeneID:1025961" /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDKGEFFAK SVKFKYPRQRKTVVADGVGQGYKEVQEISPNLRYIIDELDQICQRDRSEVDLKRKILD DLRHLESVVTNKISEIEADLEKLTRK" misc_feature complement(175379..175753) /gene="yaeH" /locus_tag="SF0155" /note="DUF3461 family protein; Region: PRK13677" /db_xref="CDD:184234" gene complement(176067..176891) /gene="dapD" /locus_tag="SF0156" /db_xref="GeneID:1024466" CDS complement(176067..176891) /gene="dapD" /locus_tag="SF0156" /note="Code: E; COG: COG2171" /codon_start=1 /transl_table=11 /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase" /protein_id="NP_706111.1" /db_xref="GeneID:1024466" /translation="MQQLQNIIETAFERRAEITPANADTVTREAVNQVIALLDSGALR VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIEGAESRYFDKVPMKFADYDEARFQKEG FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYIGQSTRIYDRE TGEIHYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID" misc_feature complement(176079..176891) /gene="dapD" /locus_tag="SF0156" /note="2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional; Region: dapD; PRK11830" /db_xref="CDD:236996" gene complement(176922..179594) /gene="glnD" /locus_tag="SF0157" /db_xref="GeneID:1024456" CDS complement(176922..179594) /gene="glnD" /locus_tag="SF0157" /note="Code: O; COG: COG2844" /codon_start=1 /transl_table=11 /product="PII uridylyl-transferase" /protein_id="NP_706112.1" /db_xref="GeneID:1024456" /translation="MNTLPEQYANTALSTLPGQPQNPCAWPRDELTVCGIKAHIDTFQ RWLGDAFDNGISAEQLIEARTEFIDQLLQRLWIEAGFSQIADLALVAVGGYGRGELHP LSDIDLLILSRKKLPDDQAQKVGELLTLLWDVKLEVGHSVRTLEECMLEGLSDLTVAT NLIESRLLIGDVALFLELQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTSAERAELNECLHILWRIRFAL HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNEPVERMMKDYFRVTRRVSELNQMLLQLF DEAILALPADEKPRPLDDEFQLRGTLIDLRDETLFMRQPEAILRMFYTMVRNSAITGI YSTTLRQLRHARRHLQQPLCNIPQARKLFLSILRHPGAVRRGLLPMHRHSVLGAYMPQ WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFASEETRQRHPLCVDVWPRLPSTELIF IAALFHDIAKGRGGDHSILGAQDVVHFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR DIQDPEVIKQFAEEVQTENRLRYLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEEALHQIWSRCRANYFVRHSPNQLAW HARHLLQHDLSKPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI FTTRDGMAMDTFIVLEPDGSPLSADRHEVIRFGLEQVLTQSSWQPPQPRRQPAKLRHF TVETEVTFLPTHTDRKSFLELIALDQPGLLARVGKIFADLGISLHGARITTIGERVED LFIIATADRRALNNELQQEVHQRLTEALNPNDKG" misc_feature complement(176925..179576) /gene="glnD" /locus_tag="SF0157" /note="bifunctional uridylyltransferase/uridylyl-removing protein GlnD; Region: PRK05007" /db_xref="CDD:235329" gene complement(179656..180450) /gene="map" /locus_tag="SF0158" /db_xref="GeneID:1024468" CDS complement(179656..180450) /gene="map" /locus_tag="SF0158" /note="Code: J; COG: COG0024" /codon_start=1 /transl_table=11 /product="methionine aminopeptidase" /protein_id="NP_706113.1" /db_xref="GeneID:1024468" /translation="MAISIKTPEDIEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRI CNDYIVNEQHAVSACLGYHGYPKSVCISINEVVCHGIPDDAKLLKDGDIVNIDVTVIK DGFHGDTSKMFIVGKPTIMGERLCRITQESLYLALRMVKPGINLREIGAAIQKFVEAE GFSVVREYCGHGIGRGFHEEPQVLHYDSRETNVVLKPGMTFTIEPMVNAGKKEIRTMK DGWTVKTKDRSLSAQYEHTIVVTDNGCEILTLRKDDTIPAIISHDE" misc_feature complement(179689..180450) /gene="map" /locus_tag="SF0158" /note="methionine aminopeptidase; Validated; Region: PRK05716" /db_xref="CDD:235576" misc_feature complement(order(179746..179748,179839..179841, 179938..179940,180127..180129,180160..180162, 180214..180216)) /gene="map" /locus_tag="SF0158" /note="active site" /db_xref="CDD:238519" gene 180818..181543 /gene="rpsB" /locus_tag="SF0159" /db_xref="GeneID:1024473" CDS 180818..181543 /gene="rpsB" /locus_tag="SF0159" /note="Code: J; COG: COG0052" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S2" /protein_id="NP_706114.2" /db_xref="GeneID:1024473" /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE KTVPMFNEALAELNKIVSRKGKILFVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLT NWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVA ATVREGRSQDLASQAEESFVEAE" misc_feature 180818..181540 /gene="rpsB" /locus_tag="SF0159" /note="30S ribosomal protein S2; Provisional; Region: rpsB; PRK05299" /db_xref="CDD:235396" misc_feature order(180890..180895,180920..180928,181100..181102, 181106..181114,181121..181126,181340..181342, 181349..181351) /gene="rpsB" /locus_tag="SF0159" /note="rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:100106" misc_feature order(181346..181351,181355..181357,181397..181408) /gene="rpsB" /locus_tag="SF0159" /note="S8 interaction site [active]" /db_xref="CDD:100106" misc_feature 181451..181468 /gene="rpsB" /locus_tag="SF0159" /note="putative laminin-1 binding site [active]" /db_xref="CDD:100106" gene 181801..182652 /gene="tsf" /locus_tag="SF0160" /db_xref="GeneID:1024436" CDS 181801..182652 /gene="tsf" /locus_tag="SF0160" /note="Code: J; COG: COG0264" /codon_start=1 /transl_table=11 /product="elongation factor Ts" /protein_id="NP_706115.1" /db_xref="GeneID:1024436" /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS GAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVA GKITDVEVLKAQFEEERVALVAKIGENINIRRVAALEGDVLGSYQHGARIGVLVAAKG ADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEG RMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEV AAMSKQS" misc_feature 181804..182646 /gene="tsf" /locus_tag="SF0160" /note="Translation elongation factor EF-Ts [Translation, ribosomal structure and biogenesis]; Region: Tsf; COG0264" /db_xref="CDD:440034" gene 182799..183524 /gene="pyrH" /locus_tag="SF0161" /db_xref="GeneID:1024474" CDS 182799..183524 /gene="pyrH" /locus_tag="SF0161" /note="Code: F; COG: COG0528" /codon_start=1 /transl_table=11 /product="uridylate kinase" /protein_id="NP_706116.1" /db_xref="GeneID:1024474" /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA RLMSAIPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV VLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVF NMNKPGALRRVVMGEKEGTLITE" misc_feature 182811..183521 /gene="pyrH" /locus_tag="SF0161" /note="Uridylate kinase [Nucleotide transport and metabolism]; Region: PyrH; COG0528" /db_xref="CDD:440294" gene 183816..184373 /gene="frr" /locus_tag="SF0162" /db_xref="GeneID:1024426" CDS 183816..184373 /gene="frr" /locus_tag="SF0162" /note="Code: J; COG: COG0233" /codon_start=1 /transl_table=11 /product="ribosome recycling factor" /protein_id="NP_706117.1" /db_xref="GeneID:1024426" /translation="MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEY YGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPL PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDV QKLTDAAIKKIEAALADKEAELMQF" misc_feature 183816..184370 /gene="frr" /locus_tag="SF0162" /note="Ribosome recycling factor [Translation, ribosomal structure and biogenesis]; Region: Frr; COG0233" /db_xref="CDD:440003" misc_feature order(183900..183911,184119..184130) /gene="frr" /locus_tag="SF0162" /note="hinge region; other site" /db_xref="CDD:238288" gene 184465..185661 /gene="yaeM" /locus_tag="SF0163" /db_xref="GeneID:1024469" CDS 184465..185661 /gene="yaeM" /locus_tag="SF0163" /note="Code: I; COG: COG0743" /codon_start=1 /transl_table=11 /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" /protein_id="NP_706118.1" /db_xref="GeneID:1024469" /translation="MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVE QCLEFSPRYAVMDDEASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEEVDQVMAAIV GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSL PQPIQHNLGYADLEQNGVVSILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKI SVDSATMMNKGLEYIEARWLFNASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM RTPIAHTMAWPNRVNSGVKPLDFCKLSALTFAAPDYERYPCLKLAMEAFEQGQAATTA LNAANEITVAAFLAQQIRFTDIAALNLSVLEKMDMREPQCVDDVLSVDANASEVARKE VMRLAS" misc_feature 184465..185658 /gene="yaeM" /locus_tag="SF0163" /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional; Region: PRK05447" /db_xref="CDD:235472" gene 185847..186608 /gene="yaeS" /locus_tag="SF0164" /db_xref="GeneID:1024481" CDS 185847..186608 /gene="yaeS" /locus_tag="SF0164" /note="Code: I; COG: COG0020" /codon_start=1 /transl_table=11 /product="undecaprenyl pyrophosphate synthase" /protein_id="NP_706119.1" /db_xref="GeneID:1024481" /translation="MMLSATQPLSEKLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHK AGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHR HNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAE KVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTD VLWPDFDEQDFEGALNAFANRERRFGGTEPGDETA" misc_feature 185919..186605 /gene="yaeS" /locus_tag="SF0164" /note="(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase; Region: PRK10240" /db_xref="CDD:182326" misc_feature order(185919..185936,185961..185963,185973..185975, 185985..185987,185994..185996,186051..186053, 186075..186077,186087..186089,186108..186113, 186120..186122,186267..186269,186426..186428, 186444..186446,186450..186452) /gene="yaeS" /locus_tag="SF0164" /note="active site" /db_xref="CDD:259850" misc_feature order(186288..186293,186297..186302,186309..186314, 186360..186368,186375..186377,186408..186410, 186441..186455,186462..186470,186474..186488, 186492..186494) /gene="yaeS" /locus_tag="SF0164" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:259850" gene 186729..187478 /gene="cdsA" /locus_tag="SF0165" /db_xref="GeneID:1024478" CDS 186729..187478 /gene="cdsA" /locus_tag="SF0165" /note="Code: I; COG: COG0575" /codon_start=1 /transl_table=11 /product="CDP-diglyceride synthetase" /protein_id="NP_706120.4" /db_xref="GeneID:1024478" /translation="MLAAWEWGQLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNI HQPLVEISLWASLGWWIVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLAL RAWHYDENHYSGAIWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGG LATAAVISWGYGMWANLDVAPVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLI PGHGGILDRIDSLTAAVPVFACLLLLVFRTL" misc_feature 186729..187475 /gene="cdsA" /locus_tag="SF0165" /note="phosphatidate cytidylyltransferase; Region: cdsA; PRK11624" /db_xref="CDD:183240" gene 187490..188842 /gene="yaeL" /locus_tag="SF0166" /db_xref="GeneID:1024451" CDS 187490..188842 /gene="yaeL" /locus_tag="SF0166" /note="Code: M; COG: COG0750" /codon_start=1 /transl_table=11 /product="zinc metallopeptidase RseP" /protein_id="NP_706121.2" /db_xref="GeneID:1024451" /translation="MLSFLWDLASFIVALGVLITVHEFGHFWVARRCGVRVERFSIGF GKALWRRTDKLGTEYVIALIPLGGYVKMLDERAEPVVPELRHHAFNNKSVGQRAAIIA AGPVANFIFAIFAYWLVFIIGVPGVRPVVGEIAANSIAAEAQIAPGTELKAVDGIETP DWDAVRLQLVDKIGDESTTITVAPFDSDQRRDVKLDLRHWAFEPDKEDPVSSLGIRPR GPQIEPVLENVQPNSAASKAGLQAGDRIVKVDGQPLTQWVTFVMLVRDNPGKSLALEI ERQGSPLSLTLIPESKPGNGKAIGFVGIEPKVIPLPDEYKVVRQYGPFNAIVEATDKT WQLMKLTVSMLGKLITGDVKLNNLSGPISIAKGAGMTAELGVVYYLPFLALISVNLGI INLFPLPVLDGGHLLFLAIEKIKGGPVSERVQDFCYRIGSILLVLLMGLALFNDFSRL " misc_feature 187493..188839 /gene="yaeL" /locus_tag="SF0166" /note="sigma E protease regulator RseP; Region: PRK10779" /db_xref="CDD:182723" gene 188872..191304 /gene="yaeT" /locus_tag="SF0167" /db_xref="GeneID:1024444" CDS 188872..191304 /gene="yaeT" /locus_tag="SF0167" /note="Code: M; COG: COG0729" /codon_start=1 /transl_table=11 /product="outer membrane protein assembly factor YaeT" /protein_id="NP_706122.1" /db_xref="GeneID:1024444" /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGDTLLVQVKERPTIASITFSGN KSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPR NRVDLKLVFQEGVSAEIQQINIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQK LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYVTVNITEGDQYKLSGVEVSGN LAGHSAEIEQLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSMPEINDADKT VKLRVNVDAGNRFYVRKIRFEGNDTSKDAVLRREMRQMEGAWLGSDLVDQGKERLNRL GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL GTGYAVGINGTKNDYQTYAELSVTNPYFTVDGVSLGGRLFYNDFQADDADLSDYTNKS YGTDVTLGFPINEYNSLRAGLGYVHNSLSNMQPQVAMWRYLYSMGEHPSTSDQDNSFK TDDFTFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVTLDTATYVPIDDD HKWVVLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYFPHQASNY DPDYDYECATQDGAKDLCKSDDAVGGNAMAVASLEFITPTPFISDKYANSVRTSFFWD MGTVWDTNWDSSQYSGYPDYSDPSNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDK AEQFQFNIGKTW" misc_feature 188872..191301 /gene="yaeT" /locus_tag="SF0167" /note="outer membrane protein assembly factor YaeT; Provisional; Region: PRK11067" /db_xref="CDD:236834" gene 191426..191911 /gene="hlpA" /locus_tag="SF0168" /db_xref="GeneID:1024435" CDS 191426..191911 /gene="hlpA" /locus_tag="SF0168" /note="Code: M; COG: COG2825" /codon_start=1 /transl_table=11 /product="periplasmic chaperone" /protein_id="NP_706123.1" /db_xref="GeneID:1024435" /translation="MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQQVAQKTGVSN TLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFE QDRARRSNEERGKLVTRIQTAVKSVANSQDIDLVVDANAVAYNSSDVKDITADVLKQV K" misc_feature 191426..191908 /gene="hlpA" /locus_tag="SF0168" /note="molecular chaperone Skp; Region: PRK10780" /db_xref="CDD:182724" gene 191915..192940 /gene="lpxD" /locus_tag="SF0169" /db_xref="GeneID:1024439" CDS 191915..192940 /gene="lpxD" /locus_tag="SF0169" /note="Code: M; COG: COG1044" /codon_start=1 /transl_table=11 /product="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase" /protein_id="NP_706124.1" /db_xref="GeneID:1024439" /translation="MPSIRLADLAQQLDAELHGDGDIVITGVASMQSAQTGHITFMVN PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP SAVIDATAKLGNNVSIGANAVIESGVELGDNVIIGAGCFVGKNSKIGAGSRLWANVTI YHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTIDRG ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKSLE RKVNQQD" misc_feature 191918..192934 /gene="lpxD" /locus_tag="SF0169" /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional; Region: lpxD; PRK00892" /db_xref="CDD:234858" gene 193045..193500 /gene="fabZ" /locus_tag="SF0170" /db_xref="GeneID:1024429" CDS 193045..193500 /gene="fabZ" /locus_tag="SF0170" /note="Code: I; COG: COG0764" /codon_start=1 /transl_table=11 /product="(3R)-hydroxymyristoyl-ACP dehydratase" /protein_id="NP_706125.2" /db_xref="GeneID:1024429" /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV SVNEPFFQGHFPGKPIFPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA" misc_feature 193048..193494 /gene="fabZ" /locus_tag="SF0170" /note="3-hydroxyacyl-ACP dehydratase FabZ; Region: fabZ; PRK00006" /db_xref="CDD:234568" gene 193504..194292 /gene="lpxA" /locus_tag="SF0171" /db_xref="GeneID:1027519" CDS 193504..194292 /gene="lpxA" /locus_tag="SF0171" /note="Code: M; COG: COG1043" /codon_start=1 /transl_table=11 /product="acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase" /protein_id="NP_706126.1" /db_xref="GeneID:1027519" /translation="MIDKSAFVHPTAIVEEGASIGANAHIGPFCIVGPHVEIGEGTVL KSHVVVNGHTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT VQGGGLTKVGSDNLLMINAHIAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREAITAIRNA YKLIYRSGKTLDEVKPEIAELAETYPEVKAFTDFFARSTRGLIR" misc_feature 193513..194289 /gene="lpxA" /locus_tag="SF0171" /note="acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase; Region: PRK05289" /db_xref="CDD:235390" gene 194292..195440 /gene="lpxB" /locus_tag="SF0172" /db_xref="GeneID:1024463" CDS 194292..195440 /gene="lpxB" /locus_tag="SF0172" /note="Code: M; COG: COG0763" /codon_start=1 /transl_table=11 /product="lipid-A-disaccharide synthase" /protein_id="NP_706127.2" /db_xref="GeneID:1024463" /translation="MTDQRPLTIALVAGETSGDILGAGLIRALKERVPNARFVGVAGP RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTKRFGELKPDVFVGIDAPDF NITLEGNLKKQGIKTIHYVSPSVWAWRQKRVFKIGRATDLVLAFLPFEKAFYDKYNVP CRFIGHTMADAMPLDPDKNGARDVLGIPYDAHCLALLPGSRGAEVEMLSADFLKTAQL LRQTYPDLEIVVPLVNAKRREQFERIKAEVAPDLSVHLLDGMGREAMVASDAALLASG TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTDYVSLPNLLAGRELVKELLQEECEP QKLAAALLPLLANGKTSHAMHDTFRELHQQIRCNADEQAAQAVLELAQ" misc_feature 194292..195431 /gene="lpxB" /locus_tag="SF0172" /note="lipid-A-disaccharide synthase; Region: lpxB; TIGR00215" /db_xref="CDD:129319" gene 195437..196033 /gene="rnhB" /locus_tag="SF0173" /db_xref="GeneID:1024448" CDS 195437..196033 /gene="rnhB" /locus_tag="SF0173" /note="Code: L; COG: COG0164" /codon_start=1 /transl_table=11 /product="ribonuclease HII" /protein_id="NP_706128.1" /db_xref="GeneID:1024448" /translation="MIEFVYPHTQLVAGVDEVGRGPLVGAVVTAAVILDPARPIAGLN DSKKLSEKRRLALYEEIKEKALSWSLGRAEPHEIDELNILHATMLAMQRAVAGLHIAP EYVLIDGNRCPKLPMPAMAVVKGDSRVPEISAASILAKVTRDAEMAALDIVFPQYGFA QHKGYPTAFHLEKLAEYGATEHHRRSFGPVKRALGLAS" misc_feature 195464..196018 /gene="rnhB" /locus_tag="SF0173" /note="Ribonuclease HII [Replication, recombination and repair]; Region: RnhB; COG0164" /db_xref="CDD:439934" gene 196070..199552 /gene="dnaE" /locus_tag="SF0174" /db_xref="GeneID:1024450" CDS 196070..199552 /gene="dnaE" /locus_tag="SF0174" /note="Code: L; COG: COG0587" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit alpha" /protein_id="NP_706129.1" /db_xref="GeneID:1024450" /translation="MSEPRFVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDF TNLCGLVKFYGAGHGAGIKPIVGADFNVQCDLLGDELTHLTVLAANNTGYQNLALLIS KAYQRGYGAAGPIIDRDWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEE HFPDRYFLELIRTGRPDEESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVA IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEY FLPQFPTGDMSTEDYLVKRAKEGLEERLAFLFPDEEERLKRRPEYDERLETELQVINQ MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG HPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIYEADEEVKALIDMARKLEGVTRNA GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPDVQWQHESLKSVLEPTYG IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFAEGAEKNGINAEL AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV GLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEGPIEAIIEARNKG GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK AEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE IERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSGRLEVML FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL RGLIGSEQVELEFD" misc_feature 196082..199522 /gene="dnaE" /locus_tag="SF0174" /note="DNA polymerase III subunit alpha; Validated; Region: dnaE; PRK05673" /db_xref="CDD:235554" gene 199565..200524 /gene="accA" /locus_tag="SF0175" /db_xref="GeneID:1024428" CDS 199565..200524 /gene="accA" /locus_tag="SF0175" /note="Code: I; COG: COG0825" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase carboxyltransferase subunit alpha" /protein_id="NP_706130.1" /db_xref="GeneID:1024428" /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR EKSVELTRKIFADLGAWQIAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV GGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITF IDTPGAYPGVGAEERGQSEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVN MLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH RNPEAMAASLKAQLLADLADLDVLSTEDLKNRRYQRLMSYGYA" misc_feature 199574..200518 /gene="accA" /locus_tag="SF0175" /note="Acetyl-CoA carboxylase alpha subunit [Lipid transport and metabolism]; Region: AccA; COG0825" /db_xref="CDD:440587" gene 200623..202764 /gene="ldcC" /locus_tag="SF0176" /db_xref="GeneID:1024434" CDS 200623..202764 /gene="ldcC" /locus_tag="SF0176" /note="Code: E; COG: COG1982" /codon_start=1 /transl_table=11 /product="lysine decarboxylase LdcC" /protein_id="NP_706131.1" /db_xref="GeneID:1024434" /translation="MNIIAIMGPHGVFYKDEPIKELESALVAQGFQIIWPQNSVDLLK FIEHNPRICGVIFDWDEYSLDLCSDINQLNEYLPLYAFINTHSTMDVSVQDMRMALWF FEYALGQAEDIAIRMRQYTNEYLDNITPPFTKALFTYVKERKYTFCTPGHMGGTAYQK SPVGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYIVTN GISTSNKIVGMYAAPSGSTLLIDRNCHKSLAHLLMMNDVVPVWLKPTRNALGILGGIP RREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTLDVPSIHFDSAWV PYTHFHPIYQGKSGMSGERVAGKVFFETQSTHKMLAALSQASLIHIKGEYDEEAFNEA FMMHTTTSPSYPIVASVKTAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWF FDIWQPPQVDEAECRPVAPGEQWHGFNDADADHMFLDPVKVTILTPGMDEQGNMSEEG IPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKRSYDLNLRI KNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRKHDLSGLMLRAFDTLPEMIMTPHQAW QRQIKGEVETIALEQLVGRVSANMILPYPPGVPLLMPGEMLTKESRTVLDFLLMLCSV GQHYPGFETDIHGAKQDEDGVYRVRVLKMAG" misc_feature 200623..202761 /gene="ldcC" /locus_tag="SF0176" /note="lysine decarboxylase; Region: PRK15399" /db_xref="CDD:185297" gene 202794..203210 /gene="yaeR" /locus_tag="SF0177" /db_xref="GeneID:1024432" CDS 202794..203210 /gene="yaeR" /locus_tag="SF0177" /note="Code: E; COG: COG0346" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706132.3" /db_xref="GeneID:1024432" /translation="MLLTNKGDVMLGLKQVHHIAIIATDYAVSKAFYCDILGFTLQSE VYREARDSWKGDLALNGQYVIELFSFPFPPERPSRPEACGLRHLAFSVDDIDAAVAHL ESHNVKCEAIRVDPYTQKRFTFFNDPDGLPLELYEQ" misc_feature 202821..203207 /gene="yaeR" /locus_tag="SF0177" /note="VOC family protein; Region: PRK11478" /db_xref="CDD:183156" gene 203275..204573 /gene="tilS" /locus_tag="SF0178" /db_xref="GeneID:1025964" CDS 203275..204573 /gene="tilS" /locus_tag="SF0178" /note="Code: D; COG: COG0037" /codon_start=1 /transl_table=11 /product="tRNA(Ile)-lysidine synthetase" /protein_id="NP_706133.1" /db_xref="GeneID:1025964" /translation="MTLTLNRQLLTSRQILVAFSGGLDSTVLLHQLVQWRTENPGVTL RAIHVHHGLSANADAWVTHCENVCQQWQVPLVVERVQLAQEGLGIEAQARQARYQAFA RTLLPGEVLVTAQHLDDQCETFLLALKRGSGPAGLSAMAEVSEFAGTRLIRPLLARTR GELEQWALAHGLRWIEDESNQDDSYDRNFLRLRVVPLLQQRWPHFAEATARSATLCAE QESLLDELLADDLAHCQTSQGTLQIAPMLAMSDARRAAIIRRWLAGQNAPMPSRDALV RIWQEVALAREDASPCLRLGAFEIRRYQSQLWWIKSITGQSETIVLWQTWLQPLELPA GLGTVQLTAGGDIRPPRADEAVSVRFKAPGLLHIVGRNGGRKLKKIWQELGVPPWLRD TTPLLFYGETLIAAAGVFVTQEGVAEGENGVSFVWQKTLS" misc_feature 203275..204570 /gene="tilS" /locus_tag="SF0178" /note="tRNA(Ile)-lysidine synthetase; Provisional; Region: tilS; PRK10660" /db_xref="CDD:182626" gene complement(204622..204882) /gene="yaeO" /locus_tag="SF0179" /db_xref="GeneID:1024472" CDS complement(204622..204882) /gene="yaeO" /locus_tag="SF0179" /codon_start=1 /transl_table=11 /product="Rho-binding antiterminator" /protein_id="NP_706134.1" /db_xref="GeneID:1024472" /translation="MSMNDTYQPINCDDYDNLELACQHHLMLTLELKDGEKLQAKASD LVSRKNVEYLVVEAAGETRELRLDKITSFSHPEIGTVVVSES" misc_feature complement(204625..204876) /gene="yaeO" /locus_tag="SF0179" /note="Rho-binding antiterminator; Provisional; Region: PRK11625" /db_xref="CDD:183241" gene complement(204869..205087) /gene="yaeP" /locus_tag="SF0180" /db_xref="GeneID:1024470" CDS complement(204869..205087) /gene="yaeP" /locus_tag="SF0180" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706135.1" /db_xref="GeneID:1024470" /translation="MLTGGHVEKYCELIRKRYAEIASGDLGYVPDALGCVLKVLNEMA ADDALSEAVREKAAYAAANLLVSDYVNE" misc_feature complement(204872..205069) /gene="yaeP" /locus_tag="SF0180" /note="hypothetical protein; Provisional; Region: PRK04964" /db_xref="CDD:179901" gene 205235..205780 /gene="yaeQ" /locus_tag="SF0181" /db_xref="GeneID:1024443" CDS 205235..205780 /gene="yaeQ" /locus_tag="SF0181" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706136.1" /db_xref="GeneID:1024443" /translation="MALKATIYKATVNVADLDRNQFLDASLTLARHPSETQERMMLRL LAWLKYADERLQFTRGLCADDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQAAEV ALFTYNSRAAQIWWQQNQSKCVQFANLSVWYLDDEQLAKVSAFADRTMTLQATIQDGV IWLSDDKNNLEVNLTAWQQPS" misc_feature 205238..205774 /gene="yaeQ" /locus_tag="SF0181" /note="Uncharacterized conserved protein YaeQ, suppresses RfaH defect [Function unknown]; Region: YaeQ; COG4681" /db_xref="CDD:443717" gene 205777..206199 /gene="yaeJ" /locus_tag="SF0182" /db_xref="GeneID:1025965" CDS 205777..206199 /gene="yaeJ" /locus_tag="SF0182" /note="Code: J; COG: COG1186" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706137.1" /db_xref="GeneID:1025965" /translation="MIVISRHVAIPDGELEITAIRAQGAGGQHVNKTSTAIHLRFDIR ASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAVIKDLTKEQ KARRPTRPTRASKERRLASKAQKSSVKAMRGKVRSGRE" misc_feature 205777..206184 /gene="yaeJ" /locus_tag="SF0182" /note="aminoacyl-tRNA hydrolase; Region: PRK09256" /db_xref="CDD:181730" gene 206213..206923 /gene="cutF" /locus_tag="SF0183" /db_xref="GeneID:1027537" CDS 206213..206923 /gene="cutF" /locus_tag="SF0183" /note="Code: MP; COG: COG3015" /codon_start=1 /transl_table=11 /product="copper homeostasis and adhesion lipoprotein" /protein_id="NP_706138.1" /db_xref="GeneID:1027537" /translation="MVKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPMPQS WRGVLPCADCEGIEISLFLEKDGTWVMNERYLGAREEPSSFASYGTWARTADKLVLTD SKGEKSYYRAKGDALEMLDREGNPIESQFNYTLEPAQSSLPMTPMTLRGMYFYMADAA TFTDCATGKRFMVANNAELERSYLAARGHSEKPVLLSVEGHFTLEANPDTGAPTKVLA PDTAGKFYPNKDCSSLGQ" misc_feature 206213..206911 /gene="cutF" /locus_tag="SF0183" /note="envelope stress response activation lipoprotein NlpE; Region: PRK10523" /db_xref="CDD:236708" gene complement(207078..207902) /gene="yaeF" /locus_tag="SF0184" /db_xref="GeneID:1024460" CDS complement(207078..207902) /gene="yaeF" /locus_tag="SF0184" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706139.2" /db_xref="GeneID:1024460" /translation="MDKPKAYCRLLLPSFLLLSACTVDISQPDPSATAVDAEAKTWAV KFQHQSSFTEQSIKEITAPDLKPGDLLFSSSLGVTSFGIRVFSTSSVSHVAIFLGDNN VAEATGAGVQIVSLKKAMKHSDKLFVLRVPDLTPQQATDITAFANKIKDSGYNYRGIV EFIPFMVTRQMCSLNPFSEDFRQQCVSDLAKAQLSSVCEGDKKSWFCSEFVTDAFAKS GHPLTLAQSGWISPADLMHMRIGDVSAFKPETQLQYVGHLKPGIYIKAGRFVGLTQ" misc_feature complement(207081..207902) /gene="yaeF" /locus_tag="SF0184" /note="YaeF family permuted papain-like enzyme; Region: PRK11479" /db_xref="CDD:183157" gene complement(207955..209673) /gene="proS" /locus_tag="SF0185" /db_xref="GeneID:1024449" CDS complement(207955..209673) /gene="proS" /locus_tag="SF0185" /note="Code: J; COG: COG0442" /codon_start=1 /transl_table=11 /product="prolyl-tRNA synthetase" /protein_id="NP_706140.2" /db_xref="GeneID:1024449" /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP TGVRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER PFVLGPTHEEVITDLIRNELSSYKQLPLNFYQIQTKFRDEVRPRFGVMRSREFLMKDA YSFHTSQESLQETYDAMYAAYSKIFSRMGLDFRAVQADTGSIGGSASHEFQVLAQSGE DDVVFSDTSDYAANIELAEAIAPKEPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK TVKTLLVKAVEGSSFPLVALLVRGDHELNEVKAEKLPQVASPLTFATEEEIRAVVKAG PGSLGPVNMPIPVVIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPEVADIRNVVA GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR VVAAAIEQNYDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL LDDRKERPGVMFADMELIGIPHTIVLGDRNLDNDDIEYKYRRNGEKQLIKTGDIVEYL VKQIKG" misc_feature complement(207961..209673) /gene="proS" /locus_tag="SF0185" /note="prolyl-tRNA synthetase; Provisional; Region: PRK09194" /db_xref="CDD:236405" gene complement(209784..210491) /gene="yaeB" /locus_tag="SF0186" /db_xref="GeneID:1024442" CDS complement(209784..210491) /gene="yaeB" /locus_tag="SF0186" /note="Code: S; COG: COG1720" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706141.1" /db_xref="GeneID:1024442" /translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSANGELHLIASYNQ ADAVRGLEAFSHLWILFVFHQTMEGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM SLVELKEVVCHKGSVILKLGSLDLVDGTPVVDIKPYLPFAESLPDASASYAQSAPAAE MAVSFTAEVEKQLLTLEKRYPQLTLFIREVLAQDPRPAYRKGEETGKTYAVWLHDFNV RWRVTDAGFEVFALEPR" misc_feature complement(210003..210485) /gene="yaeB" /locus_tag="SF0186" /note="tRNA (Thr-GGU) A37 N6-methylase [Translation, ribosomal structure and biogenesis]; Region: TrmO; COG1720" /db_xref="CDD:441326" misc_feature complement(order(210078..210095,210192..210194, 210198..210200,210204..210206,210216..210233, 210306..210308,210318..210320,210339..210341, 210345..210353,210465..210467)) /gene="yaeB" /locus_tag="SF0186" /note="homodimer interaction site [polypeptide binding]; other site" /db_xref="CDD:187753" misc_feature complement(order(210102..210104,210117..210119, 210186..210188,210192..210194,210216..210218, 210300..210305,210309..210311)) /gene="yaeB" /locus_tag="SF0186" /note="cofactor binding site [active]" /db_xref="CDD:187753" misc_feature complement(209823..210017) /gene="yaeB" /locus_tag="SF0186" /note="TrmO C-terminal domain; Region: TrmO_C; pfam18389" /db_xref="CDD:465738" gene complement(210488..210892) /gene="rcsF" /locus_tag="SF0187" /db_xref="GeneID:1024445" CDS complement(210488..210892) /gene="rcsF" /locus_tag="SF0187" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_706142.1" /db_xref="GeneID:1024445" /translation="MRALPICLVALMLSGCSMLSRSPVEPVQSTAPQPKAEPAKPKAP RATPVRIYTNAEELVGKPFRDLGEVSGDSCQASNQDSPPSIPTARKQMQINASKMKAN AVLLHSCEVTSGTPGCYRQAVCIGSALNITAK" misc_feature complement(210494..210892) /gene="rcsF" /locus_tag="SF0187" /note="Rcs stress response system protein RcsF; Region: rcsF; PRK10781" /db_xref="CDD:182725" gene complement(211010..211825) /gene="metQ" /locus_tag="SF0188" /db_xref="GeneID:1024368" CDS complement(211010..211825) /gene="metQ" /locus_tag="SF0188" /note="Code: M; COG: COG1464" /codon_start=1 /transl_table=11 /product="DL-methionine transporter substrate-binding protein" /protein_id="NP_706143.1" /db_xref="GeneID:1024368" /translation="MAFKFKTFAAVGALIGSLALVGCGQDEKDPNHIKVGVIVGAEQQ VAEVAQKVAKDKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQLKDRGYK LVAVGNTFVYPIAGYSKKIKSLDELQDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG VGLLPTVLDVVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW" misc_feature complement(211013..211825) /gene="metQ" /locus_tag="SF0188" /note="D-methionine ABC transporter substrate-binding protein MetQ; Region: metQ; PRK11063" /db_xref="CDD:182939" misc_feature complement(order(211139..211141,211214..211216, 211220..211222,211394..211396,211403..211405, 211490..211492,211553..211555,211562..211570, 211619..211621)) /gene="metQ" /locus_tag="SF0188" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270316" gene complement(211865..212518) /gene="yaeE" /locus_tag="SF0189" /db_xref="GeneID:1024394" CDS complement(211865..212518) /gene="yaeE" /locus_tag="SF0189" /note="Code: R; COG: COG2011" /codon_start=1 /transl_table=11 /product="DL-methionine transporter permease" /protein_id="NP_706144.1" /db_xref="GeneID:1024394" /translation="MSEPMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG QIIANAKLYRTVSAIVNIFRSIPFIILLVWMIPFTRVIVGTSIGLQAAIVPLTVGAAP FIARMVENALLEIPTGLIEASRAMGATPMQIVCKVLLPEALPGLVNAATITLITLVGY SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVILVYLIQFAGDRIVRAVTRK" misc_feature complement(211868..212518) /gene="yaeE" /locus_tag="SF0189" /note="D-methionine ABC transporter permease MetI; Region: PRK10782" /db_xref="CDD:182726" misc_feature complement(order(212027..212044,212291..212335)) /gene="yaeE" /locus_tag="SF0189" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(212096..212098,212108..212113, 212129..212167)) /gene="yaeE" /locus_tag="SF0189" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(212511..213542) /gene="metN" /locus_tag="SF0190" /db_xref="GeneID:1024446" CDS complement(212511..213542) /gene="metN" /locus_tag="SF0190" /note="Code: R; COG: COG1135" /codon_start=1 /transl_table=11 /product="DL-methionine transporter ATP-binding protein" /protein_id="NP_706145.1" /db_xref="GeneID:1024446" /translation="MIKLSNITKVFHQGTRTIQALNNVSRHVPAGQIYGVIGASGAGK STLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN VALPLELDNTPKDEIKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQTEPFTDCVPMLRLEFTGQ SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEHH VKVEVLGYV" misc_feature complement(212514..213542) /gene="metN" /locus_tag="SF0190" /note="DL-methionine transporter ATP-binding subunit; Provisional; Region: metN; PRK11153" /db_xref="CDD:236863" gene 213730..214305 /gene="yaeD" /locus_tag="SF0191" /db_xref="GeneID:1024365" CDS 213730..214305 /gene="yaeD" /locus_tag="SF0191" /note="Code: E; COG: COG0241" /codon_start=1 /transl_table=11 /product="D,D-heptose 1,7-bisphosphate phosphatase" /protein_id="NP_706146.1" /db_xref="GeneID:1024365" /translation="MAKSVPAIFLDRDGTINVDHGYVHEIDNFEFIDGVIDAMRELKK MGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEE FRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGDKLEDMQAAVAANVGTKVLVRTGKP ITPEAENAADWVLNSLADLPQAIKKQQKPAQ" misc_feature 213742..214272 /gene="yaeD" /locus_tag="SF0191" /note="D,D-heptose 1,7-bisphosphate phosphatase; Region: GmhB_yaeD; TIGR00213" /db_xref="CDD:129317" gene 214669..216209 /gene="rrsH" /locus_tag="SF4435" /db_xref="GeneID:1024454" rRNA 214669..216209 /gene="rrsH" /locus_tag="SF4435" /product="16S ribosomal RNA" /db_xref="GeneID:1024454" gene 216278..216354 /locus_tag="SF4436" /db_xref="GeneID:3161852" tRNA 216278..216354 /locus_tag="SF4436" /product="tRNA-Ile" /codon_recognized="AUC" /db_xref="GeneID:3161852" gene 216397..216472 /locus_tag="SF4437" /db_xref="GeneID:3161851" tRNA 216397..216472 /locus_tag="SF4437" /product="tRNA-Ala" /codon_recognized="GCA" /db_xref="GeneID:3161851" gene 216745..216820 /locus_tag="SF4438" /db_xref="GeneID:3161850" tRNA 216745..216820 /locus_tag="SF4438" /product="tRNA-Glu" /codon_recognized="GAA" /db_xref="GeneID:3161850" gene 217014..219917 /gene="rrlH" /locus_tag="SF4439" /db_xref="GeneID:1024453" rRNA 217014..219917 /gene="rrlH" /locus_tag="SF4439" /product="23S ribosomal RNA" /db_xref="GeneID:1024453" gene 220012..220130 /gene="rrfH" /locus_tag="SF4440" /db_xref="GeneID:1024455" rRNA 220012..220130 /gene="rrfH" /locus_tag="SF4440" /product="5S ribosomal RNA" /db_xref="GeneID:1024455" gene 220183..220259 /locus_tag="SF4441" /db_xref="GeneID:3161776" tRNA 220183..220259 /locus_tag="SF4441" /product="tRNA-Asp" /codon_recognized="GAC" /db_xref="GeneID:3161776" gene 220422..221225 /gene="dkgB" /locus_tag="SF0192" /db_xref="GeneID:1024367" CDS 220422..221225 /gene="dkgB" /locus_tag="SF0192" /note="Code: R; COG: COG0656" /codon_start=1 /transl_table=11 /product="2,5-diketo-D-gluconate reductase B" /protein_id="NP_706147.1" /db_xref="GeneID:1024367" /translation="MAIPAFGLGTFRLKDDVVISSVKTALELGYRAIDTAQIYDNEAA VGQAIAESGVPRHELYITTKIWIENLSKDKLIPSLKESLQKLRTDYVDLTLIHWPSPN DEVSVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGAENIATNQIELSPYLQ NRKVVAWAKQHGIHITSYMTLAYGKALKDEVIARIAAKHNAIPAQVILAWAMGEGYSV IPSSTKRKNLESNLKAQNLQLDAEDKKAIAALDCNDRLVSPEGLAPEWD" misc_feature 220422..221222 /gene="dkgB" /locus_tag="SF0192" /note="2,5-didehydrogluconate reductase DkgB; Region: dkgB; PRK11172" /db_xref="CDD:183012" misc_feature order(220446..220454,220521..220523,220533..220538, 220611..220613,220710..220715,220806..220811, 220875..220877,220953..220973,220995..220997, 221031..221033,221076..221093,221100..221102, 221109..221114) /gene="dkgB" /locus_tag="SF0192" /note="putative active site [active]" /db_xref="CDD:381365" misc_feature order(220521..220523,220536..220538,220611..220613, 220710..220712) /gene="dkgB" /locus_tag="SF0192" /note="catalytic tetrad [active]" /db_xref="CDD:381365" mobile_element complement(221250..222677) /mobile_element_type="insertion sequence:IS4" gene complement(221264..222610) /locus_tag="SF0193" /db_xref="GeneID:1024389" CDS complement(221264..222610) /locus_tag="SF0193" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_706148.1" /db_xref="GeneID:1024389" /translation="MFPDSFMHIGQALDLVSRYDSLRNPLTSLGDYLAPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMVLERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature complement(221522..222520) /locus_tag="SF0193" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene complement(222660..223574) /gene="yafC" /locus_tag="SF0194" /db_xref="GeneID:1024399" CDS complement(222660..223574) /gene="yafC" /locus_tag="SF0194" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_706149.1" /db_xref="GeneID:1024399" /translation="MKATSEELAIFVSVVESGSFSRAAEQLGQANSAVSRAVKKLEMK LGVSLLNRTTRQLSLTEEGERYFRRVQSILQEMAAAESEIMETRNTPRGLLRIDAATP VVLHFLMPLIKPFRERYPEVTLSLVSSETIINLIERKVDVAIRAGTLTDSSLRARPLF NSYRKIIASPDYISRYGKPETIDDLKQHVCLGFTEPASLNTWPIACSDGQLHEVKYGL SSNSGETLKQLCLSGNGIACLSDYMIDKEIARGELVELMADKVLPVEMPFSAVYYSDR AVSTRIRAFIDFLSEHVKTAPGGVMPIS" misc_feature complement(222696..223574) /gene="yafC" /locus_tag="SF0194" /note="DNA-binding transcriptional regulator YafC; Region: trans_reg_YafC; NF040888" /db_xref="CDD:468824" gene 223815..224615 /gene="yafD" /locus_tag="SF0195" /db_xref="GeneID:1024437" CDS 223815..224615 /gene="yafD" /locus_tag="SF0195" /note="Code: S; COG: COG3021" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706150.1" /db_xref="GeneID:1024437" /translation="MRKNTYAMRYVAGQPAERILPPGSFASIGQALPPGEPLSTEERI RILVWNIYKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFV LPQHPSGVMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNIHAVNF SLGVDVYSKQLLPIGDQIAHHSGPVIMAGDFNAWSRRRMNALYRFAREMSLRQVRFTD DQRRRAFGRPLDFVFYRGLNVSEASVLVTRASDHNPLLVEFSPGKPDK" misc_feature 223815..224603 /gene="yafD" /locus_tag="SF0195" /note="endonuclease/exonuclease/phosphatase family protein; Region: PRK05421" /db_xref="CDD:235454" gene 224843..225463 /gene="yafE" /locus_tag="SF0196" /db_xref="GeneID:1024387" CDS 224843..225463 /gene="yafE" /locus_tag="SF0196" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="biotin synthase" /protein_id="NP_706151.2" /db_xref="GeneID:1024387" /translation="MGCGAGHASFVAAQNVSAVVAYDLSAQMLDVVAQAAEARQLKNI TTRQGYAESLPFADNAFDIVISRYSAHHWHDVGAALREVNRILKPGGRMIVMDVMSPG HPVRDIWLQTVEALRDTSHVRNYASGEWLRLINEANLIVDNLITDKLPLEFCSWVARM RTPEALVDAIRIYQQSASTEVRTYFALQNDGSFTSDIIMVEAHKAA" misc_feature <224846..225175 /gene="yafE" /locus_tag="SF0196" /note="Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Region: UbiE; COG2226" /db_xref="CDD:441828" gene complement(225511..226857) /gene="mltD" /locus_tag="SF0197" /db_xref="GeneID:1024379" CDS complement(225511..226857) /gene="mltD" /locus_tag="SF0197" /note="Code: M; COG: COG0741" /codon_start=1 /transl_table=11 /product="membrane-bound lytic murein transglycosylase D" /protein_id="NP_706152.2" /db_xref="GeneID:1024379" /translation="MKAKAILLASVLLVGCQSTGNVQQHAQSLSAAGQGEAAKFTSQA RWMDDGTSIAPDGDLWAFIGDELKMGIPENDRIREQKQKYLRNKSYLHDVTLRAEPYM YWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQTRNY DARRDVVASTTAALNMMQRLNKMFDDDWLLTVAAYNSGEGRVMKAIKTNKARGKSTDF WSLPLPQETKQYVPKMLALSDILKNSKRYGVRLPTTDESRALARVHLSSPVEMAKVAD MAGISVSKLKTFNAGVKGSTLGASGPQYVMVPKKHADQLRESLASGEIAAVQSTLVAN NTPLNSRVYTVRSGDTLSSIASRLGVSTKDLQQWNKLRGSKLKPGQSLTIGAQRLANN SDSITYRVRKGDSLSSIAKRHGVNIKDVMRWNSDTANLQPGDKLTLFVKNNNMPDS" misc_feature complement(225514..226857) /gene="mltD" /locus_tag="SF0197" /note="membrane-bound lytic murein transglycosylase D; Provisional; Region: mltD; PRK10783" /db_xref="CDD:182727" gene complement(226929..227684) /gene="gloB" /locus_tag="SF0198" /db_xref="GeneID:1024396" CDS complement(226929..227684) /gene="gloB" /locus_tag="SF0198" /note="Code: R; COG: COG0491" /codon_start=1 /transl_table=11 /product="hydroxyacylglutathione hydrolase" /protein_id="NP_706153.1" /db_xref="GeneID:1024396" /translation="MNLNSIPAFDDNYIWVLNDEAGRCLIVDPGDAEPVLNAITANNW QPEAIFLTHHHHDHVGGVKELVEKFPQIVVYGPQETQDKGTTQVVKDGETAFVLGHEF SVITTPGHTLGHICYFSKPYLFCGDTLFSGGCGRLFEGTALQMYQSLKKLSALPDDTL VCCAHEYTLSNMKFALSIFPHDLSINDYYRKVKELRAKNQITLPVILKNERQINVFLR TEDIDLINGINEETLLQQPEERFAWLRSKKDRF" misc_feature complement(226932..227684) /gene="gloB" /locus_tag="SF0198" /note="hydroxyacylglutathione hydrolase; Provisional; Region: PRK10241" /db_xref="CDD:182327" gene 227715..228440 /gene="yafS" /locus_tag="SF0199" /db_xref="GeneID:1024409" CDS 227715..228440 /gene="yafS" /locus_tag="SF0199" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706154.1" /db_xref="GeneID:1024409" /translation="MMKPARVPQTVVAPDCWGDLPWGELYRKALERQLNPWFTKMYGF HLLKIGNLSAEINCEACAVSHQVNVSAQGMPVQVQADPLHLPFADKSVDICLLAHTLP WCTDPHRLLREADRVLIDDGWLVISGFNPISLMGLRKLVPVLRKTSPYNSRMFTLMRQ LDWLSLLNFEVLHASRFHVLPWNKHGGKLLNAHIPALGCLQLIVARKRTIPLTLNPMK QSKNKPRIRQAVGATRQCRKPQA" misc_feature <227946..228092 /gene="yafS" /locus_tag="SF0199" /note="Methyltransferase domain; Region: Methyltransf_11; pfam08241" /db_xref="CDD:462406" misc_feature <227967..228254 /gene="yafS" /locus_tag="SF0199" /note="Predicted SAM-depedendent methyltransferase [General function prediction only]; Region: COG4627" /db_xref="CDD:443666" gene complement(228437..229015) /gene="rnhA" /locus_tag="SF0201" /db_xref="GeneID:1024338" CDS complement(228437..229015) /gene="rnhA" /locus_tag="SF0201" /note="Code: L; COG: COG0328" /codon_start=1 /transl_table=11 /product="RNase HI" /protein_id="NP_706155.3" /db_xref="GeneID:1024338" /translation="MVSVSRTIWRVIAVLIAVIYVRLVVLQFDSITGSLPEMLKQVEI FTDGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEHCEV ILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKG HAGHPENERCDELARAAAMNPTLEDTGYQVEV" misc_feature complement(228452..228901) /gene="rnhA" /locus_tag="SF0201" /note="ribonuclease H; Reviewed; Region: rnhA; PRK00203" /db_xref="CDD:178927" misc_feature complement(order(228491..228493,228545..228547, 228695..228697,228761..228763,228770..228778, 228866..228877)) /gene="rnhA" /locus_tag="SF0201" /note="RNA/DNA hybrid binding site [nucleotide binding]; other site" /db_xref="CDD:260010" gene 228969..229700 /gene="dnaQ" /locus_tag="SF0200" /db_xref="GeneID:1024425" CDS 228969..229700 /gene="dnaQ" /locus_tag="SF0200" /note="Code: L; COG: COG0847" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit epsilon" /protein_id="NP_706156.2" /db_xref="GeneID:1024425" /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLT GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAF DIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSLDALCARYEIDNSKRT LHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRIVRQASKLRVVFAT DEELAAHEARLDLVQKKGGSCLWRA" misc_feature 228975..229697 /gene="dnaQ" /locus_tag="SF0200" /note="DNA polymerase III subunit epsilon; Provisional; Region: PRK05711" /db_xref="CDD:235574" misc_feature order(229002..229013,229017..229022,229149..229154, 229161..229166,229260..229265,229269..229277, 229398..229403,229443..229445,229452..229454, 229467..229469) /gene="dnaQ" /locus_tag="SF0200" /note="active site" /db_xref="CDD:99835" misc_feature order(229002..229013,229017..229022,229149..229154, 229161..229166,229260..229265,229269..229274, 229398..229403,229443..229445,229452..229454, 229467..229469) /gene="dnaQ" /locus_tag="SF0200" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99835" misc_feature order(229002..229004,229008..229010,229275..229277, 229452..229454,229467..229469) /gene="dnaQ" /locus_tag="SF0200" /note="catalytic site [active]" /db_xref="CDD:99835" gene 229833..229909 /locus_tag="SF4442" /db_xref="GeneID:3161847" tRNA 229833..229909 /locus_tag="SF4442" /product="tRNA-Asp" /codon_recognized="GAC" /db_xref="GeneID:3161847" gene complement(230040..231086) /gene="safA" /locus_tag="SF0202" /db_xref="GeneID:1027523" CDS complement(230040..231086) /gene="safA" /locus_tag="SF0202" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706157.1" /db_xref="GeneID:1027523" /translation="MEIFLSDPISAECPCGPDLEYDPEYLLLFTRAAPREEAQYGDFV STPENINWAELERDAHRLLMRSKDIRILVVLLRCRIQQAGARGLSEALTLLETLCSTY PDAIHPQLLATEDITAEDAAVARSNALAALLDHEGVMADIRGITLSNNAAMRLQVRDV ERSLSALRPADALAPESVRQQLADLEARGTLPLDAFRQAAETTERLQRHARETLNDQA PDFSRLTQLLALLPGAVQSTTPEILPQPQAEQPENATIVHTEQMQAEQIALPVHIAEE ISPMTGAEPRQIRDRNDALERLRVIRRWFEHSEPSSPTIPLLRQAERLVGKRVSEVIN EIPVELLEKWDALE" misc_feature complement(230046..231065) /gene="safA" /locus_tag="SF0202" /note="Type VI protein secretion system component TssA1/VasJ/EvfE, contains ImpA_N domain [Intracellular trafficking, secretion, and vesicular transport]; Region: TssA1; COG3515" /db_xref="CDD:442737" gene complement(231341..231659) /gene="safB" /locus_tag="SF0203" /pseudogene="unknown" /db_xref="GeneID:1025966" gene complement(231656..233539) /gene="safC" /locus_tag="SF0204" /db_xref="GeneID:1024401" CDS complement(231656..233539) /gene="safC" /locus_tag="SF0204" /note="Code: S; COG: COG3519" /codon_start=1 /transl_table=11 /product="outer membrane usher protein" /protein_id="NP_706159.1" /db_xref="GeneID:1024401" /translation="MDPRLLEYYNRELSYLRETGAEFAARHPKVAARLGMQGTDIADP YVERMVEAFSFLTARTQLKIDAEFPRFTQRLLEVVSPNYVTPTPSMSVAQLHPDTEEG DLAKGFTVPRDTAFFSAIPEGESTACQFRSSQDVTLWPLAIEEARLTAAPPDMPALHR YLPANIHVAGALRITLRTFGELTFSQLAGLDRLPFYLCGEERTASHLLELLHTSAIAP LAGIPGHFDGALDVNLQQPVMYEGLEPDQGLLPLAWNVFHGHNLLHEYFACPERFYFF TPTGLSAGLQKIDGGVAEIVILLNRLPPDWLIHQTNAAQFSLFCTPVINLFPRVTARI DVTHSTTEQHLVVDRTHPLDYEVFSVQEVEGLETDTTRKMAFRPLYHTRNNDEGNHGR YFSLRREPRRLSENARRYGTRTPYTGSEVFLSLVDQYEAPYPENLRHITITAMVTNRD LPCLIARNGRDDLTVDAAIPVAGVGLIRPPRSPQPPMAEREMAWRLIRQLSFNYLPLA DLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVS CELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGKIMTWPVRAGQR GSV" misc_feature complement(231668..233539) /gene="safC" /locus_tag="SF0204" /note="Type VI secretion system, TssF; Region: T6SS_TssF; pfam05947" /db_xref="CDD:428685" gene complement(233555..234049) /locus_tag="SF0205" /db_xref="GeneID:1024373" CDS complement(233555..234049) /locus_tag="SF0205" /note="Code: S; COG: COG3518" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706160.2" /db_xref="GeneID:1024373" /translation="MSASRQRPGNHLLPTLFDRLCDDAPNQKRDHGISVSPVQIKEII RRDLSFLLNTVSHEDDIDAARYPYAAASVLNYGLPPLAGSFLYEHKWDDIRRAILRTI TRFEPRLKASTLQIIPLQDERRQSGHNTLQFEIRGEILTQPYPTAFRVRSALDMEQSR ITFF" misc_feature complement(233579..234040) /locus_tag="SF0205" /note="Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]; Region: COG3518" /db_xref="CDD:442740" gene complement(234046..234244) /locus_tag="SF0206" /pseudogene="unknown" /db_xref="GeneID:1024342" gene complement(234863..235777) /locus_tag="SF0208" /pseudogene="unknown" /db_xref="GeneID:1024333" mobile_element 235784..237114 /mobile_element_type="insertion sequence:IS2" gene 235830..236240 /locus_tag="SF0209" /db_xref="GeneID:1024408" CDS 235830..236240 /locus_tag="SF0209" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_706164.1" /db_xref="GeneID:1024408" /translation="MIVLILVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 235875..236237 /locus_tag="SF0209" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 236198..237103 /locus_tag="SF0210" /db_xref="GeneID:1024393" CDS 236198..237103 /locus_tag="SF0210" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_706165.1" /db_xref="GeneID:1024393" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature 236198..237100 /locus_tag="SF0210" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(237160..237447) /locus_tag="SF0211" /db_xref="GeneID:1024430" CDS complement(237160..237447) /locus_tag="SF0211" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706166.1" /db_xref="GeneID:1024430" /translation="MDEEYRKDLQLWFGLTHASFCVMPRVFMEAMPPEWQEKMAQLLF EYSDTIKTDVCGVHSCFVTAKDGNNRFMRMPEDILNYRHPRREFIESFLKK" mobile_element complement(237453..238702) /mobile_element_type="insertion sequence:IS911" gene complement(237461..238666) /locus_tag="SF0214" /pseudogene="unknown" /db_xref="GeneID:1024397" gene 238841..239743 /locus_tag="SF0215" /db_xref="GeneID:1024341" CDS 238841..239743 /locus_tag="SF0215" /codon_start=1 /transl_table=11 /product="terminase large subunit" /protein_id="NP_706170.1" /db_xref="GeneID:1024341" /translation="MWFDEEPPYSIYGEGLTRTNKYGQFSILTFTPLMGMSDVVTKFL KNPSKSQKVVNMTIYDAEHYTDEQKEQIIASYPEHEREARARGIPTMGSGRIFQIPEE TIKCQPFECPDHFYVIGGMDFGWDHPQAQVQLWWDKEADTIYVSRVWKAKEKTAVQAW GAVKSWAHKVPTAWPHDGNQHEKGGGEQLKGQYADAGFMMLQEHATWPDGGNAVEPGI TELRDMMLDGRFKVFNTCEPFFEEFRLYHRDENGKIVKLNDDVLSAVRYAYMMRRFAK MMRDIKKPKEKKIPAPIRPIARRT" misc_feature <238844..239725 /locus_tag="SF0215" /note="Phage terminase large (ATPase) subunit and inactivated derivatives [Mobilome: prophages, transposons]; Region: COG5565" /db_xref="CDD:444307" gene 239744..241909 /locus_tag="SF0216" /db_xref="GeneID:1024354" CDS 239744..241909 /locus_tag="SF0216" /codon_start=1 /transl_table=11 /product="packaging glycoprotein" /protein_id="NP_706171.2" /db_xref="GeneID:1024354" /translation="MADENRLNSILCKFDADWMASDEARTEATNDLYFSRVSQWDDWL SNYTTLQYRGQFDVVRPEVRKLVAEMRRNPVDVLFRPKDGANPDAADVLMGMYRTDMR HNTAKIAVNVGVREQIESGVGAWRLVTQYEDNDPTSNNQVIRRLPIHEACSHVIWDAN SKQMDKSDAKHCTVINALSRNGWKEFAEDYGIDPDTLPSFQNPNDTWLFPWVSNDVVY VAEYYEVEEEKEKVFIYRDPLTGEPVSYYQQDIKDVIDDLANRGFIKVAERKVKRRRV YKSIITCTQILKDREKIAGEHIPIVPVYGEWSFAGDKECYEGVVRLTKDGQRLRNMIM SFNADIVARSPKKKPTFFPEQIEGYEYMYGGNDDYPYYLQNRTDENGNDLPIGPISYM ENPEVPQANAYMLEAATNAVKEVASLGVDAQAANGQVAFDTVNQLNMRADLETYVFQD NLATAMRRDGEIYASMVNDIYDVPRHVTLTLEDGSEKDVQLYAQVVDYQSGNVVTLND IRGRYECYTDVGPSFQSMKEQNRAEIQELLTKVPQGTPEFQMLMLQYFTLLDGKGVEM MREYANKQLVMMGLKKPETPEEMEMVQQAQQQPQQPSAEQIQAQGILLQGQAELLKAE NQQAQIQVEAAKVEAQNQLNAAKIAEIFNNMDLDKQAELREYLRLVGQFQQQRSKDAR ANAELLLKDADQTHSQRMDFANLMRQVQIPSGGVAETPQ" misc_feature 239780..241780 /locus_tag="SF0216" /note="Phage P22-like portal protein; Region: P22_portal; pfam16510" /db_xref="CDD:293119" gene 241923..242834 /locus_tag="SF0217" /db_xref="GeneID:1024346" CDS 241923..242834 /locus_tag="SF0217" /codon_start=1 /transl_table=11 /product="scaffolding protein" /protein_id="NP_706172.1" /db_xref="GeneID:1024346" /translation="MDQTTDIQASEELTLPGNHAAASADGLVVDNANDSAGQEEGFEI VRKDDEKPKQDPATNAEFARRRIERKRQRELEQQMEAVKRGELPEHLRVNPELPKQPD PNDYLSEDALAKYDYDQSRALAAFQQANSEWQIKAMDARSQAVAEQGRKTQEFTQQSA QYVEAARKHYEAAEKLNIPDYQEKEDAFMQLVPPAVGADIMRLFPEKSAALMYHLGAN PEKTRQLLAMDGQSALIELTRLSERLTLKPRAKPVSEAPLPDEPIQGHAVAANISAIE KQMEAAANKGDVETYRKLKAQLNKGIR" misc_feature 241923..242828 /locus_tag="SF0217" /note="Bacteriophage, scaffolding protein; Region: Phage-scaffold; pfam09306" /db_xref="CDD:286399" gene 242834..244129 /locus_tag="SF0218" /db_xref="GeneID:1024344" CDS 242834..244129 /locus_tag="SF0218" /codon_start=1 /transl_table=11 /product="coat protein" /protein_id="NP_706173.1" /db_xref="GeneID:1024344" /translation="MALNEGQLVTYALDEIIGTVQNLTPMASKVTKYPPPAESMQRSS NTVWMPVEQEAPTQTGWDLTGNATGILELSVKCNMGDPDNDFFELRADDLRDERSYRR RIQASAKKLANNIESAIAKQATEMGSLVVHDTRAIGPSTGLPGWDFVSDAERLMFSRE LNRDMGISYFLNPDDYRKAGRNLVDGDIFGRVPEEAYRNGTIQRQIAGFDEILRSPKL PAVTKSTATGVTVSGAQKFKPQAYTLDTDGNKENVDNRVATVTVSSTTGFKRGDKISF IGVKFLSQMAKNVLTDDATFSITRVIDGTHIEITPKPIALDDASLTKEEKAYANVNTS LADTTPVNVLNVATTTANVFWADDSIRLLSQPIPVTHELFAGMKTSSFSIPGIGVNGI FATQGDINTLSGKCRIAVWYSACAVRPEAIGVGLPNQTA" misc_feature 242834..244126 /locus_tag="SF0218" /note="P22 coat protein - gene protein 5; Region: P22_CoatProtein; cl22542" /db_xref="CDD:473967" gene 244174..244404 /locus_tag="SF0219" /db_xref="GeneID:1024336" CDS 244174..244404 /locus_tag="SF0219" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706174.2" /db_xref="GeneID:1024336" /translation="MTHMIFRHGDMKKWKGVGYDFEIVKAEELQEYLDAGWFSHPDDL LKDVAEPEPEEKQRKKPGRKPKAAADEPDNEG" gene 244382..244882 /locus_tag="SF0220" /db_xref="GeneID:1024376" CDS 244382..244882 /locus_tag="SF0220" /codon_start=1 /transl_table=11 /product="DNA stabilization protein" /protein_id="NP_706175.1" /db_xref="GeneID:1024376" /translation="MNLTTKGDLVLAALRKLGVASNATLTDVEPQSMEDGVNDLEMMM AEWLGGDASPGINVGYIFADADVAPDPGDEHGLSNNAINAVIFNLACRIAPDYALEAS AKLITTARYGKERLVKLSAMDRAKAAKCKSGYPNRMPVGSGNQLAKWNGWNYFHRKEP CDNGSE" misc_feature 244394..244849 /locus_tag="SF0220" /note="P22 tail accessory factor; Region: P22_Tail-4; pfam11650" /db_xref="CDD:402995" gene 244882..246300 /locus_tag="SF0221" /db_xref="GeneID:1025967" CDS 244882..246300 /locus_tag="SF0221" /codon_start=1 /transl_table=11 /product="packaged DNA stabilization protein" /protein_id="NP_706176.1" /db_xref="GeneID:1025967" /translation="MPIQQLPLMKGVGKDFRNADYIDYLPVNMLATPKEILNSSGYLR SFPGIAKRSDVNGVSRGVEYNMAQNAVYRVCGGKLYKGESEVGDVAGSGRVSMAHGRT SQAVGVNGQLVEYRYDGTVKTVSNWPTDSGFTQYELGSVRDITRLRGRYAWSKDGTDS WFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGATTVG AALYVAQPSLMVQKGIAGTYCKTPFADSYAFISNPATGAPSVYIIDSGQVSPIASASI EKILRSYTADELADGVMESLRFDAHELLIIHLPRHVLVYDASSIANGPQWCVLKTGLY DDVYRAIDFVYEGNQITCGDKLESVTGKLQFDISSQYDKQQEHLLFTPLFKADNARVF DLEVESSTGVAQYADRLFLSATTDCINYGREQMIEQNEPFVYDKRVLWKRVGRIRKNV GFKLRVITKSPVTLSGAQIRIE" misc_feature 244891..246297 /locus_tag="SF0221" /note="Phage stabilization protein; Region: Phage_stabilize; pfam11134" /db_xref="CDD:288037" gene 246300..247148 /locus_tag="SF0222" /db_xref="GeneID:1024427" CDS 246300..247148 /locus_tag="SF0222" /codon_start=1 /transl_table=11 /product="packaged DNA stabilization protein" /protein_id="NP_706177.1" /db_xref="GeneID:1024427" /translation="MADSNLNVPVIIQATRLDTSVLPRNIFSQSYLLYVIAQGTDVGN VANKANEAGQGAYDAQVRNDEQDVILADHEQRISAAEATLVNHEERIRQAESTLQDHE TRIAQNESDISSLDTRVQSLESQVSDHETRIDALEYATTRKKSEVVYSGVSVTIPTAP TNLVSLLKTLTPSSGSLAPFFDTVNNKMVVFNENKTLLFKLSIVGTWPSGTANRSMQL TFSGSVPDTLVSSRNAATTTDNILLATFFSVDKDGFLATNGSTLTIQSNGAAFTATTI KIIAEQ" misc_feature 246507..>246740 /locus_tag="SF0222" /note="Predicted nucleic acid-binding protein DR0291, contains C4-type Zn-ribbon domain [General function prediction only]; Region: DR0291; COG1579" /db_xref="CDD:441187" misc_feature 246690..247145 /locus_tag="SF0222" /note="Sf6-type phage tail needle knob or tip of some Caudovirales; Region: Phage_tail_NK; pfam16532" /db_xref="CDD:406836" gene 247148..247603 /locus_tag="SF0223" /db_xref="GeneID:1024359" CDS 247148..247603 /locus_tag="SF0223" /codon_start=1 /transl_table=11 /product="head assembly protein" /protein_id="NP_706178.2" /db_xref="GeneID:1024359" /translation="MITFKPTRNIDLIEAVGNHPDIIAGSNNGDGYDYKPECRYFEVN VHGQFGGIVYYQEIQPLTLDCHAMYLPEIRGFSKEIGLAFWRYILTNTTVQCVTSFAA RKFRHGQMYCAMIGLKRVGTIKKYFKGVDDVTFYSATREELIDFLNHGR" misc_feature 247148..247600 /locus_tag="SF0223" /note="head assembly protein; Region: PHA00771" /db_xref="CDD:164842" gene 247606..248298 /locus_tag="SF0224" /db_xref="GeneID:1024388" CDS 247606..248298 /locus_tag="SF0224" /codon_start=1 /transl_table=11 /product="DNA transfer protein" /protein_id="NP_706179.1" /db_xref="GeneID:1024388" /translation="MLYAFKLGRKLRGEEPYCPEKGGKGGSSDKSAKYAAEAQKYAAD LQNQQWQTIMKNLAPFTPLAEQYVNQLQNLSSLEGQGQALNQYYNSKQYKDLAGQARY QSLAAAEATGGLGSTATSNQLATIAPTLGQSWLSNQMSNYNNLANVGLGALQGQANAG QTYANNMSSIAQQSAALAAANANKPSSLQTAISGGTSGAIAGAGLASLLGTSTPWGAG IGAGIGLLGSLF" gene 248308..249639 /locus_tag="SF0225" /db_xref="GeneID:1024340" CDS 248308..249639 /locus_tag="SF0225" /codon_start=1 /transl_table=11 /product="prophage DNA injection protein" /protein_id="NP_706180.1" /db_xref="GeneID:1024340" /translation="MATWQGTNGGLLAGIGGVNSNAPSVNDIGNTLQLIRQNNDIERS GANNVGLTALQGLSGIAGVFQQEKQAQRQKEFQQAYANAYASGDRGALRQLATQYPDQ IESVRKGMGFIDEEQRNSIGTLAAGARLASSSPEAMQSWLQNNAGELARVGVNPHDVA QMYQQNPRQFGEFVDHLGMNSLGPEKYFDLQDKMQGRQVTMRGQDLDSQTAARNQAIT MRGQDIQANLGQQRINLDAETNRINNENKRLDRMLSAETNDLKRQEIQSRIAANNQQL QQKQQALNDGYKDGINTLTTSMFTLNDIVSSPSLKSITGLRGVIPNVPGSQAADTQAR LDTFKSQAYLTAVQAMRGMGALSDAEGKKLDQAVGSLQNSQSEESFRRNAGVILNTLN QKRNEAVGKYVQQNGIKRVEAPQASIDYLKQHPELSIDFINRYGYLPSLGQ" misc_feature 248335..248982 /locus_tag="SF0225" /note="DNA/protein translocase of phage P22 injectosome; Region: Inj_translocase; pfam16928" /db_xref="CDD:435660" gene 249640..251370 /locus_tag="SF0226" /db_xref="GeneID:1024360" CDS 249640..251370 /locus_tag="SF0226" /codon_start=1 /transl_table=11 /product="DNA transfer protein" /protein_id="NP_706181.2" /db_xref="GeneID:1024360" /translation="MANYRDLLEQAGARYGVPEGLMTALGAKESSYNPAAVSSAGAVG LTQVMPGTWRDMGYTDEQMQNPEYQADAGARYLAKMYQQFGNWRDSLQAYHDGPGNVM KAKRGEYTPGPEGRGYVDDRFAQWAGDPVTDSTVEQRATSAKVHPQQDPNNPFAQLEV QSSEQVSASGVQSDPNNPFAQIEQQAASQQPPQPVSSVAPKPVQQQTVNQANNAPTRE EPSLMQQAGDWLTGGQSAGQIAEQAGRGLVNIPFDVLQGGASLINAISQGLGGPKVLD DVYRPVDRPTDPYAQAGESIGGYLVPGAGVAGNMVIGSLADAANQRGDFAENAAINAG LSIATHGLINGVTRGVRGASNIISGNKTSAQRATTAPTETSPFSGDAAAATNPAVHAA EARVAQGVPMTPATKNPEEVVRTVAAQKRPNLASSLDELDINPQAEVLESAERLNVDS LLPSHFSGNEQYKAVEQAIKSRAGSALQVQENEAIRQLAQGAGEIIDRVSGAKDALGM SDKFIDTVNGRMSALMKRSDQLYRNVEKAMPAGAKIDAPSTRSMLKQVAEDLGGMKNL DPIEKRVEVA" misc_feature 249694..249996 /locus_tag="SF0226" /note="lytic transglycosylase(LT)-like domain; Region: LT-like; cd00254" /db_xref="CDD:381594" misc_feature order(249724..249726,249778..249786,249793..249795, 249865..249867,249919..249924) /locus_tag="SF0226" /note="sugar binding site [chemical binding]; other site" /db_xref="CDD:381594" mobile_element 251442..252747 /mobile_element_type="insertion sequence:IS629" gene 251496..251822 /locus_tag="SF0227" /db_xref="GeneID:1024332" CDS 251496..251822 /locus_tag="SF0227" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_706182.1" /db_xref="GeneID:1024332" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature 251499..251786 /locus_tag="SF0227" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 251822..252705 /locus_tag="SF0228" /pseudogene="unknown" /db_xref="GeneID:1024362" gene complement(252756..253094) /gene="psiF" /locus_tag="SF0229" /db_xref="GeneID:1024320" CDS complement(252756..253094) /gene="psiF" /locus_tag="SF0229" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706184.1" /db_xref="GeneID:1024320" /translation="MKRDGAMKITFLVTLLFGLVFLTTVGAAERTLTPQQQRMTSCNQ QATAQALKGDARKTYMSDCLKNSKSAPGEKSLTPQQQKMRECNNQATQQALKGDDRNK FMSACLKKAA" misc_feature complement(252759..253076) /gene="psiF" /locus_tag="SF0229" /note="phosphate starvation-inducible protein PsiF; Region: PRK11505" /db_xref="CDD:183165" gene complement(253195..254679) /gene="phoA" /locus_tag="SF0230" /db_xref="GeneID:1024334" CDS complement(253195..254679) /gene="phoA" /locus_tag="SF0230" /note="Code: P; COG: COG1785" /codon_start=1 /transl_table=11 /product="alkaline phosphatase" /protein_id="NP_706185.1" /db_xref="GeneID:1024334" /translation="MSRPRLIVALFLFFNVFVHGENKVKQSTIALALLPLLFTPVTKA RTPEMPVLENRAAQGDITAPGGARRLTGDQTAALRDSLSDKPAKNIILLIGDGMGDSE ITAARNYAEGAGGFFKGIDALPLTGQYTHYALNKKTGKPDYVTDSAASATAWSTDVKT YNGALGVDIHEKDHPTILEMAKAAGLATGNVSTAELQDATPAALVAHVTSRKCYGPSA TSEKCPGNALEKGGKGSITEQLLNARADVTLGGGAKTFAETATAGEWQGKTLREQAQA RGYQLVNDAASLNSVTEANQQKPLLGLFADGNMPVRWLGPKATYHGNIDKPAVTYTPN PQRNDSVPTLAQMTDKAIELLSKNEKGFFLQVEGASIDKQDHAANPCGQIGETVDLDE AVQRALEFAKKEGNTLVIVTADHAHASQVVAPDTKAPGLTQALNTKDGAVMVMSYGNS EEDSQEHTGSQLRIAAYGPHAANVVGLTDQTDLFYTMKAALGLK" misc_feature complement(253198..254613) /gene="phoA" /locus_tag="SF0230" /note="alkaline phosphatase; Provisional; Region: PRK10518" /db_xref="CDD:236706" gene complement(254711..254971) /gene="yaiB" /locus_tag="SF0231" /db_xref="GeneID:1025969" CDS complement(254711..254971) /gene="yaiB" /locus_tag="SF0231" /codon_start=1 /transl_table=11 /product="anti-RssB factor" /protein_id="NP_706186.1" /db_xref="GeneID:1025969" /translation="MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQND QQRLIDQVEGALYEVKPDASIPDDDTELLRDYVKKLLKHPCQ" misc_feature complement(254714..254971) /gene="yaiB" /locus_tag="SF0231" /note="anti-adapter protein IraP; Region: PRK10244" /db_xref="CDD:236666" gene complement(255153..255356) /locus_tag="SF0230a" /db_xref="GeneID:16608303" CDS complement(255153..255356) /locus_tag="SF0230a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439229.1" /db_xref="GeneID:16608303" /translation="MLQSSADKACNVLVKKVRYLKDVRKITKMMNGKLIYSWLKWQCG EFFSLNYKLTKRIYFIAFIYNKG" gene 255434..256528 /gene="ddl" /locus_tag="SF0232" /db_xref="GeneID:1024369" CDS 255434..256528 /gene="ddl" /locus_tag="SF0232" /note="Code: M; COG: COG1181" /codon_start=1 /transl_table=11 /product="D-alanyl-alanine synthetase A" /protein_id="NP_706187.1" /db_xref="GeneID:1024369" /translation="MEKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGID KQGQWHVSDASNYLLNADDPAHIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVI FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFIT LTRANRHNISFAEVESKLGLPLFVKPANQGSSVGVSKVTSEEQYAIAVDLAFEFDHKV IVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAP EINDKIRAIAVQAYQTLGCAGMARVDVFLTPENEVVINEINTLPGFTNISMYPKLWQA SGLGYTDLITRLIELALERHAADNALKTTM" misc_feature 255434..256489 /gene="ddl" /locus_tag="SF0232" /note="D-alanine--D-alanine ligase; Region: ddl; PRK01966" /db_xref="CDD:234993" gene complement(256552..256791) /locus_tag="SF0233" /db_xref="GeneID:1024363" CDS complement(256552..256791) /locus_tag="SF0233" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706188.2" /db_xref="GeneID:1024363" /translation="MLFFVNGAAMNLPVKIRRDWHYYAFAIGLIFILNGVVGVLGFEA KGWQTYAVGLVTWVISFWLAGLIIRRRDEETENAQ" misc_feature complement(256555..256764) /locus_tag="SF0233" /note="Protein of unknown function (DUF2754); Region: DUF2754; pfam10953" /db_xref="CDD:402504" gene 257024..257332 /locus_tag="SF0234" /db_xref="GeneID:1027522" CDS 257024..257332 /locus_tag="SF0234" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706189.1" /db_xref="GeneID:1027522" /translation="MADFTLSKSLFSGKYRNASSTPGNIAYALFVLFCFWAGAQLLNL LVHAPGVYERLMQVQETGRPRVEIGLGVGTIFGLIPFLAGCLIFAVVALWLHWRHRRQ " misc_feature 257024..257326 /locus_tag="SF0234" /note="Protein of unknown function (DUF2755); Region: DUF2755; pfam10954" /db_xref="CDD:402505" gene complement(257391..258485) /gene="yaiW" /locus_tag="SF0235" /db_xref="GeneID:1024292" CDS complement(257391..258485) /gene="yaiW" /locus_tag="SF0235" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706190.1" /db_xref="GeneID:1024292" /translation="MSRVNHLSSLSLLAVLVLAGCSSQAPQPLKKGEKAIDVASVVRQ KMPASVKDRDAWAKDLATTFESQGLAPTLENVYSVLAVAQQESNYQADPAVPGLSKIA WQEIDRRAERMHIPAFLVHTALKIKSPNGKSYSERLDSVRTEKQLSAIFDDLISMVPM GQTLFGSLNPVRTGGPMQVSIAFAEQHTKGYPWKMDGTVRQEVFSRRGGLWFGTYHLL NYPASYSAPIYRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYDSKEPGKTE LATRKLAGKLGMSDSEIRRQLEKGDSFSFEETALYKKVYQLAEAKTGKSLPREMLPGI QLESPKITRNLTTAWFAKRVDERRARCMKQ" misc_feature complement(257397..258341) /gene="yaiW" /locus_tag="SF0235" /note="Protein of unknown function (DUF1615); Region: DUF1615; pfam07759" /db_xref="CDD:429641" gene complement(258498..259718) /gene="sbmA" /locus_tag="SF0236" /db_xref="GeneID:1024311" CDS complement(258498..259718) /gene="sbmA" /locus_tag="SF0236" /note="Code: I; COG: COG1133" /codon_start=1 /transl_table=11 /product="microcin B17 transporter" /protein_id="NP_706191.2" /db_xref="GeneID:1024311" /translation="MFKSFFPKPGTFFLSAFVWALIAVIFWQAGGGDWVARITGASGQ IPISAARFWSLDFLIFYAYYIVCVGLFAFFWFIYSPHRWQYWSILGTALIIFVTWFLV EVGVAVNAWYAPFYDLIQTALSSPHKVTIEQFYREVGVFLGIALIAVVISVLNNFFVS HYVFRWRTAMNEYYMANWQQLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIA FLPVLVTLSAHVPELPIIGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE AAYRKELVYGEDDATRATPPTVRELFSAVRKNYFRLYFHYMYFNIARILYLQVDNVFG LFLLFPSIVAGTITLGLMTQITNVFGQVRGAFQYLINSWTTLVELMSIYKRLRSFEHE LDGDKIQEVTHTLS" misc_feature complement(258501..259718) /gene="sbmA" /locus_tag="SF0236" /note="peptide antibiotic transporter SbmA; Region: PRK11098" /db_xref="CDD:182960" gene 260070..261227 /gene="yaiH" /locus_tag="SF0237" /db_xref="GeneID:1024317" CDS 260070..261227 /gene="yaiH" /locus_tag="SF0237" /note="Code: M; COG: COG1680" /codon_start=1 /transl_table=11 /product="beta-lactam binding protein AmpH" /protein_id="NP_706192.1" /db_xref="GeneID:1024317" /translation="MKRSLLFSAVLCAASLTSVHAAQPITEPEFASDIVDRYADHIFY GSGATGMALVVIDGNQRVFRSYGETRPGNNVRPQLDSVVRIASLTKLMTSEMLVKLLD QGTVKLNDPLSKYAPPGARVPTYNGTPITLVNLATHTSALPREQPGGAAHRPVFVWPT REQRWKYLSTAKLKAAPGSQAAYSNLAFDLLADALANASGKPYTQLFEEQITHPLGMK DTTYTPSPDQCRRLMVAERGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYQR SNQADRMQTLIYQRAQFTKVIGMDVPGKADALGLGWVYMAPKEGRPRIIQKTGGGGGF ITYMAMIPQKNIGAFVVVTRSPLTRFKNMSDGINDLVTELSGNKPLVIPAS" misc_feature 260070..261203 /gene="yaiH" /locus_tag="SF0237" /note="beta-lactam binding protein AmpH; Provisional; Region: PRK10662" /db_xref="CDD:236732" gene complement(261228..261776) /gene="yaiV" /locus_tag="SF0238" /db_xref="GeneID:1025745" CDS complement(261228..261776) /gene="yaiV" /locus_tag="SF0238" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706193.1" /db_xref="GeneID:1025745" /translation="MPVKDLTGITAKDAQMLSVVKPLQEFGKLDKCLSRYGTRFEFNN EKQVIFSSDVNNEDTFVILEGVISLRREENVLIGITQAPYIMGLADGLMKNDIPYKLI SEGNCTGYHLPAKQTRATLLSMIDWNEELRSRIGVMNYIHQRTRISRSVVAEVLAALR KGGYIEMNKGKLVAINRLPSEY" misc_feature complement(261231..261731) /gene="yaiV" /locus_tag="SF0238" /note="hydrogen peroxide resistance inhibitor IprA; Region: PRK11832" /db_xref="CDD:183332" gene complement(261819..262347) /gene="yaiU" /locus_tag="SF0239" /pseudo /db_xref="GeneID:1024351" misc_feature complement(261819..262347) /gene="yaiU" /locus_tag="SF0239" /note="Similar to Escherichia coli K12 flagellin structural protein gi: 1786572 (468 aa). BLAST with identity of 98% in 176 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(262366..263178) /locus_tag="SF0240" /db_xref="GeneID:1024371" CDS complement(262366..263178) /locus_tag="SF0240" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706194.1" /db_xref="GeneID:1024371" /translation="MLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGY RKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNP DAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWR RNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRER IKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSEQMSPTEYENQYYQRLGSV" misc_feature complement(262399..>263175) /locus_tag="SF0240" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" mobile_element complement(263409..264672) /mobile_element_type="insertion sequence:IS600" gene complement(263452..264270) /locus_tag="SF0241" /db_xref="GeneID:1024355" CDS complement(263452..264270) /locus_tag="SF0241" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706195.1" /db_xref="GeneID:1024355" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(263479..>264270) /locus_tag="SF0241" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(264306..264608) /locus_tag="SF0242" /db_xref="GeneID:1027525" CDS complement(264306..264608) /locus_tag="SF0242" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706196.1" /db_xref="GeneID:1027525" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(264336..264608) /locus_tag="SF0242" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(264841..265410) /locus_tag="SF0243" /db_xref="GeneID:1024290" CDS complement(264841..265410) /locus_tag="SF0243" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706197.1" /db_xref="GeneID:1024290" /translation="MITDVWKYRGKSTDCADRADDYYHDRLALTVDNSTIDDNYEHYT YNGTYNNAADTHVVDVYNIGTAITLDQEVDLSITNNSHVAGITLTQGYEWEDIDDNTV STGVNSSEVFNNTITVKDSTVTSGSWTDEGTTGWFGNTGNASDYSGKSNFVTVDTDGD GVADSTIASWDDVALAVVAHPNVDNAMQT" mobile_element complement(265374..266681) /note="partial" /mobile_element_type="insertion sequence:IS2" gene complement(265385..266290) /locus_tag="SF0244" /db_xref="GeneID:1024390" CDS complement(265385..266290) /locus_tag="SF0244" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_706198.1" /db_xref="GeneID:1024390" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(265388..266290) /locus_tag="SF0244" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(266248..266658) /locus_tag="SF0245" /db_xref="GeneID:1024319" CDS complement(266248..266658) /locus_tag="SF0245" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_706199.3" /db_xref="GeneID:1024319" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(266251..266613) /locus_tag="SF0245" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" mobile_element 266682..267449 /mobile_element_type="insertion sequence:IS1" gene 266737..267012 /gene="insA" /locus_tag="SF0246" /db_xref="GeneID:1024325" CDS 266737..267012 /gene="insA" /locus_tag="SF0246" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706200.1" /db_xref="GeneID:1024325" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 266758..>267009 /gene="insA" /locus_tag="SF0246" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 267039..267434 /gene="insB" /locus_tag="SF0247" /db_xref="GeneID:1023584" CDS 267039..267434 /gene="insB" /locus_tag="SF0247" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706201.1" /db_xref="GeneID:1023584" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 267042..267431 /gene="insB" /locus_tag="SF0247" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(267479..267850) /locus_tag="SF0248" /db_xref="GeneID:1024306" CDS complement(267479..267850) /locus_tag="SF0248" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706202.1" /db_xref="GeneID:1024306" /translation="MHSWKKKLVVSQLALACTLAITSQANAATNDISGQTYNTFHHYN DATYADDVYYDGYVGWNNYAADSYYNGDIYPVINNATVNGVISTYYLDDGISTNTNAN SLTIKNSTIHGMIYSECMTTD" gene 268341..269348 /gene="hemB" /locus_tag="SF0249" /db_xref="GeneID:1024339" CDS 268341..269348 /gene="hemB" /locus_tag="SF0249" /note="Code: H; COG: COG0113" /codon_start=1 /transl_table=11 /product="delta-aminolevulinic acid dehydratase" /protein_id="NP_706203.1" /db_xref="GeneID:1024339" /translation="MHLNSTNIRQTMTDLIQRPRRLRKSPALRAMFEETTLSLNDLVL PIFVEEEIDDYKAVEAMPGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSD AWREDGLVARMSRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLENLGK QAVVAAAAGADFIAPSAAMDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREA AGSALKGDRKSYQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDIVRELRERTEL PIGAYQVSGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKKIL R" misc_feature 268374..269330 /gene="hemB" /locus_tag="SF0249" /note="porphobilinogen synthase; Region: PRK09283" /db_xref="CDD:236450" misc_feature order(268398..268400,268407..268412,268443..268445, 268515..268517,268524..268526,268791..268796, 268875..268880,268965..268973,269028..269030, 269037..269039,269055..269057,269064..269069, 269121..269135,269205..269207,269259..269261, 269271..269273,269280..269282) /gene="hemB" /locus_tag="SF0249" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238226" misc_feature order(268725..268727,268731..268733,268737..268739, 268761..268763,268866..268868,268956..268958, 268974..268976,268983..268988,269001..269003, 269019..269021,269031..269033,269112..269114, 269181..269183,269190..269192,269307..269309) /gene="hemB" /locus_tag="SF0249" /note="active site" /db_xref="CDD:238226" misc_feature order(268956..268958,269112..269114) /gene="hemB" /locus_tag="SF0249" /note="Schiff base residues [active]" /db_xref="CDD:238226" gene complement(269454..270305) /gene="tauD" /locus_tag="SF0250" /db_xref="GeneID:1024318" CDS complement(269454..270305) /gene="tauD" /locus_tag="SF0250" /note="Code: Q; COG: COG2175" /codon_start=1 /transl_table=11 /product="taurine dioxygenase" /protein_id="NP_706204.1" /db_xref="GeneID:1024318" /translation="MSERLSITPLGPYIGAQISGADLTRPLSDNQFEQLYHAVLRHQV VFLRDQAITPQQQRALAQRFGELHIHPVYPHAEGVDEIIVLDTHNDNPPDNDNWHTDV TFIETPPAGAILAAKELPSTGGDTLWTSGIAAYEALSVPFRQLLSWLRAEHDFRKSFP EYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPVSGKQALFVNEGFTTRIVDVSEKES EALLGFLFAHITKPEFQVRWRWQPNDIAIWDNRVTQHYANADYLPQRRIMHRATILGD KPFYRAG" misc_feature complement(269469..270299) /gene="tauD" /locus_tag="SF0250" /note="taurine dioxygenase; Reviewed; Region: tauD; PRK09553" /db_xref="CDD:181947" misc_feature complement(order(269541..269543,269928..269930, 270003..270005,270009..270011)) /gene="tauD" /locus_tag="SF0250" /note="active site" /db_xref="CDD:238154" misc_feature complement(order(269541..269543,270003..270005, 270009..270011)) /gene="tauD" /locus_tag="SF0250" /note="iron coordination sites [ion binding]; other site" /db_xref="CDD:238154" gene complement(270302..271129) /gene="tauC" /locus_tag="SF0251" /db_xref="GeneID:1024347" CDS complement(270302..271129) /gene="tauC" /locus_tag="SF0251" /note="Code: P; COG: COG0600" /codon_start=1 /transl_table=11 /product="taurine ABC transporter permease" /protein_id="NP_706205.1" /db_xref="GeneID:1024347" /translation="MSVLINEKLHSRRLKWRWPLSRQVTLSIGTLAVLLTVWWTVAAL QLISPLFLPPPQQVLAKLLTIAGPQGFMDATLWQHLAASLTRIVLALLAAVVIGIPVG IAMGLSPTVRGILDPVIELYRPVPPLAYLPLMVIWFGIGETSKILLIYLAIFAPVAMS ALAGVKSAQQVRIRAAQSLGASRAQVLWFVILPGALPEILTGLRIGLGVGWSTLVAAE LIAATRGLGFMVQSAGEFLATDVVLAGIAVIAIIAFLLELGLRALQRRLTPWHGEVQ" misc_feature complement(270305..271129) /gene="tauC" /locus_tag="SF0251" /note="taurine ABC transporter permease TauC; Region: PRK10160" /db_xref="CDD:182276" misc_feature complement(order(270479..270496,270725..270769)) /gene="tauC" /locus_tag="SF0251" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(270548..270550,270560..270565, 270581..270619)) /gene="tauC" /locus_tag="SF0251" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(271126..271893) /gene="tauB" /locus_tag="SF0252" /db_xref="GeneID:1024295" CDS complement(271126..271893) /gene="tauB" /locus_tag="SF0252" /note="Code: P; COG: COG1116" /codon_start=1 /transl_table=11 /product="taurine ABC transporter ATP-binding subunit" /protein_id="NP_706206.1" /db_xref="GeneID:1024295" /translation="MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLL NLIAGFVPYQHGSIQLAGKRIEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGIEK MQRLEIAHQMLKKVGLEGAEKRYIWQLSDGQRQRVGIARALAANPQLLLLDEPFGALD AFTRDQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSSGPGRVLERLRLNFA RRFVAGESSRSIKSDPQFIAMREYVLSRVFEQREAFS" misc_feature complement(271129..271893) /gene="tauB" /locus_tag="SF0252" /note="taurine ABC transporter ATP-binding subunit; Region: tauB; PRK11248" /db_xref="CDD:183056" gene complement(271906..272802) /gene="tauA" /locus_tag="SF0253" /db_xref="GeneID:1024308" CDS complement(271906..272802) /gene="tauA" /locus_tag="SF0253" /note="Code: P; COG: COG0715" /codon_start=1 /transl_table=11 /product="taurine ABC transporter substrate-binding subunit" /protein_id="NP_706207.1" /db_xref="GeneID:1024308" /translation="MNVTVAYQTSAEPAKVAQADNTFAKESGASVDWRKFDSGASIVR ALASGDVQIGNLGSSPLAVAASQQVPIEVFLLASKLGNSEALVVKKTISKPEDLIGKR IAVPFISTTHYSLLAALKHWGIKPGLVEIVNLQPPAIIAAWQRGDIDGAYVWAPAVNA LEKDGKVLTDSEQVGQWGAPTLDVWVVRKDFAEKHPEVVKAFAKSAIDAQQPYIANPD AWLKQPENISKLARLSGVPEGDVPGLVKGNTYLTPQQQTAELTGPVNKAIIDTAQFLK EQGKVPAVANDYSQYVTSRFVQ" misc_feature complement(271909..272802) /gene="tauA" /locus_tag="SF0253" /note="taurine transporter substrate binding subunit; Provisional; Region: tauA; PRK11480" /db_xref="CDD:183158" misc_feature complement(order(272254..272256,272332..272334, 272341..272346,272470..272472,272485..272487, 272551..272553,272686..272688,272776..272778)) /gene="tauA" /locus_tag="SF0253" /note="putative chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270278" mobile_element complement(273345..274112) /mobile_element_type="insertion sequence:IS1" gene complement(273360..273755) /gene="insB" /locus_tag="SF0254" /db_xref="GeneID:1024305" CDS complement(273360..273755) /gene="insB" /locus_tag="SF0254" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706208.1" /db_xref="GeneID:1024305" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLKLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(273363..273752) /gene="insB" /locus_tag="SF0254" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(273782..274057) /gene="insA" /locus_tag="SF0255" /db_xref="GeneID:1027436" CDS complement(273782..274057) /gene="insA" /locus_tag="SF0255" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706209.1" /db_xref="GeneID:1027436" /translation="MASISIRCPSCSATEGVVRNGKSTAGHLRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<273785..274036) /gene="insA" /locus_tag="SF0255" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 274202..274870 /gene="ykgH" /locus_tag="SF0256" /db_xref="GeneID:1024329" CDS 274202..274870 /gene="ykgH" /locus_tag="SF0256" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706210.1" /db_xref="GeneID:1024329" /translation="MSEQIKQDIDLIEILFHLKKKIRVILFIMAICMAMVLLFLYINK DNTKVIYSLKINQTTPGILVSCDSNNNFACQTTMTEDVIQRITTFFQTSPDIKNREIR LEWSGDKRDLPTAEEEISRVQASIIKWYASEYHNGRQVLDEIQTPSAINSELYTKMIY LTRNWSLYPNGDGCVTISSPEIKNKYPAAICLALGFFLSIVISVMFCLVKKMVDEYQQ NSGQ" misc_feature 274226..>274489 /gene="ykgH" /locus_tag="SF0256" /note="Capsular polysaccharide biosynthesis protein YveK [Cell wall/membrane/envelope biogenesis]; Region: YveK; COG3944" /db_xref="CDD:443144" gene 274946..275158 /locus_tag="SF0257" /pseudo /db_xref="GeneID:1024324" misc_feature 274946..275158 /locus_tag="SF0257" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786500 (71 aa). BLAST with identity of 95% in 71 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(275113..275955) /gene="ykgG" /locus_tag="SF0258" /db_xref="GeneID:1025970" CDS complement(275113..275955) /gene="ykgG" /locus_tag="SF0258" /note="Code: S; COG: COG1556" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_706211.4" /db_xref="GeneID:1025970" /translation="MRQAGLSMAAKHHSNLARLATGWKHAIFLKLTERVSVVGLRNIR RRRKRMDNRSEFLNNVAQALGRPLRLEPQAEDAPLNNYANERLTQLNQQQRCDAFIQF ASDVMLTRCELTSEAKAAEAAIRLCKELGDQSVVISGDTRLEELGISERLQQECNAVV WDPAKGAENISQAEQAKVGVVYAEYGLTESGGVVLFSAAERGRSLSLLPESSLFILRK STILPRVAQLAEKLHQKAQAGERMPSCINIISGPSSTADIELIKVVGVHGPVKAVYLI IEDC" misc_feature complement(275122..275805) /gene="ykgG" /locus_tag="SF0258" /note="L-lactate utilization protein LutC, contains LUD domain [Energy production and conversion]; Region: LutC; COG1556" /db_xref="CDD:441165" gene complement(275801..277228) /gene="ykgF" /locus_tag="SF0259" /db_xref="GeneID:1024288" CDS complement(275801..277228) /gene="ykgF" /locus_tag="SF0259" /note="Code: C; COG: COG1139" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706212.1" /db_xref="GeneID:1024288" /translation="MSIKTSNTDFKTRIRQQIEDPIMRKAVASAQQRIGANRQKMVDE LGHWEEWRDRAAQIRDHVLSNLDAYLYQLSEKVTQNGGHVYFAKTKEDATRYILQVAQ RKNARKVVKSKSMVTEEIGVNHVLQDAGIQVIETDLGEYILQLDQDPPSHVVVPAIHK DRHQIRRVLHERLGYEGPETPEAMTLFIRQKIREDFLSAEIGITGCNFAVAETGSVCL VTNEGNARMCTTLPKTHIAVMGMERIAPTFAEVDVLITMLARSAVGARLTGYNTWLTG PREAGHVDGPEEFHLVIVDNGRSEVLASEFRDVLRCIRCGACMNTCPAYRHIGGHGYG SIYPGPIGAVISPLLGGYKDFKDLPYACSLCTACDSVCPVRIPLSKLILRHRRVMAEK GITAKAEQRAIKMFAYANSHPGLWKVGMMAGAHAASWFINGGKTPLKFGAISDWMEAR DLPEADGESFRSWFKKHQAQEKKNG" misc_feature complement(275870..277177) /gene="ykgF" /locus_tag="SF0259" /note="iron-sulfur cluster-binding protein; Region: TIGR00273" /db_xref="CDD:129374" gene complement(277239..277958) /gene="ykgE" /locus_tag="SF0260" /db_xref="GeneID:1024322" CDS complement(277239..277958) /gene="ykgE" /locus_tag="SF0260" /note="Code: C; COG: COG0247" /codon_start=1 /transl_table=11 /product="dehydrogenase subunit" /protein_id="NP_706213.1" /db_xref="GeneID:1024322" /translation="MNVNFFVTCIGDALKSRMARDSVLLLEKLGCRVNFPEKQGCCGQ PAINSGYIKEAIPGMKNLIAALEDNDDPIISPAGSCTYAIKSYPTYLADEPEWASRAE KVAARMQDLTSFIVNKLGVVDVGASLQGRAVYHPSCSLARKLGVKDEPLTLLKNVRGL ELLTFAEQDTCCGFGGTFSVKMAEISGEMVKEKVVHLMEVRPEYLIGADVSCLLNISG RLQREGQKVKVMHIAEVLMSR" misc_feature complement(277251..>277946) /gene="ykgE" /locus_tag="SF0260" /note="Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:440017" mobile_element 278322..279089 /mobile_element_type="insertion sequence:IS1" gene 278377..278652 /gene="insA" /locus_tag="SF0261" /db_xref="GeneID:1027524" CDS 278377..278652 /gene="insA" /locus_tag="SF0261" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706214.1" /db_xref="GeneID:1027524" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTVSQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 278398..>278649 /gene="insA" /locus_tag="SF0261" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 278679..279074 /gene="insB" /locus_tag="SF0262" /db_xref="GeneID:1025742" CDS 278679..279074 /gene="insB" /locus_tag="SF0262" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706215.1" /db_xref="GeneID:1025742" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 278682..279071 /gene="insB" /locus_tag="SF0262" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 279259..279744 /locus_tag="SF0263" /db_xref="GeneID:1024327" CDS 279259..279744 /locus_tag="SF0263" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706216.1" /db_xref="GeneID:1024327" /translation="MRAIYLSVQQAWNGKITYSVSGESEFAKKFQGKALPFDVRIISA SQNEDWLVIATKVLPGADLRTYVDFKNSTVHVDSAGLEKVAKCINCNNTLQVNIPHEA GHVLGYLDDDYDSSSPYVGDISGLMNVGMELWERYLKNATITLNIIMPETKFTLLNVT K" gene 279741..280127 /locus_tag="SF0264" /db_xref="GeneID:1025740" CDS 279741..280127 /locus_tag="SF0264" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706217.1" /db_xref="GeneID:1025740" /translation="MKFFCIIVIFLSINYIAIVNVFKSSAVAQSTKYYEENDIHDGSN DIFFMKKYGPPAHEFVRPRYKFVGEYYIGLNQTYRITDPEFQDVPIKEMFWNLQGDLN LTCWFHYKDGQWRVITYIFWPPGARF" gene 280152..282365 /locus_tag="SF0265" /db_xref="GeneID:1024331" CDS 280152..282365 /locus_tag="SF0265" /note="Code: S; COG: COG3501" /codon_start=1 /transl_table=11 /product="Rhs-family protein" /protein_id="NP_706218.1" /db_xref="GeneID:1024331" /translation="MSFVSTGNKPVGNGGPVITTPPIAGESGGMSTGSAVTDVSGAAE EMAEQAAADLFGALPEPSGLVKAAVAAAQAAAAAAGISDMAGAVQDAAASLAAGAPGA HNVTVSGSAVPPQMLLFAGMNGSEGLGNLFSYTVQLKTLDALNLGYVSPAANLPLQLM VGKDLCVSIELDGGGKRYISGLVTAARVVGHESRSVTYELRIEPWLKLLTHTSDYKAF QNKTVVDILDEVLDEYSFPVEKRLVENYPPRAWQVQYGETDFDFIQRLMQEWGIYWWF EHSENSHTLVLVDAINGHKACPDSPLVEWHQEGLKLDKEFIHTITASERLRTGKWVMD DFDFMKPRSLLKSTVASPRDTGHAEYEHYEWPGDYFTTGEGEMLTRIRMEAQRSPGSR AHGAGHIRTLMTGYTFTLMNHPTAEINQEYLLVQTTLFLRDNAQHSGQDQHFTYVTTF ELHPTSEVYRPQRTLSKPHTKGPQSAIVTGPAGQEIWTDKYGRVKVQFGWDRYGKNDE NSSCWIRVSYPWAGKGFGMIQIPRIGQEVLVDFKNGDPDLPIIVGRTYNQDTMPPWGL PGMASQSGIFSHSLQGGPTNGNMLRFDDKTGAEEVKFHAEKDLNTTVKNNETHTVMVD RIKTIVKNETISVGEDRNATITKNDGLSVKLAQTINVGTTYRLDVGDQFTLRCGNAAL VLHKDGSIEFCGKQLLLHTSDVMQLIGSGIDMNPDGGTAMTADDIAPLPTPDVSE" misc_feature 280479..282335 /locus_tag="SF0265" /note="Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only]; Region: VgrG; COG3501" /db_xref="CDD:442724" gene 282388..282833 /locus_tag="SF0260a" /pseudogene="unknown" /db_xref="GeneID:16608304" gene 282855..283262 /locus_tag="SF0266" /db_xref="GeneID:1024335" CDS 282855..283262 /locus_tag="SF0266" /codon_start=1 /transl_table=11 /product="Rhs-family protein" /protein_id="NP_706219.1" /db_xref="GeneID:1024335" /translation="MYEAARVDDPIYHTSALAGFLIGAIIGIAIIAVASFAFFTCGFL AGLILSFLADQIASGVLQLGEAIGRSIHSTVGKILTGSDNVSTNSRPAARAVLSTVIC EDHSPEIRIAQGSGNIYINSQLPVRMTTLSVMQ" misc_feature 283041..>283238 /locus_tag="SF0266" /note="proline-alanine-alanine-arginine (PAAR) repeat superfamily; Region: PAAR_like; cl21497" /db_xref="CDD:451275" gene 283259..285547 /locus_tag="SF0267" /db_xref="GeneID:1024337" CDS 283259..285547 /locus_tag="SF0267" /codon_start=1 /transl_table=11 /product="Rhs-family protein" /protein_id="NP_706220.1" /db_xref="GeneID:1024337" /translation="MIEDGSPNVFLGGGTQTVLEISPEIPDWLRQVVDVLYVVAGMLG GLAGAWRQAAKMGSKFGTKCAAKFIGGEMVGMAISDTVMGLFSNPVDVTTGQKILLPE TDFTLPGRLPVTCSRFYASHLETEGLLGRGWRLNWEINLREDETYITFIGVQGRELSY PKEMLIPGHQIFDPEEQFYLSRLHDGCYVLHYTDRSYYVFDEFDDHGVAPLLFMETPY RQRIAFGRENGRLVRVASSSGHHLLLHRTMTQAGERLSHIELLKGGRPGNLVEYRYDD NGQLTGVVNRAGVTVRQFAYENGLMTEHRNATGFTCTYHWEEIEGFPRVVEHTTSDGE DYRFHYDFAGGQTVVTGRPEQKWQWWFDEETYVTAHRTPGGGMYRFTYNENHFPVAVE LPGERRVTLEYDTLSRVVKETDPAGRVTQTQWNGSFAEITRRALDDDHVWKADYNEHG QVIRETDPEGRVTRYGYDDQGLPETVCHPGKQQDRYTWNALGLLSSHRRITGSVQSWQ YTQRGMLARHTDEEKRETRWQYTPEGLVASLSNGNGAQYRFSYDGDGRLTGEQRPDGL IRMFALNADGFPVIIPTQGTEGGVRNEQQERDALGRLLRSDTQHSTRTFSYNRLDQIT EVTLTPTEEGERLHHMQADTVRFAYDRSGWLTAEHSVHGSIKYRRDALGNPTDITLPD GQHLSHLYYGSGHLLQTALDGITVSEYERDSLHRQVIRTQGKLATFSGYNADNRLSWQ RSLPGGSQNPQQAVLPRRRTTA" misc_feature 283469..>285451 /locus_tag="SF0267" /note="RHS element core protein; Region: RHS_core; NF041261" /db_xref="CDD:469161" gene 285544..286533 /locus_tag="SF0268" /db_xref="GeneID:1027427" CDS 285544..286533 /locus_tag="SF0268" /codon_start=1 /transl_table=11 /product="Rhs-family protein" /protein_id="NP_706221.1" /db_xref="GeneID:1027427" /translation="MTARDYIWNADGEVGGINDKLRGCLVFSYDRSGWLTSRTGQMYD HDHYYYDKAGNLLTDEYQGAVMDNRLPGYGRDRYRYNEWGELTERRDQQLEWNAQGQL TRVISSNSETRYQYDALGRRISKATSNLHTDRGERSRTTFVWEGFRLLQETTWQGKRT YLYDAEQPYTPVAAITGRGESQKIWYYHTDLTGTVHEVTAPDGTLVWAGYQAGFGENR GDISNSGAYFEQPQRLPGQYFDEETGLHYNLFRYYAPECGRFVSQDPIGLNGGLNLYA YAPNPLGWIDPLGLNSLGIDSNNIFRGDGNYKGGGIGQPKSGTISAQDIIDHL" misc_feature <285553..286413 /locus_tag="SF0268" /note="RHS element core protein; Region: RHS_core; NF041261" /db_xref="CDD:469161" gene complement(287582..288352) /gene="yafV" /locus_tag="SF0269" /db_xref="GeneID:1027438" CDS complement(287582..288352) /gene="yafV" /locus_tag="SF0269" /note="Code: R; COG: COG0388; EC 3.5. amidase-type enzyme" /codon_start=1 /transl_table=11 /product="C-N hydrolase amidase" /protein_id="NP_706222.2" /db_xref="GeneID:1027438" /translation="MPSLKITLLQQPLVWVDGPANLRHFDRQLEGITGRDVIVLPEMF TSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTV HFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLAL YVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIA TADAHKATRIDAELSMVALREYREKFPAWRDADEFRLW" misc_feature complement(287585..288352) /gene="yafV" /locus_tag="SF0269" /note="C-N hydrolase family amidase; Provisional; Region: PRK10438" /db_xref="CDD:182461" misc_feature complement(order(287858..287863,287918..287923, 287927..287932,288005..288007,288020..288022, 288032..288034,288209..288211,288227..288229)) /gene="yafV" /locus_tag="SF0269" /note="putative active site [active]" /db_xref="CDD:143599" misc_feature complement(order(287930..287932,288032..288034, 288227..288229)) /gene="yafV" /locus_tag="SF0269" /note="catalytic triad [active]" /db_xref="CDD:143599" misc_feature complement(order(287594..287611,287615..287626, 287663..287665,287669..287674,287678..287680, 287690..287716,287720..287722,287804..287809, 287813..287821,287825..287830,287837..287842, 287900..287902,287906..287920,287927..287929, 288014..288016,288026..288031)) /gene="yafV" /locus_tag="SF0269" /note="multimer interface [polypeptide binding]; other site" /db_xref="CDD:143599" misc_feature complement(order(287594..287611,287615..287626, 287708..287716,287804..287809,287813..287821, 287825..287830,287837..287842,287900..287902, 287906..287920,287927..287929,288014..288016, 288026..288031)) /gene="yafV" /locus_tag="SF0269" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143599" gene 288506..288979 /gene="ykfE" /locus_tag="SF0270" /db_xref="GeneID:1025754" CDS 288506..288979 /gene="ykfE" /locus_tag="SF0270" /codon_start=1 /transl_table=11 /product="C-lysozyme inhibitor" /protein_id="NP_706223.1" /db_xref="GeneID:1025754" /translation="MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTK AAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEK SNQMTGLFSAIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK" misc_feature 288518..288976 /gene="ykfE" /locus_tag="SF0270" /note="C-lysozyme inhibitor; Provisional; Region: PRK09993" /db_xref="CDD:182187" gene complement(289022..291502) /gene="yafH" /locus_tag="SF0271" /db_xref="GeneID:1025972" CDS complement(289022..291502) /gene="yafH" /locus_tag="SF0271" /note="Code: I; COG: COG1960" /codon_start=1 /transl_table=11 /product="acyl-CoA dehydrogenase" /protein_id="NP_706224.4" /db_xref="GeneID:1025972" /translation="MVRPPTSKGLFVMMILSILATVVLLGALFYHRVSLFISSLILLA WTAALGVAGLWSAWVLVPLTIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEA IDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHEL ADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNS LGPGELLQHYGTDEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQ GQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGV EIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPS NSTGGVKSVALATGAYSHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGI MLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITV EGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSF WLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMALLGGSLKRRERISARLG DILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDNLLQNFPNRVVAG LLNVVIFPTGRHYLAPSDKLDHKMAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEA LVDVIAADPIHQRICKELGKNLPFTRLDELAHNALTKGLIDKDEAAILVKAEESRLRS INVDDFDPEELATKPVKLPEKVRKVEAA" misc_feature complement(289025..291460) /gene="yafH" /locus_tag="SF0271" /note="acyl-CoA dehydrogenase FadE; Region: FadE_coli; NF038187" /db_xref="CDD:439499" gene 291706..292284 /gene="gmhA" /locus_tag="SF0272" /db_xref="GeneID:1027423" CDS 291706..292284 /gene="gmhA" /locus_tag="SF0272" /note="Code: G; COG: COG0279" /codon_start=1 /transl_table=11 /product="phosphoheptose isomerase" /protein_id="NP_706225.2" /db_xref="GeneID:1027423" /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFS RYVEAVGREGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK" misc_feature 291706..292281 /gene="gmhA" /locus_tag="SF0272" /note="D-sedoheptulose 7-phosphate isomerase; Region: gmhA; PRK00414" /db_xref="CDD:179012" misc_feature order(291742..291744,291754..291756,291796..291798, 291805..291807,291865..291867,291883..291888, 292219..292224,292234..292236,292243..292245, 292255..292257,292267..292269) /gene="gmhA" /locus_tag="SF0272" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240139" misc_feature order(291859..291867,292060..292068,292075..292077, 292204..292206,292219..292221) /gene="gmhA" /locus_tag="SF0272" /note="active site" /db_xref="CDD:240139" gene 292490..293257 /gene="yafJ" /locus_tag="SF0273" /db_xref="GeneID:1027404" CDS 292490..293257 /gene="yafJ" /locus_tag="SF0273" /note="Code: R; COG: COG0121" /codon_start=1 /transl_table=11 /product="amidotransferase" /protein_id="NP_706226.2" /db_xref="GeneID:1027404" /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK GCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRN WTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIA SLADELRAKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTT PNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV" misc_feature 292490..293245 /gene="yafJ" /locus_tag="SF0273" /note="Glutamine amidotransferases class-II; Region: GATase_4; pfam13230" /db_xref="CDD:433047" misc_feature order(292493..292495,292724..292726,292811..292819, 292874..292876) /gene="yafJ" /locus_tag="SF0273" /note="putative active site [active]" /db_xref="CDD:238889" misc_feature order(292628..292630,292637..292642,292775..292777, 292847..292852,292913..292915) /gene="yafJ" /locus_tag="SF0273" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:238889" gene complement(293228..293968) /gene="yafK" /locus_tag="SF0274" /db_xref="GeneID:1025752" CDS complement(293228..293968) /gene="yafK" /locus_tag="SF0274" /note="Code: S; COG: COG3034" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706227.1" /db_xref="GeneID:1025752" /translation="MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPV YIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQ LKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTG ALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVAN GRYVVSKPLSHEVVQPQLASNYTLPEAK" misc_feature complement(293231..293968) /gene="yafK" /locus_tag="SF0274" /note="peptidoglycan meso-diaminopimelic acid protein amidase; Region: LdtF_DpaA_YafK; NF040599" /db_xref="CDD:468573" gene 294319..294873 /gene="yafL" /locus_tag="SF0275" /pseudo /db_xref="GeneID:1027639" misc_feature 294319..294873 /gene="yafL" /locus_tag="SF0275" /note="Similar to Escherichia coli K12 lipoprotein gi: 1786421 (250 aa). BLAST with identity of 93% in 176 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene 295049..295546 /gene="yafM" /locus_tag="SF0276" /db_xref="GeneID:1025753" CDS 295049..295546 /gene="yafM" /locus_tag="SF0276" /note="Code: L; COG: COG1943" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706228.1" /db_xref="GeneID:1025753" /translation="MSEYRRYYIKGGTWFFTVNLRNRRSHLLTTQFQTLRNAIINVKR DRPFEINAWVVLPEHMHCIWTLPESDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHA IRNTKDYRHHVDYIYINPEKHGWVKQVSDWPFSTFHRDVARGLYPIDWAGDITDLSAG ERIIL" misc_feature 295049..295447 /gene="yafM" /locus_tag="SF0276" /note="REP element-mobilizing transposase RayT [Mobilome: prophages, transposons]; Region: RAYT; COG1943" /db_xref="CDD:441546" gene complement(295763..297502) /gene="fhiA" /locus_tag="SF0278" /db_xref="GeneID:1027425" CDS complement(295763..297502) /gene="fhiA" /locus_tag="SF0278" /note="Code: N; COG: COG1298" /codon_start=1 /transl_table=11 /product="flagellar biosynthetic protein FlhA" /protein_id="NP_706229.1" /db_xref="GeneID:1027425" /translation="MLSRSDLLTLLTINFIVVTKEAERISEVSARFTLDAMPGKQMAI DADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLSGGVC IGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRH QLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSL ETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVIS DGNGVLLPEIRIRENFRLKPSQYAIFINGIEADEADIPADKLMALPSSETYGEIDGVL GNDPAYGIPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQ LHNRLSSMAPRLAEDLSAALNYSQLLKVYRALLTEGVSLRDIVTIATVLVASSTVTKD HILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQAGKVMLDSVP VDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLPRYARLFAPGLHVLSYNEV PDELELKIMGALM" misc_feature complement(295775..297475) /gene="fhiA" /locus_tag="SF0278" /note="Flagellar biosynthesis protein FlhA [Cell motility]; Region: FlhA; COG1298" /db_xref="CDD:440909" gene 297447..298232 /gene="mbhA" /locus_tag="SF0277" /db_xref="GeneID:1027430" CDS 297447..298232 /gene="mbhA" /locus_tag="SF0277" /note="Code: N; COG: COG1360" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706230.2" /db_xref="GeneID:1027430" /translation="MTTIKLIVNSVSKSERESIIAALHGQSIFNGGGLSPLNKISPSH PPKPATVAVPEETEKKARDVNEKTALLKKKSATELGELATSINTIARDAHMEANLEME IVPQGLRVLIKDDQNRNMFERGSAQIMPFFKTLLVELAPVFDSLYNKIIITGHTDAMA YKNNIYNNWNLSGDRALSARRVLEEAGMPEDKVMQVSAMADQMLLDAKNPQSAGNRRI EIMVLTKSASDTLYQYFGQHGDKVVQPLVQKLDKQQVLSQRMR" misc_feature 297447..298208 /gene="mbhA" /locus_tag="SF0277" /note="hypothetical protein; Validated; Region: PRK06778" /db_xref="CDD:235860" gene 298303..299358 /gene="dinP" /locus_tag="SF0279" /db_xref="GeneID:1025748" CDS 298303..299358 /gene="dinP" /locus_tag="SF0279" /note="Code: L; COG: COG0389" /codon_start=1 /transl_table=11 /product="DNA polymerase IV" /protein_id="NP_706231.1" /db_xref="GeneID:1025748" /translation="MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTA NYPARKFGVRSAMPTGMALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSL DEAYLDVTDSVHCHGSATLIAQEIRQTIFNELQLTASAGVAPVKFLAKIASDMNKPNG QFVITPAEVPAFLQTLPLEKIPGVGKVSAAKLEAMGLRTCGDVQKCDLVILLKRFGKF GRILWERSQGIDERDVNSERLRKSVGVERTMAEDIHHWSECEAIIERLYPELERRLAK VKPDLLIARQGVKLKFDDFQQTTQEHVWPRLNKADLIATARKTWDERRGGRGVRLVGL HVTLLDPQMERQLVLGL" misc_feature 298327..299355 /gene="dinP" /locus_tag="SF0279" /note="DNA polymerase IV; Validated; Region: PRK02406" /db_xref="CDD:235035" gene 299410..299703 /gene="yafN" /locus_tag="SF0280" /db_xref="GeneID:1024294" CDS 299410..299703 /gene="yafN" /locus_tag="SF0280" /codon_start=1 /transl_table=11 /product="antitoxin of the YafO-YafN toxin-antitoxin system" /protein_id="NP_706232.1" /db_xref="GeneID:1024294" /translation="MHRILAEKSVNITELRKNPAKYFIDQPVAVLSNNRPAGYLLSAS AFEALMDMLAEQEEKKPIKARFRPSAARLEEITRRAKQYLNDMTDDDFNDFKE" misc_feature 299410..299700 /gene="yafN" /locus_tag="SF0280" /note="type I toxin-antitoxin system antitoxin YafN; Region: PRK09778" /db_xref="CDD:170091" gene 299706..300104 /gene="yafO" /locus_tag="SF0281" /db_xref="GeneID:1025744" CDS 299706..300104 /gene="yafO" /locus_tag="SF0281" /codon_start=1 /transl_table=11 /product="toxin YafO" /protein_id="NP_706233.1" /db_xref="GeneID:1025744" /translation="MRVFKTKLIRLQLTAEELDALTADFISYKRDGVLPDIFGRDALY DDSFTWPLIKFERVAHIHLANVNNPFPPQLRQFSRTNDEAHLVYCQGAFDEQAWLLIA ILKPEPHKLARDNNQMHKIGKMAEAFRMRF" misc_feature 299706..300101 /gene="yafO" /locus_tag="SF0281" /note="type II toxin-antitoxin system YafO family toxin; Region: PRK09885" /db_xref="CDD:236631" gene 300114..300566 /gene="yafP" /locus_tag="SF0282" /db_xref="GeneID:1025743" CDS 300114..300566 /gene="yafP" /locus_tag="SF0282" /note="Code: KR; COG: COG0454" /codon_start=1 /transl_table=11 /product="acyltransferase" /protein_id="NP_706234.1" /db_xref="GeneID:1025743" /translation="MNNIQIRDYQPGDFQQLCAIFIRAVTMTVSQHYSLQQIAAWAQI DESRWKEKLAKSQVRVAVINAKLVGFITCVEHYIDMLFVDPEYTRRGVASALLKPFIK SESELTVDASITAKPFFERYGFQTVKQQRVECRGAWFINFYMRYKPQH" misc_feature 300123..300563 /gene="yafP" /locus_tag="SF0282" /note="GNAT family N-acetyltransferase; Region: PRK09831" /db_xref="CDD:182099" misc_feature order(300354..300362,300390..300395) /gene="yafP" /locus_tag="SF0282" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 300812..301855 /locus_tag="SF0283" /db_xref="GeneID:1024289" CDS 300812..301855 /locus_tag="SF0283" /note="Code: S; COG: COG1690" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706235.2" /db_xref="GeneID:1024289" /translation="MGNYIRPLSDAVFTIASDDLWIESLAIQQLHTTANLPNMQRVVG MPDLHPGRGYPIGAAFFSAGRFYPALVGNDIGCGMALWQTDILARKYNADKFEKRLSA LDDVAEESWLEENLPSAFAQHPWRSSLGSIGGGNHFAELQQVDQIINAELFALAGLDA QHLQLLVHSGSRGLGQSILQRHIASFSHHGLPEGSDDALAFARFNRHLIALRIMQQVK ATGSPVLDVAHNFVSACRIGDQQGVLHRKGATPDDCGLVVIPGSRGDYSRLVQPVRSE ETLHSLAHGAGRKWGRTECKGRLAAKYTATQLSRTELGSRVICRDKQLIFEEAPQAYK SAESVVQCQGRPD" misc_feature 300812..301852 /locus_tag="SF0283" /note="hypothetical protein; Reviewed; Region: PRK09588" /db_xref="CDD:181972" gene 301917..302531 /locus_tag="SF0284" /pseudogene="unknown" /db_xref="GeneID:1027431" gene complement(302588..304045) /gene="pepD" /locus_tag="SF0285" /db_xref="GeneID:1027527" CDS complement(302588..304045) /gene="pepD" /locus_tag="SF0285" /note="Code: E; COG: COG2195" /codon_start=1 /transl_table=11 /product="aminoacyl-histidine dipeptidase" /protein_id="NP_706237.1" /db_xref="GeneID:1027527" /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEYIVGWAKEKG FHVERDQVGNILIRQPATAGMENRKPVVLQAHLDMVPQKNNDTVHDFTKDPIQPYIDG EWVKARGTTLGADNGIGMASALAVLADENVVHGPLEVLLTMTEEAGMDGAFGLQSNWL QADILINTDSEEEGEIYMGCAGGIDFTSNLHLDREAVPAGFETFKLTLKGLKGGHSGG EIHVGLGNANKLLVRFLAGHAEELDLRLIDFNGGTLRNAIPREAFATIAVAADKVDAL KSLVNTYQEILKNELAEKEKNLALLLDSVANDKAALIAKSRDTFIRLLNATPNGVIRN SDVAKGVVETSLNVGVVTMTDNNVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA KGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIG PTITGPHSPDEQVHIESVGHYWTLLTELLKEIPAK" misc_feature complement(302591..304045) /gene="pepD" /locus_tag="SF0285" /note="aminoacyl-histidine dipeptidase; Provisional; Region: PRK15026" /db_xref="CDD:184986" misc_feature complement(order(302900..302905,302912..302917, 302924..302926,303035..303040,303047..303049, 303068..303073,303077..303082,303176..303178, 303188..303190,303347..303349,303377..303379)) /gene="pepD" /locus_tag="SF0285" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349885" gene 304307..304765 /gene="gpt" /locus_tag="SF0286" /db_xref="GeneID:1024293" CDS 304307..304765 /gene="gpt" /locus_tag="SF0286" /note="Code: F; COG: COG0503" /codon_start=1 /transl_table=11 /product="xanthine-guanine phosphoribosyltransferase" /protein_id="NP_706238.1" /db_xref="GeneID:1024293" /translation="MSEKYIVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE MYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPISGR" misc_feature 304307..304762 /gene="gpt" /locus_tag="SF0286" /note="xanthine-guanine phosphoribosyltransferase; Validated; Region: PRK09177" /db_xref="CDD:236395" misc_feature order(304412..304414,304418..304420,304568..304576, 304580..304594,304649..304651) /gene="gpt" /locus_tag="SF0286" /note="active site" /db_xref="CDD:206754" gene 304857..306101 /gene="frsA" /locus_tag="SF0287" /db_xref="GeneID:1027422" CDS 304857..306101 /gene="frsA" /locus_tag="SF0287" /note="Code: R; COG: COG1073" /codon_start=1 /transl_table=11 /product="fermentation/respiration switch protein" /protein_id="NP_706239.1" /db_xref="GeneID:1027422" /translation="MTQANLSETLFKPRFKHPETSTLVRRFNHGAQPPVQSALDGKTI PHWYRMINRLMWIWRGIDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA TQAMVWQQKACTEEDPQLSGRHWLHAATLYNIAAYPHLKGDDLAEQAQALSNRAYEEA AQRLPGTMRQMEFTVPGGAPITGFLHMPKGDGPFPTVLMCGGLDAMQTDYYSLYERYF APRGIAMLTIDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA NVAVRLAYLESPRLKAVACLGPVVHTLLSDFKCQQQVPEMYLDVLASRLGMHDASDEA LRVELNRYSLKVQGLLGRRCPTPMLSGYWKNDPFSPEEDSRLITSSSADGKLLEIPFN PVYRNFDKGLQEITGWIEKRLC" misc_feature 304857..306098 /gene="frsA" /locus_tag="SF0287" /note="esterase FrsA; Region: frsA; PRK05077" /db_xref="CDD:235337" gene 306159..306560 /gene="crl" /locus_tag="SF0288" /db_xref="GeneID:1024314" CDS 306159..306560 /gene="crl" /locus_tag="SF0288" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator Crl" /protein_id="NP_706240.1" /db_xref="GeneID:1024314" /translation="MTLPSGHPKSRLIKKFTALGPYIREGKCEDNRFFFDCLAVCVNV KPAPEVREFWGWWMELEAQESRFTYSYQFGLFDKAGDWKSVPVKDTEVVERLEHTLRE FHEKLRELLTTLNLKLEPANDFRDEPVKLTA" misc_feature 306159..306539 /gene="crl" /locus_tag="SF0288" /note="sigma factor-binding protein Crl; Region: PRK10984" /db_xref="CDD:182882" gene complement(306599..307654) /gene="phoE" /locus_tag="SF0289" /db_xref="GeneID:1027629" CDS complement(306599..307654) /gene="phoE" /locus_tag="SF0289" /note="Code: M; COG: COG3203" /codon_start=1 /transl_table=11 /product="outer membrane phosphoporin protein E" /protein_id="NP_706241.2" /db_xref="GeneID:1027629" /translation="MKKSTLALVVMGIVASASVQAAEIYNKDGNKLDVYGKVKAMHYM SDNASKDGDQSYIRFGFKGETQINDQLTGYGRWEAEFAGNKAESDTAQQKTRLAFAGL KYKDLGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFF GVIDGLNLTLQYQGKNENRDVKKQNGDGFGTSLTYDFGGSDFAISGAYTNSDRTNEQN LQSRGTGKRAEAWATGLKYDANNIYLATFYSETRKMTPITGGFANKTQNFEAVAQYQF DFGLRPSLGYVLSKGKDIEGIGDEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNK LNINNDDTVAVGMTYQF" misc_feature complement(306602..307654) /gene="phoE" /locus_tag="SF0289" /note="phosphoporin PhoE; Region: PRK10159" /db_xref="CDD:182275" misc_feature complement(order(306602..306604,306608..306610, 306614..306616,306701..306703,306710..306715, 307205..307210,307214..307216,307313..307321, 307349..307363,307367..307372,307403..307414, 307418..307420,307424..307432,307436..307438, 307454..307468,307529..307537,307541..307543, 307559..307561,307565..307567)) /gene="phoE" /locus_tag="SF0289" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238208" misc_feature complement(order(307214..307216,307274..307276, 307367..307369,307481..307483,307544..307546)) /gene="phoE" /locus_tag="SF0289" /note="eyelet of channel [active]" /db_xref="CDD:238208" mobile_element 307775..308542 /mobile_element_type="insertion sequence:IS1" gene 307830..308105 /gene="insA" /locus_tag="SF0290" /db_xref="GeneID:1027432" CDS 307830..308105 /gene="insA" /locus_tag="SF0290" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706242.1" /db_xref="GeneID:1027432" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTVSQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 307851..>308102 /gene="insA" /locus_tag="SF0290" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 308132..308527 /gene="insB" /locus_tag="SF0291" /db_xref="GeneID:1027636" CDS 308132..308527 /gene="insB" /locus_tag="SF0291" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706243.1" /db_xref="GeneID:1027636" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 308135..308524 /gene="insB" /locus_tag="SF0291" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 308718..309821 /gene="proB" /locus_tag="SF0292" /db_xref="GeneID:1027426" CDS 308718..309821 /gene="proB" /locus_tag="SF0292" /note="Code: E; COG: COG0263" /codon_start=1 /transl_table=11 /product="gamma-glutamyl kinase" /protein_id="NP_706244.2" /db_xref="GeneID:1027426" /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQML LTRADMEDRERFLNARDTLRALLDNNIVPVINENDAVATAEIKVGDNDNLSALAAILA GADKLLLLTDQKGLYTADPRRNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKL QAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLENRKRWIFGAPPAG EITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDA LRRIAGHHSQEIDAILGYEYGPVAVHRDDMITR" misc_feature 308730..309815 /gene="proB" /locus_tag="SF0292" /note="glutamate 5-kinase; Region: proB; TIGR01027" /db_xref="CDD:162163" gene 309833..311086 /gene="proA" /locus_tag="SF0293" /db_xref="GeneID:1024291" CDS 309833..311086 /gene="proA" /locus_tag="SF0293" /note="Code: E; COG: COG0014" /codon_start=1 /transl_table=11 /product="gamma-glutamyl phosphate reductase" /protein_id="NP_706245.1" /db_xref="GeneID:1024291" /translation="MLEQMGIAAKQASYKLAQLSSREKNRVLEKIADELEAQSEIILN ANAQDVADARANGLSEAMLDRLALTPARLKGIADDVRQVCNLADPVGQVIDGGVLDSG LRLERRRVPLGVIGVIYEARPNVTVDVASLCLKTGNAVILRGGKETCRTNAATVAVIQ DALKSCGLPAGAVQAIDNPDRALVSEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI TGGIGVCHIYVDESAEIAEALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQ MAESGVTLHADAAALTQLQAGPAKVVAVKAEEYDDEFLSLDLNVKIVSDLDDAIAHIR EHGTQHSDAILTRDMRNAQRFVNEVDSSAVYVNASTRFTDGGQFGLGAEVAVSTQKLH ARGPMGLEALTTYKWIGIGDYTIRA" misc_feature 309833..311083 /gene="proA" /locus_tag="SF0293" /note="gamma-glutamyl phosphate reductase; Provisional; Region: proA; PRK00197" /db_xref="CDD:234685" misc_feature 310589..310591 /gene="proA" /locus_tag="SF0293" /note="putative catalytic cysteine [active]" /db_xref="CDD:143398" gene 311201..311276 /locus_tag="SF4443" /db_xref="GeneID:3161801" tRNA 311201..311276 /locus_tag="SF4443" /product="tRNA-Thr" /codon_recognized="ACG" /db_xref="GeneID:3161801" gene complement(311291..311755) /locus_tag="SF0294" /db_xref="GeneID:1027631" CDS complement(311291..311755) /locus_tag="SF0294" /codon_start=1 /transl_table=11 /product="phage integrase" /protein_id="NP_706246.1" /db_xref="GeneID:1027631" /translation="MPVHLKESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESC TKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVLQ EMGGWESIEMVRRYAHLAPNHLTEHARQIDLILNPSVPNLSQSRNKEGTNDV" misc_feature complement(311402..>311749) /locus_tag="SF0294" /note="Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain; Region: INT_Rci_Hp1_C; cd00796" /db_xref="CDD:271177" misc_feature complement(order(311408..311410,311501..311506, 311513..311515)) /locus_tag="SF0294" /note="active site" /db_xref="CDD:271177" mobile_element complement(311740..313002) /mobile_element_type="insertion sequence:IS600" gene complement(311782..312600) /locus_tag="SF0295" /db_xref="GeneID:1027528" CDS complement(311782..312600) /locus_tag="SF0295" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706247.1" /db_xref="GeneID:1027528" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(311809..>312600) /locus_tag="SF0295" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(312636..312938) /locus_tag="SF0296" /db_xref="GeneID:1027623" CDS complement(312636..312938) /locus_tag="SF0296" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706248.1" /db_xref="GeneID:1027623" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(312666..312938) /locus_tag="SF0296" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(312995..313720) /locus_tag="SF0297" /db_xref="GeneID:1027632" CDS complement(312995..313720) /locus_tag="SF0297" /note="Code: L; COG: COG0582" /codon_start=1 /transl_table=11 /product="phage integrase" /protein_id="NP_706249.1" /db_xref="GeneID:1027632" /translation="MSLFRRGEIWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAE AWRVSKLGEIPDITFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGIQLRDITESK IYSAMQKMTNRRHEENWKLRAESCRKKGKPVPEYTPKPASVATKATHLSFIKALLRAA EREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSN IINLEWQQINMQRRVAWINPEVR" misc_feature complement(<313010..313552) /locus_tag="SF0297" /note="Site-specific recombinase XerD [Replication, recombination and repair]; Region: XerD; COG4974" /db_xref="CDD:443999" gene complement(313947..314252) /gene="yfdT" /locus_tag="SF0298" /db_xref="GeneID:1027624" CDS complement(313947..314252) /gene="yfdT" /locus_tag="SF0298" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706250.1" /db_xref="GeneID:1027624" /translation="MTTFTDKELIKEIKERISSLDVRDDIERRAYEIALLSLEVEPDE REAYELFMEKRFGDLVDRRRAKNGDNEYMAWDMTLGWIVWQQRAGIHFSTMSQQEVK" gene complement(314252..314629) /locus_tag="SF0299" /db_xref="GeneID:1027628" CDS complement(314252..314629) /locus_tag="SF0299" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706251.1" /db_xref="GeneID:1027628" /translation="MLPSETMICQPEFTDKTLSRKPGAVQKVNETDAEYLVRKFDELE AKCAAQENKVIPVSTELPPANESVLLFDANGEGWLIGWRSLWYTWGQKETGEWQWTFQ VGDLENVNITHWAVMPKAPEAGA" mobile_element complement(314553..315858) /mobile_element_type="insertion sequence:IS629" gene complement(314595..315478) /locus_tag="SF0300" /pseudogene="unknown" /db_xref="GeneID:1025976" gene complement(315478..315804) /locus_tag="SF0301" /db_xref="GeneID:1027437" CDS complement(315478..315804) /locus_tag="SF0301" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_706253.1" /db_xref="GeneID:1027437" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature complement(315514..315801) /locus_tag="SF0301" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element 315983..317246 /mobile_element_type="insertion sequence:IS600" gene 316047..316349 /locus_tag="SF0302" /db_xref="GeneID:1027433" CDS 316047..316349 /locus_tag="SF0302" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706254.1" /db_xref="GeneID:1027433" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 316047..316319 /locus_tag="SF0302" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 316385..317203 /locus_tag="SF0303" /db_xref="GeneID:1027634" CDS 316385..317203 /locus_tag="SF0303" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706255.1" /db_xref="GeneID:1027634" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <316385..317176 /locus_tag="SF0303" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 317867..318229 /gene="gtrAI" /locus_tag="SF0305" /db_xref="GeneID:1027630" CDS 317867..318229 /gene="gtrAI" /locus_tag="SF0305" /codon_start=1 /transl_table=11 /product="flippase" /protein_id="NP_706257.1" /db_xref="GeneID:1027630" /translation="MLKLFVKYTSIGVLNTLIHWVVFGVCIYAAHTSQALANFTGFVV AVSFSFFANARFTFKALTTAMRYMLYVGFMGILSVIVGWAADKCSLPPIVTLITFSAI SLVCGFVYSKFIVFRDAK" misc_feature 317867..318226 /gene="gtrAI" /locus_tag="SF0305" /note="Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) [Lipid transport and metabolism]; Region: GtrA; COG2246" /db_xref="CDD:441847" gene 318226..319155 /gene="gtrBI" /locus_tag="SF0306" /db_xref="GeneID:1025741" CDS 318226..319155 /gene="gtrBI" /locus_tag="SF0306" /note="Code: M; COG: COG0463" /codon_start=1 /transl_table=11 /product="bactoprenol glucosyl transferase" /protein_id="NP_706258.1" /db_xref="GeneID:1025741" /translation="MKISLVVPVFNEEEAIPVFYKTVREFQELKPYEVEIVFINDGSK DATESIINALAVSDPLVVPLSFTRNFGKEPALFAGLDHASGDAVIPIDVDLQDPIEVI PHLIEKWQAGADMVLAKRSDRSTDGRLKRKTAEWFYKLHNKISTPKIEENVGDFRLMS REVVENIKLLPERNLFMKGILSWVGGQTDVVEYVRAERVAGISKFNGWKLWNLALEGI TSFSTFPLRVWTYIGLFVASISFLYGAWMIIDTLVFGNPVRGYPSLLVSILFLGGVQL IGIGVLGEYIGRIYIEVKNRPKYIIKKSHRGNP" misc_feature 318238..318780 /gene="gtrBI" /locus_tag="SF0306" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature order(318247..318249,318253..318255,318505..318507) /gene="gtrBI" /locus_tag="SF0306" /note="Ligand binding site [active]" /db_xref="CDD:133030" misc_feature order(318346..318348,318502..318507) /gene="gtrBI" /locus_tag="SF0306" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature 318499..318507 /gene="gtrBI" /locus_tag="SF0306" /note="DXD motif [active]" /db_xref="CDD:133030" gene 319152..320612 /gene="gtrII" /locus_tag="SF0307" /db_xref="GeneID:1025749" CDS 319152..320612 /gene="gtrII" /locus_tag="SF0307" /codon_start=1 /transl_table=11 /product="glucosyl transferase II" /protein_id="NP_706259.1" /db_xref="GeneID:1025749" /translation="MIKINLLKNANLLAFISCFAISIYCYWGWLYDGTLNIDGEFTNN FYQTITLGRWFHTFLRHYFLPEPFSLYITPLIALSFIIISAFIICRSLKLESYELLIG MLVFITFPQISYQLEFLNQADTVGIAFLLAAISAIIFHSQKNRIVIFSGIVLSILSMA IYQTFVTYIIAFVIGLQINSIIRNEKNIRESFYSSCLSLSLIALSTLIYLLLTKAIKH YFSLESNEYISNYIQNASDIKWLVKSAIDNIYNFYNNPPTGLNLYKWLLIPLLILMFT LTYKLKTRSIYLISSIIFIYILPVIFIVVVGSGAPPRLFVLMPIVAVILFSCLSNFRS IKYLNCMFFLFIIFNGVSTSKNLFLNDTLARQKDISLAKEISYTSQTKGISLNGKYIY IYGSNDSGNMLSMSADTFGKSFFWWDGGNYFRMVAFMNYYGICNCKPANKEQIEKIYP IVKSLPSWPNPDSIAEINGLVIIKLSEKKGWLPFNI" misc_feature 319251..320129 /gene="gtrII" /locus_tag="SF0307" /note="Glucosyl transferase GtrII; Region: Glucos_trans_II; cl23811" /db_xref="CDD:451558" gene complement(321002..322192) /locus_tag="SF0308" /db_xref="GeneID:1027626" CDS complement(321002..322192) /locus_tag="SF0308" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706260.1" /db_xref="GeneID:1027626" /translation="MPARKVCQTFFRNALASTHQYRQNAIIDSAAALVGGASLSLTSI GRHLPGPARVKDKIKRVDCLLGNKRLHNDIPLIFKNITSMMTNKLSWCVIAVDWSGYP FQEYHVLRASLLCDGRSIPLMSQVFPSKKNNEAVEIAFLDALSGAISPRTRVVIVTDA GFQSAWFRHIKSQGWDFIGRIRGVVKFRLDSDKDKWLDIKMCRGSSEAKYLGTGTLAR KKRSQCEGHFYLYKHSPKGRKSRRARGRPGLPTTEKEQKAAGREPWLIFSNTAEFNAK KIMKLYSRRMQIEQNFRDEKSERFGFGLRASRSRRGERFLVLSLLVTLASIVLWLLGY HFENKGFHLKYQANSLKKRRVLSFLTLAENVLRFNPELLRRAQPEKILCRLASTYRSM VLAY" misc_feature complement(321020..322078) /locus_tag="SF0308" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" mobile_element 322158..322274 /note="partial" /mobile_element_type="insertion sequence:ISSfl3" gene 322643..323692 /locus_tag="SF0309" /db_xref="GeneID:1025747" CDS 322643..323692 /locus_tag="SF0309" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706261.1" /db_xref="GeneID:1025747" /translation="MYNNKIDSNRKIRHDWVDALKFLGIFAIYLGHLGLGAGKLYPFV FSYHVPLFFFAAGFFTIKKNDLSVFDYIKSKFYRLMIPYFTFAFSILIINTINSGETI DYIYNHIYDIIYGVRNNQFVGTIWFINCLFVIIAIDAIFREIVKNNIVILIISLLSFM LSQTVLNHNPLLDPQWFWNIDSAMAYWWLLPLGRCMFLELTRDRFFGKSKIGFIVFSI TAIMSAYQLLNQKPLLFKIISIFNADIISSSYIQAINTIITTVGLIIFNIFIAKIICG NDFIVRAGRNTLNICGMEYITKLFIPMALAIIGFSVTIPNPICAIIYTCICVYVSDKI GHWLSRTVGGPFLIK" misc_feature 322664..323512 /locus_tag="SF0309" /note="Fucose 4-O-acetylase or related acetyltransferase [Carbohydrate transport and metabolism]; Region: NolL; cl46764" /db_xref="CDD:481104" gene complement(324465..324899) /locus_tag="SF0310" /db_xref="GeneID:1027428" CDS complement(324465..324899) /locus_tag="SF0310" /codon_start=1 /transl_table=11 /product="phage tail fiber protein" /protein_id="NP_706262.1" /db_xref="GeneID:1027428" /translation="MRITLQWDINKMSYFYSASTNGFYSTEFHGTNIPDDAVEISESE WKTLINAQSVTKMITCGENGHPVIVDRPSPTPEQLALINDEKKSALIAEATNVIAPLQ DAVDLGMATDDETKLLLAWKKYRVLLMRVNVVKPEWPMHPNK" misc_feature complement(324471..324803) /locus_tag="SF0310" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; cl17077" /db_xref="CDD:450149" gene complement(324871..325521) /locus_tag="SF0311" /db_xref="GeneID:1025750" CDS complement(324871..325521) /locus_tag="SF0311" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706263.1" /db_xref="GeneID:1025750" /translation="MHRIDTKTAKKDKFGAGKNGFTRGNPQTGTPATDLDDDYFDMLQ EELCSVVEASGASLEKGRHDQLLTALRALLLSRKNPFGDIKSDGTVKTALENLGLGEA AKRNVGTGANQIPDMSLFASINTVTAAAQKFPSGLILQCGQLNGAPNVSSTYGMRFPM TFSRVIAVVVTLNVTGAAGQPTVSATSVQNTGFNITVSPGSGYGSSADAYYIAMGY" mobile_element complement(325531..326794) /mobile_element_type="insertion sequence:IS600" gene complement(325574..326392) /locus_tag="SF0312" /db_xref="GeneID:1027656" CDS complement(325574..326392) /locus_tag="SF0312" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706264.1" /db_xref="GeneID:1027656" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(325601..>326392) /locus_tag="SF0312" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(326428..326730) /locus_tag="SF0313" /db_xref="GeneID:1027526" CDS complement(326428..326730) /locus_tag="SF0313" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706265.1" /db_xref="GeneID:1027526" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATVYFAQESLKNTR" misc_feature complement(326458..326730) /locus_tag="SF0313" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 326916..328079 /locus_tag="SF0314" /db_xref="GeneID:1027429" CDS 326916..328079 /locus_tag="SF0314" /note="Code: L; COG: COG0582" /codon_start=1 /transl_table=11 /product="phage integrase" /protein_id="NP_706266.1" /db_xref="GeneID:1027429" /translation="MSLFRRGEIWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAE AWRVSKLGEIPDITFEEACVRWLEEKAHKKSLDDDKSRIGFWLQHFAGMQLRDITESK IYSAMQKMTNRRHEENWRLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLRAA EREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSN IINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKES CTKPDGTKAPTVRKMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLVQAGVPLSVL QEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNSSQSKNKEGTNDV" misc_feature 327084..328010 /locus_tag="SF0314" /note="Site-specific recombinase XerD [Replication, recombination and repair]; Region: XerD; COG4974" /db_xref="CDD:443999" gene 328428..329600 /locus_tag="SF0315" /db_xref="GeneID:1025746" CDS 328428..329600 /locus_tag="SF0315" /codon_start=1 /transl_table=11 /product="acyltransferase" /protein_id="NP_706267.1" /db_xref="GeneID:1025746" /translation="MHMIEINSLLLITSVILMSLLAVGLFDKISPINLVEHGRNNQID GMRGFLAIFVLIHHAAIWNGYLSSGVWEAPSSNLLANLGQVGVSFFFMITGYLFFSKI ISGDQDWTRLYVSRLLRLTPMFIVSLCLIFIIVGFKSGWRMQVSTEELFVSIMKWLPF TALGMPNINDVKDSFTINAAVTWTLVYEWFFYFSLPVISALIKRKVSIYMVMISAISL FVFILFFSKIHIASFLFGLLAFLLNKSKIVNGIAKAKVTPIIITAIMVFEMTYFKTTY APLPLILCGITFIIIASGCDLYGILRLNITRKLGETTYSVYLLHGIFLYCLMTWIIPN NYTENTFIILVSTTAFLITFTSCLTFKLIETPFIKLTKQTTTLVKELIPTLTNNNQ" misc_feature 328536..329537 /locus_tag="SF0315" /note="Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis]; Region: OafA; COG1835" /db_xref="CDD:441440" mobile_element complement(330362..331545) /note="partial" /mobile_element_type="insertion sequence:IS600" gene complement(330404..331222) /locus_tag="SF0317" /db_xref="GeneID:1025978" CDS complement(330404..331222) /locus_tag="SF0317" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706269.1" /db_xref="GeneID:1025978" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(330431..>331222) /locus_tag="SF0317" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(331258..331620) /locus_tag="SF0318" /db_xref="GeneID:1027642" CDS complement(331258..331620) /locus_tag="SF0318" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706270.1" /db_xref="GeneID:1027642" /translation="MLPSETMIWQPEFTDKTLSRKPGAVQRYSKEFKAEAVRTVLENQ LSISEGASRLSLPEGTLGQWVTAARKGLGTPGSRTLAELESEILQLRKALNEARLERD ILKKATAYFAQESLKNTR" misc_feature complement(331288..331542) /locus_tag="SF0318" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element complement(331544..332849) /mobile_element_type="insertion sequence:IS629" gene complement(331586..332469) /locus_tag="SF0319" /pseudogene="unknown" /db_xref="GeneID:1027657" gene complement(332469..332795) /locus_tag="SF0320" /db_xref="GeneID:1027649" CDS complement(332469..332795) /locus_tag="SF0320" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_706272.1" /db_xref="GeneID:1027649" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWGRQHERDTGGGDGGLITAERQRLKEPERENRELRRSNNILRLASAYFAKAEF DRLWKK" misc_feature complement(332505..332792) /locus_tag="SF0320" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 332946..334061 /gene="adrA" /locus_tag="SF0321" /db_xref="GeneID:1027652" CDS 332946..334061 /gene="adrA" /locus_tag="SF0321" /codon_start=1 /transl_table=11 /product="diguanylate cyclase AdrA" /protein_id="NP_706273.1" /db_xref="GeneID:1027652" /translation="MFPKIMNDENFFKKAAAHGEEPPLTPQNEHQRSGLRFARRVRLP RAVGLAGMFLPIASTLVSHPPPGWWWLVLVGWAFVWPHLAWQIASRAVDPLSREIYNL KTDAVLAGMWVGVMGVNVLPSTAMLMILCLNLMGAGGPRLFVAGLVLMVVSCLVTLEL TGITVSFNSAPLEWWLSLPIIVVYPLMFGWVSYQTATKLAEHKRRLQVMSTRDGMTGV YNRRHWETMLRNEFDNCRRHNRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQ ITLRGSDVIGRFGGDEFAVIMSGTPAESAITAMLRVREGLNTLRLPNTPQVTLRISVG VAPLNPQMSHYREWLKSADLALYKAKKAGRNRTEVAA" misc_feature 332961..334058 /gene="adrA" /locus_tag="SF0321" /note="diguanylate cyclase AdrA; Provisional; Region: adrA; PRK10245" /db_xref="CDD:182329" gene complement(334078..334887) /gene="proC" /locus_tag="SF0322" /db_xref="GeneID:1027435" CDS complement(334078..334887) /gene="proC" /locus_tag="SF0322" /note="Code: E; COG: COG0345" /codon_start=1 /transl_table=11 /product="pyrroline-5-carboxylate reductase" /protein_id="NP_706274.1" /db_xref="GeneID:1027435" /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAA LHDQFGINAAESAQEVAQIADIIFAAVKPGIMIKVLSEITSSLNKDSLVVSIAAGVTL DQLARALGHDRKIIRAMPNTPALVNAGMTSVTPNALVTPEDTADVLNIFRCFGEAEVI AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET GEHPGALKDMVCSPGGTTIEAVRVLEEKGFRAAVIEAMTKCMEKSEKLSKS" misc_feature complement(334081..334887) /gene="proC" /locus_tag="SF0322" /note="pyrroline-5-carboxylate reductase; Reviewed; Region: PRK11880" /db_xref="CDD:237008" gene 335007..335465 /gene="yaiI" /locus_tag="SF0323" /db_xref="GeneID:1025739" CDS 335007..335465 /gene="yaiI" /locus_tag="SF0323" /note="Code: S; COG: COG1671" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706275.4" /db_xref="GeneID:1025739" /translation="MTIWVDADACPNVIKEILYRAAERMQMPLVLVANQSLRVPPSRF IRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEAIEKGAAALNSRGERYTPATI RERLTMRDFMDTLRASGIQTGGPDSLSQRDRQAFAAELEKWWLEVQRSRG" misc_feature 335007..335435 /gene="yaiI" /locus_tag="SF0323" /note="Uncharacterized conserved protein YaiI, UPF0178 family [Function unknown]; Region: YaiI; COG1671" /db_xref="CDD:441277" gene 335648..336172 /gene="aroL" /locus_tag="SF0324" /db_xref="GeneID:1027653" CDS 335648..336172 /gene="aroL" /locus_tag="SF0324" /note="Code: E; COG: COG0703" /codon_start=1 /transl_table=11 /product="shikimate kinase II" /protein_id="NP_706276.2" /db_xref="GeneID:1027653" /translation="MTQPLFLIGPRGCGKTTVGMALADSLNRRFVDTDQWLQSQLNMT VAEIVEREEWAGFRARETAALEAVTAASTVIATGGGIILTEFNRHFMQNNGIVVYLCA PVSVLVNRLQAAPEEDLRPTLTGKPLSEEVQEVLEERDALYREVAHIIIDATNEPSQV ISEIRSALAQTINC" misc_feature 335648..336157 /gene="aroL" /locus_tag="SF0324" /note="shikimate kinase AroL; Region: aroL; PRK03731" /db_xref="CDD:235153" misc_feature order(335681..335698,335975..335977,336005..336007) /gene="aroL" /locus_tag="SF0324" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:238260" misc_feature order(335693..335695,335741..335743,335747..335749) /gene="aroL" /locus_tag="SF0324" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:238260" misc_feature order(335747..335749,335819..335821,335828..335830, 335879..335887,336062..336064) /gene="aroL" /locus_tag="SF0324" /note="putative shikimate binding site [active]" /db_xref="CDD:238260" gene 336222..336413 /gene="yaiA" /locus_tag="SF0325" /db_xref="GeneID:1027640" CDS 336222..336413 /gene="yaiA" /locus_tag="SF0325" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706277.1" /db_xref="GeneID:1027640" /translation="MPTKPPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLISEH PTAQEAMDAKKRYEDPDKE" misc_feature 336222..336410 /gene="yaiA" /locus_tag="SF0325" /note="hypothetical protein; Provisional; Region: PRK10380" /db_xref="CDD:182421" gene 336671..337348 /gene="aroM" /locus_tag="SF0326" /db_xref="GeneID:1027658" CDS 336671..337348 /gene="aroM" /locus_tag="SF0326" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706278.1" /db_xref="GeneID:1027658" /translation="MSASLAILTIGIVPMQEVLPLLTEYIDEDNISHHSLLGKLSREE VMAEYAPEAGEDTILTLLNDNQLAHVSRRKVERDLQGVVEVLDNQGYDVILLMSTANI SSMTARNTIFLEPSRILPPLVSSIVEDHQVGVIVPVEEMLPVQAQKWQILQKSPVFSL GNPIHDSEQKIIDAGKELLAKGADVIMLDCLGFHQRHRDLLQKQLDVPVLLSNVLIAR LAAELLV" misc_feature 336671..337342 /gene="aroM" /locus_tag="SF0326" /note="hypothetical protein; Provisional; Region: PRK10481" /db_xref="CDD:182491" gene 337420..337704 /gene="yaiE" /locus_tag="SF0327" /db_xref="GeneID:1027641" CDS 337420..337704 /gene="yaiE" /locus_tag="SF0327" /note="Code: S; COG: COG3123" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706279.1" /db_xref="GeneID:1027641" /translation="MLQSNEYFSGKVKSIGFSSSSTGRASVGVMVEGEYTFSTAEPEE MTVISGALNVLLPDATDWQVYEAGSVFNVPGHSEFHLQVAEPTSYLCRYL" misc_feature 337420..337701 /gene="yaiE" /locus_tag="SF0327" /note="pyrimidine/purine nucleoside phosphorylase; Region: PRK10579" /db_xref="CDD:182565" gene 337913..338194 /locus_tag="SF0328" /db_xref="GeneID:1027646" CDS 337913..338194 /locus_tag="SF0328" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706280.1" /db_xref="GeneID:1027646" /translation="MLQSRNDHLRQTALRNAHTPASLLTTLTEPQDRSLAINNPQLAA DVKTAWLKEDPSLLLFVEQPDLSQLRDLVKTGATRKIRSEARHRLEEKQ" misc_feature 337949..338191 /locus_tag="SF0328" /note="Protein of unknown function (DUF2773); Region: DUF2773; pfam10971" /db_xref="CDD:287885" gene 338191..338646 /locus_tag="SF0329" /db_xref="GeneID:1027647" CDS 338191..338646 /locus_tag="SF0329" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706281.1" /db_xref="GeneID:1027647" /translation="MTQRPWSKLQREIYDLLTPTINLQIHCTRYPMRSQNGGSTDLPR YWITLDKNVIWDYPKDFIAGNAGVRNFHGETCWYPYLTDICSISDLLREYIDTPKAEL LTKQFTSDKWGLVNILRAADRRIGMRRLDQLRRKTHNIAALKIIARRSE" gene complement(338724..339635) /gene="rdgC" /locus_tag="SF0331" /db_xref="GeneID:1027650" CDS complement(338724..339635) /gene="rdgC" /locus_tag="SF0331" /note="Code: L; COG: COG2974" /codon_start=1 /transl_table=11 /product="recombination associated protein" /protein_id="NP_706282.2" /db_xref="GeneID:1027650" /translation="MLWFKNLMVYRLSREISLRAEEMEKQLASMAFTPCGSQDMAKMG WVPPMGSHSDALTHVANGQIVICARKEEKILPSPVIKQALEAKIAKLEAEQARKLKKT EKDSLKDEVLHSLLPRAFSRFSQTMMWLDTVNGLIMVDCASAKKAEDTLALLRKSLGS LPVVPLSMENPIELTLTEWVRSGSAAQGFQLLDEAELKSLLEDGGVIRAKKQDLTSEE ITNHIEAGKVVTKLALDWQQRIQFVMCDDGSLKRLKFCDELRDQNEDIDREDFAQRFD ADFILMTGELAALIQNLIEGLGGEAQR" misc_feature complement(338727..339632) /gene="rdgC" /locus_tag="SF0331" /note="recombination associated protein; Reviewed; Region: rdgC; PRK00321" /db_xref="CDD:234726" gene 339622..340668 /gene="yajF" /locus_tag="SF0330" /db_xref="GeneID:1027674" CDS 339622..340668 /gene="yajF" /locus_tag="SF0330" /note="Code: K; COG: COG1940" /codon_start=1 /transl_table=11 /product="NagC-like transcriptional regulator" /protein_id="NP_706283.3" /db_xref="GeneID:1027674" /translation="MNHSMIISTALSLNLAGMITNCRRPCIANPVVRLYAIDIEKNKE STVRIGIDLGGTKTEVIALGDAGEQLYRHRLPTPRDDYRQTIETIATLVDMAEQATGQ RGTVGMGIPGSISPYTGVVKNVNSTWLNGQPFDKDLSARLQREVRLANDANCLAVSEA VDGAAAGAQTVFAVIIGTGCGAGVAFNGRTHIGGNGTAGEWGHNPLPWMDEDELRYRE EVPCYCGKQGCIETFISGTGFATDYRRLSGHALKGSEIIRLVEESDPVAELALRRYEL RLAKSLAHVVNILDPDVIVLGGGMSNVDRLYQTVGQLIKQFVFGGECETPVSKAKHGD SSGVRGAAWLWPQE" misc_feature 339760..340662 /gene="yajF" /locus_tag="SF0330" /note="fructokinase; Reviewed; Region: PRK09557" /db_xref="CDD:236565" gene 340647..340788 /locus_tag="SF0332" /pseudo /db_xref="GeneID:1027635" misc_feature 340647..340788 /locus_tag="SF0332" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786594 (81 aa). BLAST with identity of 97% in 47 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(340811..341992) /gene="araJ" /locus_tag="SF0333" /db_xref="GeneID:1027643" CDS complement(340811..341992) /gene="araJ" /locus_tag="SF0333" /note="Code: G; COG: COG2814" /codon_start=1 /transl_table=11 /product="MFS transport protein AraJ" /protein_id="NP_706284.2" /db_xref="GeneID:1027643" /translation="MKKVILSLALGTFGLGMAEFGIMSVLTELAHNVGISIPAAGHMI SYYALVVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSG FPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQECWRYTFL LIAVFNIAVMASVYFWVPDIRDEAKGNLREQFHFLRSPAPWLIFAATMFGNAGVFAWF SYVKPYMMFISGFSETAMTFIMMLVGLGMVLGNMLSGRISGRYSPLRIAAVTDFIIVL ALLMLFFCGGMKTTSLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFNL GSAVGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGRYKRQQEADSPVLAKPL G" misc_feature complement(340850..341992) /gene="araJ" /locus_tag="SF0333" /note="MFS transport protein AraJ; Provisional; Region: PRK10091" /db_xref="CDD:182234" gene complement(342118..345261) /gene="sbcC" /locus_tag="SF0334" /db_xref="GeneID:1027651" CDS complement(342118..345261) /gene="sbcC" /locus_tag="SF0334" /note="Code: L; COG: COG0419" /codon_start=1 /transl_table=11 /product="exonuclease SbcC" /protein_id="NP_706285.1" /db_xref="GeneID:1027651" /translation="MKILSLRLKNLNSLKGEWKIDFTREPFASNGLFAITGPTGAGKT TLLDAICLALYHETPRLSNVSQSQNDLMTRDTAECLAEVEFEVKGEAYRAFWSQNRAR NQPDGNLQVPRVELARCADGKILADKVKDKLELTATLTGLDYGRFTRSMLLSQGQFAA FLNAKPKERAELLEELTGTEIYGQISAMVFEQHKSARTELEKLQAQASGVTLLTPEQV QSLTASLQVLTDEEKQLITAQQQEQQSLNWLTRQDELQQEASRRQQALQQALAEEEKA QPQLAALSLAQPARNLRPHWERIAEHSAALAHIRQQIEEVNTRLQSTMALRASIRHHA AKQSAELQQQQQSLNTWLQEHDRFRQWNNELAGWRAQFSQQTSDREHLRQWQQQLTHA EQKLNALAAITLTLTADEVATALAQHAEQRPLRQRLVALHGQIVPQQKRLAQLMVTIQ NVTLEQTQRNVALNEMRQRYKEKTQQLADVKTICEQEARIKTLEAQRAQLQAGQPCPL CGSTSHPAVEAYQALEPGVNQSRLLALENEVKKLGEEGAALRGQLDALTKQLQRDENE AQSLRQDEQALTQQWQAVTASLNITLQPQDDIQPWLDAQDEHERQLRLLSQRHELQGQ IAAHNQQIIQYQQQIEQRQQQLLTALAGYALTLPQEDEEESWLATRQQEAQSWQQRQN ELTALQNRIQQLTPILETLPQSDDLPHSEETVALDNWRQVHEQCLALHSQQQTLQQQD VLAAQSLQKAQAQFDTALQASVFDDQQAFLAALMDEQTLTQLEQLKQNLENQRRQAQT LVTQTAETLAQHQQHRPDGLALTVTVEQIQQELAQTHQKLRENTTSQGEIRQQLKQDA DNRQQQQTLMQQIAQMTQQVEDWGYLNSLIGSKEGDKFRKFAQGLTLDNLVHLANQQL TRLHVRYLLQRKASEALEVEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSH KTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIPVQIKVK KINGLGYSKLESTFAVK" misc_feature complement(342121..345261) /gene="sbcC" /locus_tag="SF0334" /note="exonuclease subunit SbcC; Provisional; Region: PRK10246" /db_xref="CDD:182330" gene complement(345258..346460) /gene="sbcD" /locus_tag="SF0335" /db_xref="GeneID:1025983" CDS complement(345258..346460) /gene="sbcD" /locus_tag="SF0335" /note="Code: L; COG: COG0420" /codon_start=1 /transl_table=11 /product="exonuclease SbcD" /protein_id="NP_706286.1" /db_xref="GeneID:1025983" /translation="MRILHTSDWHLGQNFYSKSREAEHQAFLDWLLETAQTHQVDAII VAGDVFDTGSPPSYARTLYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDIMAFLNT TVVASAGHAPQILPRRDGTPGAVLCPIPFLRPRDIISSQAGLNGIEKQQHLLAAITDY YQQHYADACKLRGDQPLPIIATGHLTTVGSSKSDAVRDIYIGTLDAFPAQNFPPADYI ALGHIHRAQIIGGMEHVRYCGSPIPLSFDECGKSKYVHLVTFSNGKLESVENLNVPVT QPMAVLKGDLASITAQLEQWRDVSQEPPVWLDIEITTDEYLHDIQRKIQALTESLPVE VLLVRRSREQRERVLASQQRETLSELSVEEVFNRRLALEDLDESQQQRLQHLFTTTLR TLAGEHEA" misc_feature complement(345261..346460) /gene="sbcD" /locus_tag="SF0335" /note="exonuclease subunit SbcD; Provisional; Region: PRK10966" /db_xref="CDD:182871" gene 346650..347339 /gene="phoB" /locus_tag="SF0336" /db_xref="GeneID:1027627" CDS 346650..347339 /gene="phoB" /locus_tag="SF0336" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="transcriptional regulator PhoB" /protein_id="NP_706287.1" /db_xref="GeneID:1027627" /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNE PWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDY ITKPFSPKELVARIKAVMRRISPMAVEEVIKMQGLSLNPTSHRVMAGEEPLEMGPTEF KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTV RGTGYRFSTRF" misc_feature 346650..347336 /gene="phoB" /locus_tag="SF0336" /note="phosphate response regulator transcription factor PhoB; Region: PRK10161" /db_xref="CDD:182277" gene 347397..348692 /gene="phoR" /locus_tag="SF0337" /db_xref="GeneID:1025985" CDS 347397..348692 /gene="phoR" /locus_tag="SF0337" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="phosphate regulon sensor protein" /protein_id="NP_706288.1" /db_xref="GeneID:1025985" /translation="MLERLSWKRLVLELLLCCLPAFILGAFFGYLPWFLLASVTGLLI WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPEDNGQNILNLLRYPEFTQYLKTRD FSRPLNLVLNTGRHLEIRVMPYTHKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP LTVLQGYLEMMDEQPLEGAVREKALHTMREQTQRMEGLVKQLLTLSKIEAAPTQLLNE KVDVPMMLRVVEREAQTLSQKKQTFTFEIDNGLKVSGNEDQLRSAISNLVYNAVNHTP EGTHITVRWQRVPHGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSRQTGGSGLGLA IVKHAVNHHESRLNIESTVGKGTRFSFVIPERLIAKNSD" misc_feature 347397..348686 /gene="phoR" /locus_tag="SF0337" /note="phosphate regulon sensor histidine kinase PhoR; Region: phoR; PRK11006" /db_xref="CDD:182895" gene 349099..350418 /gene="brnQ" /locus_tag="SF0338" /db_xref="GeneID:1027530" CDS 349099..350418 /gene="brnQ" /locus_tag="SF0338" /note="Code: E; COG: COG1114" /codon_start=1 /transl_table=11 /product="branched-chain amino acid ABC transporter" /protein_id="NP_706289.1" /db_xref="GeneID:1027530" /translation="MTHQLRSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA AFGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGVLLATVCYLAVGPLFATPRT ATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV ILSVVAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV TEARLLTRYTVWAGLMAGVGLTLLYLALFCLGSDSASLVDQSANGAAILHAYVQHTFG GGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGLS QLIQISVPVLTAIYPPCIALVVLSFTRSWWHNSSRVIAPPMFISLLFGILDGIKASAF SDILPSWAQRLPLAEQGLAWLMPTVVMVVLAIIWDRAAGRQVTSSAH" misc_feature 349099..350415 /gene="brnQ" /locus_tag="SF0338" /note="branched-chain amino acid transporter carrier protein BrnQ; Region: PRK15433" /db_xref="CDD:185331" gene 350494..351867 /gene="proY" /locus_tag="SF0339" /db_xref="GeneID:1027638" CDS 350494..351867 /gene="proY" /locus_tag="SF0339" /note="Code: E; COG: COG1113" /codon_start=1 /transl_table=11 /product="permease" /protein_id="NP_706290.2" /db_xref="GeneID:1027638" /translation="MESKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV LLAYIIGGIAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV AIADVTAFGIYMGVLFPTVPHWIWVLSVVLIICAVNLMSVKVFGELEFWFSFFKVATI IIMIVAGFGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEII GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTAGSPFVLTFQH MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKIFSKTSRRGIPWVT VLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVK ALKFKVPGGVATTIGGLIFLLFIIGLIGYHPDTRISLYVGFAWIVVLLIGWMFKRRHD RQLAENQ" misc_feature 350494..351858 /gene="proY" /locus_tag="SF0339" /note="putative proline-specific permease; Provisional; Region: proY; PRK10580" /db_xref="CDD:182566" gene 352022..353839 /gene="malZ" /locus_tag="SF0340" /db_xref="GeneID:1027633" CDS 352022..353839 /gene="malZ" /locus_tag="SF0340" /note="Code: G; COG: COG0366" /codon_start=1 /transl_table=11 /product="maltodextrin glucosidase" /protein_id="NP_706291.1" /db_xref="GeneID:1027633" /translation="MMLNAWHLPVPPFVKQSKDQLLITLWLTGEDPPQRIMLRTEHDN EEMSVPMHKQRSQPQPGVTAWRAAIDLSSGQPRRRYSFKLLWHDRQRWFTPQGFSRMP PARLEQFAVDVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILR DWDEPVTAQAGGSTFYGGDLDGISEKLPYLKKLGVTALYLNPVFKAPSVHKYDTEDYR HVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHNLGTGGACHNSES PWRDWYSFSDDGTALDWLGYASLTKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGW RLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAM NYRGFTFPLWGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDT ARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKNDPFCRKPFPWQVEKQD TALFALYRRMIVLRKKSQALRRGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEASEV VLPASPFLNAVQWQCKEGHGQLTDGILALPAISATVWMN" misc_feature 352022..353812 /gene="malZ" /locus_tag="SF0340" /note="maltodextrin glucosidase; Provisional; Region: PRK10785" /db_xref="CDD:236759" gene complement(353844..354417) /locus_tag="SF0341" /pseudogene="unknown" /db_xref="GeneID:1027645" gene 354510..355580 /gene="queA" /locus_tag="SF0342" /db_xref="GeneID:1027666" CDS 354510..355580 /gene="queA" /locus_tag="SF0342" /note="Code: J; COG: COG0809" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine:tRNA ribosyltransferase-isomerase" /protein_id="NP_706293.1" /db_xref="GeneID:1027666" /translation="MRVTDFSFELPESLIAHYPMPERSSCRLLSLDGPTGALTHGTFT DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK PGAELLLGDDESINATMTARHGALFEVEFNDERSVLDILNSIGHMPLPPYIDRPDEDA DRELYQTVYSEKPGAVAAPTAGLHFDEPLLEKLRAKGVEMAFVTLHVGAGTFQPVRVD TIEDHIMHSEYAEVPQDVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKNDLIEPF FDDTQIFIYPGFQYKVVDALVTNFHLPESTLIMLVSAFAGYQHTMNAYKAAVEEKYRF FSYGDAMFITYNPQAINERVGE" misc_feature 354510..355541 /gene="queA" /locus_tag="SF0342" /note="S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional; Region: queA; PRK00147" /db_xref="CDD:234666" gene 355635..356762 /gene="tgt" /locus_tag="SF0343" /db_xref="GeneID:1027667" CDS 355635..356762 /gene="tgt" /locus_tag="SF0343" /note="Code: J; COG: COG0343" /codon_start=1 /transl_table=11 /product="queuine tRNA-ribosyltransferase" /protein_id="NP_706294.1" /db_xref="GeneID:1027667" /translation="MKFELDTTDGRARRGRLVFDRGVVETPCFMPVGTYGTVKGMTPE EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME MSLRWAKRSRERFDSLGNKNALFGIIQGSIYEDLRDISVKGLVDIGFDGYAVGGLAVG EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH LFVTDGVVKIRNAKYKSDTGPLDPECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN LRYYQRLMAGLRKAIEEGKLESFVTDFYQRQGREVPPLNVD" misc_feature 355635..356738 /gene="tgt" /locus_tag="SF0343" /note="Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343" /db_xref="CDD:440112" gene 356785..357117 /gene="yajC" /locus_tag="SF0344" /db_xref="GeneID:1027685" CDS 356785..357117 /gene="yajC" /locus_tag="SF0344" /note="Code: N; COG: COG1862" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit YajC" /protein_id="NP_706295.1" /db_xref="GeneID:1027685" /translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQK RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAENGYIAIALNDTTEVVIKRDFVAAVL PKGTMKAL" misc_feature 356791..357114 /gene="yajC" /locus_tag="SF0344" /note="preprotein translocase subunit YajC; Validated; Region: yajC; PRK05585" /db_xref="CDD:235518" gene 357145..358992 /gene="secD" /locus_tag="SF0345" /db_xref="GeneID:1027665" CDS 357145..358992 /gene="secD" /locus_tag="SF0345" /note="Code: N; COG: COG0342" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecD" /protein_id="NP_706296.1" /db_xref="GeneID:1027665" /translation="MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVA ASEQTLIQVQKTLQEEKITAKSVALEEGAILARFDSTDTQLRAREALMGVMGDKYVVA LNLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLRE KGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHPDLVISSQGSNQLRAVMSDAR LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT ATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV INIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI EQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIA GIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVII LYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI" misc_feature 357148..357453 /gene="secD" /locus_tag="SF0345" /note="SecD export protein N-terminal TM region; Region: SecD-TM1; pfam13721" /db_xref="CDD:463968" misc_feature 357166..358989 /gene="secD" /locus_tag="SF0345" /note="preprotein translocase subunit SecD; Reviewed; Region: secD; PRK05812" /db_xref="CDD:235615" gene 359003..359974 /gene="secF" /locus_tag="SF0346" /db_xref="GeneID:1027644" CDS 359003..359974 /gene="secF" /locus_tag="SF0346" /note="Code: N; COG: COG0341" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecF" /protein_id="NP_706297.2" /db_xref="GeneID:1027644" /translation="MAQEYTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVR GFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAE GETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVY VGFRFEWRLAAGVVIALTHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLMVILMLYLFGGPVLEGFSLT MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP" misc_feature 359027..359908 /gene="secF" /locus_tag="SF0346" /note="Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport]; Region: SecF; COG0341" /db_xref="CDD:440110" gene 360103..360450 /gene="yajD" /locus_tag="SF0347" /db_xref="GeneID:1027670" CDS 360103..360450 /gene="yajD" /locus_tag="SF0347" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706298.1" /db_xref="GeneID:1027670" /translation="MAIIPKNYARLESGYREKALKIYPWVCGRCSREFVYSNLRELTV HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGTTVIAGEDAQKDVGEAKYN PFADLKAMMNKKK" misc_feature 360103..360441 /gene="yajD" /locus_tag="SF0347" /note="HNH nuclease family protein; Region: PRK11295" /db_xref="CDD:236895" misc_feature order(360229..360231,360235..360243,360247..360249, 360280..360285,360295..360300,360307..360309, 360319..360321) /gene="yajD" /locus_tag="SF0347" /note="active site" /db_xref="CDD:238038" gene complement(360627..361511) /gene="tsx" /locus_tag="SF0348" /db_xref="GeneID:1027664" CDS complement(360627..361511) /gene="tsx" /locus_tag="SF0348" /note="Code: M; COG: COG3248" /codon_start=1 /transl_table=11 /product="nucleoside-specific channel-forming protein Tsx" /protein_id="NP_706299.2" /db_xref="GeneID:1027664" /translation="MKKTLLAAGAVLALSSSFTVNAAENDKPQYLSDWWHQSVNVVGS YHTRFGPQIRNDTYLEYEAFAKKDWFDFYGYADAPVFFGGNSDAKGIWNHGSPLFMEI EPRFSIDKLTNTDLSFGPFKEWYFANNYIYDMGRNKDGRQSTWYMGLGTDIDTGLPMS LSMNVYAKYQWQNYGAANENEWDGYRFKIKYFVPITDLWGGQLSYIGFTNFDWGSDLG DDSGNAINGIKTRTNNSIASSHILALNYDHWHYSVVARYWHDGGQWNDDAELNFGNGN FNVRSTGWGGYLVVGYNF" misc_feature complement(360630..361511) /gene="tsx" /locus_tag="SF0348" /note="nucleoside-specific channel-forming protein Tsx; Provisional; Region: PRK15106" /db_xref="CDD:237911" gene complement(361809..362408) /gene="yajI" /locus_tag="SF0349" /db_xref="GeneID:1027637" CDS complement(361809..362408) /gene="yajI" /locus_tag="SF0349" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706300.3" /db_xref="GeneID:1027637" /translation="MLSLLLPSTIRLIATRKGRPMNTNVFRLLLLGSLFSLSACVQQS EVRQMKHSVSTLNQEMTQLNQETVKITQQNRLNAKSSSGVYLLPGAKTPARLESQIGT LRMSLVNITPDTDGTTLTLRIQGESNDPLPAFSGTVEYGQIQGTIDNFQEINVQNQLI NAPASVLAPSDVDIPLQLKGISVDQLGFVRIHDIQPVMQ" misc_feature complement(361812..362348) /gene="yajI" /locus_tag="SF0349" /note="hypothetical protein; Provisional; Region: PRK11530" /db_xref="CDD:236923" gene 362499..362948 /gene="nrdR" /locus_tag="SF0350" /db_xref="GeneID:1027679" CDS 362499..362948 /gene="nrdR" /locus_tag="SF0350" /note="Code: K; COG: COG1327" /codon_start=1 /transl_table=11 /product="transcriptional regulator NrdR" /protein_id="NP_706301.1" /db_xref="GeneID:1027679" /translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVA ELVMPRVVKSNDVREPFNEEKLRSGMLRALEKRPVSSDYVEMAINHIKSQLRATGERE VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKEFGEEIARLED" misc_feature 362499..362945 /gene="nrdR" /locus_tag="SF0350" /note="Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains [Transcription]; Region: NrdR; COG1327" /db_xref="CDD:440938" gene 362952..364055 /gene="ribD" /locus_tag="SF0351" /db_xref="GeneID:1027648" CDS 362952..364055 /gene="ribD" /locus_tag="SF0351" /note="Code: H; COG: COG1985" /codon_start=1 /transl_table=11 /product="bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase" /protein_id="NP_706302.1" /db_xref="GeneID:1027648" /translation="MQDEYYMARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQ RAGEPHAEVHALRMAGEKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQD PNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGR TAMASGESQWITSPQARRDVQRQRAQSHAILTSSATVLADDPALTVRWSELDEQTQAL YPQQNLRQPVRIVIDSQNRVTPEHRIVQQPGETWFARTQEDSREWPETVRTLLIPEHK GHLDLVVLMMQLGKQQINSIWVEAGPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLC SLPGLEKLADAPQFKFKEIRHVGPDVCLHLVGA" misc_feature 362952..364052 /gene="ribD" /locus_tag="SF0351" /note="bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD; Region: ribD; PRK10786" /db_xref="CDD:182729" gene 364144..364614 /gene="ribH" /locus_tag="SF0352" /db_xref="GeneID:1027531" CDS 364144..364614 /gene="ribH" /locus_tag="SF0352" /note="Code: H; COG: COG0054" /codon_start=1 /transl_table=11 /product="6,7-dimethyl-8-ribityllumazine synthase" /protein_id="NP_706303.2" /db_xref="GeneID:1027531" /translation="MNIIEANVATPDARVAITIARFNNFINDSLLEGAIDALKRIGQV KDENITVVWVPGAYELPLAAGALAKTGKYDAVIALGTVIRGGTAHFEYVAGGASNGLA HVAQDSEIPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA" misc_feature 364150..364608 /gene="ribH" /locus_tag="SF0352" /note="6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain) [Coenzyme transport and metabolism]; Region: RibE; COG0054" /db_xref="CDD:439824" gene 364634..365053 /gene="nusB" /locus_tag="SF0353" /db_xref="GeneID:1027676" CDS 364634..365053 /gene="nusB" /locus_tag="SF0353" /note="Code: K; COG: COG0781" /codon_start=1 /transl_table=11 /product="transcription antitermination protein NusB" /protein_id="NP_706304.1" /db_xref="GeneID:1027676" /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD VLYFRELLAGVATNTAYLDGLMKPYLSRLLEELGQVEKAVLRIALYELSKRSDVPYKV AINEAIELAKSFGAEDSHKFVNGVLDKAAPVIRPNKK" misc_feature 364664..365050 /gene="nusB" /locus_tag="SF0353" /note="transcription antitermination factor NusB; Region: nusB; PRK00202" /db_xref="CDD:234686" gene 365131..366108 /gene="thiL" /locus_tag="SF0354" /db_xref="GeneID:1027673" CDS 365131..366108 /gene="thiL" /locus_tag="SF0354" /note="Code: H; COG: COG0611" /codon_start=1 /transl_table=11 /product="thiamine monophosphate kinase" /protein_id="NP_706305.1" /db_xref="GeneID:1027673" /translation="MACGEFSLIARYFDRVRSSRLDVELGIGDDCALLNIPEKQTLAI STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPDVDEAWLES FSDSLFDLLNYYDMQLIGGDTTRGPLSMTLGIHGFVPMGRALTRSGAKPGDWIYVTGT PGDSAAGLAILQNRLQVADAKDADYLIKRHLRPSPRILQGQALRDLANSAIDLSDGLI SDLGHIVKASDCGARIDLALLPFSDALSRHVEPEQALRWALSGGEDYELCFTVPELNR GALDVALGHLGVPFTCIGQMTADIEGLCFIRDGEPVTFDWKGYDHFVTP" misc_feature 365131..366096 /gene="thiL" /locus_tag="SF0354" /note="thiamine monophosphate kinase; Provisional; Region: PRK05731" /db_xref="CDD:235583" gene 366086..366604 /gene="pgpA" /locus_tag="SF0355" /db_xref="GeneID:1027681" CDS 366086..366604 /gene="pgpA" /locus_tag="SF0355" /note="Code: I; COG: COG1267" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphatase A" /protein_id="NP_706306.2" /db_xref="GeneID:1027681" /translation="MTILSRHKDVAKSRLKMSNPWHLLAVGFGSGLSPIVPGSMGSLA AIPFWYLMTFLPWQLYSLVVMLGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL MALPTNDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY FIGHHWPLGILS" misc_feature 366107..366598 /gene="pgpA" /locus_tag="SF0355" /note="phosphatidylglycerophosphatase A; Provisional; Region: PRK11068" /db_xref="CDD:182942" misc_feature order(366155..366157,366221..366223,366272..366274, 366281..366286,366293..366298,366344..366346, 366353..366361,366368..366373,366377..366382, 366389..366391,366422..366430,366434..366442, 366446..366451,366455..366460,366569..366571) /gene="pgpA" /locus_tag="SF0355" /note="tetramer interfaces [polypeptide binding]; other site" /db_xref="CDD:133477" misc_feature order(366353..366355,366362..366367,366515..366517, 366524..366529) /gene="pgpA" /locus_tag="SF0355" /note="binuclear metal-binding site [ion binding]; other site" /db_xref="CDD:133477" gene complement(366715..367632) /locus_tag="SF0356" /db_xref="GeneID:1027663" CDS complement(366715..367632) /locus_tag="SF0356" /note="Code: C; COG: COG0667" /codon_start=1 /transl_table=11 /product="reductase" /protein_id="NP_706307.1" /db_xref="GeneID:1027663" /translation="MQYNPLGKTDLRVSRLCLGCMTFGEPDRGNHAWTLPEESSRPII KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARREDVVVATKVFHRVGDLPEGLSR AQILRSINDSLRRLGMDYVDILQIHRWDYNTPIEETLEALNDVVKAGKARYIGASSMH ASQFAQALELQKQHCWAQFVSMQDHYNLIYREEEREMLPLCYQEGVAVIPWSPLARGR LTRPWGETTARLVSDEVGKNLYKESDENDAQIAERLTGVSEELGATRAQVALAWLLSK PGIAAPIIGTSREEQLDELLNAVDITLKP" misc_feature complement(366718..367629) /locus_tag="SF0356" /note="Escherichia coli YajO and similar proteins; Region: AKR_EcYajO-like; cd19079" /db_xref="CDD:381305" misc_feature complement(order(366748..366753,366760..366762, 366769..366786,366835..366837,366982..367002, 367084..367086,367159..367164,367249..367254, 367369..367371,367450..367452,367465..367467, 367570..367578)) /locus_tag="SF0356" /note="putative active site [active]" /db_xref="CDD:381305" misc_feature complement(order(367252..367254,367369..367371, 367450..367452,367465..367467)) /locus_tag="SF0356" /note="catalytic tetrad [active]" /db_xref="CDD:381305" gene complement(367687..369549) /gene="dxs" /locus_tag="SF0357" /db_xref="GeneID:1027687" CDS complement(367687..369549) /gene="dxs" /locus_tag="SF0357" /note="Code: HI; COG: COG1154" /codon_start=1 /transl_table=11 /product="1-deoxy-D-xylulose-5-phosphate synthase" /protein_id="NP_706308.1" /db_xref="GeneID:1027687" /translation="MSFDIAKYPTLALVDSTQELRLLPNESLPKLCDELRRYLLDSVS RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKNRRTVCVIGDGAITAGMA FEAMNHAGDIRPDMLVVLNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMRDLKGPQ FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPSYSKIFGDWLCETAA KDNKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPIVAIY STFLQRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGAFDLSYLRCIPEMVIMT PSDENECRQMLYTGYHYNDGPSAVRYPRGNAVGVELTPLEKLPIGKGIVKRRGEKLVI LNFGTLMPETAKVAESLNATLVDMRFVKPLDEALILEMAASHEALVTVEENAIMGGAG SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEMRAELGLDAAGMEAKIKAWLA" misc_feature complement(367690..369531) /gene="dxs" /locus_tag="SF0357" /note="Deoxyxylulose-5-phosphate synthase [Coenzyme transport and metabolism, Lipid transport and metabolism]; Region: Dxs; COG1154" /db_xref="CDD:440768" gene complement(369574..370473) /gene="ispA" /locus_tag="SF0358" /db_xref="GeneID:1027686" CDS complement(369574..370473) /gene="ispA" /locus_tag="SF0358" /note="Code: H; COG: COG0142" /codon_start=1 /transl_table=11 /product="geranyltranstransferase" /protein_id="NP_706309.1" /db_xref="GeneID:1027686" /translation="MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGG KRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH VKFGEANAILAGDALQTLAFSILSDANMPEVSDRDRISMISELASASGIAGMCGGQAL DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLA FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQALKQ LAEQSLDTSALEALADYIIQRNK" misc_feature complement(369577..370473) /gene="ispA" /locus_tag="SF0358" /note="(2E,6E)-farnesyl diphosphate synthase; Region: PRK10581" /db_xref="CDD:182567" misc_feature complement(order(369733..369735,369748..369750, 369763..369765,369793..369795,369802..369807, 369919..369921,369928..369933,369991..369993, 370000..370002,370186..370191,370225..370227, 370231..370239,370246..370248)) /gene="ispA" /locus_tag="SF0358" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173833" misc_feature complement(order(369727..369741,369748..369765, 369781..369786,370156..370194,370222..370224)) /gene="ispA" /locus_tag="SF0358" /note="active site lid residues [active]" /db_xref="CDD:173833" misc_feature complement(order(369733..369735,369748..369750, 369763..369765,369793..369795,369802..369807)) /gene="ispA" /locus_tag="SF0358" /note="aspartate-rich region 2; other site" /db_xref="CDD:173833" gene complement(370473..370715) /gene="xseB" /locus_tag="SF0359" /db_xref="GeneID:1027660" CDS complement(370473..370715) /gene="xseB" /locus_tag="SF0359" /note="Code: L; COG: COG1722" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII small subunit" /protein_id="NP_706310.1" /db_xref="GeneID:1027660" /translation="MPKKNEAPASFEKALSELEQIVTRLESGDLPLEEALNEFERGVQ LARQGQAKLQQAEQRVQILLSDNEDASLTPFTPDNE" misc_feature complement(370482..370715) /gene="xseB" /locus_tag="SF0359" /note="exodeoxyribonuclease VII small subunit; Provisional; Region: PRK00977" /db_xref="CDD:179195" gene 370921..372370 /locus_tag="SF0360" /pseudogene="unknown" /db_xref="GeneID:1027662" gene complement(372424..373020) /gene="thiJ" /locus_tag="SF0361" /db_xref="GeneID:1027683" CDS complement(372424..373020) /gene="thiJ" /locus_tag="SF0361" /note="Code: R; COG: COG0693" /codon_start=1 /transl_table=11 /product="oxidative-stress-resistance chaperone" /protein_id="NP_706312.1" /db_xref="GeneID:1027683" /translation="MNMSASALVCLAPGSEETEAVTTINLLVRGGIKVTTASVDSDGN LAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGTECFRDSTLLVETVKQFHRSGR IVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPAEQWQDKRVVWDARVKLLTSQGP GTAIDFGLKIIDLLVGREKAHEVASQLVMAAGIYNYYE" misc_feature complement(372427..373014) /gene="thiJ" /locus_tag="SF0361" /note="protein deglycase YajL; Region: PRK11574" /db_xref="CDD:183210" misc_feature complement(372697..372699) /gene="thiJ" /locus_tag="SF0361" /note="conserved cys residue [active]" /db_xref="CDD:153229" gene complement(372977..373888) /gene="apbA" /locus_tag="SF0362" /db_xref="GeneID:1027702" CDS complement(372977..373888) /gene="apbA" /locus_tag="SF0362" /note="Code: H; COG: COG1893" /codon_start=1 /transl_table=11 /product="2-dehydropantoate 2-reductase" /protein_id="NP_706313.1" /db_xref="GeneID:1027702" /translation="MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVET DGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAVKSLASTLPVTTPILLIHNGMGT IEELQNIQQPLLMGTTTHAARRDGNVIIHVANGITHIGPARQQDGDYSYLADILQTVL PDVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIERE GHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHTEIDYINGFLLRRARAHGIAVP ENTRLFEMVKRKESEYERIGTGLPRPW" misc_feature complement(373004..373888) /gene="apbA" /locus_tag="SF0362" /note="2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522" /db_xref="CDD:235821" gene 374056..374547 /gene="yajQ" /locus_tag="SF0363" /db_xref="GeneID:1027675" CDS 374056..374547 /gene="yajQ" /locus_tag="SF0363" /note="Code: S; COG: COG1666" /codon_start=1 /transl_table=11 /product="nucleotide-binding protein" /protein_id="NP_706314.2" /db_xref="GeneID:1027675" /translation="MPSFDIVSEVDLQEARNAVDNASREVESRFDFRNVEYSFELNDA SKTIKVLSESDFQVNQLLDILRAKLLKRGIEGSSLDVPENIVHSGKTWFVEAKLKQGI ESATQKKIVKMIKDSKLKVQAQIQGDEIRVTGKSRDDLQAVMAMVRGGDLGQPFQFKN FRD" misc_feature 374056..374544 /gene="yajQ" /locus_tag="SF0363" /note="putative nucleotide-binding protein; Reviewed; Region: PRK05412" /db_xref="CDD:180061" gene complement(374607..376337) /locus_tag="SF0364" /db_xref="GeneID:1027671" CDS complement(374607..376337) /locus_tag="SF0364" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706315.1" /db_xref="GeneID:1027671" /translation="MKAKSTLLLMILSVFYSHQVLSSEPTQPDVYSVVEKKLNSALPL EENTTFRSQAEWFNLQYELLVSGYPERAYNLLSKLETESKNAKYYLDLTASRVAEEEA PETALTFLSKIGLNKPATLTSFESYINSWIKSKQPEKAMQLLSLDENALNYYLPTVLV AYQIVPDKAISIYNSVYGDNVVIPYQQVTMLLTVAEGYQTKGDIKNAIHYADKALNMF DKAIAVDSSRESHYSDEYLKLMNIYAANGNKEKAVVLSQRLHKAITESQSNYLSTLEG ILLFYRNNDMQQDYQNSLSNYIVFIDKIFAFSPSTRSELSLINLLNSLNEVELMRKRL AFLMTAPEYACYNSQYCYEDKVSALKILYRHHDNELMDKYFTTLLKEISNQPLEDWDI IISNTGEKFSEVGLTKYAQHLASFAEEFYIKEQKSHSESEMRGLFSSLAELYSFGNDT ASANRVFHQHVPAFNTDHMIQYFINAKEWNNARELLIKEEMLGMHNLILLENICMQKN AECMAHITFTLNKLTTQPAITKIDSVGNEQLYQIGKIYHKLEIKPEPEQQVLIQSLYD RASGSASATQ" misc_feature complement(375444..376172) /locus_tag="SF0364" /note="Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Region: LapB; COG2956" /db_xref="CDD:442196" gene complement(376390..378543) /locus_tag="SF0365" /db_xref="GeneID:1027661" CDS complement(376390..378543) /locus_tag="SF0365" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706316.2" /db_xref="GeneID:1027661" /translation="MYKSLFTIIILLYSASSYAKSESPPASTITFIAQIDHVELNKTA LSHDMKLVLADRFYFKTSNPCETNSISARPESMDITDKAYADKLKKLETPFLDDRYFF MTINQCDGNGTPMLTDIKVCTTELCGAEYTKKMSTVWLDETLKPTAKRLAIYFIQSPL PYDEEKKQWKVTGWYISSTDNQSSTKQIAFEGYTDTDNLSDSKFISSFKSWFESGKIK NIANYNPKGERDGKYESYYNSNGNVYESLSFSNGLINGEFITYYENGAIESKRHFNND KIKDGECPHFYEDGKIKQQHSYLNSKLDGPAYEYYPDGKLMQENFYQQSVLIGNDTSY YQSGKISSIHNRNSRGQYDGANERYSEEGKLLSKSVYKDGKQISVQTWYENGQKEEEK HFDEQGQLNGLVKQWYKNGNLAKSQNYKHDILDGNSEEWYENGIPESLYPYKNGKTDG IAKSWNKYGKLTYSIEYKNGVENGAYRNWSKNTGKLTKETLYVNGIRQGVEKEFNDRT GKLLTSTQYVNNKRHGTEETYDQNGIKYITCYQNDQKLSSLDNPTQIKDNATTGDSSA QFALGKYEFICANIDEGIKWLTKSAEQKNTDAIYFLATAYKGNGIPANNEKYLAYLQQ AATLGSSNAQAEIGYLYLIGKELPQNLPDAGVWFKKAAAQGNFAAHFYLGRMYQNGDG VERNMEKARFHLSNAAEGGIEPALKALNELEHQTK" misc_feature complement(377560..378036) /locus_tag="SF0365" /note="Antitoxin component YwqK of the YwqJK toxin-antitoxin module [Defense mechanisms]; Region: YwqK; COG2849" /db_xref="CDD:442097" misc_feature complement(377053..377544) /locus_tag="SF0365" /note="Antitoxin component YwqK of the YwqJK toxin-antitoxin module [Defense mechanisms]; Region: YwqK; COG2849" /db_xref="CDD:442097" misc_feature complement(376408..>376869) /locus_tag="SF0365" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature complement(376723..376809) /locus_tag="SF0365" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(376615..376704) /locus_tag="SF0365" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(376507..376596) /locus_tag="SF0365" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" mobile_element 378639..379406 /mobile_element_type="insertion sequence:IS1" gene 378888..379391 /gene="insB" /locus_tag="SF0366" /db_xref="GeneID:1027672" CDS 378888..379391 /gene="insB" /locus_tag="SF0366" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706317.1" /db_xref="GeneID:1027672" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 378996..379388 /gene="insB" /locus_tag="SF0366" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(379402..379988) /locus_tag="SF0367" /pseudogene="unknown" /db_xref="GeneID:1027668" gene complement(379972..380283) /locus_tag="SF0368" /db_xref="GeneID:1027654" CDS complement(379972..380283) /locus_tag="SF0368" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706319.2" /db_xref="GeneID:1027654" /translation="MPGKTAALYDVDKTLKNARVELKTSPDAKNKLREAAQAVGVDLS AFILSAAMERAESVLDNQRRRELSNQSWELMNQLIAEPAQPTLALKALMKRKNSDGRQ A" misc_feature complement(379996..380244) /locus_tag="SF0368" /note="Uncharacterized conserved protein, DUF1778 family [Function unknown]; Region: COG4453" /db_xref="CDD:443551" gene complement(380467..381354) /gene="cyoE" /locus_tag="SF0369" /db_xref="GeneID:1025986" CDS complement(380467..381354) /gene="cyoE" /locus_tag="SF0369" /note="Code: H; COG: COG0109" /codon_start=1 /transl_table=11 /product="protoheme IX farnesyltransferase" /protein_id="NP_706320.2" /db_xref="GeneID:1025986" /translation="MFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLVG VSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPAVSLVYATLLGIAGFMLLWF GANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPSVIGYCAVTGEFDSG AAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAVA TLMLSLGGYAGYKYLVVAAAVSVWWLGMALRGYKVADDRIWARKLFGFSIIAITALSV MMSVDFMVPDSHTLLAAVW" misc_feature complement(380500..381354) /gene="cyoE" /locus_tag="SF0369" /note="protoheme IX farnesyltransferase; Provisional; Region: PRK04375" /db_xref="CDD:235293" gene complement(381369..381698) /gene="cyoD" /locus_tag="SF0370" /db_xref="GeneID:1027659" CDS complement(381369..381698) /gene="cyoD" /locus_tag="SF0370" /note="Code: C; COG: COG3125" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit IV" /protein_id="NP_706321.1" /db_xref="GeneID:1027659" /translation="MSHSTDHSGASHGSVKTYMTGFILSIILTVIPFWMVMTGAASPA VILGTILAMAVVQVLVHLVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSIWIMWNL NYNMMMH" misc_feature complement(381372..381698) /gene="cyoD" /locus_tag="SF0370" /note="cytochrome o ubiquinol oxidase subunit IV; Provisional; Region: PRK10582" /db_xref="CDD:182568" gene complement(381698..382312) /gene="cyoC" /locus_tag="SF0371" /db_xref="GeneID:1027694" CDS complement(381698..382312) /gene="cyoC" /locus_tag="SF0371" /note="Code: C; COG: COG1845" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit III" /protein_id="NP_706322.1" /db_xref="GeneID:1027694" /translation="MATDTLTHATAHAHEHGHHDAGGTKIFGFWIYLMSDCILFSILF ATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMYKNNKSQVISWL ALTWLFGAGFIGMEIYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL MVQIARRGLTSTNRTRIMCLSLFWHFLDVVWICVFTVVYLMGAM" misc_feature complement(381701..382312) /gene="cyoC" /locus_tag="SF0371" /note="cytochrome o ubiquinol oxidase subunit III; Provisional; Region: PRK10663" /db_xref="CDD:182628" misc_feature complement(order(382175..382177,382184..382189, 382196..382201,382220..382222,382229..382231, 382241..382246)) /gene="cyoC" /locus_tag="SF0371" /note="Subunit I/III interface [polypeptide binding]; other site" /db_xref="CDD:239214" misc_feature complement(order(381758..381760,381779..381781, 382064..382069,382079..382081,382088..382090, 382199..382201,382223..382225)) /gene="cyoC" /locus_tag="SF0371" /note="Subunit III/IV interface [polypeptide binding]; other site" /db_xref="CDD:239214" gene complement(382302..384293) /gene="cyoB" /locus_tag="SF0372" /pseudo /db_xref="GeneID:1027699" misc_feature complement(382302..384293) /gene="cyoB" /locus_tag="SF0372" /note="Similar to Escherichia coli K12 cytochrome o ubiquinol oxidase subunit I gi: 1786634 (664 aa). BLAST with identity of 99% in 663 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(384315..384812) /gene="cyoA" /locus_tag="SF0373" /pseudo /db_xref="GeneID:1027708" misc_feature complement(384315..384812) /gene="cyoA" /locus_tag="SF0373" /note="Similar to Escherichia coli K12 cytochrome o ubiquinol oxidase subunit II gi: 1786635 (316 aa). BLAST with identity of 98% in 165 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element 384813..385660 /note="partial" /mobile_element_type="insertion sequence:ISSfl4" mobile_element 385653..386881 /note="partial" /mobile_element_type="insertion sequence:ISSfl4" gene complement(385781..386128) /locus_tag="SF0375" /db_xref="GeneID:1027704" CDS complement(385781..386128) /locus_tag="SF0375" /note="Code: L; COG: COG3436" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 ORF2" /protein_id="NP_706324.1" /db_xref="GeneID:1027704" /translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF VFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAW QHPKRTERPGIRI" misc_feature complement(385832..386101) /locus_tag="SF0375" /note="IS66 family insertion sequence element accessory protein TnpB; Region: IS66_TnpB; NF033819" /db_xref="CDD:411392" gene complement(386125..386799) /locus_tag="SF0376" /db_xref="GeneID:1027669" CDS complement(386125..386799) /locus_tag="SF0376" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 transposase" /protein_id="NP_706325.1" /db_xref="GeneID:1027669" /translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE FKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALT DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE MKGGIR" misc_feature complement(386182..386766) /locus_tag="SF0376" /note="IS66-like element accessory protein TnpA; Region: IS66_access_TnpA; NF038385" /db_xref="CDD:439678" gene complement(387169..388644) /gene="ampG" /locus_tag="SF0377" /db_xref="GeneID:1027700" CDS complement(387169..388644) /gene="ampG" /locus_tag="SF0377" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="muropeptide transporter" /protein_id="NP_706326.1" /db_xref="GeneID:1027700" /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFFGRRRGWLLATQILLLVAIAAMGFLE PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG GLALWLADKWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPVPKTLEQAVVAPLRDF FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKHLYSMGAAVFFENLCGGMGT SAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWSTFYLFSVAAA VPGLILLLVCRQTLEYTRVNDNFISRTEYPAGYAFAMWTLAAGVSLLAVWLLLLTMDA LDLTHFSFLPALLEVGVLVALSGVVLGGLLDYLALRKTHLT" misc_feature complement(387175..388644) /gene="ampG" /locus_tag="SF0377" /note="muropeptide MFS transporter AmpG; Region: ampG; PRK11010" /db_xref="CDD:182898" misc_feature complement(order(387538..387540,387547..387552, 387559..387564,387571..387573,387619..387621, 387631..387633,387643..387648,387817..387819, 387829..387831,387916..387918,387925..387933, 387940..387945,387952..387954,388189..388191, 388198..388203,388210..388212,388258..388260, 388267..388275,388279..388284,388459..388461, 388549..388551,388558..388563,388570..388575)) /gene="ampG" /locus_tag="SF0377" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:341039" gene complement(388688..389368) /gene="yajG" /locus_tag="SF0378" /db_xref="GeneID:1027705" CDS complement(388688..389368) /gene="yajG" /locus_tag="SF0378" /note="Code: M; COG: COG3056" /codon_start=1 /transl_table=11 /product="polymerase/proteinase" /protein_id="NP_706327.4" /db_xref="GeneID:1027705" /translation="MMNLHALPTSPRRWQCYDGGNFYQTRLRVSESPNMFKKILFPLV ALFMLAGCAKPPTTIEVSPTITLPQQDPSLMGVTVSINGADQRTDQALAKVTRDNQIV TLTASRALRFLLQEVLEKQMTARGYMVGPNGPVNLQIIVSQLYADVSQGNVRYNIATK ADIAIIATAQNGNKMTKNYRASYNVEGAFQASNKNIADAVNSVLTDTIADMSQDTSIH EFIKQNAR" misc_feature complement(388691..389266) /gene="yajG" /locus_tag="SF0378" /note="hypothetical protein; Provisional; Region: PRK11627" /db_xref="CDD:183242" gene 389538..389888 /gene="bolA" /locus_tag="SF0379" /db_xref="GeneID:1027691" CDS 389538..389888 /gene="bolA" /locus_tag="SF0379" /note="Code: T; COG: COG0271" /codon_start=1 /transl_table=11 /product="murein genes regulator" /protein_id="NP_706328.3" /db_xref="GeneID:1027691" /translation="MTSQRCRRRYFMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPA GSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALALHTYTIKEWEGLQDT VFASPPCRGAGSIA" misc_feature 389571..389885 /gene="bolA" /locus_tag="SF0379" /note="transcriptional regulator BolA; Provisional; Region: PRK11628" /db_xref="CDD:183243" gene 389897..390085 /locus_tag="SF0380" /db_xref="GeneID:1027709" CDS 389897..390085 /locus_tag="SF0380" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706329.2" /db_xref="GeneID:1027709" /translation="MQLSALFQYVAKDFMKNGLRAVLFCLDFALFAQHSDENCPGIVK KYATARNNRSRLIKVMPL" gene 390232..391530 /gene="tig" /locus_tag="SF0381" /db_xref="GeneID:1027715" CDS 390232..391530 /gene="tig" /locus_tag="SF0381" /note="Code: O; COG: COG0544" /codon_start=1 /transl_table=11 /product="trigger factor" /protein_id="NP_706330.1" /db_xref="GeneID:1027715" /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGED FTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEA EDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFP EEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVEDGSVEGLRAEVRKNMER ELKSAIRNRVKSQAIEGLVKANDIDVPAALIDSEIDVLRRQAAQRFGGNEKQALELPR ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK ELMDNMRNVALEEQAVEAVLAKAKVTEKETTFNELMNQQA" misc_feature 390232..391494 /gene="tig" /locus_tag="SF0381" /note="FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]; Region: Tig; COG0544" /db_xref="CDD:440310" gene 391777..392400 /gene="clpP" /locus_tag="SF0382" /db_xref="GeneID:1027696" CDS 391777..392400 /gene="clpP" /locus_tag="SF0382" /note="Code: NO; COG: COG0740" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease proteolytic subunit" /protein_id="NP_706331.2" /db_xref="GeneID:1027696" /translation="MSYSGERDNFAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK GRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN" misc_feature 391810..392397 /gene="clpP" /locus_tag="SF0382" /note="ATP-dependent Clp protease proteolytic subunit; Reviewed; Region: clpP; PRK00277" /db_xref="CDD:178955" misc_feature order(391906..391908,391912..391914,391939..391944, 391951..391956,391963..391965,392008..392010, 392029..392031,392041..392043,392050..392052, 392059..392064,392074..392076,392098..392100, 392164..392166,392170..392172,392188..392199, 392239..392241,392248..392250,392254..392256, 392260..392262,392329..392331,392335..392337) /gene="clpP" /locus_tag="SF0382" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132928" misc_feature order(392107..392109,392182..392184,392329..392331) /gene="clpP" /locus_tag="SF0382" /note="active site residues [active]" /db_xref="CDD:132928" gene 392526..393800 /gene="clpX" /locus_tag="SF0383" /db_xref="GeneID:1027698" CDS 392526..393800 /gene="clpX" /locus_tag="SF0383" /note="Code: O; COG: COG1219" /codon_start=1 /transl_table=11 /product="ATP-dependent protease ATP-binding subunit ClpX" /protein_id="NP_706332.1" /db_xref="GeneID:1027698" /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC NDIIREEIKEVAPHRERSALPTPHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKA KSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALT KQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSMED VEKVVIDESVIDGQSKPLLIYGKPEAQQASGE" misc_feature 392526..393764 /gene="clpX" /locus_tag="SF0383" /note="ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein turnover, chaperones]; Region: ClpX; COG1219" /db_xref="CDD:440832" gene 393988..396342 /gene="lon" /locus_tag="SF0384" /db_xref="GeneID:1027697" CDS 393988..396342 /gene="lon" /locus_tag="SF0384" /note="Code: O; COG: COG0466" /codon_start=1 /transl_table=11 /product="DNA-binding ATP-dependent protease La" /protein_id="NP_706333.2" /db_xref="GeneID:1027697" /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA LSDNGEHFSAKAEYLESPTIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK KQMEKSQREYYLNEQMKAIQKELGEMDDVPDENEALKRKIDAAKMPKEAKEKAEAELQ KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIR GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRGLEREISKLCRKAVKQLLLDKSLK HIEINGDNLHDYLGVQRFDYGRADNENRVGQVIGLAWTEVGGDLLTIETACVPGKGKL TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGI AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK" misc_feature 393988..396339 /gene="lon" /locus_tag="SF0384" /note="DNA-binding ATP-dependent protease La; Provisional; Region: PRK10787" /db_xref="CDD:182730" gene 396551..396823 /gene="hupB" /locus_tag="SF0385" /db_xref="GeneID:1027721" CDS 396551..396823 /gene="hupB" /locus_tag="SF0385" /note="Code: L; COG: COG0776" /codon_start=1 /transl_table=11 /product="transcriptional regulator HU subunit beta" /protein_id="NP_706334.1" /db_xref="GeneID:1027721" /translation="MNKSQLIDKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN" misc_feature 396551..396820 /gene="hupB" /locus_tag="SF0385" /note="DNA-binding protein HU-beta; Region: PRK10664" /db_xref="CDD:170612" misc_feature order(396566..396568,396575..396580,396587..396589, 396614..396625,396629..396637,396641..396649, 396653..396658,396668..396682,396689..396691, 396773..396781,396785..396787,396791..396793, 396803..396808) /gene="hupB" /locus_tag="SF0385" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:259853" misc_feature order(396707..396709,396713..396718,396722..396724, 396728..396739,396752..396757,396761..396763) /gene="hupB" /locus_tag="SF0385" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:259853" gene 397015..398886 /gene="ybaU" /locus_tag="SF0386" /db_xref="GeneID:1027695" CDS 397015..398886 /gene="ybaU" /locus_tag="SF0386" /note="Code: O; COG: COG0760" /codon_start=1 /transl_table=11 /product="periplasmic folding chaperone" /protein_id="NP_706335.1" /db_xref="GeneID:1027695" /translation="MMDSLRTAANSLVLKIIFGIIIVSFILTGVSGYLIGGGNNYAAK VNDQEISRGQFENAFNSERNRMQQQLGDQYSELAANEGYMKTLRQQVLNRLIDEALLD QYARELKLGISDEQVKQAIFATPAFQVDGKFDNSRYNGILNQMGMTADQYAQALRNQL TTQQLINGVAGTDFMLKGETDELAALVAQQRVVREATIDVNALAAKQPVTEQEIASYY EQNKNNFMTPEQFRVSYIKLVAATMQQPVSDADIQSYYDQHQDQFTQPQRTRYSIIQT KTEDEAKAVLDELNKGGDFAALAKEKSADIISARNGGDMGWLEDATIPDELKNAGLKE KGQLSGVIKSSVGFLIVRLDDIQPAKVKSLDEVRDDIAAKVKHEKALDAYYALQQKVS DAASNDTESLAGAEQAAGVKATQTGWFSKDNLPEELNFKPVADAIFNGGLVGENGASG INSDIITVDGDRAFVLRVSEHKPEAVKPLADVQEQVKALVQHNKAEQQAKVDAEKLLV DLKAGKGAEAMQAAGLKFGEPKTLSRSGRDPISQAAFALPLPAKDKPSYGMATDMQGN VVLLALDEVKQGSMPEDQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ" misc_feature 397015..398871 /gene="ybaU" /locus_tag="SF0386" /note="periplasmic folding chaperone; Provisional; Region: PRK10788" /db_xref="CDD:182731" gene 399037..399408 /gene="ybaV" /locus_tag="SF0387" /db_xref="GeneID:1027701" CDS 399037..399408 /gene="ybaV" /locus_tag="SF0387" /note="Code: L; COG: COG1555" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706336.1" /db_xref="GeneID:1027701" /translation="MKHGIKALLITLSLACAGMSHSALAAASVAKPTAVETKAEAPAA QSKAAVPAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEYGPFKTVED LKQVPGMGNSLVERNLAVLTL" misc_feature 399199..399405 /gene="ybaV" /locus_tag="SF0387" /note="competence protein ComEA helix-hairpin-helix repeat region; Region: TIGR00426" /db_xref="CDD:129520" gene 399502..399900 /gene="ybaW" /locus_tag="SF0388" /db_xref="GeneID:1026002" CDS 399502..399900 /gene="ybaW" /locus_tag="SF0388" /note="Code: R; COG: COG0824" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706337.1" /db_xref="GeneID:1026002" /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGVENSDSFQWM TAHNIAFVVVNININYRRPAVLSDLLTITSQLQQLNGKSGILNQVITLEPEGQVVADA LITFVCIDLKTQKALALEGELREKLEQMVK" misc_feature 399514..399861 /gene="ybaW" /locus_tag="SF0388" /note="acyl-CoA thioester hydrolase, YbgC/YbaW family; Region: TIGR00051" /db_xref="CDD:129161" misc_feature order(399583..399585,399652..399654,399658..399660, 399739..399750) /gene="ybaW" /locus_tag="SF0388" /note="active site" /db_xref="CDD:238329" gene complement(399952..400647) /gene="ybaX" /locus_tag="SF0389" /db_xref="GeneID:1027692" CDS complement(399952..400647) /gene="ybaX" /locus_tag="SF0389" /note="Code: R; COG: COG0603" /codon_start=1 /transl_table=11 /product="7-cyano-7-deazaguanine synthase QueC" /protein_id="NP_706338.1" /db_xref="GeneID:1027692" /translation="MKRAVVVFSGGQDSTTCLVQALQQYDEVHCVTFDYGQRHRAEID VARELALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPEADGIPNTFVPGRNIL FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVSLGMAKDIRFETPL MWIDKAETWALADYYGKLDLVRNETLTCYNGIKGDGCGHCAACNLRANGLNHYLADKP TVMAAMKQKTGLR" misc_feature complement(399955..400647) /gene="ybaX" /locus_tag="SF0389" /note="queuosine biosynthesis protein QueC; Provisional; Region: PRK11106" /db_xref="CDD:182967" gene complement(400712..402136) /locus_tag="SF0390" /db_xref="GeneID:1025993" CDS complement(400712..402136) /locus_tag="SF0390" /note="Code: EP; COG: COG0747" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_706339.3" /db_xref="GeneID:1025993" /translation="MLELAQLAPGELRTLLQPFMGGQWQNDTPTLRIPYYRPLEPLQP GFLPGRAEQHLAGQIFSGLTRFDNNTQRPIGDLAHHWETSTDRLRWDFYLRSTLHWHN GDAVKASHLHQRLLMLLQLPALDQLFISVKRIEVTHPQCLTFFLHRPDYWLAHRLASY CSHLAHPQFPLIGTGPFRLTQFTAELVRLESHDYYHLRHPLLKAVEYWITPPLFEKDL GTSCRHPVQITIGKPEELQRVSQVSSGISLGFCYLTLRKSPRLSLWQARKVISIIHQS GLLQTLEVGENLITASHALLPGWTIPHWQVPDEVKLPKTLTLVYHLPIELHTMAERLQ ATLAAEGCELTIIFHNAKNWDDTTLLAHADLMMGDRLIGEAPEYTLEQWLRCDPLWPH VFDAPAYAHLQSTLDAVQVMPDEENRFNALKAVFSQLMADATLTPLFNYHYRISAPPG VNGVRLTPRGWFEFTEAWLPAPSQ" misc_feature complement(400718..402133) /locus_tag="SF0390" /note="DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain [Transcription]; Region: SgrR; COG4533" /db_xref="CDD:443600" gene 402492..403322 /gene="cof" /locus_tag="SF0391" /db_xref="GeneID:1027688" CDS 402492..403322 /gene="cof" /locus_tag="SF0391" /note="Code: R; COG: COG0561" /codon_start=1 /transl_table=11 /product="thiamin pyrimidine pyrophosphate hydrolase" /protein_id="NP_706340.1" /db_xref="GeneID:1027688" /translation="MEKEMARLVAFDMDGTLLMPDHHLGEKTLSTLARLRERDITLTF ATGRHALEMQHILGALSLDAYLITGNGTRVHSLEGELLHRDDLPADVAELVLYQQWDT RASMHIFNDDGWFTGKESPALLQVFVYSGFRYQIIDVKKMPLGSVTKICFCGDHDDLT RLQIQLYEALGERAHLCFSATDCLEVLPVGCNKGAALTVRTQHLGLSLRDCMAFGDAM NDREMLGSVGSGFIMGNAMPQLRAELPHLPVIGHCRNQAVSHYLTHWLDYPHLPYSPE " misc_feature 402504..403319 /gene="cof" /locus_tag="SF0391" /note="HMP-PP phosphatase; Region: PRK15126" /db_xref="CDD:185080" gene 403389..403934 /gene="ybaO" /locus_tag="SF0392" /db_xref="GeneID:1027680" CDS 403389..403934 /gene="ybaO" /locus_tag="SF0392" /note="Code: K; COG: COG1522" /codon_start=1 /transl_table=11 /product="LRP-like transcriptional regulator" /protein_id="NP_706341.2" /db_xref="GeneID:1027680" /translation="MVFKPHRINCRDFTFKIELKEKKILRGRAMLDKIDRKLLALLQQ DCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIGLGLTAFVLIKTQ HHSSEWYCRFVTVVTEMPEVLGVWRMAGEYDYLMRVQVADMKRYDEFYKRLVNSVPGL SDVTSSFAMEQIKYTTSLPIE" misc_feature 403473..403895 /gene="ybaO" /locus_tag="SF0392" /note="DNA-binding transcriptional regulator, Lrp family [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:441131" gene 403964..405736 /gene="mdlA" /locus_tag="SF0393" /db_xref="GeneID:1027689" CDS 403964..405736 /gene="mdlA" /locus_tag="SF0393" /note="Code: Q; COG: COG1132" /codon_start=1 /transl_table=11 /product="multidrug transporter membrane protein\ATP-binding protein" /protein_id="NP_706342.1" /db_xref="GeneID:1027689" /translation="MRLFAQLSWYFRREWRRYLGAVALLVIIAMLQLVPPKVVGIVVD GVTEQHFTTGLSLMWIATMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDYYRQLSR QHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIMMSTQISWQL TLFALLPMPVMAIMIKRNGDALHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR QSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVVQGSLTLGQ LTSFMMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVNDGSEPVPEGRGE LDVNIHQFTYPQTDHPALENVNFALKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGD IRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGCPNATQQEIEHVARLAS VHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLVNAEILILDDALSAVDGRTE HQILHNLRQWGQGRTVIISAHRLSALTEASEIIVMQHGHIAQRGNHDELAQQSGWYRD MYRYQQLEAALDDVPEIREEAVDA" misc_feature 404027..405733 /gene="mdlA" /locus_tag="SF0393" /note="SmdA family multidrug ABC transporter permease/ATP-binding protein; Region: PRK10789" /db_xref="CDD:182732" gene 405729..407510 /gene="mdlB" /locus_tag="SF0394" /db_xref="GeneID:1027737" CDS 405729..407510 /gene="mdlB" /locus_tag="SF0394" /note="Code: Q; COG: COG1132" /codon_start=1 /transl_table=11 /product="multidrug transporter membrane protein\ATP-binding protein" /protein_id="NP_706343.2" /db_xref="GeneID:1027737" /translation="MRSFSQLWPTLKRLLAYGSPWRKPLGIAVLMMWVAAAAEVSGPL LISYFIDNMVAKNNLPLKVVAGLAAAYVGLQLFAAGLHYAQSLLFNRAAVGAVQQLRT DVMDAALRQPLSEFDTQPVGQVISRVTNDTEVIRDLYVTVVATVLRSAALVGAMLVAM FSLDWRMALVAIMIFPVVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQ QFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSSLILCGLLMLFGFSAS GTIEVGVLYAFISYLGRLNEPLIELTTQQAMLQQAVVAGERVFELMDGPRQQYGNDDY PLQSGTIEVDNVSFAYRDDNLVLKNINLSVPSRNFVALVGHTGSGKSTLASLLMGYYP LTEGEIHLDGRPLSSLSHSALRQGVAMVQQDPVVLADTFLANVTLGRDISEERVWQAL ETVQLAELARSMSDCIYTPLGEQGNNLSVGQKQLLALARVLVETPQILILDEATASID SGTEQAIQHALAAVREHTTLVVIAHRLSTIIDADTILVLHRGQAVEQGTHQQLLAAQG RYWQMYQLQLAGEELAASVREEESLSA" misc_feature 405729..407504 /gene="mdlB" /locus_tag="SF0394" /note="SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; Region: PRK10790" /db_xref="CDD:182733" gene 407691..408029 /gene="glnK" /locus_tag="SF0395" /db_xref="GeneID:1027682" CDS 407691..408029 /gene="glnK" /locus_tag="SF0395" /note="Code: E; COG: COG0347" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II 2" /protein_id="NP_706344.2" /db_xref="GeneID:1027682" /translation="MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAE LYRGAEYSVNFLPKVKIDVAIADDQLDEVIDIVSKAAYTGKIGDGKIFVAELQRVIRI RTGEADEAAL" misc_feature 407691..408026 /gene="glnK" /locus_tag="SF0395" /note="P-II family nitrogen regulator; Region: PRK10665" /db_xref="CDD:182629" gene 408059..409345 /gene="amtB" /locus_tag="SF0396" /db_xref="GeneID:1027703" CDS 408059..409345 /gene="amtB" /locus_tag="SF0396" /note="Code: P; COG: COG0004" /codon_start=1 /transl_table=11 /product="ammonium transporter" /protein_id="NP_706345.1" /db_xref="GeneID:1027703" /translation="MKIATIKTGLASLAMLPGLVMAAPAVADKADNAFMMICTALVLF MTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNNFFGNINW LMLKNIELTAVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTL SYIPIAHMVWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH NLPMVFTGTAILYIGWFGFNAGSVGTANEIAALAFVNTVVATAAAILGWIFGEWALRG KPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPC DVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIVWSGVVA FIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYNA" misc_feature 408059..409342 /gene="amtB" /locus_tag="SF0396" /note="ammonium transporter AmtB; Region: PRK10666" /db_xref="CDD:182630" gene complement(409394..410254) /gene="tesB" /locus_tag="SF0397" /db_xref="GeneID:1027706" CDS complement(409394..410254) /gene="tesB" /locus_tag="SF0397" /note="Code: I; COG: COG1946" /codon_start=1 /transl_table=11 /product="acyl-CoA thioesterase II" /protein_id="NP_706346.2" /db_xref="GeneID:1027706" /translation="MSQALKNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQAL YAAKETVPEERLVHSFHSYFLRPGDSKKPIIYDVETLRDGNSFSARRVAAIQNGKPIF YMTASFQAPEAGFEHQKTMPSAPAPDGLPSETQIAQSLAHLLPPVLKDKFICDRPLEV RPVEFHNPLKGHVAEPHRQVWIRANGSVPDDLRVHQYLLGYASDLNFLPVALQPHCIG FLEPGIQIATIDHSMWFHRPFNLNEWLLYSVESTSASSARGFVRGEFYTQDGVLVAST VQEGVMRNHN" misc_feature complement(409397..410254) /gene="tesB" /locus_tag="SF0397" /note="acyl-CoA thioesterase II; Provisional; Region: PRK10526" /db_xref="CDD:182519" gene 410472..411044 /gene="ybaY" /locus_tag="SF0398" /db_xref="GeneID:1026012" CDS 410472..411044 /gene="ybaY" /locus_tag="SF0398" /note="Code: S; COG: COG3126" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706347.1" /db_xref="GeneID:1026012" /translation="MKLVHMASGLAVAIALAACADKSADIQTPAPAANTSISATQQPA IQQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLAQKAVRTEGKQSPFSFV LPFNPADVQPNARILLSAAITVNDKLVFITDTVQPVINQGGTKADLTLVPVQQTAVPV QASGGATTTVPSTSPTQVNPSSAVPAPTQY" misc_feature 410565..410936 /gene="ybaY" /locus_tag="SF0398" /note="Uncharacterized lipoprotein YbaY [Function unknown]; Region: YbaY; COG3126" /db_xref="CDD:442360" mobile_element 411070..412497 /mobile_element_type="insertion sequence:IS4" gene 411137..412483 /locus_tag="SF0399" /db_xref="GeneID:1027723" CDS 411137..412483 /locus_tag="SF0399" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_706348.1" /db_xref="GeneID:1027723" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMVLERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGAMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature 411227..412225 /locus_tag="SF0399" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene complement(412513..412824) /gene="ybaZ" /locus_tag="SF0400" /db_xref="GeneID:1027693" CDS complement(412513..412824) /gene="ybaZ" /locus_tag="SF0400" /note="Code: L; COG: COG3695" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706349.2" /db_xref="GeneID:1027693" /translation="MEKEDSFPQRVWQIVAAIPEGYVTTYGDVAKLAGSPRAARQVGG VLKRLPEGSTLPWHRVVNRHGTISLTGPDLQRQRQALLAEGVMVSGSGQIDLQRYRWN Y" misc_feature complement(412516..412821) /gene="ybaZ" /locus_tag="SF0400" /note="Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain [Transcription]; Region: Atl1; COG3695" /db_xref="CDD:442910" misc_feature complement(order(412618..412620,412639..412641, 412654..412656,412678..412680,412684..412689, 412696..412698,412702..412707,412711..412713, 412720..412722,412744..412749,412801..412806)) /gene="ybaZ" /locus_tag="SF0400" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:119438" misc_feature complement(order(412573..412575,412645..412647, 412651..412656,412747..412749)) /gene="ybaZ" /locus_tag="SF0400" /note="active site" /db_xref="CDD:119438" gene 412979..413092 /gene="ffs" /locus_tag="SF4554" /db_xref="GeneID:1027718" ncRNA 412979..413092 /ncRNA_class="other" /gene="ffs" /locus_tag="SF4554" /product="4.5S RNA; component of ribonucleoprotein particle" /db_xref="GeneID:1027718" gene 413203..413556 /gene="ybaA" /locus_tag="SF0401" /db_xref="GeneID:1027736" CDS 413203..413556 /gene="ybaA" /locus_tag="SF0401" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706350.1" /db_xref="GeneID:1027736" /translation="MKYVDGFVVAVPADKKDAYREMAAKAAPLFKEFGALRIVECWAS DVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQKMMSDPRMKEFGESMPFD GKRMIYGGFESIIDE" misc_feature 413203..413553 /gene="ybaA" /locus_tag="SF0401" /note="Uncharacterized conserved protein YbaA, DUF1428 family [Function unknown]; Region: YbaA; COG5507" /db_xref="CDD:444258" gene complement(413598..415148) /gene="ylaB" /locus_tag="SF0402" /db_xref="GeneID:1027678" CDS complement(413598..415148) /gene="ylaB" /locus_tag="SF0402" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706351.2" /db_xref="GeneID:1027678" /translation="MRTRHLVGLISGVLILSVLLPVGLSIWLAHQQVETSFIEELDTY SSRVAIRANKVATQGKDALQELERWQGAACSEAHLMEMRRVSYSYRYIQEVVYIDNNV PQCSSLEHESPPDTFPELGKISKDGYRVWLTSHNDLGIIRYMVAMGTAHYVVMIDPAS FIDVIPYSSWQIDAAIIGNAHNVVITSSDEIAQGIITRLQKTPGEHIENNGIIYDILP FLEMNISIITWASTKMLQKGWHRQVFIWLPLGLVIGLLAAMFVLRILRRIQSPHHRLQ DAIENRDICVHYQPIVSLANGKIVGAEALARWPQTDGSWLSPDSFIPLAQQTGLSEPL TLLIIRSVFEDMGDCLRQHPQQHISINLESTVLTSEKIPQLLREMINHYQVNPRQIAL ELTEREFADPKTSAPIISRYREAGHEIYLDDFGTGYSSLSYLQDLDVDILKIDKSFVD ALEYKNVTPHIIEMAKTLKLKMVAEGIETSKQEEWLRQHGVHYGQGWLYSKALPKEDF LRWAEQHL" misc_feature complement(413601..415148) /gene="ylaB" /locus_tag="SF0402" /note="Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal transduction mechanisms]; Region: YjcC; COG4943" /db_xref="CDD:443970" gene complement(415312..415782) /gene="ylaC" /locus_tag="SF0403" /db_xref="GeneID:1027725" CDS complement(415312..415782) /gene="ylaC" /locus_tag="SF0403" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706352.2" /db_xref="GeneID:1027725" /translation="MTEIQRLLTETIESLNTREKRDNKPRFSISFIRKHPGLFIGMYV AFFATLAVMLQSETLSGSVWLLVVLFILLNGFFFFDVYPRYRYEDIDVLDFRVCYNGE WYNTRFVPAALVEAILNSPRVADVHKEQLQKMIVRKGELSFYDIFTLARAESTS" misc_feature complement(415324..415782) /gene="ylaC" /locus_tag="SF0403" /note="Inner membrane protein YlaC; Region: YlaC; pfam10777" /db_xref="CDD:431490" gene complement(415898..416449) /gene="ylaD" /locus_tag="SF0404" /pseudo /db_xref="GeneID:1027712" misc_feature complement(415898..416449) /gene="ylaD" /locus_tag="SF0404" /note="Similar to Escherichia coli K12 transferase gi: 1786664 (184 aa). BLAST with identity of 98% in 183 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(416621..416839) /gene="hha" /locus_tag="SF0405" /db_xref="GeneID:1027731" CDS complement(416621..416839) /gene="hha" /locus_tag="SF0405" /codon_start=1 /transl_table=11 /product="gene expression modulator" /protein_id="NP_706353.2" /db_xref="GeneID:1027731" /translation="MSEKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY SAADHRLAELTMNKLYDKIPSSVWKFIR" misc_feature complement(416624..416839) /gene="hha" /locus_tag="SF0405" /note="hemolysin expression modulator Hha; Region: PRK10945" /db_xref="CDD:182856" gene complement(416865..417239) /gene="ybaJ" /locus_tag="SF0406" /db_xref="GeneID:1027533" CDS complement(416865..417239) /gene="ybaJ" /locus_tag="SF0406" /codon_start=1 /transl_table=11 /product="Hha toxicity attenuator" /protein_id="NP_706354.1" /db_xref="GeneID:1027533" /translation="MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAI NLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYLDDTFMLFSSYGINMQALQKWRK SGNRLFRCFVNATKENPASLSC" misc_feature complement(416874..417239) /gene="ybaJ" /locus_tag="SF0406" /note="Hha toxicity modulator TomB; Region: PRK10667" /db_xref="CDD:182631" gene complement(417785..420934) /gene="acrB" /locus_tag="SF0407" /db_xref="GeneID:1027711" CDS complement(417785..420934) /gene="acrB" /locus_tag="SF0407" /note="Code: Q; COG: COG0841" /codon_start=1 /transl_table=11 /product="multidrug efflux system protein AcrB" /protein_id="NP_706355.1" /db_xref="GeneID:1027711" /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT ISRFYPGADAKTVQDTVTQVIEQNMTGIDNLMYMSSNSDSTGTVQITLTFESGTDADI AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA NMKDAISRTSGVGDVQLFGSQYAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQ LGGTPPVKGQQLNASIIAQTRLTSTEEFGKILLKVNQDGSRVLLRDVAKIELGGENYD IIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVK ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT LTMFGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLS AVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEG KKGFFGWLNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPD EDQGVFMTMVQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNT GIAFVSLKDWADRPGEENKVEAITMRATRAFSQIKDAMVFAFNLPAIVELGTATGFDF ELIDQAGLGHEKLTQARNQLLAEAAKHPDMLTSVRPNGLEDTPQFKIDIDQEKAQALG VSINDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDIGDWYVRAADGQM VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASKLPTGVG YDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSTPFSVMLVVPLGVIGALL AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLIEATLDAVRMRL RPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAIFFVPVFFVVVR RRFSRKNEDIEHSHTVDHH" misc_feature complement(417788..420934) /gene="acrB" /locus_tag="SF0407" /note="multidrug efflux RND transporter permease subunit AcrB; Region: PRK15127" /db_xref="CDD:185081" gene complement(420957..422150) /gene="acrA" /locus_tag="SF0408" /db_xref="GeneID:1027728" CDS complement(420957..422150) /gene="acrA" /locus_tag="SF0408" /note="Code: Q; COG: COG0845" /codon_start=1 /transl_table=11 /product="multidrug efflux system transporter AcrA" /protein_id="NP_706356.2" /db_xref="GeneID:1027728" /translation="MNKNRGFTPLAVVLMLSGSLALTGCDDKQAQQGGQQMPAVGVVT VKTEPLQITTELPGRTSAYRIAEVRPQVSGIILKRNFKEGSDIEAGVSLYQIDPATYQ ATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQGYDQALADAQQANAAVTAA KAAVETARINLAYTKVTSPISGRIGKSNVTEGALVQNGQATVLATVQQLDPIYVDVTQ SSNDFLRLKQELANGTLKQENGKAKVSLITSDGIKFPQDGTLEFSDVTVDQTTGSITL RAIFPNPDHTLLPGMFVRARLEEGLNPNAILVPQQGVTRTPRGDATVLVVGADDKVET RPIVASQAIGDKWLVTEGLKAGDRVVISGLQKVRPGVQVKAQEVTADNNQQAASGAQP EQSKS" misc_feature complement(420960..422150) /gene="acrA" /locus_tag="SF0408" /note="multidrug efflux RND transporter periplasmic adaptor subunit AcrA; Region: PRK15030" /db_xref="CDD:184990" gene 422292..422939 /gene="acrR" /locus_tag="SF0409" /db_xref="GeneID:1027719" CDS 422292..422939 /gene="acrR" /locus_tag="SF0409" /note="Code: K; COG: COG1309" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor AcrR" /protein_id="NP_706357.1" /db_xref="GeneID:1027719" /translation="MARKTKQEAQETRQHILDVALRLFSQQGVSSTSLGEIAKAAGVT RGAIYWHFKDKSDLFSEIWELSESNIGELELEYQAKFPGDPLSVLREILIHVLESTVT EERRRLLMEIIFHKCEFVGEMAVVQQAQRNLCLESYDRIEQTLKHCIEAKMLPADLMT RRAAIIMRGYISGLMENWLFAPQSFDLKKEARDYVAILLEMYLLCPTLRNPATNE" misc_feature 422292..422936 /gene="acrR" /locus_tag="SF0409" /note="DNA-binding transcriptional repressor AcrR; Provisional; Region: PRK10668" /db_xref="CDD:182632" gene 423067..426429 /gene="aefA" /locus_tag="SF0410" /db_xref="GeneID:1027717" CDS 423067..426429 /gene="aefA" /locus_tag="SF0410" /note="Code: M; COG: COG3264" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706358.1" /db_xref="GeneID:1027717" /translation="MTMFQYYKRSRHFVFSAFIAFVFVLLCQNTAFARASSNGDLPTK ADLQAQLDSLNKQKDLSAQDKLVQQDLTDTLATLDKIDRIKEETVQLRQKVAEAPEKM RQATAALTALSDVDNDEETRKILSTLSLRQLETRVAQALDDLQNAQNDLASYNSQLVS LQTQPERVQNAMYNASQQLQQIRSRLDGTDVGETALRPSQKVLMQAQQALLNAEIDQQ RKSLEGNTVLQDTLQKQRDYVTANSARLEHQLQLLQEAVNSKRLTLTEKTAQEAVSPD EAARIQANPLVKQELEINQQLSQRLITATENGNQLMQQNIKVKNWLERALQSERNIKE QIAVLKGSLLLSRILYQQQQTLPSADELENMTNRIADLRLEQFEVNQQRDALFQSDAF VNKLEEGHTNEVNSEVHDALLQVVDMRRELLDQLNKQLGNQLMMAINLQINQQQLMSV SKNLKSILTQQIFWVNSNRPMDWDWIKAFPQSLKDEFKSMKITVNWEKAWPAVFIAFL AGLPLLLIAGLIHWRLGWLKAYQQKLASAVGSLRNDSQLNTPKAILIDLIRALPVCLI ILAVGLILLTMQLNISELLWSFSKKLAIFWLVFGLCWKVLEKNGVAVRHFGMPEQQTS HWRRQIVRISLALLPIHFWSVVAELSPLHLMDDVLGQAMIFFNLLLIAFLVWPMCRES WRDKESHTMRLVTITVLSIIPIALMVLTATGYFYTTLRLSGRWIETVYLVIIWNLLYQ TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPPEEPTIALEQVNQQTLRITMLLM FALFGVMFWAIWSDLITVFSYLDSITLWHYNGTEAGAAVVKNVTMGSLLFAIIASMVA WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYIIIAVGAMTVFGSLGVSWDKLQW LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGSFSGTVSKIRIRATTIT DFDRKEVIIPNKAFVTERLINWSLTDTTTRLVIRLGVAYGSDLEKVRKVLLKAATEHP RVMHEPMPEVFFTAFGASTLDHELRLYVRELRDRSRTVDELNRTIDQLCRENDINIAF NQLEVHLHNEKGDEVTEVKRDYKGDDPTPAVG" misc_feature 423085..426426 /gene="aefA" /locus_tag="SF0410" /note="mechanosensitive channel MscK; Region: PRK11281" /db_xref="CDD:236892" gene complement(426641..426802) /gene="ybaM" /locus_tag="SF0411" /db_xref="GeneID:1026020" CDS complement(426641..426802) /gene="ybaM" /locus_tag="SF0411" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706359.1" /db_xref="GeneID:1026020" /translation="MSLENAPDDVKLAVDLIVLLEENQIPASTVLRALDIVKRDYEKK LTHDDEAEK" misc_feature complement(426662..426802) /gene="ybaM" /locus_tag="SF0411" /note="hypothetical protein; Provisional; Region: PRK11038" /db_xref="CDD:182920" gene complement(426816..427343) /gene="priC" /locus_tag="SF0412" /db_xref="GeneID:1027710" CDS complement(426816..427343) /gene="priC" /locus_tag="SF0412" /codon_start=1 /transl_table=11 /product="primosomal replication protein N''" /protein_id="NP_706360.1" /db_xref="GeneID:1027710" /translation="MKTALLLEKLEGQLATLRQRCAPVSQFATLSARFDRHLFQTRAT TLQSCLDEAGDNLAALRHAVEQQQLPQVAWLAEHLAAQLEAIAREASAWSLREWDSAP PKISRWQRKRIQHQDFERRLREMVAERRARLARVTDLVEQQTLHREVEAYEARLARCR HALEKIENRLARLTR" misc_feature complement(426819..427331) /gene="priC" /locus_tag="SF0412" /note="primosomal replication protein N''; Provisional; Region: PRK10093" /db_xref="CDD:182236" gene 427413..427790 /gene="ybaN" /locus_tag="SF0413" /db_xref="GeneID:1027720" CDS 427413..427790 /gene="ybaN" /locus_tag="SF0413" /note="Code: S; COG: COG2832" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706361.1" /db_xref="GeneID:1027720" /translation="MQRIILIIIGWLAVVLGTLGVVLPVLPTTPFILLAAWCFARSSP RFHAWLLYRSWFGSYLRFWQKHHAMPRGVKPRAILLILLTFAISLWFVQMPWVRIMLL VILACLLFYMWRIPVIDEKQEKH" misc_feature 427413..427787 /gene="ybaN" /locus_tag="SF0413" /note="DUF454 family protein; Region: PRK10527" /db_xref="CDD:182520" gene 427943..428494 /gene="apt" /locus_tag="SF0414" /db_xref="GeneID:1027534" CDS 427943..428494 /gene="apt" /locus_tag="SF0414" /note="Code: F; COG: COG0503" /codon_start=1 /transl_table=11 /product="adenine phosphoribosyltransferase" /protein_id="NP_706362.2" /db_xref="GeneID:1027534" /translation="MTATAQQLEYLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS IDLLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPGKLPRETISENYDL EYGTDQLEIHVDAIKPGDKVLVVDDLLATGGTIEATVKLIRRLGGEVADAAFIINLFD LGGEQRLEKQGITSYSLVPFPGH" misc_feature 427958..428488 /gene="apt" /locus_tag="SF0414" /note="adenine phosphoribosyltransferase; Provisional; Region: PRK02304" /db_xref="CDD:235028" misc_feature order(428132..428134,428138..428140,428318..428326, 428330..428344,428414..428416) /gene="apt" /locus_tag="SF0414" /note="active site" /db_xref="CDD:206754" gene 428623..430548 /gene="dnaX" /locus_tag="SF0415" /db_xref="GeneID:1027729" CDS 428623..430548 /gene="dnaX" /locus_tag="SF0415" /note="Code: L; COG: COG2812" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunits gamma and tau" /protein_id="NP_706363.1" /db_xref="GeneID:1027729" /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDAL SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAMVEGNGERVMALINEAAARGI EWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELARTIPPTDIQLYYQTLLI GRKELPYAPDRRMGVEMTLLRALAFHPRMPLPEPEVPRQSFAPVAPTAVMTPTLVPPQ SAPQQAPTVPLPETTSQVLAARQQLQRVQGATKAKKSEPAAATRARPVNNAALERLAS VTDRVQARPVPSALEKAPAKKEAYRWKATTPVMQQKEVVATPKALKKALEHEKTPELA VKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEESDNAVCLHLRSSQRHLNNRGA QQKLAEALSMLKGSTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQT LRRFFDAELDEESIRPI" misc_feature 428623..430545 /gene="dnaX" /locus_tag="SF0415" /note="DNA polymerase III subunits gamma and tau; Validated; Region: PRK07994" /db_xref="CDD:236138" gene 430601..430930 /gene="ybaB" /locus_tag="SF0416" /db_xref="GeneID:1027735" CDS 430601..430930 /gene="ybaB" /locus_tag="SF0416" /note="Code: S; COG: COG0718" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706364.2" /db_xref="GeneID:1027735" /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP PGFKMPF" misc_feature 430616..430906 /gene="ybaB" /locus_tag="SF0416" /note="DNA-binding nucleoid-associated protein YbaB/EfbC [Transcription]; Region: YbaB; COG0718" /db_xref="CDD:440482" gene 430930..431535 /gene="recR" /locus_tag="SF0417" /db_xref="GeneID:1027757" CDS 430930..431535 /gene="recR" /locus_tag="SF0417" /note="Code: L; COG: COG0353" /codon_start=1 /transl_table=11 /product="recombination protein RecR" /protein_id="NP_706365.1" /db_xref="GeneID:1027757" /translation="MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLA QALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF" misc_feature 430939..431517 /gene="recR" /locus_tag="SF0417" /note="Recombinational DNA repair protein RecR [Replication, recombination and repair]; Region: RecR; COG0353" /db_xref="CDD:440122" gene 431645..433519 /gene="htpG" /locus_tag="SF0418" /db_xref="GeneID:1027713" CDS 431645..433519 /gene="htpG" /locus_tag="SF0418" /note="Code: O; COG: COG0326" /codon_start=1 /transl_table=11 /product="heat shock protein 90" /protein_id="NP_706366.1" /db_xref="GeneID:1027713" /translation="MKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELISNASDAAD KLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTISDNGVGMTRDEVIDHLGTIAKSGT KSFLESLGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGEKPENGVFWESAGEG EYTVADITKEDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEIEKREEKDG ETVISWAKINKAQALWTRNKSEITDEEYKEFYKHIAHDFNDPLTWSHNRVEGKQEYTS LLYIPSQAPWDMWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLIDSSDLPLNV SREILQDSTVTRNLRNALTKRVLQMLEKLAKDDAEKYQTFWQQFGLVLKEGPAEDFAN QEAIAKLLRFASTYTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAKSSPHLELL RKKGIEVLLLSDRIDEWMMNYLTEFDGKPFQSVSKVDESLEKLADEVDESAKEAEKAL TPFIDRVKALLGERVKDVRLTHRLTDTPAIVSTDADEMSTQMAKLFAAAGQKVPEVKY IFELNPDHVLVKRAADTEDEAKFSEWVELLLDQALLAERGTLEDPNLFIRRMNQLLVS " misc_feature 431654..433513 /gene="htpG" /locus_tag="SF0418" /note="heat shock protein 90; Provisional; Region: PRK05218" /db_xref="CDD:235366" gene 433700..434344 /gene="adk" /locus_tag="SF0419" /db_xref="GeneID:1027707" CDS 433700..434344 /gene="adk" /locus_tag="SF0419" /note="Code: F; COG: COG0563" /codon_start=1 /transl_table=11 /product="adenylate kinase" /protein_id="NP_706367.2" /db_xref="GeneID:1027707" /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIN VDYVLEFDVPDELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTGEELTTRKDDQ EETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKQVAEVRADLEKILG" misc_feature 433700..434341 /gene="adk" /locus_tag="SF0419" /note="adenylate kinase; Reviewed; Region: adk; PRK00279" /db_xref="CDD:234711" gene 434476..435438 /gene="hemH" /locus_tag="SF0420" /db_xref="GeneID:1027726" CDS 434476..435438 /gene="hemH" /locus_tag="SF0420" /note="Code: H; COG: COG0276" /codon_start=1 /transl_table=11 /product="ferrochelatase" /protein_id="NP_706368.1" /db_xref="GeneID:1027726" /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTSRLL WWPLLRGVILPLRSPRVAKLYASVWMEDGSPLMVYSRQQQQALAQRLPDTPVALGMSY GSPSLESSVDELLAEHVDHIVVLPLYPQFSCSTVGAVWDELARILARKRSIPGISFIR DYADNHDYINALANSVRASFAKHGEPDLLLLSYHGIPQRYADEGDDYPQRCRTTTREL ASALGMVPEKVMMTFQSRFGREPWLMPYTDETLKMLGEKGVGHIQVMCPGFAADCLET LEEIAEQNREVFLGAGGKKYEYIPALNATPEHIEMMANLVAAYR" misc_feature 434476..435435 /gene="hemH" /locus_tag="SF0420" /note="ferrochelatase; Region: hemH; TIGR00109" /db_xref="CDD:272909" gene complement(435576..436394) /gene="ybaC" /locus_tag="SF0421" /db_xref="GeneID:1027722" CDS complement(435576..436394) /gene="ybaC" /locus_tag="SF0421" /note="Code: I; COG: COG0657" /codon_start=1 /transl_table=11 /product="acetylesterase" /protein_id="NP_706369.1" /db_xref="GeneID:1027722" /translation="MKPENKLPVLDLISAEMKTVVNTLQPDLPSWPATGTIAEQRQYY TLERRFWNAGAPEMATRAYMVPTKYGQVETRLFCPQPDSPATLFYLHGGGFILGNLDT HDRIMRLLASYSQCTVIGINYTLSPEARFPQAIEEIVAACCYFHQQAEDYQINMSRIG FAGDSAGAMLALASALWLRDKQIDCGKIAGVLLWYGLYGLRDSVTRRLLGGVWDGLTQ QDLQMYEEAYLSNDADRESPYYCLFNNDLTREVPPCFIAGAEFDPLLDDSRLLY" misc_feature complement(435579..436385) /gene="ybaC" /locus_tag="SF0421" /note="acetyl esterase; Region: PRK10162" /db_xref="CDD:236660" gene 436546..437850 /gene="gsk" /locus_tag="SF0422" /db_xref="GeneID:1027732" CDS 436546..437850 /gene="gsk" /locus_tag="SF0422" /note="Code: G; COG: COG0524" /codon_start=1 /transl_table=11 /product="inosine/guanosine kinase" /protein_id="NP_706370.1" /db_xref="GeneID:1027732" /translation="MKFPGKRKSKHYFPVNARDPLLQQFQPENETSAAWVVGIDQTLV DIEAKVDDEFIERYGLSAGHSLVIEDDVAEVLYQELKQKNLITHQFAGGTIGNTMHNY SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQGVDGPIGRCFTLIGESG ERTFAISPGHMNQLRAESIPEDVIAGASALVLTSYLVRCKPGEPMPEATMKAIEYAKK YNVPVVLTLGTKFVIAENPQWWQQFLKDHVSILAMNEDEAEALTGESDPLLASDKALD WVELVLCTAGPIGLYMAGFTEDEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCQNPL RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSQEESYWDR" misc_feature 436546..437847 /gene="gsk" /locus_tag="SF0422" /note="inosine/guanosine kinase; Provisional; Region: PRK15074" /db_xref="CDD:185033" misc_feature order(436834..436836,437608..437610,437617..437619) /gene="gsk" /locus_tag="SF0422" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238177" misc_feature order(437305..437307,437395..437397,437602..437604, 437611..437616) /gene="gsk" /locus_tag="SF0422" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238177" gene complement(437983..439659) /gene="ybaL" /locus_tag="SF0423" /db_xref="GeneID:1027716" CDS complement(437983..439659) /gene="ybaL" /locus_tag="SF0423" /note="Code: P; COG: COG0475" /codon_start=1 /transl_table=11 /product="cation:proton antiport protein" /protein_id="NP_706371.1" /db_xref="GeneID:1027716" /translation="MHHATPLITTIVGGLVLAFILGMLANKLRISPLVGYLLAGVLAG PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLL GMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLV MVLTLVLLPAVAGMMEQGDVGFATLAVDMGITIGKVIAFIAIMMLVGRRLVPWIMARS AATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP LRDAFAVLFFVSVGMLFDPLILIQQPLAVLATLAIILFGKSVAALFLVRLFGHSQRTA LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFALLEKYLA KTETLEEQTLEEAIEEEKQIPVDICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR TRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPD IEIIARAHYDDEVTYITERGANQVVMGEREIARTMLELLETPPAGEVVTG" misc_feature complement(437986..439659) /gene="ybaL" /locus_tag="SF0423" /note="putative cation:proton antiport protein; Provisional; Region: PRK10669" /db_xref="CDD:182633" gene complement(439897..441117) /gene="fsr" /locus_tag="SF0424" /db_xref="GeneID:1027745" CDS complement(439897..441117) /gene="fsr" /locus_tag="SF0424" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="fosmidomycin resistance protein" /protein_id="NP_706372.1" /db_xref="GeneID:1027745" /translation="MAMSEQTQPVAGAAASTTKARTSFGILGAISLSHLLNDMIQSLI LAIYPLLQSEFSLTFMQIGMITLTFQLASSLLQPVVGYWTDKYPMPWSLPIGMCFTLS GLVLLALAGSFGAVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG SSLGPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYSAQHRMNKGKPKATIIN PLPRNKVVLAVSILLILIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAV AAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLILPYARLHWTGVLTVIIGFILASAFS AILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIELVYKICAFLPLL GMLTIFLPDNRHKD" misc_feature complement(439924..441030) /gene="fsr" /locus_tag="SF0424" /note="Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters; Region: MFS_FsR; cd17478" /db_xref="CDD:341031" misc_feature complement(order(440029..440031,440038..440043, 440050..440055,440062..440064,440107..440109, 440119..440121,440131..440136,440278..440280, 440290..440292,440374..440376,440383..440391, 440398..440403,440410..440412,440635..440637, 440644..440649,440656..440658,440713..440715, 440722..440730,440734..440739,440887..440889, 440983..440985,440992..440997,441004..441009)) /gene="fsr" /locus_tag="SF0424" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:341031" gene 441335..442987 /gene="ushA" /locus_tag="SF0425" /db_xref="GeneID:1027755" CDS 441335..442987 /gene="ushA" /locus_tag="SF0425" /note="Code: F; COG: COG0737" /codon_start=1 /transl_table=11 /product="bifunctional UDP-sugar hydrolase/5'-nucleotidase" /protein_id="NP_706373.1" /db_xref="GeneID:1027755" /translation="MKLLQRGVALALLTTFTLASETALAYEQDKTYKITVLHTNDHHG HFWRNEYGEYGLAAQKTLVDGIRKEVAAEGGSVLLLSGGDINTGVPESDLQDAEPDFR GMNLVGYDAMAIGNHEFDNPLTVLRQQEKWAKFPLLSANIYQKSTGERLFKPWALFKR QDLKIAVIGLTTDDTAKIGNLEYFTDIEFRKPADEAKLVIQELQQTEKPDIIIAATHM GHYDNGEHGSNAPGDVEMARALPAGSLAMIVGGHSQDPVCMAAENKKQVDYVPGTPCK PDQQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWEDGKSERVL YTPEIAENQQMISLLSPFQNKGKAQLEVKIGKTNGRLEGDRDKVRFVQTNMGRLILAA QMDRTGADFAVMSGGGIRDSIEAGDISYKNVLKVQPFGNVVVYADMTGKEVIDYLTAV AQMKPDSGAYPQFANVSFVAKDGKLNDLKIKGEPVDPAKTYRMATLNFNATGGDGYPR LDNKPGYVNTGFIDAEVLKAYIQKSSPLDVSVYEPKGEVSWQ" misc_feature 441335..442984 /gene="ushA" /locus_tag="SF0425" /note="bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed; Region: ushA; PRK09558" /db_xref="CDD:236566" gene complement(443024..443503) /gene="ybaK" /locus_tag="SF0426" /db_xref="GeneID:1027738" CDS complement(443024..443503) /gene="ybaK" /locus_tag="SF0426" /note="Code: S; COG: COG2606" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706374.1" /db_xref="GeneID:1027738" /translation="MTPAVKLLEKNKISFQIHTYEHDPAETNFGDEVVKKLGLNPDQV YKTLLVAVNGDMKHLAVAVTPVAGQLDLKKVAKALGAKKVEMADPMVAQRSTGYLVGG ISPLGQKKRLPTIIDAPAQEFATIYVSGGKRGLDIELAAGDLAKILDAKFADIARRD" misc_feature complement(443027..443503) /gene="ybaK" /locus_tag="SF0426" /note="Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK; Region: PRK10670" /db_xref="CDD:182634" misc_feature complement(order(443117..443119,443198..443203, 443366..443368)) /gene="ybaK" /locus_tag="SF0426" /note="putative deacylase active site [active]" /db_xref="CDD:237976" gene complement(443707..444501) /gene="ybaP" /locus_tag="SF0427" /db_xref="GeneID:1027724" CDS complement(443707..444501) /gene="ybaP" /locus_tag="SF0427" /codon_start=1 /transl_table=11 /product="ligase" /protein_id="NP_706375.1" /db_xref="GeneID:1027724" /translation="MDLLYRVKTLWAALRGNHYTWPAIDITLPGNRHSHLIGSIHMGS HDMAPLPTRLLKKLKNADALIVEADVSTSDTPFANLPACEALEERISEEQLQNLQHIS QEMGISPSLFSTQPLWQIAMVLQATQAQKLGLRAEYGIDYQLLQAAKQQHKPVIELEG AENQIAMLLQLPDKGLALLDDTLTHWHTNARLLQQMMSWWLNAPPQNNDITLPNTFSQ SLYDVLMHQRNLAWRDKLRAMPPGRYVVAVGALHLYGEGNLPQMLR" misc_feature complement(443710..444414) /gene="ybaP" /locus_tag="SF0427" /note="Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues; Region: Tiki; cd14789" /db_xref="CDD:350614" gene 444585..444980 /gene="ybaQ" /locus_tag="SF0428" /db_xref="GeneID:1027714" CDS 444585..444980 /gene="ybaQ" /locus_tag="SF0428" /note="Code: N; COG: COG3093" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706376.1" /db_xref="GeneID:1027714" /translation="MIQYVLASLFTGKQQLKTMKQATRKPTTPGDILLYEYLEPLDLK INELAELLHVHRNRVSALINNNRKLTTEMAFRLAKVFDTTVDFRLNLQAAVDLWEVEN NMRTQEELGRIETVAEYLARREERAKKVA" misc_feature 444657..444890 /gene="ybaQ" /locus_tag="SF0428" /note="addiction module antidote protein, HigA family; Region: antidote_HigA; TIGR02607" /db_xref="CDD:274228" misc_feature order(444687..444689,444699..444701,444774..444776) /gene="ybaQ" /locus_tag="SF0428" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:238045" misc_feature order(444696..444698,444771..444773) /gene="ybaQ" /locus_tag="SF0428" /note="salt bridge [active]" /db_xref="CDD:238045" misc_feature order(444717..444722,444753..444755,444762..444764, 444774..444779) /gene="ybaQ" /locus_tag="SF0428" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:238045" gene complement(445195..447699) /gene="copA" /locus_tag="SF0429" /db_xref="GeneID:1027751" CDS complement(445195..447699) /gene="copA" /locus_tag="SF0429" /note="Code: P; COG: COG2217" /codon_start=1 /transl_table=11 /product="copper exporting ATPase" /protein_id="NP_706377.1" /db_xref="GeneID:1027751" /translation="MSQTIDLNLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVT GTASAEQLIETIKQAGYDASVSHPKAKPLAESSIPSEALTAVSEALPAATADDDDSQQ LLLSGMSCASCVTRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYG AEAIEDDAKRRERQQETAVATMKRFRWQAIVALAVGIPVMVWGMIGDNMIVTADNRSL WLVIGLITLAVMVFASGHFYRSAWKSLLNGAATMDTLVALGTGVAWLYSMSVNLWPQW FPMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARLVTDEGEK SVPLAEVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGT VVQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAIFVPVVVVIALV SAAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDA DALQRASTLDTVVFDKTGTLTEGKPQVVAVKTFADVDEAQALRLAAALEQGSSHPLAR AILDKAGDMQLPQVNGFRTLRGLGVSGEAEGHALLLGNQALLNDQQVDTKAIEADISA QASQGATPVLLAIDGKAVALLAVRDPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANA IAKEAGIDEVIAGVLPDGKAEAIKRLQSEGRQVAMVGDGINDAPALAQADVGIAMGGG SDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWP FTGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKE" misc_feature complement(445198..447699) /gene="copA" /locus_tag="SF0429" /note="copper-exporting P-type ATPase CopA; Region: copA; PRK10671" /db_xref="CDD:182635" gene 447961..448893 /gene="ybaS" /locus_tag="SF0430" /db_xref="GeneID:1027752" CDS 447961..448893 /gene="ybaS" /locus_tag="SF0430" /note="Code: E; COG: COG2066" /codon_start=1 /transl_table=11 /product="glutaminase" /protein_id="NP_706378.1" /db_xref="GeneID:1027752" /translation="MLDANKLQQAVDQAYTQFHSLNGGQNADYIPFLANVPGQLAAVA IVTCDGNVYSAGDSDYRFALESISKVCTLALALEDVGPQAVQDKIGADPTGLPFNSVI ALELHGGKPLSPLVNAGAIATTSLINAENAEQRWQRILHIQQQLAGEQVALSDEVNQS EQTTNFHNRAIAWLLYSAGYLYCDAMEACDVYTRQCSTLINTVELATLGATLAAGGVN PLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRVGLPGKSGVGGGILAVVPGVMGI AAFSPPLDEEGNSVRGQKMVASVAKQLGYNVFKG" misc_feature 447961..448890 /gene="ybaS" /locus_tag="SF0430" /note="glutaminase; Reviewed; Region: PRK12356" /db_xref="CDD:237073" gene 448896..450188 /gene="ybaT" /locus_tag="SF0431" /db_xref="GeneID:1027742" CDS 448896..450188 /gene="ybaT" /locus_tag="SF0431" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="amino acid/amine transport protein" /protein_id="NP_706379.1" /db_xref="GeneID:1027742" /translation="MMNTEGNNGNKPLGLWNVVSIGIGAMVGAGIFALLGQAALLMEA STWGAFAFGGIVAMFSGYAYARLGASYPSNGGIIDFFRRGLGNGVFSLALSLLYLLTL AVSIAMVARAFGAYAVQFLHEGSQEEHLILLYALGIIAVMTLFNSLSNHAVGRLEVIL VGIKMMILLLLIIAGVWSLQPAHISVSAPPSSGAFFSCIGITFLAYAGFGMMANAADK VKDPQVIMPRAFLVAIGVTTLLYISLALVLLSDVSALELEKYADTAVAQAASPLLGHV GYVIVVIGALLATASGINANLFAVFNIMDNMGSERELPKLMNKSLWRQSTWGNIIVVV LIMLMTAALNLDSLASVASATFLICYLAVFVVAIRLRHDIHASLPILIVGTLVMLLVI VGFIYSLWSQGSRALIWIIGAILLSLIVAMVMKRNKTV" misc_feature 448896..450179 /gene="ybaT" /locus_tag="SF0431" /note="Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:440297" gene 450313..450720 /gene="ybbI" /locus_tag="SF0432" /db_xref="GeneID:1027740" CDS 450313..450720 /gene="ybbI" /locus_tag="SF0432" /note="Code: K; COG: COG0789" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator CueR" /protein_id="NP_706380.1" /db_xref="GeneID:1027740" /translation="MNISDVAKITGLTSKAIRFYEEKGLVTPPMRSENGYRTYTQQHL NELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSMR DQLLALANACPGDDSADCPIIENLSGCCHHRAG" misc_feature 450313..450717 /gene="ybbI" /locus_tag="SF0432" /note="HTH-type transcriptional regulator CueR; Region: PRK10227" /db_xref="CDD:182320" gene complement(450721..451176) /gene="ybbJ" /locus_tag="SF0433" /db_xref="GeneID:1027743" CDS complement(450721..451176) /gene="ybbJ" /locus_tag="SF0433" /note="Code: NO; COG: COG1585" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706381.2" /db_xref="GeneID:1027743" /translation="MELMVVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGLV VWLVPLGWEWQGVMFAILTLLAAWLWWKWLSRRVREQKHSDSHLNQRGQQLIGRRFVL ESPLVNGRGHMRVGDSSWPVSASEDLGAGTHVEVIAIEGITLHIRAVSS" misc_feature complement(450727..451167) /gene="ybbJ" /locus_tag="SF0433" /note="Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones]; Region: YbbJ; COG1585" /db_xref="CDD:441193" gene complement(451176..452093) /gene="ybbK" /locus_tag="SF0434" /db_xref="GeneID:1027753" CDS complement(451176..452093) /gene="ybbK" /locus_tag="SF0434" /note="Code: O; COG: COG0330" /codon_start=1 /transl_table=11 /product="protease" /protein_id="NP_706382.1" /db_xref="GeneID:1027753" /translation="MLIFIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPG LSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVS NLELAIINLTMTNIRTVLGSMELDEMLSQRDSINSRLLRIVDEATNPWGIKVTRIEIR DVRPPAELISSMNAQMKAERTKRAYILEAEGIRQAEILKAEGEKQSQILKAEGERQSA FLQAEARERSAEAEARATKMVSEAIASGDIQAVNYFVAQKYTEALQQIGSSSNSKVVM MPLEASSLMGSIAGIAELVKDSANKRTQP" misc_feature complement(451227..452090) /gene="ybbK" /locus_tag="SF0434" /note="Regulator of protease activity HflC, stomatin/prohibitin superfamily [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330" /db_xref="CDD:440099" gene 452239..452916 /gene="ybbL" /locus_tag="SF0435" /db_xref="GeneID:1026031" CDS 452239..452916 /gene="ybbL" /locus_tag="SF0435" /note="Code: EPGR; COG: COG1101" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein YbbL" /protein_id="NP_706383.1" /db_xref="GeneID:1026031" /translation="MQENSPLLQLQNVGYLAGDTKILNNINFSLRAGEFKLITGPSGC GKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI FPWQIRDQQPDPAIFLDFLERFALPDSILTKNIAELSGGEKQRISLIRNLQFMPKVLL LDEITSALDESNKHNVNEMIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQ EARYELA" misc_feature 452239..452913 /gene="ybbL" /locus_tag="SF0435" /note="putative ABC transporter ATP-binding protein YbbL; Provisional; Region: PRK10247" /db_xref="CDD:182331" gene 452876..453682 /gene="ybbM" /locus_tag="SF0436" /db_xref="GeneID:1027749" CDS 452876..453682 /gene="ybbM" /locus_tag="SF0436" /note="Code: R; COG: COG0390" /codon_start=1 /transl_table=11 /product="metal resistance protein" /protein_id="NP_706384.1" /db_xref="GeneID:1027749" /translation="MPEKCRKHAMNSHNITNESLALALMLVVVAILISHKEKLALEKD ILWSVGRAIIQLIIVGYVLKYIFSVDDASLTLLMVLFICFNAAWNAQKRSKYIAKAFI SSFIAITVGAGITLAVLILSGAIEFIPMQVIPVAGMIAGNAMVAVGLCYNNLGQRVIS EQQQIQEKLSLGATPKQASAILIRDSIRAALIPTVDSAKTVGLVSLPGMMSGLIFAGI DPVKAIKYQIMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVTQLKKK" misc_feature 452918..453655 /gene="ybbM" /locus_tag="SF0436" /note="TIGR00245 family protein; Region: TIGR00245" /db_xref="CDD:272982" gene complement(453745..454635) /gene="ybbN" /locus_tag="SF0437" /db_xref="GeneID:1027746" CDS complement(453745..454635) /gene="ybbN" /locus_tag="SF0437" /note="Code: O; COG: COG3118" /codon_start=1 /transl_table=11 /product="thioredoxin-like protein" /protein_id="NP_706385.1" /db_xref="GeneID:1027746" /translation="MSKKISTTESDSMSVENIVNINESNLQQVLEQSMTTPVLFYFWS ERSQHCLQLTPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPV DGFQGPQPEEAIRALLDKVLPREEELKAQQAMQLMQEGNYTDALPLLKDAWQLSNQNG EIGLLLAETLIALNRSEDAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADKPEIQQLQ QQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRKDLTAADGQTRKTFQEILAA LGTGDALASKYRRQLYALLY" misc_feature complement(454279..454566) /gene="ybbN" /locus_tag="SF0437" /note="ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria; Region: ybbN; cd02956" /db_xref="CDD:239254" misc_feature complement(454171..454260) /gene="ybbN" /locus_tag="SF0437" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" misc_feature complement(454030..454221) /gene="ybbN" /locus_tag="SF0437" /note="Tetratricopeptide repeat; Region: TPR_19; pfam14559" /db_xref="CDD:434038" misc_feature complement(454075..454158) /gene="ybbN" /locus_tag="SF0437" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" misc_feature complement(453748..454017) /gene="ybbN" /locus_tag="SF0437" /note="Tetratricopeptide repeat; Region: TPR_20; pfam14561" /db_xref="CDD:434039" misc_feature complement(453862..453957) /gene="ybbN" /locus_tag="SF0437" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" misc_feature complement(453751..453849) /gene="ybbN" /locus_tag="SF0437" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" gene complement(454660..455469) /gene="ybbO" /locus_tag="SF0438" /db_xref="GeneID:1027730" CDS complement(454660..455469) /gene="ybbO" /locus_tag="SF0438" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_706386.1" /db_xref="GeneID:1027730" /translation="MTHKATEILTGKVMQKSVLITGCSSGIGLESALELKRQGFHVLA GCRKPNDVERMNNMGFTGVLIDLDSPESVNRAADEVIALTDNCLYGIFNNAGFGMYGP LSTISRAQMEQQFSANFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYA ASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFTDNVNQTQSDKPVENPGIAARF TLGPEAVVDKVRHAFISEKPKMRYPVTLVTWAVMVLERLLPGRVMDKILQG" misc_feature complement(454663..455430) /gene="ybbO" /locus_tag="SF0438" /note="SDR family oxidoreductase; Region: PRK08017" /db_xref="CDD:181198" gene complement(455459..456084) /gene="tesA" /locus_tag="SF0440" /pseudo /db_xref="GeneID:1027758" misc_feature complement(455459..456084) /gene="tesA" /locus_tag="SF0440" /note="Similar to Escherichia coli K12 acyl-CoA thioesterase I; also functions as protease I gi: 1786702 (209 aa). BLAST with identity of 99% in 208 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 456052..456738 /gene="ybbA" /locus_tag="SF0439" /db_xref="GeneID:1027538" CDS 456052..456738 /gene="ybbA" /locus_tag="SF0439" /note="Code: R; COG: COG1136" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_706387.1" /db_xref="GeneID:1027538" /translation="MPAENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALVGE SGSGKSTLLAILAGLDDGSSGEVSLVGQPLHNMDEEARAKLRAKHVGFVFQSFMLIPT LNALENVELPALLRGESSAESRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLIMVTHDLQLAARCDRCLR LVNGQLQEEA" misc_feature 456052..456735 /gene="ybbA" /locus_tag="SF0439" /note="putative ABC transporter ATP-binding protein YbbA; Provisional; Region: PRK10584" /db_xref="CDD:182569" misc_feature 456178..456201 /gene="ybbA" /locus_tag="SF0439" /note="Walker A/P-loop; other site" /db_xref="CDD:213222" misc_feature order(456187..456192,456196..456204,456334..456336, 456562..456567,456664..456666) /gene="ybbA" /locus_tag="SF0439" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213222" misc_feature 456325..456336 /gene="ybbA" /locus_tag="SF0439" /note="Q-loop/lid; other site" /db_xref="CDD:213222" misc_feature 456490..456519 /gene="ybbA" /locus_tag="SF0439" /note="ABC transporter signature motif; other site" /db_xref="CDD:213222" misc_feature 456550..456567 /gene="ybbA" /locus_tag="SF0439" /note="Walker B; other site" /db_xref="CDD:213222" misc_feature 456574..456585 /gene="ybbA" /locus_tag="SF0439" /note="D-loop; other site" /db_xref="CDD:213222" misc_feature 456652..456672 /gene="ybbA" /locus_tag="SF0439" /note="H-loop/switch region; other site" /db_xref="CDD:213222" gene 456735..459150 /locus_tag="SF0441" /pseudogene="unknown" /db_xref="GeneID:1027754" gene complement(459863..460957) /gene="ybbB" /locus_tag="SF0442" /db_xref="GeneID:1023350" CDS complement(459863..460957) /gene="ybbB" /locus_tag="SF0442" /note="Code: R; COG: COG2603" /codon_start=1 /transl_table=11 /product="tRNA 2-selenouridine synthase" /protein_id="NP_706389.1" /db_xref="GeneID:1023350" /translation="MQERHTEQDYRALLIADTPIIDVRAPIEFEQGAMPAAINLPLMD NDERASVGTCYKQQGSDAALALGHKLVAGEIRQQRMYAWRAACLQNPQGILCCARGGQ RSHIVQRWLHEAGIDYPLVEGGYKALRQTAIQATIELAQKPIVLIGGCTGSGKTLLVQ QQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAAEMLKTDARQDLRLWVLEDES RMIGSNHLPECLRERMTQAAIAVVEDPFEIRLERLNEEYFLRMHHDFTHAYGDEQGWQ EYCEYLHHGLSAIKRRLGLQRYNELAAQLDTALTTQLTTGSTDGHLAWLVPLLKEYYD PMYRYQLEKKAEKVVFRGEWAEVAVWVKAQ" misc_feature complement(459866..460951) /gene="ybbB" /locus_tag="SF0442" /note="tRNA 2-selenouridine synthase; Provisional; Region: PRK11784" /db_xref="CDD:236982" gene complement(461026..461952) /gene="ybbS" /locus_tag="SF0443" /db_xref="GeneID:1027532" CDS complement(461026..461952) /gene="ybbS" /locus_tag="SF0443" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator AllS" /protein_id="NP_706390.1" /db_xref="GeneID:1027532" /translation="MFDPETLRTFIAVAETGSFSKAAERLCKTTATISYRIKLLEENT GVALFFRTTRSVTLTAAGEHLLSQARDWLSWLESMPSELQQVNDGVERQVNIVINNLL YNPQAVAQLLAWLNERYPFTQFHISRQIYMGVWDSLLYEGFSLAIGVTGTEALANTFS LDPLGSVQWRFVMAADHPLANVEEPLTEAQLRRFPAVNIEDSAGTLTKRVAWRLPGQK EIIVPDMETKIAAHLAGVGIGFLPKSLCQSMIDNQQLVSRVIPTMRPPSPLSLAWRKF GSCKAVEDIVTLFTQHRPEISGFLEIFGTPRS" misc_feature complement(461029..461952) /gene="ybbS" /locus_tag="SF0443" /note="HTH-type transcriptional activator AllS; Region: PRK10094" /db_xref="CDD:182237" gene 462182..462664 /gene="ybbT" /locus_tag="SF0444" /db_xref="GeneID:1027733" CDS 462182..462664 /gene="ybbT" /locus_tag="SF0444" /note="Code: E; COG: COG3194" /codon_start=1 /transl_table=11 /product="ureidoglycolate hydrolase" /protein_id="NP_706391.1" /db_xref="GeneID:1027733" /translation="MKLQVLPLSQEAFSAYGDVIETQQRDFFHINNGLVERYHDLALV EILEQDRTLISINRAQPANLPLTIHELERHPLGTQAFIPMKGEVFVVVVALGDDKPDL STLRAFITNGEQGVNYHRNVWHHPLFAWQRVTDFLTIDRGGSDNCDVESIPEQELCFA " misc_feature 462182..462661 /gene="ybbT" /locus_tag="SF0444" /note="ureidoglycolate lyase; Region: PRK03606" /db_xref="CDD:179606" gene 462742..463557 /gene="ybbU" /locus_tag="SF0445" /db_xref="GeneID:1026034" CDS 462742..463557 /gene="ybbU" /locus_tag="SF0445" /note="Code: K; COG: COG1414" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor AllR" /protein_id="NP_706392.1" /db_xref="GeneID:1026034" /translation="MTEVRRRGRPGQAEPVAQKGAQALERGIAILQYLEKSGGSSSVS DISLNLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGAAYIHNRDVLSVA GPFMRRLMLLSGETVNVAIRNGNEAVLIGQLECKSMVRMCAPLGSRLPLHASGAGKAL LYPLAEEELMSIILQTGLQQFTPTTLVDMPTLLKDLEQARELGYTVDKEEHVVGLNCI ASAIYDDVGRVVAAISISGPSSRLTEDRFVSQGELVRDTARDISTALGLKAHP" misc_feature 462742..463554 /gene="ybbU" /locus_tag="SF0445" /note="HTH-type transcriptional repressor AllR; Region: PRK10163" /db_xref="CDD:182279" gene 463647..465428 /gene="gcl" /locus_tag="SF0446" /db_xref="GeneID:1023368" CDS 463647..465428 /gene="gcl" /locus_tag="SF0446" /note="Code: EH; COG: COG0028" /codon_start=1 /transl_table=11 /product="glyoxylate carboligase" /protein_id="NP_706393.2" /db_xref="GeneID:1023368" /translation="MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIR HILARHVEGVSHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLV DLPFDVQVAEIEFDPDMYEPLPVYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINAD AAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHRYGNATLLASDMVFG IGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIGRVLCPDLGIVSDAKAALTLLVEVAQ EMQKAGRLPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT IGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPKRNVVAISGDFDFQ FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYG VDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSE LDNVMEFEDIADNVADAPTETCFMHYE" misc_feature 463650..465413 /gene="gcl" /locus_tag="SF0446" /note="Glyoxylate carboligase [Secondary metabolites biosynthesis, transport and catabolism]; Region: Gcl; COG3960" /db_xref="CDD:443160" mobile_element complement(465718..466485) /mobile_element_type="insertion sequence:IS1" gene complement(465733..466128) /gene="insB" /locus_tag="SF0447" /db_xref="GeneID:1027741" CDS complement(465733..466128) /gene="insB" /locus_tag="SF0447" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706394.1" /db_xref="GeneID:1027741" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQHIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(465736..466125) /gene="insB" /locus_tag="SF0447" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(466155..466430) /gene="insA" /locus_tag="SF0448" /db_xref="GeneID:1027750" CDS complement(466155..466430) /gene="insA" /locus_tag="SF0448" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706395.1" /db_xref="GeneID:1027750" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YIASQPGTHQKIIDMAMNGVGCRASARIMDVGLNTVLRHLKNSGRSR" misc_feature complement(<466158..466409) /gene="insA" /locus_tag="SF0448" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(466459..467130) /gene="ylbA" /locus_tag="SF0449" /db_xref="GeneID:1023403" CDS complement(466459..467130) /gene="ylbA" /locus_tag="SF0449" /note="Code: S; COG: COG3257" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706396.1" /db_xref="GeneID:1023403" /translation="MGYLNNVTGYREDLLANRAIVKHGNFALLTPDGLIKNIIPDFEN CDATILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVISGNITAKAEGKTFA LSEGGYLYCPPGSLMTFVNAQAEDSQIFLYKRRYVPVEGHAPWLFSGNASELERIHYE GMDDVILLDFLPKELGFDMNMHILSFAPGASHGYIETHVQEHGAYILSGQGVYNLGNA ANLLI" misc_feature complement(466480..467100) /gene="ylbA" /locus_tag="SF0449" /note="putative allantoin catabolism protein; Region: ura-cupin; TIGR03214" /db_xref="CDD:200251" gene complement(467141..468298) /gene="ylbB" /locus_tag="SF0450" /db_xref="GeneID:1027727" CDS complement(467141..468298) /gene="ylbB" /locus_tag="SF0450" /note="Code: E; COG: COG0624" /codon_start=1 /transl_table=11 /product="hydantoin utilization protein" /protein_id="NP_706397.4" /db_xref="GeneID:1027727" /translation="MTRLLYSPEWLETQQQFKKRMAASGLETRFDEVGNLYGRLSGTE YPQEVVLSGSHIDTVVNGGNLDGQFGALAAWLAIDWLKTQYGAPLRTVEVVAMAEEEG SRFPYVFWGSKNIFGLANPDDVRNICDAKGNSFADAMKACGFTLPNAPLTPRQAIKAF VELHIEQGCVLESNGQSIGVVNAIVGQRRYTVTLNGESNHAGTTPMGYRRDTVYAFSR ICHQSIEKAKKMGDPLVLTFGKVEPRPNTVNVVPGKTTFTIDCRHTDAAVLRDFTQQL ENDMRAICDEMDIGIDIDLWMDEEPVPMNKELVATLTELCEREKLNYRVMHSGAGHDA QIFAPRVPTCMIFIPSINGISHNPAERTNITDLAEGVKTLALMLYQLAWQE" misc_feature complement(467144..468298) /gene="ylbB" /locus_tag="SF0450" /note="allantoate amidohydrolase; Region: AllC; TIGR03176" /db_xref="CDD:274471" gene 468436..469023 /gene="ylbF" /locus_tag="SF0451" /db_xref="GeneID:1023367" CDS 468436..469023 /gene="ylbF" /locus_tag="SF0451" /codon_start=1 /transl_table=11 /product="carboxylase" /protein_id="NP_706398.1" /db_xref="GeneID:1023367" /translation="MAQGIRLGRFTVKQPQRYCLLRITPPSHPQPLAAAWMQRAEETG LFGPLAMAASDPLPAELRQFRHCFQAALNGVKTDWRHWLGKGPGLTPSHDDTLSGMLL AAWYYGALDARAGRPFFACSDNLQLVTTAVSVSYLRYAAQGYFASPLLHFVHALSCPK RTAVAIDSLLALGHTSGADTLLGFWLGQQLLQGKP" misc_feature 468679..468999 /gene="ylbF" /locus_tag="SF0451" /note="Protein of unknown function (DUF2877); Region: DUF2877; pfam11392" /db_xref="CDD:431864" gene 469020..469913 /gene="arcC" /locus_tag="SF0452" /db_xref="GeneID:1023396" CDS 469020..469913 /gene="arcC" /locus_tag="SF0452" /note="Code: E; COG: COG0549" /codon_start=1 /transl_table=11 /product="carbamate kinase" /protein_id="NP_706399.1" /db_xref="GeneID:1023396" /translation="MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARLARSYR LAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVT TVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQP RKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGL VILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGSMGPKVTAVSGYVRSRSKPAW IGALSRIEETLAGEAGTCISL" misc_feature 469020..469910 /gene="arcC" /locus_tag="SF0452" /note="carbamate kinase; Reviewed; Region: PRK09411" /db_xref="CDD:181831" misc_feature order(469038..469040,469044..469049,469167..469175, 469383..469385,469620..469628) /gene="arcC" /locus_tag="SF0452" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:239768" misc_feature order(469047..469049,469683..469688,469701..469703, 469710..469712,469785..469790,469797..469799) /gene="arcC" /locus_tag="SF0452" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:239768" misc_feature order(469047..469049,469683..469688,469701..469703, 469710..469712,469785..469790,469797..469799) /gene="arcC" /locus_tag="SF0452" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:239768" misc_feature order(469197..469199,469230..469232,469239..469244, 469251..469253,469263..469268,469275..469277, 469284..469289,469299..469301,469326..469334, 469338..469340,469512..469514,469521..469523, 469602..469604) /gene="arcC" /locus_tag="SF0452" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:239768" gene complement(470050..471117) /gene="purK" /locus_tag="SF0453" /db_xref="GeneID:1023380" CDS complement(470050..471117) /gene="purK" /locus_tag="SF0453" /note="Code: F; COG: COG0026" /codon_start=1 /transl_table=11 /product="5-(carboxyamino)imidazole ribonucleotide synthase" /protein_id="NP_706400.2" /db_xref="GeneID:1023380" /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPAAVPFQQS VITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLHLPTAPWQLLAD RSEWPAVFDRLGELAIVKRRTGGYDGRGQWSLRANETEQLPAECYGECIVEQGINFSG EVSLVGARGFDGSTVFYPLTHNLHQDGILRTSVAFPQANAQQQAQAEEMLSAIMQELG YVGVMAMECFVTPQGLLINELAPRVHNSGHWTQNGASISQFELHLRAITDLPLPQPVV NNPSVMINLIGSDVNYDWLKLPLVHLHWYDKEVRPGRKVGHLNLTDSDTSRLTATLEA LIPLLPPEYASGVIWAQSKFS" misc_feature complement(470113..471117) /gene="purK" /locus_tag="SF0453" /note="phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed; Region: PRK06019" /db_xref="CDD:235674" gene complement(471114..471623) /gene="purE" /locus_tag="SF0454" /db_xref="GeneID:1027747" CDS complement(471114..471623) /gene="purE" /locus_tag="SF0454" /note="Code: F; COG: COG0041" /codon_start=1 /transl_table=11 /product="5-(carboxyamino)imidazole ribonucleotide mutase" /protein_id="NP_706401.2" /db_xref="GeneID:1027747" /translation="MSSRNNPARVAIVMGSKSDWATMQFAVEIFEILNVPHHVEVVSA HRTPDKLFSFAESAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILATHDKELHQRLNGWRKAQTDEVL ENPDPRGAA" misc_feature complement(471126..471602) /gene="purE" /locus_tag="SF0454" /note="Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Region: PurE; COG0041" /db_xref="CDD:439811" gene complement(471741..472463) /gene="ybbF" /locus_tag="SF0455" /db_xref="GeneID:1027739" CDS complement(471741..472463) /gene="ybbF" /locus_tag="SF0455" /note="Code: S; COG: COG2908" /codon_start=1 /transl_table=11 /product="UDP-2,3-diacylglucosamine hydrolase" /protein_id="NP_706402.1" /db_xref="GeneID:1027739" /translation="MATLFIADLHLCVEEPAITAGFLRFLAGEARKADALYILGDLFE AWIGDDDPNPLHRQMAAAIKAVSDSGVPCYFIHGNRDFLLGKRFARESGMTLLPEEKV LELYGRRVLIMHGDTLCTDDAGYQAFRAKVHKPWLQMLFLALPLFVRKRIAARMRANS KEANSSKSLAIMDVNQNAVVSAMEKHQVQWLIHGHTHRPAVHELIANQQPAFRVVLGA WHTEGSMVKVTADDVELIHFPF" misc_feature complement(471744..472463) /gene="ybbF" /locus_tag="SF0455" /note="UDP-2,3-diacylglucosamine hydrolase; Provisional; Region: PRK05340" /db_xref="CDD:235420" misc_feature complement(order(471873..471875,471879..471881, 472122..472124,472224..472229,472341..472343, 472434..472436,472440..472442)) /gene="ybbF" /locus_tag="SF0455" /note="putative active site [active]" /db_xref="CDD:277343" misc_feature complement(order(471873..471875,471879..471881, 472122..472124,472227..472229,472341..472343, 472434..472436,472440..472442)) /gene="ybbF" /locus_tag="SF0455" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:277343" gene complement(472466..472960) /gene="ppiB" /locus_tag="SF0456" /db_xref="GeneID:1027535" CDS complement(472466..472960) /gene="ppiB" /locus_tag="SF0456" /note="Code: O; COG: COG0652" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase B" /protein_id="NP_706403.1" /db_xref="GeneID:1027535" /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV INGFMIQGGGFEPGMKQKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV VDNDFLNFSGESLQGWGYCVFAEVVDGMDVVDKIKGVATGRNGMHQDVPKEDVIIESV TVSE" misc_feature complement(472469..472960) /gene="ppiB" /locus_tag="SF0456" /note="peptidylprolyl isomerase B; Region: PRK10791" /db_xref="CDD:182734" misc_feature complement(order(472601..472603,472637..472642, 472664..472666,472688..472705,472808..472810, 472814..472819,472826..472828,472832..472834)) /gene="ppiB" /locus_tag="SF0456" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238901" gene 473134..474519 /gene="cysS" /locus_tag="SF0457" /db_xref="GeneID:1023360" CDS 473134..474519 /gene="cysS" /locus_tag="SF0457" /note="Code: J; COG: COG0215" /codon_start=1 /transl_table=11 /product="cysteinyl-tRNA synthetase" /protein_id="NP_706404.1" /db_xref="GeneID:1023360" /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHKDFDA LNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDL DQLQAGARVDVVDDKRNRMDFVLWKMSKEGEPSWPSPWGAGRPGWHIECSAMNCKQLG NHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDREKMSKSLGNFFT VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAG GEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLG LLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLE DGPQGTTWRRK" misc_feature 473134..474516 /gene="cysS" /locus_tag="SF0457" /note="Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: CysS; COG0215" /db_xref="CDD:439985" gene complement(474555..475064) /gene="ybcI" /locus_tag="SF0458" /db_xref="GeneID:1027756" CDS complement(474555..475064) /gene="ybcI" /locus_tag="SF0458" /note="Code: R; COG: COG1988" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706405.1" /db_xref="GeneID:1027756" /translation="MPTVITHAAVPLCIGLGLGSKGLLFAGIILAMLPDADVLSFKFG VAYGNVFGHRGFTHSLVFAFVVPLLCVLIGRRWFRAGLIRCWLFLTVSLLSHSLLDSV TTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSRYTTAYGHQVIISELMWVWLPGMLL MGMLWWRRR" misc_feature complement(474675..475052) /gene="ybcI" /locus_tag="SF0458" /note="Membrane-bound metal-dependent hydrolase YbcI, DUF457 family [General function prediction only]; Region: YbcI; COG1988" /db_xref="CDD:441591" gene complement(475172..475405) /gene="ybcJ" /locus_tag="SF0459" /db_xref="GeneID:1027734" CDS complement(475172..475405) /gene="ybcJ" /locus_tag="SF0459" /note="Code: S; COG: COG2501" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706406.4" /db_xref="GeneID:1027734" /translation="MIHRVSNMATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIAEG QVKVDGAVETRKRCKIVAGQTVSFAGHSVQVVA" misc_feature complement(475175..475384) /gene="ybcJ" /locus_tag="SF0459" /note="ribosome-associated protein YbcJ; Region: PRK11507" /db_xref="CDD:183166" misc_feature complement(order(475223..475225,475229..475252, 475271..475273,475277..475282,475289..475294, 475298..475303,475307..475309)) /gene="ybcJ" /locus_tag="SF0459" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:238095" gene complement(475386..476252) /gene="folD" /locus_tag="SF0460" /db_xref="GeneID:1027744" CDS complement(475386..476252) /gene="folD" /locus_tag="SF0460" /note="Code: H; COG: COG0190" /codon_start=1 /transl_table=11 /product="bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase" /protein_id="NP_706407.1" /db_xref="GeneID:1027744" /translation="MAAKIIDGKTIAQQVRSEVAQKVQARIAAGLRAPGLAVVLVGSN PASQIYVASKRKACEEVGFVSRSYDLPETTSEAELLELIDALNADNTIDGILVQLPLP AGIDNVKVLERIHPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTFGL NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVENADLLIVAVGKPGFIPG DWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTL QACVEYHDPQGE" misc_feature complement(475398..476252) /gene="folD" /locus_tag="SF0460" /note="bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD; Region: PRK10792" /db_xref="CDD:236760" gene 476700..477275 /gene="sfmA" /locus_tag="SF0461" /db_xref="GeneID:1023379" CDS 476700..477275 /gene="sfmA" /locus_tag="SF0461" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="type-1 fimbrial protein subunit A" /protein_id="NP_706408.1" /db_xref="GeneID:1023379" /translation="MESINEIEGIYMKLRFISSALAAALFAATGSYAAVVDGGTIHFE GELVNAACSVNTDSADQVVTLGQYRTDIFNAVGNTSALIPFTIQLNDCDPVVAANAAV AFSGQADAINDNLLAIVSSTNTTTATGVGIEILDNTSAILKPDGNSFSTNQNLIPGTN VLHFSARYKGTGTSASAGQANADATFIMRYE" misc_feature 476733..477272 /gene="sfmA" /locus_tag="SF0461" /note="type 1 fimbrial protein subunit FimA; Region: PRK15194" /db_xref="CDD:237920" gene 477495..478187 /gene="sfmC" /locus_tag="SF0462" /db_xref="GeneID:1023353" CDS 477495..478187 /gene="sfmC" /locus_tag="SF0462" /note="Code: N; COG: COG3121" /codon_start=1 /transl_table=11 /product="fimbrial chaperone protein FimC" /protein_id="NP_706409.1" /db_xref="GeneID:1023353" /translation="MMTKIKLLMLMIFYLIISASAHAAGGIALGATRIIYPADAKQTA VWIKNSHTNELFLVNSWIENSSGVKEKSFIITPPLFVSEPKSENTLRIIYTGPPLAAD RESLFWMNVKTIPSVDKNALNGRNVLQLAILSRMKLFLRPIQLQELPAEAPDTLKFSR SGNYINVHNPSPFYVTLVNLQVGSQKLGNAMAAPRVSSQIPLPSGVQGKLKFQTVNDY GSVTPVREVNLN" misc_feature 477495..478181 /gene="sfmC" /locus_tag="SF0462" /note="molecular chaperone FimC; Region: PRK15195" /db_xref="CDD:185117" gene 478218..478718 /locus_tag="SF0463" /db_xref="GeneID:1023348" CDS 478218..478718 /locus_tag="SF0463" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706410.1" /db_xref="GeneID:1023348" /translation="MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFL LENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMP CFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIAL LSSAHG" misc_feature 478245..>478715 /locus_tag="SF0463" /note="outer membrane usher protein FimD; Region: PRK15198" /db_xref="CDD:185120" mobile_element complement(478714..479481) /mobile_element_type="insertion sequence:IS1" gene complement(478729..479124) /gene="insB" /locus_tag="SF0464" /db_xref="GeneID:1023339" CDS complement(478729..479124) /gene="insB" /locus_tag="SF0464" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706411.1" /db_xref="GeneID:1023339" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(478732..479121) /gene="insB" /locus_tag="SF0464" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(479151..479426) /gene="insA" /locus_tag="SF0465" /db_xref="GeneID:1023351" CDS complement(479151..479426) /gene="insA" /locus_tag="SF0465" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706412.1" /db_xref="GeneID:1023351" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<479154..479405) /gene="insA" /locus_tag="SF0465" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(479460..479753) /locus_tag="SF0466" /db_xref="GeneID:1023382" CDS complement(479460..479753) /locus_tag="SF0466" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706413.1" /db_xref="GeneID:1023382" /translation="MYQSTIYRPNGKLSAPMRLVTMKPTSVIIMDTHPIIRMSIEVLL QKNSELQIVLKTDDYRITIDYLRTRPVDLIIMDIDLPGTDGFTFLKRVMLPTY" misc_feature complement(<479478..479690) /locus_tag="SF0466" /note="fimbriae biosynthesis transcriptional regulator FimZ; Region: PRK09935" /db_xref="CDD:182154" gene 479933..480009 /locus_tag="SF4444" /db_xref="GeneID:3161848" tRNA 479933..480009 /locus_tag="SF4444" /product="tRNA-Arg" /codon_recognized="AGA" /db_xref="GeneID:3161848" gene complement(480055..480816) /gene="envY" /locus_tag="SF0467" /db_xref="GeneID:1023377" CDS complement(480055..480816) /gene="envY" /locus_tag="SF0467" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="envelope protein" /protein_id="NP_706414.1" /db_xref="GeneID:1023377" /translation="MQLSSSEPCVVILTEKEVEVSVNNHATFTLPKNYLAAFACNNNV IELSTLNHVLITHINRNIINDYLLFLNKKLTCVKPWSRLATPVIACHSRTPEVFRLAT NHSKQQSSKPCEAELTRALLFTVLSNFLEQSRFIALLMYILRSSVRDSVCRIIQSDIQ HYWNLRIVASSLCLSPSLLKKKLKNENTSYSQIVTECRMRYAVQMLLMDNKNITQVAQ LCGYSSTSYFISVFKAFYSLTPLNYLAKQRQKVMW" misc_feature complement(480070..480795) /gene="envY" /locus_tag="SF0467" /note="DNA-binding transcriptional regulator GadX; Provisional; Region: PRK09978" /db_xref="CDD:137624" gene complement(480999..481889) /gene="ybcH" /locus_tag="SF0468" /db_xref="GeneID:1023347" CDS complement(480999..481889) /gene="ybcH" /locus_tag="SF0468" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706415.1" /db_xref="GeneID:1023347" /translation="MRKFIFVLLTLLLVSPFSFAMKGIIWQPQNRDSQVTDTQWQGLM SQLRFQGFDTLVLQWTRYGDAFTQPEQRTLLFKRAAAAQQTGLKLIVGLNADPEFFMH QKQSPAALESYLNRLLAADLQQARLWSAAPGITPDGWYISAEIDDLNWRSEAARQPLL TWLNNAQRLISDVSAKPVYISSFFAGNMSPDGYRQLLEQVKATGVNVWVQDGSGVDKL TAEQRERYLQASADCQSSAPASGIVYELFVAGKGKTFTAKPKPDAEIASLLAKRSSCG KDMLYFSLRYLPVAHGILEY" misc_feature complement(481002..481889) /gene="ybcH" /locus_tag="SF0468" /note="DUF4434 family protein; Region: PRK09936" /db_xref="CDD:182155" gene complement(481890..484858) /gene="nfrA" /locus_tag="SF0469" /pseudo /db_xref="GeneID:1027540" misc_feature complement(481890..484858) /gene="nfrA" /locus_tag="SF0469" /note="'Similar to Escherichia coli K12 bacteriophage N4 receptor, outer membrane protein gi: 1786780 (991 aa). BLAST with identity of 97% in 989 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene complement(484845..487082) /gene="nfrB" /locus_tag="SF0470" /db_xref="GeneID:1027690" CDS complement(484845..487082) /gene="nfrB" /locus_tag="SF0470" /codon_start=1 /transl_table=11 /product="bacteriophage N4 adsorption protein B" /protein_id="NP_706416.1" /db_xref="GeneID:1027690" /translation="MDWLLDVFATWLYGLKVIAITLAVIMFISGLDDFFIDVVYWVRR IKRKLSVYRRYPRMSYRELYKPDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHI FVGTYPNDPDTQRDVDEVCARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANF AFAGFILHDAEDVISPMELRLFNYLVERKDLIQIPVYPFEREWTHFTSMTYIDEFSEL HGKDVPVREALAGQVPSAGVGTCFSRRAVTALLADGNGIAFDVQSLTEDYDIGFRLKE KGMTEIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSTAVRQKSRWIIGI VFQGFKTHKWTSSLTLNYFLWRDRKGAISNFVSFLAMLVMIQLLLLLAYESLWPDAWH FLSIFSGSAWLMTLLWLNFGLMVNRIVQRVIFVTGYYGLTQGLLSVLRLFWGNLINFM ANWRVLKQVLQHGDPRRVAWDKTTHDFPSVTGDTRSLRPLGQILLENQVITEEQLDTA LRNRVEGLRLGGSMLMQGLISAEQLAQALAEQNGVAWESIDAWQIPSSLIAEMPASVA LHYAVLPLRLENDELIVGSEDGIDPVSLAALTRKVGRKVRYVIVLRGQIVTGLRHWYA RRRGHDPRAMLYNAVQHQWLTEQQTGEIWRQYVPHQFLFAEILTTLGHINRSAINVLL LRHERSSLPLGKFLVTEGVISQETLDRVLTIQRELQVSMQSLLLKAGLNTEQVAQLES ENEGE" misc_feature complement(484872..487064) /gene="nfrB" /locus_tag="SF0470" /note="phage adsorption protein NrfB; Region: nfrB; PRK11234" /db_xref="CDD:236884" gene complement(487232..488674) /gene="ybcZ" /locus_tag="SF0471" /db_xref="GeneID:1023354" CDS complement(487232..488674) /gene="ybcZ" /locus_tag="SF0471" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="sensor kinase CusS" /protein_id="NP_706417.2" /db_xref="GeneID:1023354" /translation="MVSKPFQRPFSLATRLTFFISLATIAAFFAFAWIIIHSVKVHFA EQDINDLKEISATLERVLNHPDETQARRLMTLEDIVSGYSNVLISLADSHGKTVYHSP GAPDIREFARDAIPDKDARGGEVYLLSGPTIMMPGHGHGHMEHSNWRMINLPVGPLVD GKPIYTLYIALSIDFHLHYINDLMNKLIMTASVISILIVFIVLLAVHKGHAPIRSVSR QIQNITSKDLDVRLDPQTVPIELEQLVLSFNHMIERIEDVFTRQSNFSADIAHEIRTP ITNLITQTEIALSQSRSQKELEDVLYSNLEELTRMAKMVSDMLFLAQADNNQLIPEKK MLNLADEVGKVFDFFEALAEDRGVELRFVGDKRQVAGDPLMLRRALSNLLSNALRYTP TRETIVVRCQTVDHQVQVSVENPGTPIAPEHLPRLFDRFYRVDPSRQRKGEGSGIGLA IVKSIVVAHKGTVAVTSDARGTRFVITLPA" misc_feature complement(487238..488674) /gene="ybcZ" /locus_tag="SF0471" /note="Cu(+)/Ag(+) sensor histidine kinase; Region: PRK09835" /db_xref="CDD:182101" gene complement(488664..489347) /gene="ylcA" /locus_tag="SF0472" /db_xref="GeneID:1023340" CDS complement(488664..489347) /gene="ylcA" /locus_tag="SF0472" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator CusR" /protein_id="NP_706418.1" /db_xref="GeneID:1023340" /translation="MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGD YDLIILDIMLPDVNGWDIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKP FAFAELLARVRTLLRRGAAVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLE FFLRHQGEVLPRSLIASQVWDMNFDSDTNAIDVAVKLLRGKIDNDFEPKLIQTVRGVG YMLEVPDGQ" misc_feature complement(488667..489347) /gene="ylcA" /locus_tag="SF0472" /note="DNA-binding transcriptional activator CusR; Provisional; Region: PRK09836" /db_xref="CDD:182102" gene 489504..490886 /gene="ylcB" /locus_tag="SF0473" /db_xref="GeneID:1023358" CDS 489504..490886 /gene="ylcB" /locus_tag="SF0473" /note="Code: MN; COG: COG1538" /codon_start=1 /transl_table=11 /product="copper/silver efflux system outer membrane protein CusC" /protein_id="NP_706419.1" /db_xref="GeneID:1023358" /translation="MSPCKLLPFCVALALTGCSLAPDYQRPVMPVPQQFSLSQNGLVN AADNYQNVGWRTFFVDNQVKTLISEALVNNRDLRMATLKVQEARAQYRLTDADRYPQL NGEGSGSWSGNLKGDSATTREFSTGLNASFDLDFFGRLKNMSEAERQNYLATEEAQRA VHILLVSNVAQSYFNQQLAYAQLQIAEETLRNYQQSYAFVEKQLLTGSSNVLALEQAR GVIESTRSDIAKRQGELAQANNALQLLLGSYGKLPQAQTVNSGSLQSVKLPAGLSSQI LLQRPDIMEAEHALMASNANIGAARAAFFPSISLTSGISTASSDLSSLFNASSGMWNF IPKIEIPIFNAGRNQANLDIAEIRQQQSVVNYEQKIQNAFKEVADALALRQSLDDQIS AQQRYLASLQITLQRARALYQHGAVSYLEVLDAERSLFATRQTLLDLNYARQVNEIYL YTALGGGWQQ" misc_feature 489504..490883 /gene="ylcB" /locus_tag="SF0473" /note="Cu(I)/Ag(I) efflux RND transporter outer membrane protein; Region: PRK09837" /db_xref="CDD:182103" gene 490910..491242 /gene="ylcC" /locus_tag="SF0474" /db_xref="GeneID:1023418" CDS 490910..491242 /gene="ylcC" /locus_tag="SF0474" /codon_start=1 /transl_table=11 /product="periplasmic copper-binding protein" /protein_id="NP_706420.1" /db_xref="GeneID:1023418" /translation="MKKALQVAMFSLFTVIGFNAQANEHHHETMSEAQPQVISATGVV KGVDLESKKITIHHDPIAAVNWPEMTMRFTITPQTKMSEIKTGDKVAFNFVQQGNLSL LQDIKVSQ" misc_feature 490910..491239 /gene="ylcC" /locus_tag="SF0474" /note="periplasmic copper-binding protein; Provisional; Region: PRK09838" /db_xref="CDD:182104" mobile_element complement(492504..493809) /mobile_element_type="insertion sequence:IS629" gene complement(492546..493214) /locus_tag="SF0476" /pseudogene="unknown" /db_xref="GeneID:1023344" gene complement(493429..493755) /locus_tag="SF0477" /db_xref="GeneID:1023424" CDS complement(493429..493755) /locus_tag="SF0477" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_706422.1" /db_xref="GeneID:1023424" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature complement(493465..493752) /locus_tag="SF0477" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 493808..494886 /locus_tag="SF0478" /pseudo /db_xref="GeneID:1023412" misc_feature 493808..494886 /locus_tag="SF0478" /note="Similar to Shigella flexneri Bifunctional tail protein sp: Q9XJP3 (624 aa). BLAST with identity of 96% in 392 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element complement(494885..496215) /mobile_element_type="insertion sequence:IS2" gene complement(494896..495687) /locus_tag="SF0479" /db_xref="GeneID:1023345" CDS complement(494896..495687) /locus_tag="SF0479" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion element IS2 transposase InsD" /protein_id="NP_706423.1" /db_xref="GeneID:1023345" /translation="MDGRRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELD GMPAINAKRVYRLMRQNALLLERKPAVSPSKRAHTGRVAVKESNQRWCSDGFEFCCDN GERLRVTFALDCCDREALHWARTTGGFNSETVQDVMLGAVERRFGNDLPSFPVEWLTD NGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTA AKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(494899..495684) /locus_tag="SF0479" /note="insertion element IS2 transposase InsD; Provisional; Region: PRK14702" /db_xref="CDD:237792" gene complement(495759..496169) /locus_tag="SF0480" /db_xref="GeneID:1023346" CDS complement(495759..496169) /locus_tag="SF0480" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_706424.1" /db_xref="GeneID:1023346" /translation="MIVLILVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMKNELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(495762..496124) /locus_tag="SF0480" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 496942..500085 /gene="ybdE" /locus_tag="SF0481" /db_xref="GeneID:1023408" CDS 496942..500085 /gene="ybdE" /locus_tag="SF0481" /note="Code: P; COG: COG3696" /codon_start=1 /transl_table=11 /product="cation efflux system protein CusA" /protein_id="NP_706425.1" /db_xref="GeneID:1023408" /translation="MIEWIIRRSVANRFLVLMGALFLSIWGTWTIINTPVDALPDLSD VQVIIKTSYPGQAPQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTD PYWARSRVLEYLNQVQGKLPAGVSAELGPDATGVGWIYEYALVDRSGKHDLADLRSLQ DWFLKYELKTIPDVAEVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAG GSSIELAEAEYMVRASGYLQTLDDFNHIVLKASENGVPVYLRDVAKVQIGPKMRRGIA ELNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRA IDNLSGKLLEEFIVVAVVCAPFLWHVRSALVAIISLPLGLCIAFIVMPFQGLNANIMS LGGIAIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPAL FISLLIITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGK IPPESSNPLNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQIN EGDLLYMPSTLPGISAAEAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMV ETTIQLKPQDQWRPGMTMDKIIEELDNTVRLPGLANLWVPPIRNRIDMLSTGIKSPIG IKVSGTVLADIDAMAEQIEEVARTVPGVASALAERLEGGRYINVEINREKAARYGMTV ADVQLFVTSAVGGAMVGETVEGIARYPINLRYPQSWRDSPQALRQLPILTPMKQQITL ADVADVKVSTGPSMLKTENARPTSWIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSV AFSGQFELLERANHKLKLMVPMTLMIIFVLLYLAFRRVGEALLIISSVPFALVGGIWL LWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEA LYHGAVLRVRPKAMTVAVIIAGLLPILWGTGAGSEVMSRIAAPMIGGMITAPLLSLFI IPAAYKLMWLHRHRVRN" misc_feature 496942..500079 /gene="ybdE" /locus_tag="SF0481" /note="AcrB/AcrD/AcrF family; Region: ACR_tran; cl47191" /db_xref="CDD:481531" gene 500186..501562 /gene="pheP" /locus_tag="SF0482" /db_xref="GeneID:1023406" CDS 500186..501562 /gene="pheP" /locus_tag="SF0482" /note="Code: E; COG: COG1113" /codon_start=1 /transl_table=11 /product="phenylalanine transporter" /protein_id="NP_706426.2" /db_xref="GeneID:1023406" /translation="MKNASTVSEDTASNQEPTLHRGLHNRHIQLIALGGAIGTGLFLG IGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYKYWGPFAGFL SGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNVRLYGET EFWFALIKVLAIIGMIGFGLWLLFSGYGGEKASIDNLWRYGGFFATGWNGLILSLAVI MFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSN SSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPKFLTR VSRRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRF RAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWIVFLFV AFKTLRRK" misc_feature 500186..501559 /gene="pheP" /locus_tag="SF0482" /note="phenylalanine transporter; Provisional; Region: PRK10249" /db_xref="CDD:236667" gene complement(501630..502877) /gene="ybdG" /locus_tag="SF0483" /db_xref="GeneID:1023355" CDS complement(501630..502877) /gene="ybdG" /locus_tag="SF0483" /note="Code: M; COG: COG0668" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_706427.2" /db_xref="GeneID:1023355" /translation="MQDLISQVEDLAGIEIDHTTSMVMIFGIIFLTAVVVHIILHWVV LRTFEKRAIASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAVFWLQKGTEAADILTTC AQLWIMMYALLSVFSLLDVILNLAQKFPAASQLPLKGIFQGIKLIGAILVGILMISLL IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGA VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSISIDVTSIRF LDEDEMQRLNKAHLLKPYLTSRHQEINEWNRQQGSTESVLNLRRMTNIGTFRAYLNEY LRNHPRIRKDMTLMVRQLAPGDNGLPLEIYAFTNTVVWLEYESIQADIFDHIFAIVEE FGLRLHQSPTGNDIRSLAGAFKQ" misc_feature complement(501690..502451) /gene="ybdG" /locus_tag="SF0483" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:459999" gene complement(502985..504976) /gene="nfnB" /locus_tag="SF0485" /pseudo /db_xref="GeneID:1023410" misc_feature complement(502985..504976) /gene="nfnB" /locus_tag="SF0485" /note="Similar to Escherichia coli K12 oxygen-insensitive NAD(P)H nitroreductase gi: 1786792 (218 aa). BLAST with identity of 98% in 663 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element complement(503321..504649) /mobile_element_type="insertion sequence:iso-IS10R" gene complement(503334..504542) /locus_tag="SF0484" /db_xref="GeneID:1023381" CDS complement(503334..504542) /locus_tag="SF0484" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_706428.1" /db_xref="GeneID:1023381" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPEQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature complement(503373..504428) /locus_tag="SF0484" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene complement(505070..505438) /gene="ybdF" /locus_tag="SF0486" /db_xref="GeneID:1023429" CDS complement(505070..505438) /gene="ybdF" /locus_tag="SF0486" /note="Code: S; COG: COG2315" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706429.1" /db_xref="GeneID:1023429" /translation="MDKQSLHETAKRLALELPFVELCWPFGPEFDVFKIGGKIFMLSS ELRGVPFINLKSDPQKSLLNQQIYPSIKPGYHMNKKHWISVYSGEEISEALLRDLIND SWNLVVDGLAKRDQKRVRPG" misc_feature complement(505073..505438) /gene="ybdF" /locus_tag="SF0486" /note="MmcQ/YjbR family DNA-binding protein; Region: PRK10250" /db_xref="CDD:182333" gene complement(505503..505751) /gene="ybdJ" /locus_tag="SF0487" /db_xref="GeneID:1023422" CDS complement(505503..505751) /gene="ybdJ" /locus_tag="SF0487" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706430.1" /db_xref="GeneID:1023422" /translation="MKHPLETLTTAAGILLMAFLSCLLLPAPALGLTLAQKLVTMFHL MDLSQLYTLLFCLWFLVLSAIEYFVLRFIWRRWFSLAD" misc_feature complement(505515..505748) /gene="ybdJ" /locus_tag="SF0487" /note="Protein of unknown function (DUF1158); Region: DUF1158; pfam06643" /db_xref="CDD:399557" gene complement(505817..506935) /gene="ybdK" /locus_tag="SF0488" /db_xref="GeneID:1023393" CDS complement(505817..506935) /gene="ybdK" /locus_tag="SF0488" /note="Code: S; COG: COG2170" /codon_start=1 /transl_table=11 /product="gamma-glutamyl:cysteine ligase" /protein_id="NP_706431.1" /db_xref="GeneID:1023393" /translation="MPLPDFHVSEPFTLGIELEMQVVNPPGYDLSQDSSMLIDAVKNK ITAGEVKHDITESMLELATDVCRDINQAAGQFSAMQKVVLQAAADHHLEICGGGTPPF QKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCASGDDAIYLLHGLSRFVPH FIALSAASPYMQGTDTRFAPSRPNIFSAFPDNGPMPWVSNWQQFEALFRCLSYTTMID SIKDLHWDIRPSPHFGTVEVRVMDTPLTLSHAVNMAGLIQATAHWLLTERPFKHQEKD YLLYKFNRFQACRYGLEGVITDPHTGDRRPLTEDTLRLLEKIAPSAHKIGASSAIEAL HRQVVSGLNEAQLMRDFVADGGSLIGLVKKHCEIWAGD" misc_feature complement(505820..506935) /gene="ybdK" /locus_tag="SF0488" /note="gamma-glutamyl:cysteine ligase; Provisional; Region: PRK13516" /db_xref="CDD:237407" mobile_element 507320..507801 /note="partial" /mobile_element_type="insertion sequence:IS150" gene 507366..507848 /locus_tag="SF0489" /db_xref="GeneID:1023441" CDS 507366..507848 /locus_tag="SF0489" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion element IS150 protein" /protein_id="NP_706432.1" /db_xref="GeneID:1023441" /translation="MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVA LYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLK VYEERGEAGLRALKIGTKRNIAISVDPEKAASALELSKDRRIEVRCTGNSGHYHLFFF " misc_feature 507393..507545 /locus_tag="SF0489" /note="Helix-turn-helix domain; Region: HTH_28; pfam13518" /db_xref="CDD:463908" misc_feature 507429..>507764 /locus_tag="SF0489" /note="IS630 family transposase; Region: transpos_IS630; NF033545" /db_xref="CDD:468076" mobile_element complement(507802..508785) /note="partial" /mobile_element_type="insertion sequence:IS600" gene complement(507845..508663) /locus_tag="SF0490" /db_xref="GeneID:1023409" CDS complement(507845..508663) /locus_tag="SF0490" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706433.1" /db_xref="GeneID:1023409" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA" misc_feature complement(507872..>508663) /locus_tag="SF0490" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" mobile_element complement(508786..510091) /mobile_element_type="insertion sequence:IS629" gene complement(508828..509711) /locus_tag="SF0491" /pseudogene="unknown" /db_xref="GeneID:1023416" gene complement(509711..510037) /locus_tag="SF0492" /db_xref="GeneID:1027541" CDS complement(509711..510037) /locus_tag="SF0492" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_706435.1" /db_xref="GeneID:1027541" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature complement(509747..510034) /locus_tag="SF0492" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(510089..510310) /locus_tag="SF0493" /db_xref="GeneID:1023398" CDS complement(510089..510310) /locus_tag="SF0493" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706436.1" /db_xref="GeneID:1023398" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKA" misc_feature complement(510095..510304) /locus_tag="SF0493" /note="Transposase; Region: HTH_Tnp_1; pfam01527" /db_xref="CDD:426308" mobile_element complement(510091..510374) /note="partial" /mobile_element_type="insertion sequence:IS600" mobile_element 510375..511335 /note="partial" /mobile_element_type="insertion sequence:IS150" gene 510460..511311 /locus_tag="SF0494" /db_xref="GeneID:1026045" CDS 510460..511311 /locus_tag="SF0494" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion element IS150 protein InsB" /protein_id="NP_706437.1" /db_xref="GeneID:1026045" /translation="MKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVK KRIGEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRG EVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSER PVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCL DNAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRN QTYMPRV" misc_feature <510463..511284 /locus_tag="SF0494" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 511407..511559 /locus_tag="SF0494a" /db_xref="GeneID:16608305" CDS 511407..511559 /locus_tag="SF0494a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439230.1" /db_xref="GeneID:16608305" /translation="MLTKYALVAVIVLCLTVLGFTLLAGDSLCEFTVKERNIEFRAVL AYEPKK" misc_feature 511407..511556 /locus_tag="SF0494a" /note="Hok/gef family; Region: HOK_GEF; cl27487" /db_xref="CDD:452751" gene complement(512184..512813) /gene="entD" /locus_tag="SF0495" /db_xref="GeneID:1023411" CDS complement(512184..512813) /gene="entD" /locus_tag="SF0495" /note="Code: Q; COG: COG2977" /codon_start=1 /transl_table=11 /product="enterobactin synthase multienzyme complex phosphopantetheinyltransferase" /protein_id="NP_706438.2" /db_xref="GeneID:1023411" /translation="MVDMKTTHTSLPFAGHTLHFVEFDPANFCEQDLLWLPHYAQLQH AGRKRKTEHLAGRIAAVYALREYGYKCVPAIGELRQPVWPAEVYGSISHCGATALAVV SRQPIGVDIEEIFSAQTATELTDNIITPAEHERLADCGLAFSLALTLAFSAKESAFKA SEIQTDAGFLDYQIISWNKQQVIIHRENEMFAVHWQIKEKIVITLCQHD" misc_feature complement(512193..512813) /gene="entD" /locus_tag="SF0495" /note="enterobactin synthase subunit EntD; Region: PRK10251" /db_xref="CDD:182334" gene complement(512979..515219) /gene="fepA" /locus_tag="SF0496" /db_xref="GeneID:1023390" CDS complement(512979..515219) /gene="fepA" /locus_tag="SF0496" /note="Code: P; COG: COG1629" /codon_start=1 /transl_table=11 /product="outer membrane receptor FepA" /protein_id="NP_706439.1" /db_xref="GeneID:1023390" /translation="MNKKIHSLALLVNLGIYGVAQAQEPTDTPVSHDDTIVVTAAEQN LQAPGVSTITADEIRKNPVARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRGMGPE NTLILIDGKPVSSRNSVRQGWRGERDTRGDTSWVPPEMIERIEVLRGPAAARYGNGAA GGVVNIITKKGSGEWHGSWDAYFNAPEHKEEGATKRTNFSLTGPLGDEFSFRLYGNLD KTQADAWDINQGHQSARAGTYATTLPAGREGVINKDINGVVRWDFAPLQSLELEAGYS RQGNLYAGDTQNTNSDAYTRSKYGDETNRLYRQNYALTWNGGWDNGVTTSNWVQYEHT RNSRIPEGLAGGTEGKFNEKATQDFVDIDLDDVMLHSEVNLPIDFLVNQTLTLGTEWN QQRMKDLSSNTQALTGTNTGGAIDGVSATDRSPYSKAEIFSLFAENNMELTDSTIVTP GLRFDHHSIVGNNWSPALNISQGLGDDFTLKIGIARAYKAPSLYQTNPNYILYSKGQG CYASAGGCYLQGNDDLKVETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGYVAVG QNAVGTDLYQWDNVPKAVVEGLEGSLNVPVSETVMWTNNITYMLKSENKTTGDRLSII PEYTLNSTLSWQAREDLSMQTTFTWYGKQQPKKYNYKGQPAVGPETKEISPYSIVGLS ATWDVTKNVSLTGGVDNLFDKRLWRAGNAQTTGDLAGANYIAGAGAYTYNEPGRTWYM SINTHF" misc_feature complement(512982..515219) /gene="fepA" /locus_tag="SF0496" /note="FepA family TonB-dependent siderophore receptor; Region: PRK13524" /db_xref="CDD:237410" gene 515462..516664 /gene="fes" /locus_tag="SF0497" /db_xref="GeneID:1023384" CDS 515462..516664 /gene="fes" /locus_tag="SF0497" /note="Code: P; COG: COG2382" /codon_start=1 /transl_table=11 /product="enterobactin/ferric enterobactin esterase" /protein_id="NP_706440.1" /db_xref="GeneID:1023384" /translation="MTALKVGSESWWQSKHGPEWQRLNDEMFEVTFWWRDPQGSEEYS TIKRVWVYITGVTDHHQNSQPQSMQRIAGTDVWQWTTQLNANWRGSYCFIPTERDDIF SAPSPDRLELREGWRKLLPQAIADPLNPQSWKGGLGHAVSALEMPQAPLQPGWDCPQA PEIPAKEIIWKSERLKNSRRVWIFTTGDVTAEERPLAVLLDGEFWAQSMPVWPVLTSL THRQQLPPAVYVLIDAIDTTHRAHELPCNADFWLAVQQELLPLVKVIAPFSDRADRTV VAGQSFGGLSALYAGLHWPERFGCVLSQSGSYWWPHRGGQQEGVLLEKLKAGEVSAEG LRIVLEAGIREPMIMRANQALYAQLHPIKESIFWRQVDGGHDALCWRGGLMQGLIDLW QPLFHDRS" misc_feature 515462..516646 /gene="fes" /locus_tag="SF0497" /note="enterobactin/ferric enterobactin esterase; Provisional; Region: PRK10439" /db_xref="CDD:236695" gene 516881..520726 /gene="entF" /locus_tag="SF0498" /db_xref="GeneID:1023397" CDS 516881..520726 /gene="entF" /locus_tag="SF0498" /note="Code: Q; COG: COG1020" /codon_start=1 /transl_table=11 /product="enterobactin synthase subunit F" /protein_id="NP_706441.1" /db_xref="GeneID:1023397" /translation="MSQHLPLVAAQPGIWMAEKLSDLPSAWSVAHYVELTGEVDAPLL ARAVVAGLAQADTLRMRFTEDNGEVWQWVDDALIFELPEIIDLRTNIDPHGTAQALML ADLQQDLRVDSGKPLVFHQLIQVADNRWYWYQRYHHLLVDGFSFPAITRQIANIYCAL LRGEPTPASPFTPFADVVEEYQQYRESEAWQRDAAFWVEQRRQLPPPASLSPAPLAGR SASADILRLKMEFTDGEFRQLATQLSGVQRTDLALALTALWLGRLCNRMDYAAGFIFM RRLGSAALTATGPVLNVLPLGIHIAAQETLPELATRLATRLAAQLKKMRRHQRYDAEQ IVRDSGRAAGDEPLFGPVLNIKVFDYQLDIPGVQAQTHTLATGPVNDLELALFPDEHG DLSIEILANKQRYDEPTLIQHAERLKMLIAQFAADPALLCGDVDIMLPGEYAQLAQIN ATQVEIPETTLSALVAEQAAKTPDAPALADARYLFSYREMHEQVVALANLLRERGVKP GDSVAVALPRSVFLTLALHAIVEAGAAWLPLDTGYPDDRLKMMLEDARPSLLITTDDQ LPRFSDVPNLTNLCYNAPLTPQGSAPLQLSQPHHTAYIIFTSGSTGRPKGVMVGQTAI VNRLLWMQNHYPLTGEDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAM QQFFAEYGVTTTHFVPSMLAAFVASLTPQTARQSCVTLKQVFCSGEALPADLCREWQQ LTGAPLHNLYGPTEAAVDVSWYPAFGEELAQVRGSSVPIGYPVWNTGLRILDAMMHPV PPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDNGAVEY LGRSDDQLKIRGQRIELGEIDRVMQALPDVKQAVTHACVINQAAATGGDARQLVGYLV SQSGLPLDTSALQAQLRETLPPHMVPVVLLQLPQLPLSANGKLDRKALPLPELKAQAP GRAPKAGSETIIAAAFASLLGCDVQDADADFFALGGHSLLAMKLAAQLSRQFARQVTP GQVMVASTVAKLATIIDGEEDSSRRMGFETILPLREGNGPTLFCFHPASGFAWQFSVL SRYLDPQWSIIGIQSPRPHGPMQTATNLDEVCEAHLATLLEQQPHGIAARLRARGEQV AFLGLLDTWPPETQNWQEKEANGLDPEVLAEINREREAFLAAQQGSTSTELFTTIEGN YADAVRLLTTAHSVPFDGKATLFVAERTLQEGMSPERAWSPWIAELDIYRQDCAHVDI ISPGAFVKIGPIIRATLNR" misc_feature 516881..520720 /gene="entF" /locus_tag="SF0498" /note="enterobactin non-ribosomal peptide synthetase EntF; Region: entF; PRK10252" /db_xref="CDD:236668" mobile_element 520755..521522 /mobile_element_type="insertion sequence:IS1" gene 520810..521085 /gene="insA" /locus_tag="SF0499" /db_xref="GeneID:1023417" CDS 520810..521085 /gene="insA" /locus_tag="SF0499" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706442.1" /db_xref="GeneID:1023417" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 520831..>521082 /gene="insA" /locus_tag="SF0499" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 521112..521507 /gene="insB" /locus_tag="SF0500" /db_xref="GeneID:1023419" CDS 521112..521507 /gene="insB" /locus_tag="SF0500" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706443.1" /db_xref="GeneID:1023419" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 521115..521504 /gene="insB" /locus_tag="SF0500" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 521718..522851 /gene="fepE" /locus_tag="SF0501" /pseudo /db_xref="GeneID:1023402" misc_feature 521718..522851 /gene="fepE" /locus_tag="SF0501" /note="Similar to Escherichia coli K12 ferric enterobactin (enterochelin) transport gi: 1786802 (378 aa). BLAST with identity of 97% in 378 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(522848..523663) /gene="fepC" /locus_tag="SF0502" /db_xref="GeneID:1023450" CDS complement(522848..523663) /gene="fepC" /locus_tag="SF0502" /note="Code: PH; COG: COG1120" /codon_start=1 /transl_table=11 /product="iron-enterobactin ABC transporter ATP-binding protein" /protein_id="NP_706444.1" /db_xref="GeneID:1023450" /translation="MTESVARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGC GKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELV ARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQ ETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALR EGKIVAQGAPKEIVTAELIERIYGLRCMIIDDPVAGMPLVVPLGRTAPSTANS" misc_feature complement(522869..523663) /gene="fepC" /locus_tag="SF0502" /note="iron-enterobactin ABC transporter ATP-binding protein; Region: PRK10253" /db_xref="CDD:182336" gene complement(523660..524652) /gene="fepG" /locus_tag="SF0503" /db_xref="GeneID:1023386" CDS complement(523660..524652) /gene="fepG" /locus_tag="SF0503" /note="Code: PH; COG: COG0609" /codon_start=1 /transl_table=11 /product="iron-enterobactin ABC transporter permease" /protein_id="NP_706445.1" /db_xref="GeneID:1023386" /translation="MIYVSRRLLITCLLLISACVVAGIWGLRSGAVTLEISQVFAALM GDAPRSMTMVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWS GVLVAMVLFGQDLTAIALAAMVGGIITSLLVWLLAWRNGIDTFRLIIIGIGVRAMLVA FNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAATLLVRRMRLLE MGDDTACALGVSVERSRLLMMLVAVVLTAAATALAGPISFIALVAPHIARRISGTARW GLTQAALCGALLLLAAVLCAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK" misc_feature complement(523663..524652) /gene="fepG" /locus_tag="SF0503" /note="iron-enterobactin ABC transporter permease; Region: PRK10440" /db_xref="CDD:182463" misc_feature complement(order(523828..523830,523849..523851, 523972..523980,523984..524001,524005..524010, 524014..524022,524026..524031,524392..524400, 524410..524412)) /gene="fepG" /locus_tag="SF0503" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119348" misc_feature complement(order(523684..523686,523693..523698, 523705..523707,523714..523719,523726..523728, 523879..523881,524107..524109,524116..524121, 524155..524157,524161..524166,524173..524175, 524182..524187,524194..524199,524206..524211, 524215..524217,524374..524376,524389..524391, 524395..524397)) /gene="fepG" /locus_tag="SF0503" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature complement(order(523735..523737,523759..523761, 523891..523893,523903..523905,524077..524079, 524155..524157)) /gene="fepG" /locus_tag="SF0503" /note="putative PBP binding regions [active]" /db_xref="CDD:119348" gene complement(524649..525665) /gene="fepD" /locus_tag="SF0504" /db_xref="GeneID:1023404" CDS complement(524649..525665) /gene="fepD" /locus_tag="SF0504" /note="Code: PH; COG: COG0609" /codon_start=1 /transl_table=11 /product="iron-enterobactin ABC transporter permease" /protein_id="NP_706446.1" /db_xref="GeneID:1023404" /translation="MEVRISGSVAVTRAIAVPGLLLLLIIATALSLLIGAKSLPASVV LEAFSGTCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGLLGVN AGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGSQGGGQLSPVRLTLAGV ALAAVLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLS RALNSLSLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGLMMPHMARW LVGADHRWSLPVTLLATPALLLFADIIGRVIVPGELRVSVVSAFIGAPVLIFLVRRKT RGGA" misc_feature complement(524652..525650) /gene="fepD" /locus_tag="SF0504" /note="Fe(3+)-siderophore ABC transporter permease; Region: PRK10441" /db_xref="CDD:182464" misc_feature complement(order(524820..524822,524841..524843, 524964..524972,524976..524993,524997..525002, 525006..525014,525018..525023,525390..525398, 525408..525410)) /gene="fepD" /locus_tag="SF0504" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119348" misc_feature complement(order(524676..524678,524685..524690, 524697..524699,524706..524711,524718..524720, 524871..524873,525099..525101,525108..525113, 525144..525146,525150..525155,525162..525164, 525171..525176,525183..525188,525195..525200, 525204..525206,525372..525374,525387..525389, 525393..525395)) /gene="fepD" /locus_tag="SF0504" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature complement(order(524727..524729,524751..524753, 524883..524885,524895..524897,525069..525071, 525144..525146)) /gene="fepD" /locus_tag="SF0504" /note="putative PBP binding regions [active]" /db_xref="CDD:119348" gene 525764..526996 /gene="ybdA" /locus_tag="SF0505" /db_xref="GeneID:1023447" CDS 525764..526996 /gene="ybdA" /locus_tag="SF0505" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="enterobactin exporter EntS" /protein_id="NP_706447.1" /db_xref="GeneID:1023447" /translation="MNKQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI QMMTHSTWQVGLSVTLTGGAMFVGLMVGGVLADRYERKKVILLARGTCGIGFIGLCLN ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATSALVGRENLMQAGAITMLTVRLGSV ISPMIGGLLLATGGVAWNYGLAAAGTFITLLPLLSLPELPPPPQPLEHPLKSLLAGFR FLLASPLLGGLLTMASAVLVLYPALADNWQMSAAQIGFLYAAIPLGAAIGALTSGKLA HSARPGLLMLLSTLGSFLAIGLFGLMPMWILGVVCLALFGWLSAVSSLLQYTMLQTQT PEAMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVL VELRRFRQTPPQVTASDS" misc_feature 525764..526993 /gene="ybdA" /locus_tag="SF0505" /note="enterobactin transporter EntS; Region: PRK10489" /db_xref="CDD:236700" gene complement(527000..527956) /gene="fepB" /locus_tag="SF0506" /db_xref="GeneID:1023366" CDS complement(527000..527956) /gene="fepB" /locus_tag="SF0506" /note="Code: P; COG: COG0614" /codon_start=1 /transl_table=11 /product="iron-enterobactin ABC transporter substrate-binding protein" /protein_id="NP_706448.1" /db_xref="GeneID:1023366" /translation="MRLAPLYRNALLLTGLLLSGIAVVQAADWPRQITDSRGTHTLES QPQRIVSTSVTLTGSLLAIDAPVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLY IGEPSAEAVAAQMPDLILISATGGDSALALYDQLSTIAPTLIINYDDKSWQSLLTQLG EITGHEKQAAERIAQFDKQLAAAKEQIKLPPQPVTAIVYTAAAHSANLWTPESAQGQM LEQLGFTLAKLPAGLNASQSQGKRHDIIQLGGENLAAGLNGESLFLFAGDQKDADAIY ANPLLAHLPAVQNKQVYALGTETFRLDYYSAMQVLERLKALF" misc_feature complement(527003..527893) /gene="fepB" /locus_tag="SF0506" /note="iron-enterobactin transporter periplasmic binding protein; Provisional; Region: PRK10957" /db_xref="CDD:236806" gene 528248..529423 /gene="entC" /locus_tag="SF0507" /pseudo /db_xref="GeneID:1023391" misc_feature 528248..529423 /gene="entC" /locus_tag="SF0507" /note="'Similar to Escherichia coli K12 isochorismate hydroxymutase 2, enterochelin biosynthesis gi: 1786809 (392 aa). BLAST with identity of 97% in 392 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene 529433..531043 /gene="entE" /locus_tag="SF0508" /db_xref="GeneID:1023457" CDS 529433..531043 /gene="entE" /locus_tag="SF0508" /note="Code: Q; COG: COG1021" /codon_start=1 /transl_table=11 /product="2,3-dihydroxybenzoate-AMP ligase" /protein_id="NP_706449.1" /db_xref="GeneID:1023457" /translation="MSIPFTRWPEEFARRYREKGYWQDLPLTDILTRHAASDSIAVID GERQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFFALLKLGVAPVL ALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVAEHSSIRVVQLHNDSGE HNLQDAINHPAEGFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSAEIC QFTQQTRYLCSIPAAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIAKHQVNVT ALVPPAVSLWLQALAEGESRAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGM AEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFR GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEDIENL LLSHPAVIYAALVSMENELMGEKSCAYLVVKEPLRAVQVRRFLREQGIAEFKLPDRVE CVDSLPLTAVGKVDKKQLRQWLASRASA" misc_feature 529433..531040 /gene="entE" /locus_tag="SF0508" /note="(2,3-dihydroxybenzoyl)adenylate synthase; Region: entE; PRK10946" /db_xref="CDD:236803" gene 531057..531914 /gene="entB" /locus_tag="SF0509" /db_xref="GeneID:1027539" CDS 531057..531914 /gene="entB" /locus_tag="SF0509" /note="Code: Q; COG: COG1535" /codon_start=1 /transl_table=11 /product="2,3-dihydro-2,3-dihydroxybenzoate synthetase" /protein_id="NP_706450.1" /db_xref="GeneID:1027539" /translation="MAIPKLQAYALPESHDIPQNKVDWAFEPQRAALLIHDMQDYFVS FWGENCPMMEQVIANIAALRDYCKQHNIPVYYTAQPKEQSDEDRALLNDMWGPGLTRS PEQQKVVDRLTPDADDTVLVKWRYSAFHRSPLEQMLKESGRNQLIITGVYAHIGCMTT ATDAFMRDIKPFMVADALADFSRDEHLMSLKYVAGRSGRVVMTEELLPAPIPASKAAL REVILPLLDESDEPFDDDNLIDYGLDSVRMMALAARWRKVHGDIDFVMLAKNPTIDAW WKLLSREVK" misc_feature 531060..531668 /gene="entB" /locus_tag="SF0509" /note="Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological...; Region: isochorismatase; cd01013" /db_xref="CDD:238495" misc_feature order(531063..531065,531180..531182,531339..531341, 531432..531434,531510..531512,531519..531521, 531597..531599) /gene="entB" /locus_tag="SF0509" /note="hydrophobic substrate binding pocket [active]" /db_xref="CDD:238495" misc_feature order(531165..531167,531291..531293,531318..531320, 531423..531425,531510..531512,531522..531524) /gene="entB" /locus_tag="SF0509" /note="active site" /db_xref="CDD:238495" misc_feature 531507..531512 /gene="entB" /locus_tag="SF0509" /note="conserved cis-peptide bond [active]" /db_xref="CDD:238495" misc_feature 531702..531881 /gene="entB" /locus_tag="SF0509" /note="Phosphopantetheine attachment site; Region: PP-binding; pfam00550" /db_xref="CDD:425746" gene 531914..532660 /gene="entA" /locus_tag="SF0510" /db_xref="GeneID:1023437" CDS 531914..532660 /gene="entA" /locus_tag="SF0510" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase" /protein_id="NP_706451.2" /db_xref="GeneID:1023437" /translation="MDFSGKNVWVTGAGKGIGYATALTFVEAGAKVTGFDQAFTQEQY PFATEVMDVADAGQVAQVCQRLLAETERLDVLINAAGILRMGATDQLSKEDWQQTFAV NVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTARIGMSAYGASKAALKSLALSVGL ELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEI ANTILFLASDLASHITLQDIVVDGGSTLGA" misc_feature 531914..532657 /gene="entA" /locus_tag="SF0510" /note="2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated; Region: PRK08220" /db_xref="CDD:236190" gene 532663..533076 /gene="ybdB" /locus_tag="SF0511" /db_xref="GeneID:1023439" CDS 532663..533076 /gene="ybdB" /locus_tag="SF0511" /note="Code: Q; COG: COG2050" /codon_start=1 /transl_table=11 /product="thioesterase" /protein_id="NP_706452.1" /db_xref="GeneID:1023439" /translation="MIWKRHLTLDELNATSDNTMVAHLGIVYTLLGDDVLEAEMPVDT RTHQPFGLLHGGASAALAETLGSMAGFMMTRDGQCVVGTELNATHHRPVSEGKVRGVC QPLHLGRQNQSWEIVVFDEQGRRCCTCRLGTAVLG" misc_feature 532663..533073 /gene="ybdB" /locus_tag="SF0511" /note="proofreading thioesterase EntH; Region: PRK10254" /db_xref="CDD:182337" misc_feature order(532819..532821,532906..532908,532927..532938) /gene="ybdB" /locus_tag="SF0511" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:239527" misc_feature order(532822..532824,532828..532830,532837..532839, 532909..532923,532927..532929) /gene="ybdB" /locus_tag="SF0511" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:239527" misc_feature order(532825..532827,532849..532854,532861..532866, 532906..532908) /gene="ybdB" /locus_tag="SF0511" /note="PHB binding site [active]" /db_xref="CDD:239527" gene 533257..535362 /gene="cstA" /locus_tag="SF0512" /db_xref="GeneID:1023458" CDS 533257..535362 /gene="cstA" /locus_tag="SF0512" /note="Code: T; COG: COG1966" /codon_start=1 /transl_table=11 /product="carbon starvation protein A" /protein_id="NP_706453.1" /db_xref="GeneID:1023458" /translation="MNKSGKYLVWTVLSVMGAFALGYIALNRGEQINALWIVVASVCI YLIAYRFYGLYIAKNVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAG VIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYLRYLRPGRI GEVSVIGLVFLIFAIISGGWVAESPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGNLFPFLFITIA CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA MNSPMAVLAPAGTADVVASAAQVVSSWGFSITPDTLNQIASEVGEQSIISRAGGAPTL AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG LKRTDSLPANLLATALCVLAWGYFLHQSVVDPLGGINTLWPLFGIANQMLAGMALMLC AVVLFKMKRQRYAWVALVPTAWLLICTLTADWLKAFSPDAKVGFLVIANKFQAMIDSG NIPSQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLALFSIKTALAALKDPKPTAKETP YEPMPENVEEIVAQAKGAH" misc_feature 533257..535359 /gene="cstA" /locus_tag="SF0512" /note="carbon starvation protein CstA; Region: PRK15015" /db_xref="CDD:184976" gene 535544..535741 /locus_tag="SF0513" /db_xref="GeneID:1023461" CDS 535544..535741 /locus_tag="SF0513" /note="Code: S; COG: COG2879" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706454.1" /db_xref="GeneID:1023461" /translation="MFDSLAKAGKYLGQAAKLMIGMPDYDNYVEHMRVNHPDQTPMTY EEFFRERQDARYGGKGGARCC" misc_feature 535544..535738 /locus_tag="SF0513" /note="Uncharacterized short protein YbdD, DUF466 family [Function unknown]; Region: YbdD; COG2879" /db_xref="CDD:442126" gene complement(535751..536839) /gene="ybdH" /locus_tag="SF0514" /db_xref="GeneID:1026052" CDS complement(535751..536839) /gene="ybdH" /locus_tag="SF0514" /note="Code: C; COG: COG0371" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_706455.1" /db_xref="GeneID:1026052" /translation="MPHNPIRVVVGPANYFSHPGSFNHLHNFFTDEQLSRAVWIYGKR AIAAAQTKLPPAFGLPGAKHILFRGHCSESDVQQLAAESGDDRSVVIGVGGGALLDTA KALARRLGLPFVAAPTIAATCAAWTPLSVWYNDAGQALHYEIFDDANFMVLVEPEIIL NAPQQYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINNAQAIRDVLLNSSEQALA DQQNQQLTQSFCDVVDAIIAGGGMVGGLGDRFTRVAAAHAVHNGLTVLPQTEKFLHGT KVAYGILVQSALLGQDDVLAQLTGAYQRFHLPTTLAELEVDINNQAEIDKVIAHTLRP VESIHYLPVTLTPDTLRAAFEKVESFKA" misc_feature complement(535754..536839) /gene="ybdH" /locus_tag="SF0514" /note="putative oxidoreductase; Provisional; Region: PRK10586" /db_xref="CDD:182570" misc_feature complement(order(536018..536020,536057..536059, 536069..536071,536309..536311,536321..536323, 536342..536344,536366..536368,536417..536422, 536477..536479,536483..536488,536531..536533, 536540..536542,536549..536557,536714..536716)) /gene="ybdH" /locus_tag="SF0514" /note="putative active site [active]" /db_xref="CDD:341451" misc_feature complement(order(536018..536020,536366..536368, 536471..536473,536477..536479,536483..536488, 536549..536557,536714..536716)) /gene="ybdH" /locus_tag="SF0514" /note="putative NAD binding site [chemical binding]; other site" /db_xref="CDD:341451" misc_feature complement(order(536018..536020,536069..536071, 536321..536323)) /gene="ybdH" /locus_tag="SF0514" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:341451" gene 536948..538108 /gene="ybdL" /locus_tag="SF0515" /db_xref="GeneID:1023420" CDS 536948..538108 /gene="ybdL" /locus_tag="SF0515" /note="Code: E; COG: COG0436" /codon_start=1 /transl_table=11 /product="methionine aminotransferase" /protein_id="NP_706456.1" /db_xref="GeneID:1023420" /translation="MTNNPLIPQSKLPQLGTTIFTQMSALAQQHQAINLSQGFPDFDG PRYLQERLAYHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATE ALYAAITALVRNGDEVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALL SERTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASV LAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLA LADMLRAEPEHYLALPDFYRQKRDILVNALNESRLEILPCEGTYFLLVDYSAVSTLDD VEFCQWLTQEHGVAAIPLSVFCADPFPHKLIRLCFAKKESTLLAAAERLRQL" misc_feature 536948..538105 /gene="ybdL" /locus_tag="SF0515" /note="methionine aminotransferase; Validated; Region: PRK09082" /db_xref="CDD:181642" misc_feature complement(538109..539990) /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786817 (210 aa). BLAST with identity of 99% in 627 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element complement(538620..539868) /mobile_element_type="insertion sequence:IS911" gene complement(538628..539467) /locus_tag="SF0516" /db_xref="GeneID:1023432" CDS complement(538628..539467) /locus_tag="SF0516" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_706457.1" /db_xref="GeneID:1023432" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature complement(538637..539446) /locus_tag="SF0516" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(539494..539832) /locus_tag="SF0517" /db_xref="GeneID:1023451" CDS complement(539494..539832) /locus_tag="SF0517" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_706458.1" /db_xref="GeneID:1023451" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature complement(539524..539793) /locus_tag="SF0517" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" misc_feature complement(539963..542415) /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786818 (407 aa). BLAST with identity of 98% in 817 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." gene complement(539963..540940) /locus_tag="SF0517a" /pseudogene="unknown" /db_xref="GeneID:16608306" gene 541040..541324 /locus_tag="SF0519" /db_xref="GeneID:1023453" CDS 541040..541324 /locus_tag="SF0519" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706459.1" /db_xref="GeneID:1023453" /translation="MPMSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYAW IKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDILKKAAAYFAKLSD" misc_feature 541040..541306 /locus_tag="SF0519" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 541381..542193 /locus_tag="SF0520" /db_xref="GeneID:1023455" CDS 541381..542193 /locus_tag="SF0520" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706460.1" /db_xref="GeneID:1023455" /translation="MLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGY RKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNP DAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWR RNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRER IKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSEQMSPTEYENQYYQRLGSV" misc_feature <541384..542160 /locus_tag="SF0520" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(542562..543464) /locus_tag="SF0522" /db_xref="GeneID:1026058" CDS complement(542562..543464) /locus_tag="SF0522" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_706461.1" /db_xref="GeneID:1026058" /translation="MANLYDLKKFDLNLLVIFECIYQHLSISKAAESLYITPSAVSQS LQRLRAQFNDPLFIRSGKGIAPTTTGLNLHHHLEKNLKGLEQTINIVNKSELKKNFII YGPQLISCSNNSMLIRCLRQDASVEIECHDILMSAENAEELLVHRKADLVITQMPVIS RSVICMPLHTIRNTLICSNKHPRITDNSTYEQIMAEEFTQLIAKSAGVDDIQMEIDEK FMNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNYHRDFLNLKEIKLEHPLPSIKLY ISYNKSSLNNLVFSRFIDRLNESF" misc_feature complement(542565..543446) /locus_tag="SF0522" /note="DNA-binding transcriptional regulator; Region: PRK11482" /db_xref="CDD:183159" gene complement(543674..544480) /gene="dsbG" /locus_tag="SF0523" /db_xref="GeneID:1023465" CDS complement(543674..544480) /gene="dsbG" /locus_tag="SF0523" /note="Code: O; COG: COG1651" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein" /protein_id="NP_706462.3" /db_xref="GeneID:1023465" /translation="MTVIGYAFYSTFALTEKNKLMLKKILLLALLPAIAFAEELPSPV KAIEKQGITIIKTFDAPGGMKGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSN TLIEKEIYAPAGREMWQRMEQSHWLLDGKKDAPVIVYVFSDPFCPYCKQFWQQARPWV DSGKVQLRTLLVGVIKPESPATAAAILASKDPAKTWQQYEASGCKLKLNVPANVSTEQ MKVLSDNEKLMDDLGANVTPAIYYMSKENTLQQAVGLPDQKTLNIIMGNK" misc_feature complement(543677..544387) /gene="dsbG" /locus_tag="SF0523" /note="disulfide isomerase/thiol-disulfide oxidase; Provisional; Region: dsbG; PRK11657" /db_xref="CDD:183262" gene 544792..545355 /gene="ahpC" /locus_tag="SF0524" /db_xref="GeneID:1023440" CDS 544792..545355 /gene="ahpC" /locus_tag="SF0524" /note="Code: O; COG: COG0450" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase" /protein_id="NP_706463.1" /db_xref="GeneID:1023440" /translation="MSLINTKIKPFKNQAFKNGEFIEITEKDTEGRWSVFFFYPADFT FVCPTELGDVADHYEELQKLGVDVYAVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAS HPGEVCPAKWKEGEATLAPSLDLVGKI" misc_feature 544792..545352 /gene="ahpC" /locus_tag="SF0524" /note="alkyl hydroperoxide reductase subunit C; Provisional; Region: PRK10382" /db_xref="CDD:182423" gene 545570..547165 /gene="ahpF" /locus_tag="SF0525" /db_xref="GeneID:1023431" CDS 545570..547165 /gene="ahpF" /locus_tag="SF0525" /note="Code: O; COG: COG3634" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase" /protein_id="NP_706464.1" /db_xref="GeneID:1023431" /translation="MMMFKAQEINMLDTNMKTQLKAYLEKLTKPVELIATLDDSAKSA EIKELLAEIAELSDKVTFKEDNSLPVRKPSFLITNPGSNQGPRFAGSPLGHEFTSLVL ALLWTGGHPSKEAQSLLEQIRHIDGDFEFETYYSLSCHNCPDVVQALNLMSVLNPRIK HTAIDGGTFQNEITDRNVMGVPAVFVNGKEFGQGRMTLTEIVAKIDTGAENRAAEELN KRDAYDVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEG QKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGA KWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVT LLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGNIHNI ELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQII IATGEGAKASLSAFDYLIRTKTA" misc_feature 545600..547162 /gene="ahpF" /locus_tag="SF0525" /note="alkyl hydroperoxide reductase subunit F; Provisional; Region: PRK15317" /db_xref="CDD:237942" gene complement(547286..547714) /gene="ybdQ" /locus_tag="SF0526" /db_xref="GeneID:1023423" CDS complement(547286..547714) /gene="ybdQ" /locus_tag="SF0526" /note="Code: T; COG: COG0589" /codon_start=1 /transl_table=11 /product="universal stress protein UspG" /protein_id="NP_706465.1" /db_xref="GeneID:1023423" /translation="MYKAIIMPVDVFEMELSDKAVRHAEFLAQDDGVIHLLHVLPGSA SLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFTIDPSRIKQHVRFGSVRDEVNELAE ELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR" misc_feature complement(547289..547714) /gene="ybdQ" /locus_tag="SF0526" /note="universal stress protein UspG; Provisional; Region: PRK15456" /db_xref="CDD:185353" gene 547935..549173 /gene="ybdR" /locus_tag="SF0527" /db_xref="GeneID:1023430" CDS 547935..549173 /gene="ybdR" /locus_tag="SF0527" /note="Code: ER; COG: COG1063" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_706466.1" /db_xref="GeneID:1023430" /translation="MKALTYHGPHHVQVENVPDPGIEQADDIILRITVTAICGSDLHL YRGKIPQVKHGDIFGHEFMGEVVETGKDVKNLQKGDRVVIPFVIACGDCFFCRLQQYA ACENTNAGKGAALNKKQIPAPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLL SDDKALFLSDILPTAWQAAKNVQIQQGSSVAVYGAGPVGLLTIACARLLGAEQIFVVD HHPYRLRFAADRYGAIPINFDEDSDPAQSIIEQTAGHRGVDAVIDAVGFEAKGSTTET VLTNLKLEGSSGKALRQCIAAVRRGGIVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQT HVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGAQS AEAAQKAVSGLVNAMPGGTI" misc_feature 547935..549098 /gene="ybdR" /locus_tag="SF0527" /note="Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1; Region: FDH_like_1; cd08283" /db_xref="CDD:176243" misc_feature order(548046..548054,548061..548063,548190..548192, 548442..548444,548454..548456,548511..548516, 548520..548528,548583..548591,548601..548603, 548646..548648,548724..548732,548802..548804, 548853..548861,548928..548936,549054..549056) /gene="ybdR" /locus_tag="SF0527" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:176243" misc_feature order(548046..548048,548052..548054,548112..548114, 548442..548444) /gene="ybdR" /locus_tag="SF0527" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176243" misc_feature order(548202..548207,548211..548213,548220..548222, 548244..548246) /gene="ybdR" /locus_tag="SF0527" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176243" gene complement(549404..549814) /gene="rnk" /locus_tag="SF0528" /db_xref="GeneID:1023415" CDS complement(549404..549814) /gene="rnk" /locus_tag="SF0528" /note="Code: K; COG: COG0782" /codon_start=1 /transl_table=11 /product="nucleoside diphosphate kinase regulator" /protein_id="NP_706467.1" /db_xref="GeneID:1023415" /translation="MSRPTIIINDLDAERIDILLEQPAYAGLPIADALNAELDRAQMC SPEEMPHDVVTMNSRVKFRNLSDGEVRVRTLVYPAKMTDSNTQLSVMAPVGAALLGLR VGDSIHWELPGGVATHLEVLELEYQPEAAGDYLL" misc_feature complement(549407..549814) /gene="rnk" /locus_tag="SF0528" /note="nucleoside diphosphate kinase regulator; Provisional; Region: PRK05753" /db_xref="CDD:180236" gene complement(550043..550867) /gene="rna" /locus_tag="SF0529" /db_xref="GeneID:1023476" CDS complement(550043..550867) /gene="rna" /locus_tag="SF0529" /codon_start=1 /transl_table=11 /product="ribonuclease I" /protein_id="NP_706468.1" /db_xref="GeneID:1023476" /translation="MSSTPIMKAFCRNAALLAVSLLPLSSANAVALQAKQYGDFDRYV LALSWQTGFCQSQHDRNRNERDECRLQTETTNKTDFLTVHGLWPGLPKSVAARGVDER RWMRFGCATRPIPNLPEARASRMCSSPETGLSLETAAKLSEVMPGAGGRSCLERYEYA KHGACFGFDPDAYFGTMVRLNQEIKESEAGKFLADNYGKTVSRRDFDAAFAKSWGKEN VKAVKLTCQGNPAYLTEIQISIKADAINAPLSANSFLPQPHPGNCGKTFVIDKAGY" misc_feature complement(550046..550849) /gene="rna" /locus_tag="SF0529" /note="ribonuclease I; Provisional; Region: PRK10095" /db_xref="CDD:236650" misc_feature complement(order(550157..550159,550607..550609, 550736..550738)) /gene="rna" /locus_tag="SF0529" /note="B1 nucleotide binding pocket [chemical binding]; other site" /db_xref="CDD:238513" misc_feature complement(order(550163..550165,550406..550408, 550709..550711,550724..550726)) /gene="rna" /locus_tag="SF0529" /note="B2 nucleotide binding pocket [chemical binding]; other site" /db_xref="CDD:238513" misc_feature complement(order(550373..550408,550604..550627)) /gene="rna" /locus_tag="SF0529" /note="CAS motifs [active]" /db_xref="CDD:238513" misc_feature complement(order(550382..550387,550394..550399, 550601..550603,550607..550609,550616..550618)) /gene="rna" /locus_tag="SF0529" /note="active site" /db_xref="CDD:238513" gene complement(550963..552425) /gene="ybdS" /locus_tag="SF0530" /pseudo /db_xref="GeneID:1023426" misc_feature complement(550963..552425) /gene="ybdS" /locus_tag="SF0530" /note="Similar to Escherichia coli K12 a membrane protein gi: 1786829 (488 aa). BLAST with identity of 99% in 487 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(552476..553354) /locus_tag="SF0531a" /db_xref="GeneID:16608307" CDS complement(552476..553354) /locus_tag="SF0531a" /codon_start=1 /transl_table=11 /product="2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase" /protein_id="YP_008439231.1" /db_xref="GeneID:16608307" /translation="MSMPATSTKTTKLATSLIDEYALLGWRAMLTEVNLSPKPGLVDR INCGAHKDMALEDFHRSALAIQGWLPRFIEFGACSAEMAPEAVLHGLRPIGMACEGDM FRATAGVNTHKGSIFSLGLLCAAIGRLLQLNQPVTPTTVCSTAASFCRGLTDRELRTN NSRLTAGQRLYQQLGLTGARGEAEAGYPLVINHALPHYLTLLDQGLDPELALLDTLLL LMATNGDTNVASRGGEGGLRWLQREAQTLLQKGGIRTPTDLDYLRQFDRECIERNLSP GGSADLLILTCFLAQI" misc_feature complement(552479..553354) /locus_tag="SF0531a" /note="triphosphoribosyl-dephospho-CoA synthase; Provisional; Region: citG; PRK10096" /db_xref="CDD:182239" gene complement(553329..553879) /gene="ybdU" /locus_tag="SF0531" /pseudo /db_xref="GeneID:1023427" misc_feature complement(553329..553879) /gene="ybdU" /locus_tag="SF0531" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786831 (184 aa). BLAST with identity of 98% in 183 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(553883..555415) /gene="citF" /locus_tag="SF0532" /db_xref="GeneID:1023421" CDS complement(553883..555415) /gene="citF" /locus_tag="SF0532" /note="Code: C; COG: COG3051" /codon_start=1 /transl_table=11 /product="citrate lyase subunit alpha" /protein_id="NP_706469.1" /db_xref="GeneID:1023421" /translation="MTQKIEQSQRQERVAAWNRRTECDLAAFQNSPKQTYQAEKARDR KLCANLEEAIRRSGLQDGMTVSFHHAFRGGDLTVNMVMDVIAKMGFKNLTLASSSLSD CHAPLVEHIRQGVVTRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNI DVAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADNAKQVVMLTEELLPYPHNPASI EQDQVDLIVKVNRVGDAAKIGAGTTRMTTNPRELLIARSAADVIVNSGYFKEGFSMQT GTGGASLAVTRFLEDKMRSRDIRADFALGGITATMVDLHEKGLIRKLLDVQSFDSHAA QSLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEIDRQFNVNVLTGSDGVLRG ASGGHCDTAIASALSIIVAPLVRGRIPTLVDNVLTCITPGSSVDILVTDHGIAVNPAR PELAERLQEAGIKVVSIEWLRERARLLTGEPQPIEFTDRVVAVVRYRDGSVIDVVHQV KE" misc_feature complement(553886..555337) /gene="citF" /locus_tag="SF0532" /note="Citrate lyase, alpha subunit [Energy production and conversion]; Region: CitF; COG3051" /db_xref="CDD:442285" gene complement(555426..556334) /gene="citE" /locus_tag="SF0533" /db_xref="GeneID:1023466" CDS complement(555426..556334) /gene="citE" /locus_tag="SF0533" /note="Code: G; COG: COG2301" /codon_start=1 /transl_table=11 /product="citrate lyase subunit beta" /protein_id="NP_706470.2" /db_xref="GeneID:1023466" /translation="MISASLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLE DSVALREKDTARRMVYHALQHPLYRDIETIVRVNALDSEWGVNDLEAVVRGGADVVRL PKTDTAQDVLDIEKEILRIEKACGREPGSTGLLAAIESPLGITRAVEIAHASERLIGI ALGAEDYVRNLRTERSPEGTELLFARCSILQAARSAGIQAFDTVYSDANNEAGFLQEA AHIKQLGFDGKSLINPRQIDLLHNLYAPTQKEVDHAHRVVEAAEAAAREGLGVVSLNG KMVDGPVIDRARLVLSRAELSGIREE" misc_feature complement(555438..556301) /gene="citE" /locus_tag="SF0533" /note="Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their...; Region: malate_synt; cl21481" /db_xref="CDD:451263" gene complement(556331..556627) /gene="citD" /locus_tag="SF0534" /db_xref="GeneID:1023433" CDS complement(556331..556627) /gene="citD" /locus_tag="SF0534" /note="Code: C; COG: COG3052" /codon_start=1 /transl_table=11 /product="citrate lyase subunit gamma" /protein_id="NP_706471.2" /db_xref="GeneID:1023433" /translation="MKINQPAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGDA IRTTILDVLARYNVRGVQLNVDDKGALDCILHARLEALLARASGIPALPWEDCQ" misc_feature complement(556352..556627) /gene="citD" /locus_tag="SF0534" /note="citrate lyase subunit gamma; Provisional; Region: PRK13253" /db_xref="CDD:237316" gene complement(556642..557787) /gene="citC" /locus_tag="SF0535" /db_xref="GeneID:1023474" CDS complement(556642..557787) /gene="citC" /locus_tag="SF0535" /note="Code: C; COG: COG3053" /codon_start=1 /transl_table=11 /product="[citrate (pro-3S)-lyase] ligase" /protein_id="NP_706472.2" /db_xref="GeneID:1023474" /translation="MKIKGYQFATLNNIRCKSITTCTFRILFIMFGNDIFTRVKRSEN KKMAEIAQFLHENDLSVDTTVEVFITVTRDEKLIACGGIAGNIIKCVAISESVRGEGL ALTLATELINLAYERHSTHLFIYTKTEYEALFRQCGFSTLTCVPGVMVLMENSATRLK RYAESLKKFRHPGNKIGCIVMNANPFTNGHRYLIQQAAAQCDWLHLFLVKEDSSRFPY EDRLDLVLKGTADIPRLTVHRGSEYIISRATFPCYFIKEQSVINHCYTEIDLKIFRQY LAPALGVTHRFVGTEPFCRVTAQYNQDMRYWLETPTISAAPIELVEIERLRYQEMPIS ASRVRQLLAKNDLTAIAPLVPAVTLHYLQNLLEHSRQDAAARQKTPA" misc_feature complement(556684..557682) /gene="citC" /locus_tag="SF0535" /note="[citrate (pro-3S)-lyase] ligase; Region: cit_ly_ligase; TIGR00124" /db_xref="CDD:129230" misc_feature complement(order(556771..556773,556780..556791, 556915..556917,556921..556926,557158..557163, 557218..557220,557227..557229,557239..557253)) /gene="citC" /locus_tag="SF0535" /note="putative active site [active]" /db_xref="CDD:173920" misc_feature complement(557218..557229) /gene="citC" /locus_tag="SF0535" /note="(T/H)XGH motif; other site" /db_xref="CDD:173920" mobile_element complement(558151..558918) /mobile_element_type="insertion sequence:IS1" gene complement(558166..558669) /gene="insB" /locus_tag="SF0536" /db_xref="GeneID:1023477" CDS complement(558166..558669) /gene="insB" /locus_tag="SF0536" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706473.1" /db_xref="GeneID:1023477" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARPVRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature complement(558169..558561) /gene="insB" /locus_tag="SF0536" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 559732..560550 /gene="ybhA" /locus_tag="SF0538" /db_xref="GeneID:1023470" CDS 559732..560550 /gene="ybhA" /locus_tag="SF0538" /note="Code: R; COG: COG0561" /codon_start=1 /transl_table=11 /product="pyridoxal phosphate (PLP) phosphatase" /protein_id="NP_706475.2" /db_xref="GeneID:1023470" /translation="MTTRVIALDLDGTLLTPKKTLLPSSIEALARAREAGYQLIIVTG RHHVAIHPFYQALALDTPAICCNGTYLYDYHAKTVLEADPMPVNKALQLIEMLNEHHI HGLMYVDDAMVYEHPTGHVIRTSNWAQTLPPEQRPTFTQVASLAETTQQVNAVWKFAL THDDLPQLQHFGKHVEHELGLECEWSWHDQVDIAHGGNSKGKRLTKWVEAQGWSMENV VAFGDNFNDISMLEAAGTGVAMGNADDAVKARANIVIGDNTTDSIAQFIYSHLI" misc_feature 559732..560547 /gene="ybhA" /locus_tag="SF0538" /note="pyridoxal phosphate (PLP) phosphatase; Provisional; Region: PRK10530" /db_xref="CDD:182523" gene complement(560551..561609) /gene="modC" /locus_tag="SF0539" /db_xref="GeneID:1023472" CDS complement(560551..561609) /gene="modC" /locus_tag="SF0539" /note="Code: P; COG: COG1118" /codon_start=1 /transl_table=11 /product="molybdate transporter ATP-binding protein" /protein_id="NP_706476.1" /db_xref="GeneID:1023472" /translation="MLELNFSQTLGNHCLTINETLPANGITAIFGVSGAGKTSLINAI SGLTRPQKGRIVLNGRVLNDAEKGICLTPEKRRVGYVFQDARLFPHYKVRGNLRYGMS KSMVDQFDKLVALLGIEPLLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD IPRKRELLPYLQRLTREINIPMLYVSHSLDEILHLADRVMVLENGQVKAFGALEEVWG SSVMNPWLPKEQQSSILKVTVLEHHPHYAMTALALGDQHLWVNKLGEPLQAALRIRIQ ASDVSLVLQPPQQTSIRNVLRAKVVNSYDDNGQVEVELEVGGKTLWARISPWARDELA IKPGLWLYAQIKSVSITA" misc_feature complement(560554..561609) /gene="modC" /locus_tag="SF0539" /note="molybdenum ABC transporter ATP-binding protein ModC; Region: modC; PRK11144" /db_xref="CDD:182993" gene complement(561612..562301) /gene="modB" /locus_tag="SF0540" /db_xref="GeneID:1023484" CDS complement(561612..562301) /gene="modB" /locus_tag="SF0540" /note="Code: P; COG: COG0555" /codon_start=1 /transl_table=11 /product="molybdate ABC transporter permease" /protein_id="NP_706477.1" /db_xref="GeneID:1023484" /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCTFPGK ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGERLYDWFGITFAFSWRGAVLAAAVM SFPLMVRAIRLALEGVDVKLEQAARTLGAGRWRVFFTITLPLTLPGIIVGTVLAFARS LGEFGATITFVSNIPSETRTIPSAMYTLIQTPGGESGAARLCIISIALAMISLLISEW LARISRERAGR" misc_feature complement(561618..562301) /gene="modB" /locus_tag="SF0540" /note="molybdate ABC transporter permease subunit; Region: modB; PRK09421" /db_xref="CDD:181841" misc_feature complement(order(561753..561758,561795..561800, 561807..561818,561837..561839,561846..561851, 561891..561893,561942..561944,561951..561956, 561966..561968,561972..561977,561984..561986, 561990..561992,561996..562001,562101..562103, 562107..562112,562119..562148,562152..562163, 562191..562193,562206..562211,562218..562223)) /gene="modB" /locus_tag="SF0540" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(561801..561818,562101..562145)) /gene="modB" /locus_tag="SF0540" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(561753..561755,561762..561764, 561798..561800,562014..562016,562101..562103)) /gene="modB" /locus_tag="SF0540" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(561870..561872,561882..561887, 561903..561941)) /gene="modB" /locus_tag="SF0540" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(562301..563074) /gene="modA" /locus_tag="SF0541" /db_xref="GeneID:1025459" CDS complement(562301..563074) /gene="modA" /locus_tag="SF0541" /note="Code: P; COG: COG0725" /codon_start=1 /transl_table=11 /product="molybdate transporter substrate-binding protein" /protein_id="NP_706478.1" /db_xref="GeneID:1025459" /translation="MARKWLNLFAGAALSFAVAGNALADEGKITVFAAASLTNAMQDI ATQYKKEKGVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQ TLLGNSLVVVAPKASEQKDFTIDSKTNWTSLLNGGRLAVGDPEHVPAGIYAKEALQKL GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYGSDAVASKGVKVVATFPEDSHKKV EYPVAVVEGHNNATVKAFYDYLKGPQAAEIFKRYGFTTK" misc_feature complement(562304..563074) /gene="modA" /locus_tag="SF0541" /note="molybdate transporter periplasmic protein; Provisional; Region: modA; PRK10677" /db_xref="CDD:182641" misc_feature complement(order(562493..562495,562547..562552, 562628..562633,562829..562831,562886..562888, 562970..562975)) /gene="modA" /locus_tag="SF0541" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270254" gene complement(563241..563390) /locus_tag="SF0542" /db_xref="GeneID:1023485" CDS complement(563241..563390) /locus_tag="SF0542" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706479.2" /db_xref="GeneID:1023485" /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGVGKKDQ PGQNH" misc_feature complement(563247..563390) /locus_tag="SF0542" /note="Multidrug efflux pump-associated protein AcrZ; Region: AcrZ; pfam10766" /db_xref="CDD:431482" gene 563519..564307 /gene="modE" /locus_tag="SF0543" /db_xref="GeneID:1023462" CDS 563519..564307 /gene="modE" /locus_tag="SF0543" /note="Code: R; COG: COG2005" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator ModE" /protein_id="NP_706480.1" /db_xref="GeneID:1023462" /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS YKSAWDAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLYDLLAQIQQKAFDV LSDDDALPLNSLLAAISRFSLQTSARNQWFGTITARDHDDVQQHVDVLLADGKTRLKV AITAQSGARLGLDEGKEVLILLKAPWVGITQDEAVAQNADNQLPGIISHIERGAEQCE VLMALPDGQTLCATVPVNEATSLQQGQNVTAYFNADSVIIATLC" misc_feature 563519..564304 /gene="modE" /locus_tag="SF0543" /note="DNA-binding transcriptional regulator ModE; Provisional; Region: PRK10676" /db_xref="CDD:182640" gene 564375..565847 /gene="modF" /locus_tag="SF0544" /db_xref="GeneID:1023487" CDS 564375..565847 /gene="modF" /locus_tag="SF0544" /note="Code: P; COG: COG1119" /codon_start=1 /transl_table=11 /product="molybdenum transport ATP-binding protein ModF" /protein_id="NP_706481.1" /db_xref="GeneID:1023487" /translation="MSSLQILQGTFRLSDTKTLQLPQLTLNAGDSWAFVGSNGSGKSA LARALAGELPLLKGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLGPSEDYTGRTT AEIIQDEVKDAPRCMQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILD EPFDGLDVASRQQLAERLASLHQSGITLVLVLNRFDKIPEFVQFAGVLADCTLAETGA KEELLQQALVAQLAHSEQLEGVQLPEPDEPSARHALPANESRIVLNNGVVSYNDRPIL NNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSSETIWDI KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQVVSDRQQKLVQQWLDILGIDK HTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLIRRFVDVLISE GETQLLFVSHHAEDAPACITHRLEFVPDGGLYRYVLTKIY" misc_feature 564375..565841 /gene="modF" /locus_tag="SF0544" /note="putative molybdenum transport ATP-binding protein ModF; Provisional; Region: PRK10938" /db_xref="CDD:182852" gene 566108..567124 /gene="galE" /locus_tag="SF0545" /db_xref="GeneID:1023480" CDS 566108..567124 /gene="galE" /locus_tag="SF0545" /note="Code: M; COG: COG1087" /codon_start=1 /transl_table=11 /product="UDP-galactose-4-epimerase" /protein_id="NP_706482.2" /db_xref="GeneID:1023480" /translation="MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVAESVQKPLEYYDNNVN GTLRLISAMRAANVKNFIFSSSATVYGDQPQIPYVESFPTGTPQSPYGKSKLMVEQIL TDLQKAQPDWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRDSLAIF GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGSSVLDVVNAF SKACGKPVNYHFAPRREGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ GYPD" misc_feature 566108..567121 /gene="galE" /locus_tag="SF0545" /note="UDP-galactose-4-epimerase; Provisional; Region: PRK10675" /db_xref="CDD:182639" misc_feature order(566126..566128,566132..566143,566198..566215, 566276..566284,566345..566353,566357..566359, 566402..566404,566471..566479,566552..566554, 566564..566566,566636..566641,566645..566647) /gene="galE" /locus_tag="SF0545" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187558" misc_feature order(566375..566377,566381..566389,566396..566401, 566408..566413,566420..566425,566429..566434, 566441..566443,566549..566551,566558..566560, 566570..566572,566579..566584,566588..566596) /gene="galE" /locus_tag="SF0545" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187558" misc_feature order(566405..566407,566477..566479,566552..566554, 566564..566566) /gene="galE" /locus_tag="SF0545" /note="active site" /db_xref="CDD:187558" misc_feature order(566477..566485,566552..566554,566636..566644, 566699..566707,566750..566761,566792..566794, 566798..566800,566804..566806,566912..566914, 566981..566983,566990..566992) /gene="galE" /locus_tag="SF0545" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187558" gene 567134..568180 /gene="galT" /locus_tag="SF0546" /db_xref="GeneID:1023446" CDS 567134..568180 /gene="galT" /locus_tag="SF0546" /note="Code: C; COG: COG1085" /codon_start=1 /transl_table=11 /product="galactose-1-phosphate uridylyltransferase" /protein_id="NP_706483.1" /db_xref="GeneID:1023446" /translation="MTQFNPVDHPHRRYNPLTGQWILVSPHRAKRPWQGAQETPAKQV LPAHDPDCFLCAGNVRVTGDKNPDYTGTYVFTNDFAALMSDTPDAPESNDPLMRCQSA RGTSRVICFSPDHSKTLPELSVAALTEIVKTWQEQTAELGKTYPWVQVFENKGAAMGC SNPHPHGQIWANSFLPNEAECEDRLQKEYFAEQKSPMLVDYVQRELADGSRTVVETEH WLAVVPYWAAWPFETLLLPKAHVLRITDLTDAQRSDLALALKKLTSRYDNLFQCSFPY SMGWHGAPFNGEENQHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER LRAVSDIHFRESGV" misc_feature 567134..568171 /gene="galT" /locus_tag="SF0546" /note="UDP-glucose--hexose-1-phosphate uridylyltransferase; Region: PRK11720" /db_xref="CDD:236963" gene 568184..569332 /gene="galK" /locus_tag="SF0547" /db_xref="GeneID:1023445" CDS 568184..569332 /gene="galK" /locus_tag="SF0547" /note="Code: G; COG: COG0153" /codon_start=1 /transl_table=11 /product="galactokinase" /protein_id="NP_706484.1" /db_xref="GeneID:1023445" /translation="MSLKEKTQSLFANAFGYPATHTIQAPGRVNLIGEHTDYNDGFVL PCAIDYQTVISCAPRDDRKVRVMAADYENQLDEFSLNAPIVAHENYQWANYVRGVVKH LQLRNNSFGGVDMVISGNVPQGAGLSSSASLEVAVGTVLQQLYHLPLDGAQIALNGQE AENQFVGCNCGIMDQLISALGKKDHALLIDCRSLGTKAVSMPKGVAVVIINSNFKRTL VGSEYNTRREQCETGARFFQQPALRDVTIEEFNAVAHELDPIVAKRVRHILTENARTV EAASALEQGDLKRMGELMAESHASMRDDFEITVPQIDTLVEIVKAVIGDKGGVRMTGG GFGGCIVALIPEELVPAVQQAVAEQYEAKTGIKETFYVCKPSQGAGQC" misc_feature 568184..569329 /gene="galK" /locus_tag="SF0547" /note="galactokinase; Provisional; Region: PRK05101" /db_xref="CDD:179937" gene 569326..570366 /gene="galM" /locus_tag="SF0548" /db_xref="GeneID:1023468" CDS 569326..570366 /gene="galM" /locus_tag="SF0548" /note="Code: G; COG: COG2017" /codon_start=1 /transl_table=11 /product="galactose-1-epimerase" /protein_id="NP_706485.1" /db_xref="GeneID:1023468" /translation="MLNETPALAPDGQPYRLLTLRNNAGMVVTLMDWGATLLSARIPL SDGSVREALLGCASPECYQDQAAFLGASIGRYANRIANSRYTFDGETVTLSPSQGVNQ LHGGPEGFDKRRWQIVNQNDRQVLFALSSDDGDQGFPGNLGATVQYRLTDDNRISITY RATVDKPCPVNMTNHVYFNLDGEQSDVRNHKLQILADEYLPVDEGGIPHDGLKSVAGT SFDFRSAKIIASEFLADDDQRKVKGYDHAFLLQAKGDGKKVAAHVWSADEKLQLKVYT TAPALQFYSGNFLGGTPSRGTEPYADWQGLALESEFLPDSPNHPEWPQPDCFLRPGEE YSSLTEYQFIAE" misc_feature 569344..570360 /gene="galM" /locus_tag="SF0548" /note="galactose-1-epimerase; Provisional; Region: galM; PRK11055" /db_xref="CDD:182931" misc_feature order(569527..569529,569560..569562,569635..569637, 569848..569850,569854..569856,570058..570060, 570175..570177,570250..570252) /gene="galM" /locus_tag="SF0548" /note="active site" /db_xref="CDD:185696" misc_feature order(569848..569850,570250..570252) /gene="galM" /locus_tag="SF0548" /note="catalytic residues [active]" /db_xref="CDD:185696" gene 570569..571321 /gene="gpmA" /locus_tag="SF0549" /db_xref="GeneID:1023473" CDS 570569..571321 /gene="gpmA" /locus_tag="SF0549" /note="Code: G; COG: COG0588" /codon_start=1 /transl_table=11 /product="2,3-bisphosphoglycerate-dependent phosphoglycerate mutase" /protein_id="NP_706486.2" /db_xref="GeneID:1023473" /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL LKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR VIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEF DENFKPLKRYYLGNADEIAAKAAAVANQGKAK" misc_feature 570578..571318 /gene="gpmA" /locus_tag="SF0549" /note="2,3-diphosphoglycerate-dependent phosphoglycerate mutase; Region: gpmA; PRK14115" /db_xref="CDD:184516" misc_feature order(570596..570601,570752..570754,571118..571123) /gene="gpmA" /locus_tag="SF0549" /note="catalytic core [active]" /db_xref="CDD:132718" gene complement(571488..572540) /gene="aroG" /locus_tag="SF0550" /db_xref="GeneID:1023478" CDS complement(571488..572540) /gene="aroG" /locus_tag="SF0550" /note="Code: E; COG: COG0722" /codon_start=1 /transl_table=11 /product="3-deoxy-7-phosphoheptulonate synthase" /protein_id="NP_706487.1" /db_xref="GeneID:1023478" /translation="MNYQNDDLRIKEIKELLPPVALLEKFPATENAANTVAHARKAIH KILKGNDDRLLVVIGPCSIHDPVAAKEYATRLLALREELKDELEIVMRVYFEKPRTTV GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS AIVNTSGNGDCHIILRGGKEPNYSAKHVAEVKEGLNKAGLPAQVMIDFSHANSSKQFK KQMDVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLDSGEPLAYGKSITDACIGWEDT DALLRQLVNAVKARRG" misc_feature complement(571491..572540) /gene="aroG" /locus_tag="SF0550" /note="3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]; Region: AroG1; COG0722" /db_xref="CDD:440486" gene 572856..573236 /locus_tag="SF0551" /db_xref="GeneID:1027543" CDS 572856..573236 /locus_tag="SF0551" /codon_start=1 /transl_table=11 /product="homeobox protein" /protein_id="NP_706488.1" /db_xref="GeneID:1027543" /translation="MKMTKLATLFLTATLSLASGAALAADSGAQTNNGQANAAADAGQ VAPDARENVAPNNVDNNGVNTGSGGTMLHSDGSSMNNDGMTKDEEHKNTMCKDGRCPD INKKVQTGDGINNDVDTKTDGTTQ" misc_feature 572862..573233 /locus_tag="SF0551" /note="YbgS-like protein; Region: YbgS; pfam13985" /db_xref="CDD:464062" gene 573350..574291 /gene="ybgR" /locus_tag="SF0552" /db_xref="GeneID:1023518" CDS 573350..574291 /gene="ybgR" /locus_tag="SF0552" /note="Code: P; COG: COG1230" /codon_start=1 /transl_table=11 /product="zinc transporter ZitB" /protein_id="NP_706489.1" /db_xref="GeneID:1023518" /translation="MAHSHSHTSSHLPEDNNARRLLYAFGVTAGFMLVEVVGGFLSGS LALLADAGHMLTDTAALLFALLAVQFSRRPPTIRHTFGWLRLTTLAAFVNAIALVVIT ILIVWEAIERFRTPRPVEGGMMMAIAVAGLLANILSFWLLHHGSEEKNLNVRAAALHV LGDLLGSVGAIIAALIIIWTGWTPADPILSILVSLLVLRSAWRLLKDSVNELLEGAPV SLDIAELKRRMCREIPEVRNVHHVHVWMVGEKPVMTLHVQVIPPHDHDALLDQIQHYL MDHYQIEHTTIQMEYQPCHRPDCHLNEGVSGHSHHHH" misc_feature 573350..574285 /gene="ybgR" /locus_tag="SF0552" /note="CDF family zinc transporter ZitB; Region: PRK03557" /db_xref="CDD:235130" gene complement(574288..575007) /gene="pnuC" /locus_tag="SF0553" /db_xref="GeneID:1023463" CDS complement(574288..575007) /gene="pnuC" /locus_tag="SF0553" /note="Code: H; COG: COG3201" /codon_start=1 /transl_table=11 /product="nicotinamide riboside transporter PnuC" /protein_id="NP_706490.1" /db_xref="GeneID:1023463" /translation="MDFFSVQNILVHIPIGAGGYDLSWIEAVGTIAGLLCIGLASLEK ISNYFFGLINVTLFGIIFFQIQLYASLLLQVFFFAANIYGWYAWSRQTSQNEAELKIR WLPLPKALSWLAVCVVSIGLMTVFINPVFAFLTRVAVMIMQALGLQVVMPELQPDAFP FWDSCMMVLSIVAMILMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYIILTFIA LNGSRMWINSARERGSRALSH" misc_feature complement(574291..575007) /gene="pnuC" /locus_tag="SF0553" /note="nicotinamide riboside transporter PnuC; Provisional; Region: PRK15397" /db_xref="CDD:185295" gene complement(575045..576088) /gene="nadA" /locus_tag="SF0554" /db_xref="GeneID:1023452" CDS complement(575045..576088) /gene="nadA" /locus_tag="SF0554" /note="Code: H; COG: COG0379" /codon_start=1 /transl_table=11 /product="quinolinate synthetase" /protein_id="NP_706491.1" /db_xref="GeneID:1023452" /translation="MSVMFDPDTAIYPFPPKPTPLSIDEKAYYREKIKRLLKERNAVM VAHYYTDPEIQQLAEETGGCISDSLEMARFGAKHPASTLLVAGVRFMGETAKILSPEK TILMPTLQVECSLDLGCPVEEFNAFYDAHPDRTVVVYANTSAAVKARADWVVTSSIAV ELIDHLDSLGEKIIWAPDKHLGRYVQKQTGGDILCWQGACIVHDEFKTQALTRLQEEY PDAAILVHPESPQAIVDMADAVGSTSQLIAAAKALPHQRLIVATDRGIFYKMQQAVPD KELLEAPTAGEGATCRSCAHCPWMAMNDLQAIAEALEQEGSNHEVHVDERLRERALVP LNRMLDFAATLRG" misc_feature complement(575060..576064) /gene="nadA" /locus_tag="SF0554" /note="quinolinate synthase NadA; Region: PRK09375" /db_xref="CDD:236489" gene complement(576337..576412) /locus_tag="SF4445" /db_xref="GeneID:3161789" tRNA complement(576337..576412) /locus_tag="SF4445" /product="tRNA-Lys" /codon_recognized="AAA" /db_xref="GeneID:3161789" gene complement(576416..576491) /locus_tag="SF4446" /db_xref="GeneID:3161788" tRNA complement(576416..576491) /locus_tag="SF4446" /product="tRNA-Val" /codon_recognized="GUA" /db_xref="GeneID:3161788" gene complement(576627..576702) /locus_tag="SF4447" /db_xref="GeneID:3161787" tRNA complement(576627..576702) /locus_tag="SF4447" /product="tRNA-Lys" /codon_recognized="AAA" /db_xref="GeneID:3161787" gene complement(576867..577658) /gene="ybgF" /locus_tag="SF0555" /db_xref="GeneID:1023495" CDS complement(576867..577658) /gene="ybgF" /locus_tag="SF0555" /note="Code: S; COG: COG1729" /codon_start=1 /transl_table=11 /product="tol-pal system protein YbgF" /protein_id="NP_706492.1" /db_xref="GeneID:1023495" /translation="MSSNFRHQLLSLSLLVGIAAHWAAFAQAPISSVSSGSVEDRVTQ LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQIDSLS SGGAAAQSTSSDQSGATASTTPTADAGTANAGAPVKSGDANTDYNAAIALVQDKSRQD DAMVAFQNFIKNYPDSTYLPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAAD AMFKVGVIMQDKGDTAKAKAVYQQVISKYPGTDGAKQAQKRLNAM" misc_feature complement(576870..577658) /gene="ybgF" /locus_tag="SF0555" /note="tol-pal system protein YbgF; Provisional; Region: PRK10803" /db_xref="CDD:182745" misc_feature complement(order(576972..576974,576981..576986, 576993..576998,577014..577016,577083..577088, 577092..577097,577104..577109,577116..577118, 577200..577202,577206..577211,577218..577223)) /gene="ybgF" /locus_tag="SF0555" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(577146..577223) /gene="ybgF" /locus_tag="SF0555" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(577032..577133) /gene="ybgF" /locus_tag="SF0555" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(576924..577019) /gene="ybgF" /locus_tag="SF0555" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene complement(577668..578189) /gene="pal" /locus_tag="SF0556" /db_xref="GeneID:1023464" CDS complement(577668..578189) /gene="pal" /locus_tag="SF0556" /note="Code: M; COG: COG2885" /codon_start=1 /transl_table=11 /product="peptidoglycan-associated outer membrane lipoprotein" /protein_id="NP_706493.2" /db_xref="GeneID:1023464" /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGMLGAGTGMD ANGGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAQMLDAHANFLRSNPSYK VTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDE AAYSKNRRAVLVY" misc_feature complement(577671..578189) /gene="pal" /locus_tag="SF0556" /note="peptidoglycan-associated lipoprotein Pal; Region: PRK10802" /db_xref="CDD:182744" gene complement(578224..579516) /gene="tolB" /locus_tag="SF0557" /db_xref="GeneID:1023467" CDS complement(578224..579516) /gene="tolB" /locus_tag="SF0557" /note="Code: N; COG: COG0823" /codon_start=1 /transl_table=11 /product="translocation protein TolB" /protein_id="NP_706494.2" /db_xref="GeneID:1023467" /translation="MKQALRVAFGFLILWASVLHAEVRIVIDSGVDSGRPIGVVPFQW AGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVVG QVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPHPLMSPAWSPDGSKLAYVT FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLA SGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDLAGRPQVYKVNINGGAPQRITWEGSQN QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYS SSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYL" misc_feature complement(578236..579480) /gene="tolB" /locus_tag="SF0557" /note="tol-pal system beta propeller repeat protein TolB; Region: propeller_TolB; TIGR02800" /db_xref="CDD:274305" gene complement(579649..580890) /gene="tolA" /locus_tag="SF0558" /db_xref="GeneID:1023516" CDS complement(579649..580890) /gene="tolA" /locus_tag="SF0558" /note="Code: M; COG: COG3064" /codon_start=1 /transl_table=11 /product="cell envelope integrity inner membrane protein TolA" /protein_id="NP_706495.1" /db_xref="GeneID:1023516" /translation="MSKATEQNDKLKRAIIISAVLHVILFAALIWSSFDENIEASAGG GGGSSIDAVMVDSGAVVEQYKRMQSQESSAKRSDEQRKMKEQQAAEELREKQAAEQER LKQLEKERLAAQEQKKQAEEAAKQAELKQKQAEVAAAKAAADAKAAEEAAKKAAADAK KKAEAEAAKAAAEAQKKAEVAAAALKKKAEAAEAAAAEARKKAATEAAEKAKAEAEKK AAAEKAAADKKAAAEKAAADKKAAEKAAADKAAADKKAAAEKAAADKKAAAAKAAAEK AAAAKAAAEADDIFGELSSGKNAPKTGGGAKGNNASPAGSGNTKNNGASGADINNYAG QIKSAIESKFYDASSYAGKTCTLRIKLAPDGMLLDIKPEGGDPALCQAALAAAKLAKI PKPPSQAVYEVFKNAPLDFKP" misc_feature complement(579652..580890) /gene="tolA" /locus_tag="SF0558" /note="cell envelope integrity inner membrane protein TolA; Provisional; Region: tolA; PRK09510" /db_xref="CDD:236545" gene complement(580955..581383) /gene="tolR" /locus_tag="SF0559" /db_xref="GeneID:1023523" CDS complement(580955..581383) /gene="tolR" /locus_tag="SF0559" /note="Code: N; COG: COG0848" /codon_start=1 /transl_table=11 /product="colicin uptake protein TolR" /protein_id="NP_706496.1" /db_xref="GeneID:1023523" /translation="MARARGRGRRDLKSEINIVPLLDVLLVLLLIFMATAPIITQSVE VDLPDATESQAVSSNDNPPVIVEVSGIGQYTVVVEKDRLERLPPEQVVAEVSSRFKAN PKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLMTQPI" misc_feature complement(580958..581353) /gene="tolR" /locus_tag="SF0559" /note="colicin uptake protein TolR; Provisional; Region: PRK11024" /db_xref="CDD:236824" gene complement(581387..582079) /gene="tolQ" /locus_tag="SF0560" /db_xref="GeneID:1023502" CDS complement(581387..582079) /gene="tolQ" /locus_tag="SF0560" /note="Code: N; COG: COG0811" /codon_start=1 /transl_table=11 /product="colicin uptake protein TolQ" /protein_id="NP_706497.1" /db_xref="GeneID:1023502" /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNA AAREAEAFEDKFWSGIELSRLYQESQGKRDNLTGSEQIFYSGFKEFVRLHRANSHAPE AVVEGASRAMRISMNRELENLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH RQAFTVSESNKG" misc_feature complement(581390..582070) /gene="tolQ" /locus_tag="SF0560" /note="Tol-Pal system protein TolQ; Region: PRK10801" /db_xref="CDD:182743" gene complement(582076..582480) /gene="ybgC" /locus_tag="SF0561" /db_xref="GeneID:1023534" CDS complement(582076..582480) /gene="ybgC" /locus_tag="SF0561" /note="Code: R; COG: COG0824" /codon_start=1 /transl_table=11 /product="acyl-CoA thioester hydrolase YbgC" /protein_id="NP_706498.1" /db_xref="GeneID:1023534" /translation="MNTTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH FSQQALMAERVAFVVRKMTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQRIVNAENT LLNEAEVLVVCVDPLKMKPRALPKSIVAEFKQ" misc_feature complement(582082..582471) /gene="ybgC" /locus_tag="SF0561" /note="acyl-CoA thioesterase YbgC; Provisional; Region: PRK10800" /db_xref="CDD:182742" misc_feature complement(order(582214..582225,582304..582306, 582310..582312,582382..582384)) /gene="ybgC" /locus_tag="SF0561" /note="active site" /db_xref="CDD:238329" gene complement(582630..582923) /gene="ybgE" /locus_tag="SF0562" /db_xref="GeneID:1023513" CDS complement(582630..582923) /gene="ybgE" /locus_tag="SF0562" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706499.1" /db_xref="GeneID:1023513" /translation="MSKIIATLYAVMDKRPLRALSFVMALLLAGCMFWDPSRFAAKTS ELEIWHGLLLMWAVCAGVIHGVGFRPQKVLWQGIFCPLLADIVLIVGLIFFFF" misc_feature complement(582633..582923) /gene="ybgE" /locus_tag="SF0562" /note="hypothetical protein; Provisional; Region: PRK10588" /db_xref="CDD:236721" gene complement(583051..584190) /gene="cydB" /locus_tag="SF0563" /db_xref="GeneID:1023499" CDS complement(583051..584190) /gene="cydB" /locus_tag="SF0563" /note="Code: C; COG: COG1294" /codon_start=1 /transl_table=11 /product="cytochrome d ubiquinol oxidase subunit 2" /protein_id="NP_706500.1" /db_xref="GeneID:1023499" /translation="MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDT ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV GFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGN FFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALA GVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLL LLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ LTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY" misc_feature complement(583054..584190) /gene="cydB" /locus_tag="SF0563" /note="cytochrome d ubiquinol oxidase subunit II; Region: PRK15003" /db_xref="CDD:184965" gene complement(584206..585777) /gene="cydA" /locus_tag="SF0564" /db_xref="GeneID:1023517" CDS complement(584206..585777) /gene="cydA" /locus_tag="SF0564" /note="Code: C; COG: COG1271" /codon_start=1 /transl_table=11 /product="cytochrome d terminal oxidase subunit 1" /protein_id="NP_706501.1" /db_xref="GeneID:1023517" /translation="MMLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLS GKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGL MAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDF NFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAK RSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIP DQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRS GSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFR IMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQ PWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTG RYHFEQSSTTTQPAR" misc_feature complement(584209..585774) /gene="cydA" /locus_tag="SF0564" /note="cytochrome bd-I ubiquinol oxidase subunit CydA; Region: PRK15097" /db_xref="CDD:185052" gene complement(586371..586598) /locus_tag="SF0564a" /db_xref="GeneID:16608308" CDS complement(586371..586598) /locus_tag="SF0564a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439232.1" /db_xref="GeneID:16608308" /translation="MRGQIVDKGRFVHAGYGMNALFGLQKQANSIYCRDDVDTGKRSA SGNFVFIFTLKLRICGFIFNKIITTGELIII" gene complement(586623..589256) /gene="ybgG" /locus_tag="SF0565" /db_xref="GeneID:1023509" CDS complement(586623..589256) /gene="ybgG" /locus_tag="SF0565" /note="Code: G; COG: COG0383" /codon_start=1 /transl_table=11 /product="alpha-mannosidase" /protein_id="NP_706502.1" /db_xref="GeneID:1023509" /translation="MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQD NEYKYYVLDGQTAILEDYFAVKPENKDRLKKLVEAGKLIIGPWYTQTDTTIVSAESIV RNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITCTMFWRGCSERHGTDK TEFLWQSSDGSEVTAQVMPLGYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLP NGHDQMPLQQNIFEVMEKLREIYPQRKFVMSRFEEVFEKIEAQRDNLATLKGEFIDGK YMRVHRTIGSTRMDIKVAHARIENKIVNLLEPLATLARTLGFGYHHGLLEKMWKEILK NHAHDSIGCCCRDKVHREIVARFELAEDMADNLLRFYMRKIADNMPQSDADKLVLFNL MPWPREEVINTTVRLRASQFNLRDDRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPF MEFDIQINQIVPSMGYRTLYIEANQPGNVIAAKSDAEGILENAFWQIALNEDGTLQLV DKDSGVRYDRVLQIEESSDDGDEYDYSPAKEEWVITSANAKPQCEIIHEAWQSRAVIR YEMAVPRNLQQRSARQSTGRVDVELVVTLSHNNRRIDVDINLDNQADDHRLRVLIPTS FNTDSVLADTQFGSLTRPVNDSAMNNWQQESWKEAPVPVWNMLNYAALQEGRNGMAVF SEGLREFEVIGEEKKTFAITLLRGVGLLGKEDLLLRPRRPSGIKMPVPDSQLRGLLSC RLSLLSYTGTPTAAGVAQQARAWLTPVQCYNKIPWDAMKLNKAGFNVPESYSLLKMPP VGCLISALKKAEDRQEVILRLFNPAESATCDATVAFSREVISCSETMMDEHITTEENQ GSNLSGPFLPGQSRTFSYRLA" misc_feature complement(586632..589253) /gene="ybgG" /locus_tag="SF0565" /note="mannosylglycerate hydrolase; Region: PRK09819" /db_xref="CDD:182093" gene complement(589274..591250) /gene="hrsA" /locus_tag="SF0566" /db_xref="GeneID:1023536" CDS complement(589274..591250) /gene="hrsA" /locus_tag="SF0566" /codon_start=1 /transl_table=11 /product="PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC" /protein_id="NP_706503.1" /db_xref="GeneID:1023536" /translation="MVLFCRAHWRDYKNDQVRIMMNLTTLTHRDALCLNARFTSREEA IHALTQRLAALGKISSTEQFLKEVYRRESLGPTALSEGLAVPHGKTAAVKEAAFAVAT LSEPLQWEGVDGPEAVDLVVLLAIPLNEAGTTHMQLLTALTTRLADDEIRARIQSATT PDELLSALDDKGGTQPSASFSNAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNVY VEKQGANGIEGRLTADQLNSATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEAL IQQSLTLERGDETRTLQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLL SQIFGLQDLFNEENSWLWMYRKLGGGLLGILMVPVLAAYTAYSLADKPALAPGFAAGL AANMIGSGFLGAVVGGLIAGYLIRWMKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLML FVVGEPVAWINNSLTAWLNGLSGSNALLLGAILGFMCSFDLGGPVNKAAYAFCLGAMA NGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPM AIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWF GAALVGAAISTAILLIWRRHAVKHGNYLTDGVMP" misc_feature complement(589298..591190) /gene="hrsA" /locus_tag="SF0566" /note="PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional; Region: PRK09765" /db_xref="CDD:182066" gene 591360..592082 /gene="farR" /locus_tag="SF0567" /db_xref="GeneID:1026068" CDS 591360..592082 /gene="farR" /locus_tag="SF0567" /note="Code: K; COG: COG2188" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor MngR" /protein_id="NP_706504.1" /db_xref="GeneID:1026068" /translation="MGHKPLYRQIADRIREQIARGELKPGDALPTESALQTEFGVSRV TVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVDTHSEVLIF EVIPADDFLQQQLQITVQDRVWHVKRVRYRKQKPMALEETWMPLALFPDLTWQVMENS KYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGRVFEY SRNAFNTDDYKFTLIAQRKSSR" misc_feature 591360..592079 /gene="farR" /locus_tag="SF0567" /note="GntR family transcriptional regulator; Region: PRK09764" /db_xref="CDD:182065" gene complement(592185..593054) /gene="sucD" /locus_tag="SF0568" /db_xref="GeneID:1023456" CDS complement(592185..593054) /gene="sucD" /locus_tag="SF0568" /note="Code: C; COG: COG0074" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase subunit alpha" /protein_id="NP_706505.1" /db_xref="GeneID:1023456" /translation="MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKG GTTHLGLPVFNTVREAVAATGASASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYE AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEA AAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS LADIGEALKTVLK" misc_feature complement(592188..593051) /gene="sucD" /locus_tag="SF0568" /note="Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]; Region: SucD; COG0074" /db_xref="CDD:439844" gene complement(593054..594220) /gene="sucC" /locus_tag="SF0569" /db_xref="GeneID:1023481" CDS complement(593054..594220) /gene="sucC" /locus_tag="SF0569" /note="Code: C; COG: COG0045" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase subunit beta" /protein_id="NP_706506.1" /db_xref="GeneID:1023481" /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV VKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT DIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQG RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA DGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV KLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIG AVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK" misc_feature complement(593057..594220) /gene="sucC" /locus_tag="SF0569" /note="Succinyl-CoA synthetase, beta subunit [Energy production and conversion]; Region: SucC; COG0045" /db_xref="CDD:439815" gene complement(594314..595531) /gene="sucB" /locus_tag="SF0570" /db_xref="GeneID:1023500" CDS complement(594314..595531) /gene="sucB" /locus_tag="SF0570" /note="Code: C; COG: COG0508" /codon_start=1 /transl_table=11 /product="dihydrolipoamide succinyltransferase" /protein_id="NP_706507.1" /db_xref="GeneID:1023500" /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK VVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ QASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAP AAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRK QYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTP RGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMS TPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIK ELLEEPTRLLLDV" misc_feature complement(594317..595528) /gene="sucB" /locus_tag="SF0570" /note="2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase; Region: PRK05704" /db_xref="CDD:235571" gene complement(595546..598347) /gene="sucA" /locus_tag="SF0571" /db_xref="GeneID:1023497" CDS complement(595546..598347) /gene="sucA" /locus_tag="SF0571" /note="Code: C; COG: COG0567" /codon_start=1 /transl_table=11 /product="2-oxoglutarate dehydrogenase subunit E1" /protein_id="NP_706508.1" /db_xref="GeneID:1023497" /translation="MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRST FQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFR GHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELISAL KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLG AKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQ DLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSV RARLDRLDEPNSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNL YRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPE AVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF HRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIW EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGT FLPAIGEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAM QEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGY MSVHQKQQQDLVNDALNVE" misc_feature complement(595555..598344) /gene="sucA" /locus_tag="SF0571" /note="2-oxoglutarate dehydrogenase E1 component; Reviewed; Region: sucA; PRK09404" /db_xref="CDD:236499" gene complement(598329..598589) /locus_tag="SF0572" /db_xref="GeneID:1023504" CDS complement(598329..598589) /locus_tag="SF0572" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706509.1" /db_xref="GeneID:1023504" /translation="MNALSGLQVITRRPDKRSASGVTKKCRKSLKTAPDTKTVFKGSF ASHYVDKSSQVNPGTHITVRGSIHGEVSIKKMLKGSRCRTAL" gene complement(598648..599364) /gene="sdhB" /locus_tag="SF0573" /db_xref="GeneID:1027542" CDS complement(598648..599364) /gene="sdhB" /locus_tag="SF0573" /note="Code: C; COG: COG0479" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase iron-sulfur subunit" /protein_id="NP_706510.1" /db_xref="GeneID:1027542" /translation="MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKE KDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRD LVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCP SFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPK GLNPTRAIGHIKSMLLQRNA" misc_feature complement(598657..599355) /gene="sdhB" /locus_tag="SF0573" /note="succinate dehydrogenase iron-sulfur subunit; Reviewed; Region: sdhB; PRK05950" /db_xref="CDD:235652" gene complement(599380..601146) /gene="sdhA" /locus_tag="SF0574" /db_xref="GeneID:1023512" CDS complement(599380..601146) /gene="sdhA" /locus_tag="SF0574" /note="Code: C; COG: COG1053" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase flavoprotein subunit" /protein_id="NP_706511.2" /db_xref="GeneID:1023512" /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHIN TGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERY APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACV SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALHDASESDVEASLDRLNRWNNN RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESM TRRSVNMEPKLRPAFPPKIRTY" misc_feature complement(599383..601068) /gene="sdhA" /locus_tag="SF0574" /note="FAD binding domain; Region: FAD_binding_2; cl46878" /db_xref="CDD:481218" gene complement(601146..601493) /gene="sdhD" /locus_tag="SF0575" /db_xref="GeneID:1023493" CDS complement(601146..601493) /gene="sdhD" /locus_tag="SF0575" /note="Code: C; COG: COG2142" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase cytochrome b556 small membrane subunit" /protein_id="NP_706512.1" /db_xref="GeneID:1023493" /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT YEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALV VYVIYGFVVVWGV" misc_feature complement(601149..601493) /gene="sdhD" /locus_tag="SF0575" /note="succinate dehydrogenase membrane anchor subunit; Region: sdhD; PRK09488" /db_xref="CDD:181901" misc_feature complement(order(601173..601175,601182..601184, 601248..601250,601350..601352,601359..601361, 601434..601436)) /gene="sdhD" /locus_tag="SF0575" /note="SdhC subunit interface [polypeptide binding]; other site" /db_xref="CDD:239574" misc_feature complement(order(601269..601271,601281..601283, 601290..601292,601413..601415,601425..601427)) /gene="sdhD" /locus_tag="SF0575" /note="proximal heme binding site [chemical binding]; other site" /db_xref="CDD:239574" misc_feature complement(order(601365..601367,601371..601373, 601383..601385)) /gene="sdhD" /locus_tag="SF0575" /note="cardiolipin binding site [active]" /db_xref="CDD:239574" misc_feature complement(order(601239..601241,601248..601253, 601260..601262)) /gene="sdhD" /locus_tag="SF0575" /note="Iron-sulfur protein interface [active]" /db_xref="CDD:239574" misc_feature complement(601245..601247) /gene="sdhD" /locus_tag="SF0575" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:239574" gene complement(601487..601891) /gene="sdhC" /locus_tag="SF0576" /db_xref="GeneID:1023529" CDS complement(601487..601891) /gene="sdhC" /locus_tag="SF0576" /note="Code: C; COG: COG2009" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase cytochrome b556 subunit" /protein_id="NP_706513.3" /db_xref="GeneID:1023529" /translation="MWALFMIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFV AVGILQWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFG YLEETFEAGKRSAKISFVITVVLSLLAGVLVW" misc_feature complement(601490..601876) /gene="sdhC" /locus_tag="SF0576" /note="succinate dehydrogenase cytochrome b556 subunit; Region: sdhC; PRK09487" /db_xref="CDD:181900" misc_feature complement(order(601589..601591,601595..601597, 601604..601606,601784..601786,601805..601807, 601814..601816,601820..601828,601841..601852)) /gene="sdhC" /locus_tag="SF0576" /note="Iron-sulfur protein interface [active]" /db_xref="CDD:239579" misc_feature complement(order(601784..601786,601793..601798, 601817..601819)) /gene="sdhC" /locus_tag="SF0576" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:239579" misc_feature complement(order(601505..601507,601592..601594, 601655..601657,601703..601705,601730..601735, 601742..601744,601751..601753,601784..601786)) /gene="sdhC" /locus_tag="SF0576" /note="SdhD (CybS) interface [polypeptide binding]; other site" /db_xref="CDD:239579" misc_feature complement(order(601622..601627,601763..601768, 601784..601786)) /gene="sdhC" /locus_tag="SF0576" /note="proximal heme binding site [chemical binding]; other site" /db_xref="CDD:239579" gene 602585..603868 /gene="gltA" /locus_tag="SF0577" /db_xref="GeneID:1023492" CDS 602585..603868 /gene="gltA" /locus_tag="SF0577" /note="Code: C; COG: COG0372" /codon_start=1 /transl_table=11 /product="type II citrate synthase" /protein_id="NP_706514.1" /db_xref="GeneID:1023492" /translation="MADTKAKLNLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFD PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYD EFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILER AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD DLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW IAHWSEMHSYGMKIARPRQLYTGYEKRDFKSDIKR" misc_feature 602585..603832 /gene="gltA" /locus_tag="SF0577" /note="citrate synthase; Region: gltA; PRK05614" /db_xref="CDD:180164" gene 604259..604825 /gene="ybgD" /locus_tag="SF0578" /db_xref="GeneID:1027546" CDS 604259..604825 /gene="ybgD" /locus_tag="SF0578" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="fimbrial-like protein" /protein_id="NP_706515.1" /db_xref="GeneID:1027546" /translation="MFKGQKTLAALAVSLLFTAPVYAADEGSGEIHFKGEVIEAPCEI HQDDIDKEVELGQVTTSHINQSHHSDAVAVDLLLVNCDLENSSNGSGGKISKVAVTFD SSAKTTGADPILNNTSTGEATGVGVRLMNKDQSNIVLGTATPDIDLAPTSSEQTLNFF AWMEQIDQATPVTPGAVTANATYVLDYK" misc_feature 604271..604822 /gene="ybgD" /locus_tag="SF0578" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" gene 604876..607335 /gene="ybgQ" /locus_tag="SF0579" /db_xref="GeneID:1023489" CDS 604876..607335 /gene="ybgQ" /locus_tag="SF0579" /note="Code: N; COG: COG3188" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706516.2" /db_xref="GeneID:1023489" /translation="MDTVNIYRLSFVSCLVVAMPCALAVEFNLNVLDKSMRDRIDISL LKEKGVIAPGEYFVSVAVNNNQISNEQKINWHKNDDKTIPCINDLLVDKFGLKPEVRQ SLPLINQCVDFSSRPEMLFNFDQANQQLNISIPQAWLAWHSENWTPPSTWKEGVAGVL MDYNLFASSYRPQDGSSSTNLNAYGTAGINTGAWRLRSDYQLNHTDSDDNHEQSGEIS RTYLFRPLPQLGSKLTLGETDFSPNIFDGFSYTGAALASDDRMLPWELRGYAPQISGI AQTNATVTISQSGRVIYQKKVPPGPFIIDDLNQSVQGTLDVKVTEEDGRVNNFQVSAA STPFLTRQGQVRYKLAAGQPRPSMSHQTENETFFSNEVSWGMLSNTSLYSGLLLSGDD YHSAAMGIGQNMLWLGALSFDVTWASSHFDTQQDERGLSYRFNYSKQVDATNSTISLA AYRFSDRHFHSYANYLDHKYNDSDAQDEKQTISLSVGQPITPLNLNLYANLLHQTWWN ADASTTANITAGFNVDIGDWRDISISTSFNTTHYEDKDRDNQIYLSISLPFGNGGRVG YDMQNSSHSTTHRMSWNDTLDERNSWGMSAGLQSDRPDNGAQVSGNYQHLSSAGEWDI SGTYAANDYSSVSSSWSGSFTATQYGAAFHRRSSTNEPRLMVSTDGVADIPVQGNLDY TNHFGIAVVPLISSYQPSTVAVNMNDLPDGVTVAENVIKETWIEGAIGYKSLASRSGK DVNVIIRNASGQFPPLGADIRQDDSGISVGMVGEEGHAWLSGVAENQKFTVVWGDSQH CSLHLPEHMEDTANRLILPCH" misc_feature 604888..607332 /gene="ybgQ" /locus_tag="SF0579" /note="Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures]; Region: FimD; COG3188" /db_xref="CDD:442421" gene 607350..608081 /gene="ybgP" /locus_tag="SF0580" /db_xref="GeneID:1023506" CDS 607350..608081 /gene="ybgP" /locus_tag="SF0580" /note="Code: N; COG: COG3121" /codon_start=1 /transl_table=11 /product="chaperone" /protein_id="NP_706517.2" /db_xref="GeneID:1023506" /translation="MTFMKGLPLLLLVASLCSHAALQPDRTRIVFNANDKATSLRVDN RSDKLPYLAYSWLENEKGEKSDDLLVALPPIQRLEPKATTQVRIVKQASTTKLPGDRE TLFFYNMREIPPAPEKNSDHAVLQVAIQSRIKVFWRPAALRKKAGEKVELQLQVSQQG NQLTLKNPTAYYLTIAYLGRNEKGVLPGFKTVMVAPFSTVNTNTGNYSGSQFYLGYMD DYGALRMTTLNCSGQCHLQAVEAKK" misc_feature 607389..608015 /gene="ybgP" /locus_tag="SF0580" /note="P pilus assembly protein, chaperone PapD [Extracellular structures]; Region: FimC; COG3121" /db_xref="CDD:442355" gene 608048..609154 /gene="ybgO" /locus_tag="SF0581" /pseudo /db_xref="GeneID:1023558" misc_feature 608048..609154 /gene="ybgO" /locus_tag="SF0581" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1786935 (363 aa). BLAST with identity of 96% in 369 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct." /pseudo gene 609261..610352 /gene="abrB" /locus_tag="SF0582" /db_xref="GeneID:1023496" CDS 609261..610352 /gene="abrB" /locus_tag="SF0582" /note="Code: R; COG: COG3180" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_706518.2" /db_xref="GeneID:1023496" /translation="MLYRYTKEKIMRERRMPVLQWGMLCVLSLLLSIGFLAVHLPAAL LLGPMIAGIIFSMRGITLQLPRSAFLAAQAILGCMIAQNLTGSILTTLAANWPIVLAI LLVTLLSSAIVGWLLVRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYL RVLFVAGAAVLVTRMMLGDNAEAVNQQIVWFPPVSINLLLTILLAVVAGTAGCMLRLP SGTMLIPMLAGAVLQSGQLITIELPEWLLAMAYMAIGWRIGLGFDKQILLRALRPLPQ ILLSIFALLAICAGMAWGLTRFMHIDFMTAYLATSPGGLDTVAVIAAGSNADMALIMA MQTLRLFSILLTGPAIARFISTYAPKRSA" misc_feature 609291..610343 /gene="abrB" /locus_tag="SF0582" /note="Uncharacterized membrane protein AbrB, regulator of aidB expression [General function prediction only]; Region: AbrB; COG3180" /db_xref="CDD:442413" gene complement(610349..611140) /gene="nei" /locus_tag="SF0583" /db_xref="GeneID:1023561" CDS complement(610349..611140) /gene="nei" /locus_tag="SF0583" /note="Code: L; COG: COG0266" /codon_start=1 /transl_table=11 /product="endonuclease VIII" /protein_id="NP_706519.1" /db_xref="GeneID:1023561" /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQH VTHVETRGKALLTHFPNGLTLYSHNQLYGVWRVVDTGEEPQTTRVLRVKLQTADKTIL LYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLD QAFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDE NKHHGALFRFKVFHRDGELCERCGGIIEKTTLSSRPFYWCPGCQH" misc_feature complement(610352..611140) /gene="nei" /locus_tag="SF0583" /note="endonuclease VIII; Provisional; Region: PRK10445" /db_xref="CDD:182467" gene complement(611176..611910) /gene="ybgL" /locus_tag="SF0584" /db_xref="GeneID:1023575" CDS complement(611176..611910) /gene="ybgL" /locus_tag="SF0584" /note="Code: R; COG: COG1540" /codon_start=1 /transl_table=11 /product="LamB/YcsF family protein" /protein_id="NP_706520.1" /db_xref="GeneID:1023575" /translation="MKIDLNADLGEGCASDAELLTLVSSANIACGFHAGDAQTMQACV REAIKNGVAIGAHPSFPDRENFGRSAMQLPPETVYAQTLYQIGALATIARAQGGVMRH VKPHGMLYNQAAKEAQLADAIARAVYACDPALVLVGLAGSELIRAGKQYGLTTREEVF ADRGYQADGSLVPRSQPGALIENEEQALAQTLEMVQHGRVKSITGEWATVAAQTVCLH GDGEHALAFARRLRATFAKKGIVVAA" misc_feature complement(611185..611904) /gene="ybgL" /locus_tag="SF0584" /note="Escherichia coli putative lactam utilization protein YbgL and similar proteins; Region: LamB_YcsF_YbgL_like; cd10800" /db_xref="CDD:212111" misc_feature complement(order(611257..611259,611389..611391, 611398..611400,611422..611424,611431..611433, 611578..611580,611590..611595,611599..611601, 611707..611709,611740..611742,611887..611889)) /gene="ybgL" /locus_tag="SF0584" /note="putative active site [active]" /db_xref="CDD:212111" gene complement(611900..612832) /gene="ybgK" /locus_tag="SF0585" /pseudo /db_xref="GeneID:1023565" misc_feature complement(611900..612832) /gene="ybgK" /locus_tag="SF0585" /note="Similar to Escherichia coli K12 carboxylase gi: 1786930 (311 aa). BLAST with identity of 97% in 310 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(612826..613482) /gene="ybgJ" /locus_tag="SF0586" /db_xref="GeneID:1023483" CDS complement(612826..613482) /gene="ybgJ" /locus_tag="SF0586" /note="Code: E; COG: COG2049" /codon_start=1 /transl_table=11 /product="carboxylase" /protein_id="NP_706521.1" /db_xref="GeneID:1023483" /translation="MQRARCYLIGETAVVLELEPPVTLASQKRIWRLAQRLVDMPNVV EAIPGMNNITVILRNPESLALDAIERLQRWWEESEALEPESRFIEIPVVYGGAGGPDL AVVAAYCGLSEKQVVELHSSVEYVVWFLGFQPGFPYLGSLPEQLHTPRRAEPRLLVPA GSVGIGGPQTGVYPLATPGGWQLIGHTSLSLFDPARDEPILLRPGDSVRFVPQKEGIC " misc_feature complement(612850..613458) /gene="ybgJ" /locus_tag="SF0586" /note="Carboxyltransferase domain, subdomain C and D; Region: CT_C_D; cl19310" /db_xref="CDD:473162" gene complement(613505..614248) /gene="ybgI" /locus_tag="SF0587" /db_xref="GeneID:1023563" CDS complement(613505..614248) /gene="ybgI" /locus_tag="SF0587" /note="Code: S; COG: COG0327" /codon_start=1 /transl_table=11 /product="metal-binding protein" /protein_id="NP_706522.1" /db_xref="GeneID:1023563" /translation="MKNTELEQLINEKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA SQALLDEAVRLGADAVIVHHGYFWKGESPVIRGMKRNRLKTLLANDINLYGWHLPLDA HPELGNNAQLAALLGITVMGEIEPLVPWGELTMPVPGMELASWIEARLGRKPLWCGDT GPEVVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT ERGGIRALSEWLNENTDLDVTFIDIPNPA" misc_feature complement(613508..614248) /gene="ybgI" /locus_tag="SF0587" /note="type 2 GTP cyclohydrolase I; Region: PRK10799" /db_xref="CDD:182741" gene 614519..616000 /gene="ybgH" /locus_tag="SF0588" /db_xref="GeneID:1026075" CDS 614519..616000 /gene="ybgH" /locus_tag="SF0588" /note="Code: E; COG: COG3104" /codon_start=1 /transl_table=11 /product="dipeptide/tripeptide permease D" /protein_id="NP_706523.1" /db_xref="GeneID:1026075" /translation="MNKHASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYND THAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSF LYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGY AQEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVNKKVLRATNFLLPNWGWLLV LLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKAENQKQRKELGLIVTLTFF SMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKE SVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAEL FIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINY SINAYIEVFDQITWGALACVGLVLMIWLYQALKFRNRALALES" misc_feature 614519..615997 /gene="ybgH" /locus_tag="SF0588" /note="dipeptide permease; Region: PRK15462" /db_xref="CDD:237971" misc_feature order(614582..614584,614594..614596,614870..614872, 614948..614950,614957..614962,614969..614971, 615368..615370,615467..615472,615479..615481, 615689..615691) /gene="ybgH" /locus_tag="SF0588" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340904" gene complement(616150..617568) /gene="phrB" /locus_tag="SF0589" /db_xref="GeneID:1023530" CDS complement(616150..617568) /gene="phrB" /locus_tag="SF0589" /note="Code: L; COG: COG0415" /codon_start=1 /transl_table=11 /product="deoxyribodipyrimidine photolyase" /protein_id="NP_706524.1" /db_xref="GeneID:1023530" /translation="MTTHLAWFRQDLRLHDNLALAAACRNSSARVLALYIATPRKWET HNMSPRQAELINAQLNGLQIALAEKGIPLLFREVDDFVASVEIVKQVCAENSVTHLFY NYQYEVNERARDVDVERALRNVVCEGFDDSVILPPGAVMTGNHEMYKVFTPFKNAWLK RLREGMPECVAAPKVRSSGSIKPAPSITLNYPRQSFDTAHFPVEEKAAIAQLRQFCEN GAGEYEQQRDFPAVEGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGAGSVWLSEL IWREFYRHLMTYYPSLCKHRPFIAWTDRVQWQSNPAHLQAWQKGKTGYPIIDAAMRQL NSTGWMHNRLRMITASFLVKDLLIDWREGERYFMSQLIDGDLAANNGGWQWAASTGTD AAPYFRIFNPITQGEKFDREGEFIRRWLPELRDVPGKAVHEPWKWAQKAGVKLDYPQP IVEHKEARVQTLAAYEAARKGK" misc_feature complement(616153..617568) /gene="phrB" /locus_tag="SF0589" /note="deoxyribodipyrimidine photolyase; Provisional; Region: PRK10674" /db_xref="CDD:236734" gene complement(617565..618074) /gene="ybgA" /locus_tag="SF0590" /db_xref="GeneID:1023550" CDS complement(617565..618074) /gene="ybgA" /locus_tag="SF0590" /note="Code: S; COG: COG3272" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706525.1" /db_xref="GeneID:1023550" /translation="MNLQRFDDSTLIRIFALHELHRLKEHGLTRGALLDYHSRYKLVF LAHSQPEYRKLGPFVADIHQWQNLDDFYNQYRQRVIVLLSHPANPRDHTNVLMHVQGY FRPHIDSTERQQLAALIDSYRRGEQPLLAPLMRIKHYMALYPDAWLSGQRYFELWPRV INLRHSGVL" misc_feature complement(617568..618074) /gene="ybgA" /locus_tag="SF0590" /note="hypothetical protein; Provisional; Region: PRK10167" /db_xref="CDD:182280" gene 618203..618490 /locus_tag="SF0591" /db_xref="GeneID:1023544" CDS 618203..618490 /locus_tag="SF0591" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706526.1" /db_xref="GeneID:1023544" /translation="MAEHDITPEVTISKTQRRYKVGYVRARHQDRKTGIARYYSQHPS LHLKGDWLKEAGFDTGRGVTVKISEGGLTIIADSDEVQELRDGMFSVLNES" misc_feature 618248..618430 /locus_tag="SF0591" /note="Toxin SymE, type I toxin-antitoxin system; Region: SymE_toxin; pfam08845" /db_xref="CDD:370150" gene complement(619508..622315) /locus_tag="SF0594" /db_xref="GeneID:1023568" CDS complement(619508..622315) /locus_tag="SF0594" /codon_start=1 /transl_table=11 /product="Rhs-family protein" /protein_id="NP_706529.1" /db_xref="GeneID:1023568" /translation="MEEAFWAARQGDALLHTSFMADVLGAVLEVAANVVIDALIVGTT SLLATSVGITMGCTAVVLTGFVAGVAMVYTGVTEKVSEACSALANMLFPPQIEGYILT GSGDTWINSKPAARAAATAASRQDIEAQEAQAKAEQEEAQRQEDARTFRDVAGEYLEM AGAIALAVNPVTGPVLMSRALHDQLSTEEGRSEMVDGVTHFVSELWQPTVASAAPGST PTPDDKIDCHKHPSSLTQFLAQKKAAFLDDPLGTALNLLNPGGMLETAFQGVNAVIGS ISNLFKGDDEPPAAEYIAEGARDVRINSQPATRSGARCTCEARVVNEPGNGAFVSPDV RIGGPLLVVRDIRSGRSQITLVATVALMFLRPGKMLSKIACFAASVGMSMLTQKATSA LPHPVNAATGAKYLADDDDFDFSLPGHFPLDWQRVYSSRDERTEGMFGQGWSVMYEVS LVCTPGSADENCMTFVSGMGRRLDMEAVLPGGGFYSPGEGLAVRRGEQGHWLISSDDG QCFLFEADPHHPQRQRLKMLGDRNSNCLNLYYDDRGRIVEISGEQQRPCIRLYYELAA HPRRVTQIYQHFPETAPLLLRRYSYDEAGHLNGVYDSTGHLLREFAYDENHCMTLHRQ PGGEGYYYQWGWYEGPDDAAWRVTGHHTDSGEQYRLAWDLAQRRLCVTDGLGRTRYHQ WDAQNQVTAYQDEAGQVTTFRWSDEERLLLGMTDPQGGKWRYVYDLQGHITETHDPLG RVEQAQWHPVWHQPETEVDAAGNLLGRRAGERATAENSVVPFNRLMSYRGVHYRYDEF GRAVEKEGRSGTQSYRYDAEHRMVEVTTARGTYRYVYDALGRRTEKQHISPDGKPYNR TKFLWDGMRLAQESRPEGTGSLYIYRDQGSYEPLARVDKAGKEGPNRILYFHTDVNGA PVRDDGQRRENRVGDGVSGLG" misc_feature complement(621305..>621466) /locus_tag="SF0594" /note="proline-alanine-alanine-arginine (PAAR) repeat superfamily; Region: PAAR_like; cl21497" /db_xref="CDD:451275" misc_feature complement(<619760..621223) /locus_tag="SF0594" /note="RHS element core protein; Region: RHS_core; NF041261" /db_xref="CDD:469161" mobile_element complement(622916..623662) /note="partial" /mobile_element_type="insertion sequence:IS1" gene complement(622931..623326) /gene="insB" /locus_tag="SF0595" /db_xref="GeneID:1023537" CDS complement(622931..623326) /gene="insB" /locus_tag="SF0595" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706530.1" /db_xref="GeneID:1023537" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLKLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(622934..623323) /gene="insB" /locus_tag="SF0595" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(623353..623628) /gene="insA" /locus_tag="SF0596" /db_xref="GeneID:1023525" CDS complement(623353..623628) /gene="insA" /locus_tag="SF0596" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706531.1" /db_xref="GeneID:1023525" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<623356..623607) /gene="insA" /locus_tag="SF0596" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(624101..624307) /gene="ybfA" /locus_tag="SF0597" /db_xref="GeneID:1023519" CDS complement(624101..624307) /gene="ybfA" /locus_tag="SF0597" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706532.1" /db_xref="GeneID:1023519" /translation="MELYREYPAWLIFLRRTYAVAAGVLALPFMLFWKDRARFYSYLH RVWSKTSDKPVWMDQAEKATGDFY" misc_feature complement(624116..624298) /gene="ybfA" /locus_tag="SF0597" /note="Protein of unknown function (DUF2517); Region: DUF2517; pfam10725" /db_xref="CDD:431458" gene 624709..626382 /gene="kdpA" /locus_tag="SF0598" /db_xref="GeneID:1023557" CDS 624709..626382 /gene="kdpA" /locus_tag="SF0598" /note="Code: P; COG: COG2060" /codon_start=1 /transl_table=11 /product="potassium-transporting ATPase subunit A" /protein_id="NP_706533.2" /db_xref="GeneID:1023557" /translation="MAAQGFLLIATFLLVLMVLARPLGSGLARLINDIPLPGTAGVER ILFRLPGVSDHEMNWKQYLCAILGLNMLGLAVLFFMLLGQHYLPLNPQQLPGLSWDLA LNTAVSFVTNTNWQSYSGETTLSYFSQMAGLTVQNFLSAASGIAVIFAFIRAFTRQSM STLGNAWVDLLRITLWVLVPVALLIALFFIQQGAQQNFLPYQAVNTVEGAQQLLPMGP VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNFVQMLAIFLIPTALCFAFGEVTGD RRQGRMLLWAMSVIFVICVGVVMWAEVQGNPHLLALGADSSINMEGKESRFGVLVSSL FAVVTTAASCGAVIAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMMLFVLLAVF IAGLMIGRTPEYLGKKIDVREMKLTALAILVTPTLVLMGAALAMMTDAGRSAMLNPSP HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV SKKSQPASSGTLPTHGPLFVGLLIGTVLLVGALTFIPALALGPVAEYLS" misc_feature 624709..626379 /gene="kdpA" /locus_tag="SF0598" /note="K+-transporting ATPase, KdpA subunit [Inorganic ion transport and metabolism]; Region: KdpA; COG2060" /db_xref="CDD:441663" gene 626405..628452 /gene="kdpB" /locus_tag="SF0599" /pseudo /db_xref="GeneID:1023515" misc_feature 626405..628452 /gene="kdpB" /locus_tag="SF0599" /note="'Similar to Escherichia coli K12 ATPase of high-affinity potassium transport system, B chain gi: 1786914 (683 aa). BLAST with identity of 97% in 683 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene 629026..631706 /gene="kdpD" /locus_tag="SF0600" /pseudo /db_xref="GeneID:1023538" misc_feature 629026..631706 /gene="kdpD" /locus_tag="SF0600" /note="Similar to Escherichia coli K12 sensor for high-affinity potassium transport system gi: 1786912 (895 aa). BLAST with identity of 97% in 894 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 631703..632388 /gene="kdpE" /locus_tag="SF0601" /pseudo /db_xref="GeneID:1023531" misc_feature 631703..632388 /gene="kdpE" /locus_tag="SF0601" /note="Similar to Escherichia coli K12 regulator of kdp operon (transcriptional effector) gi: 1786911 (226 aa). BLAST with identity of 96% in 229 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 633213..635275 /gene="speF" /locus_tag="SF0603" /pseudo /db_xref="GeneID:1023532" misc_feature 633213..635275 /gene="speF" /locus_tag="SF0603" /note="'Similar to Escherichia coli K12 ornithine decarboxylase isozyme, inducible gi: 1786909 (733 aa). BLAST with identity of 95% in 688 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene 635272..636591 /gene="potE" /locus_tag="SF0604" /db_xref="GeneID:1023576" CDS 635272..636591 /gene="potE" /locus_tag="SF0604" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="putrescine transporter" /protein_id="NP_706535.1" /db_xref="GeneID:1023576" /translation="MSQAKSNKMGVVQLTILTMVNMMGSGIIMLPTKLAEVGTISIIS WLVTAVGSMALAWAFAKCGMFSRKSGGMGGYAEYAFGKSGNFIANYTYGVSLLIANVA IAISAVGYGTELLGASLSPVQIGLATIGVLWICTVANFGGARITGQISSITVWGGIIP VVGLCIIGWFWFSPTLYVDSWNPHHAPFFSAVGSSIAMTLWAFLGLESACANTDVVEN PERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFTPEVGKV IMALMVMSCCGSLLGWQFTIAQVFKSSSDEGYFPKIFSRVTKVDAPVQGMLTIVIIQS GLALMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVANFVA FVGAMYSFYALYSSGEEAMLYGSIVTFLGWTLYGLVSPRFELKNKHG" misc_feature 635281..636588 /gene="potE" /locus_tag="SF0604" /note="putrescine transporter; Provisional; Region: potE; PRK10655" /db_xref="CDD:182622" gene complement(636647..638287) /gene="pgm" /locus_tag="SF0605" /db_xref="GeneID:1023520" CDS complement(636647..638287) /gene="pgm" /locus_tag="SF0605" /note="Code: G; COG: COG0033" /codon_start=1 /transl_table=11 /product="phosphoglucomutase" /protein_id="NP_706536.2" /db_xref="GeneID:1023520" /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT SGHRGSAARHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP NGGPADTNVTKVVEDKANALMADGLKGVKRISLDEAMASGYVKEQDLVQPFVEGLADI VDMAAIQKAGLTLGVDPLGGSGIEYWKRIGEYYNLNLTIVNDQVDQTFRFMHLDKDGA IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ HRPQWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAKRFGAPSYNRLQA AATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA" misc_feature complement(636656..638284) /gene="pgm" /locus_tag="SF0605" /note="phosphoglucomutase, alpha-D-glucose phosphate-specific; Region: pgm; TIGR01132" /db_xref="CDD:273459" misc_feature complement(order(636740..636742,636755..636763, 636767..636769,637106..637108,637112..637114, 637118..637120,637169..637177,637238..637240, 637361..637366,637370..637372,637376..637378, 637820..637822,637844..637852,638144..638146, 638153..638155,638159..638161)) /gene="pgm" /locus_tag="SF0605" /note="active site" /db_xref="CDD:100094" misc_feature complement(order(636740..636742,636755..636763, 636767..636769,637106..637108,637112..637114, 637118..637120,637169..637171,637175..637177, 637238..637240,637361..637363,637850..637852, 638153..638155)) /gene="pgm" /locus_tag="SF0605" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100094" misc_feature complement(order(637364..637366,637370..637372, 637376..637378,637850..637852)) /gene="pgm" /locus_tag="SF0605" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100094" gene complement(638313..638858) /gene="seqA" /locus_tag="SF0606" /db_xref="GeneID:1023526" CDS complement(638313..638858) /gene="seqA" /locus_tag="SF0606" /note="Code: L; COG: COG3057" /codon_start=1 /transl_table=11 /product="replication initiation regulator SeqA" /protein_id="NP_706537.2" /db_xref="GeneID:1023526" /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSAASQPAAP VTKEVRVASPAIVEAKPVKTIKDKVRAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLD AQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMI EHIMQSMQFPAELIEKVCGTI" misc_feature complement(638316..638858) /gene="seqA" /locus_tag="SF0606" /note="replication initiation negative regulator SeqA; Region: PRK11187" /db_xref="CDD:236874" gene 639044..639808 /gene="ybfF" /locus_tag="SF0607" /db_xref="GeneID:1026082" CDS 639044..639808 /gene="ybfF" /locus_tag="SF0607" /note="Code: R; COG: COG0596" /codon_start=1 /transl_table=11 /product="acyl-CoA esterase" /protein_id="NP_706538.1" /db_xref="GeneID:1026082" /translation="MKLNIRAQTAQNQHNNSPIVLVHGLFGSLDNLGVLARDLVNDHN IIQVDMRNHGLSPREPVMNYPAMAQDLVDTLDALQIDKATFIGHSMGGKAVMALTALA PDRIDKLVAIDIAPVDYHVRRHDEIFAAINAVSESDAQTRQQAAAIMRQHLNEEGVIQ FLLKSFVDGEWRFNVPVLWDQYPHIVGWEKIPAWDHPALFIPGGNSPYVSEQYRDDLL AQFPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND" misc_feature 639044..639805 /gene="ybfF" /locus_tag="SF0607" /note="esterase; Region: PRK10673" /db_xref="CDD:182637" gene 639879..640241 /gene="ybfE" /locus_tag="SF0608" /db_xref="GeneID:1023596" CDS 639879..640241 /gene="ybfE" /locus_tag="SF0608" /codon_start=1 /transl_table=11 /product="LexA regulated protein" /protein_id="NP_706539.2" /db_xref="GeneID:1023596" /translation="MYYGALSIRAEAWLIVSPEVTKIMAKEQTDRTTLDLFAHERRPG RPKTNPLSRDEQLRINKRNQLKRDKVRGLKRVELKLNAEAVEALNELAESRNMSRSEL IEEMLMQQLAALRSQGIV" misc_feature 639948..640217 /gene="ybfE" /locus_tag="SF0608" /note="LexA regulated protein; Provisional; Region: PRK11675" /db_xref="CDD:183272" gene 640381..640911 /gene="fldA" /locus_tag="SF0609" /db_xref="GeneID:1026090" CDS 640381..640911 /gene="fldA" /locus_tag="SF0609" /note="Code: C; COG: COG0716" /codon_start=1 /transl_table=11 /product="flavodoxin FldA" /protein_id="NP_706540.2" /db_xref="GeneID:1026090" /translation="MAIHGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL EAYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL GTIRDIIEPRGATIDADWPTAGYHFQASKGLADDDHFVGLAIDEDRHPELTADRVEKW VKQISEELHLDEILNA" misc_feature 640381..640890 /gene="fldA" /locus_tag="SF0609" /note="flavodoxin FldA; Validated; Region: PRK09267" /db_xref="CDD:236439" gene 641200..641646 /gene="fur" /locus_tag="SF0610" /db_xref="GeneID:1023593" CDS 641200..641646 /gene="fur" /locus_tag="SF0610" /note="Code: P; COG: COG0735" /codon_start=1 /transl_table=11 /product="ferric uptake regulator" /protein_id="NP_706541.1" /db_xref="GeneID:1023593" /translation="MTDNNTALKKAGLRVTLPRLKILEVLQEPDNHHVSAEDLYKRLI DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF SDDSIEARQGEIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHEGK" misc_feature 641200..641643 /gene="fur" /locus_tag="SF0610" /note="ferric uptake regulator; Provisional; Region: fur; PRK09462" /db_xref="CDD:236527" gene complement(641730..642056) /gene="ybfN" /locus_tag="SF0611" /db_xref="GeneID:1023598" CDS complement(641730..642056) /gene="ybfN" /locus_tag="SF0611" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706542.2" /db_xref="GeneID:1023598" /translation="MKKLILIAMMASGLVACAQSTAPQEDSRLKEAYSACINTAQGSP EKIEACQSVLNVLKKEKQHQQFADQESVRVLDYQQCLRATQTGNDQAVKADCDKVWQE IRSNNK" misc_feature complement(641736..641999) /gene="ybfN" /locus_tag="SF0611" /note="YbfN-like lipoprotein; Region: YbfN; pfam13982" /db_xref="CDD:433624" gene complement(642093..643499) /gene="ybfM" /locus_tag="SF0612" /db_xref="GeneID:1027545" CDS complement(642093..643499) /gene="ybfM" /locus_tag="SF0612" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706543.1" /db_xref="GeneID:1027545" /translation="MRTFSGKRSTLALAIAGVTAMSGFMAMPEARAEGFIDDSTLTGG IYYWQRERDRKDVTDGDKYKTNLSHSTWNANLDFQSGYAADMFGLDIAAFTAIEMAEN GDSSHPNEIAFSKSNKAYDEDWSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL APHWSFMPGTYQGAEAGANFDYGDAGALSFSYMWTNEYKAPWHLEMDEFYQNDKTTKV DYLHSIGAKYDFKNNFVLEAAFGQAEGYIDQYFAKASYKFDIAGSPLTTSYQFYGTRD KVDDRSVNDLYDGTAWLQALTFGYRAADVVDLRLEGTWIKADSQQGYFLQRMTPTYAS SNGRLDIWWDNRSDFNANGEKAVFFSAMYDLKNWNLPGFAIGASYVYAWDAKPATWQS NPDAYYDKNRTIEESAYSLDAVYTIQDGRAKGTMFKLHFTEYDNHSDIPSWGGGYGNI FQDERDVKFMVIAPFTIF" misc_feature complement(642213..643403) /gene="ybfM" /locus_tag="SF0612" /note="outer membrane porin, OprD family; Region: OprD; pfam03573" /db_xref="CDD:460978" gene complement(644078..645742) /gene="glnS" /locus_tag="SF0613" /db_xref="GeneID:1023539" CDS complement(644078..645742) /gene="glnS" /locus_tag="SF0613" /note="Code: J; COG: COG0008" /codon_start=1 /transl_table=11 /product="glutaminyl-tRNA synthetase" /protein_id="NP_706544.1" /db_xref="GeneID:1023539" /translation="MSEAEARPTNFIRQIIDEDLASGKHITVHTRFPPEPNGYLHIGH AKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGNVRYSSD YFDQLHAYAIELINKGLAYVDELTPEQIREYRGTLTQPGKNSPYRDRSVEENLALFEK MRAGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE DLNENAPRAMAVIDPVKLVIENYQGEGEMVTMPNHPNKPEMGSRQVPFSGEIWIDRAD FREEANKQYKRLVLGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPADG RKVKGVIHWVSAAHALPVEIRLYDRLFSVPNPGAADDFLSVINPESLVIKQGFAEPSL KDAVAGKAFQFEREGYFCLDSRHSTAEKPVFNRTVGLRDTWAKVGE" misc_feature complement(644087..645742) /gene="glnS" /locus_tag="SF0613" /note="glutaminyl-tRNA synthetase; Provisional; Region: PRK05347" /db_xref="CDD:235424" gene complement(645945..647891) /gene="nagE" /locus_tag="SF0614" /db_xref="GeneID:1023546" CDS complement(645945..647891) /gene="nagE" /locus_tag="SF0614" /codon_start=1 /transl_table=11 /product="PTS system N-acetyl glucosamine specific transporter subunits IIABC" /protein_id="NP_706545.1" /db_xref="GeneID:1023546" /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNVAFIAQA GGAIFDNLALIFAIGVASSWSKDSAGAAALAGAVGYFVLTKAMVTINPEINMGVLAGI ITGLVGGAAYNRWSDIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHAIH AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAVTAFLTGV TEPLEFLFMFLAPLLYLLHALLTGISLFVATLLGIHAGFSFSAGAIDYALMYNLPAAS QNVWMLLVMGVIFFAIYFVVFSLVIRMFNLKTPGREDKEDEIVTEEANSNTDSCLTQL ATNYIAAVGGTDNLKAIDACITRLRLTVADSARVNDTMCKRLGASGVVKLNKQTIQVI VGAKAESIGDAMKKVVARGPVAAASAEATPATAAPVAKPQAVPNAVSIAELVSPITGD VVALDQVPDEAFASKAVGDGVAVKPTDKIVVSPAAGTIVKIFNTNHAFCLETEKGAEI VVHMGIDTVALEGKGFKRLVEEGAQVSAGQPILEMDLDYLNANARSMISPVVCSNIDD FSGLLIKAQGHVVAGQTPLYEIKK" misc_feature complement(645948..647891) /gene="nagE" /locus_tag="SF0614" /note="PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional; Region: PRK10255" /db_xref="CDD:182338" gene 648224..649024 /gene="nagB" /locus_tag="SF0615" /db_xref="GeneID:1023570" CDS 648224..649024 /gene="nagB" /locus_tag="SF0615" /note="Code: G; COG: COG0363" /codon_start=1 /transl_table=11 /product="glucosamine-6-phosphate deaminase" /protein_id="NP_706546.1" /db_xref="GeneID:1023570" /translation="MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT PMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAE NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK TLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMIMVLGSQKALALQAAVEG CVNHMWTISCLQLHPKAIMVCDEPSTMELKVKTLRYFNELEAENIKGL" misc_feature 648224..649000 /gene="nagB" /locus_tag="SF0615" /note="glucosamine-6-phosphate isomerase; Region: nagB; TIGR00502" /db_xref="CDD:129593" misc_feature order(648344..648355,648434..648439,648632..648637, 648650..648652,648656..648658,648737..648739, 648845..648847) /gene="nagB" /locus_tag="SF0615" /note="active site" /db_xref="CDD:238693" misc_feature order(648671..648673,648677..648682,648704..648706, 648869..648889,648911..648919) /gene="nagB" /locus_tag="SF0615" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238693" misc_feature order(648674..648679,648695..648706) /gene="nagB" /locus_tag="SF0615" /note="allosteric site [active]" /db_xref="CDD:238693" misc_feature order(648710..648712,648719..648751,648761..648769) /gene="nagB" /locus_tag="SF0615" /note="active site lid [active]" /db_xref="CDD:238693" misc_feature order(648725..648727,648839..648841,648851..648853, 648944..648946,648953..648964) /gene="nagB" /locus_tag="SF0615" /note="hexamer (dimer of trimers) interface [polypeptide binding]; other site" /db_xref="CDD:238693" gene 649084..650232 /gene="nagA" /locus_tag="SF0616" /db_xref="GeneID:1023567" CDS 649084..650232 /gene="nagA" /locus_tag="SF0616" /note="Code: G; COG: COG1820" /codon_start=1 /transl_table=11 /product="N-acetylglucosamine-6-phosphate deacetylase" /protein_id="NP_706547.1" /db_xref="GeneID:1023567" /translation="MYALTQGRIFTGHEFLDDHAVVIADGLIKSVCPVAELPPEIEQR SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNYLPTLITT SDELMKQGVRVMREYLAKHPNQALGLHLEGPWLNLVKKGTHNPNFVRKPDAALVDFLC ENADVITKVTLAPEMVPAEVISKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLY NAMPYITGREPGLAGAILDEADIYCGIIADGLHVDYANIRNAKRLKGDKLCLVTDATA PAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVEHCGIALDEVLRM ATLYPARAIDVEKRLGTLAAGKVANLTAFTPDFKITKTIVNGNEVVTQ" misc_feature 649084..650229 /gene="nagA" /locus_tag="SF0616" /note="N-acetylglucosamine-6-phosphate deacetylase; Provisional; Region: nagA; PRK11170" /db_xref="CDD:183010" misc_feature order(649258..649260,649264..649266,649474..649476, 649507..649509,649666..649668,649729..649731, 649738..649743,649834..649836,649900..649902, 649999..650001) /gene="nagA" /locus_tag="SF0616" /note="active site" /db_xref="CDD:238434" misc_feature order(649735..649737,649753..649755,649759..649764, 649768..649770,649789..649794,649831..649842, 649846..649851,649855..649860,649867..649869) /gene="nagA" /locus_tag="SF0616" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238434" gene 650241..651461 /gene="nagC" /locus_tag="SF0617" /db_xref="GeneID:1023586" CDS 650241..651461 /gene="nagC" /locus_tag="SF0617" /note="Code: K; COG: COG1940" /codon_start=1 /transl_table=11 /product="nag (N-acetylglucosamine) operon transcriptional repressor" /protein_id="NP_706548.1" /db_xref="GeneID:1023586" /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQL APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDATITL FDLSSKVLAEEHYPLPERTQQTLEHALLNAIAQFIDSYQRKLRELIAISVILPGLVDP DSGKIHYMPHIQVENWGLVEALEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILV RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ RVLNLLKQGYQSRVPLDDCTIKTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFN PQKIVIAGEITEADKVLLPAIESCINTQALKAFRTNLPVVRSELDHRSAIGAFALVKR AMLNGILLQHLLEN" misc_feature 650313..650471 /gene="nagC" /locus_tag="SF0617" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cl46857" /db_xref="CDD:481197" misc_feature 650496..651440 /gene="nagC" /locus_tag="SF0617" /note="ATPase-like domain of N-acetylglucosamine repressor (NagC) and similar proteins; Region: ASKHA_ATPase_ROK_NagC; cd24075" /db_xref="CDD:466925" gene 651509..652261 /gene="nagD" /locus_tag="SF0618" /pseudo /db_xref="GeneID:1023541" misc_feature 651509..652261 /gene="nagD" /locus_tag="SF0618" /note="Similar to Escherichia coli K12 N-acetylglucosamine metabolism gi: 1786890 (251 aa). BLAST with identity of 97% in 251 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 652658..654205 /gene="asnB" /locus_tag="SF0619" /db_xref="GeneID:1023587" CDS 652658..654205 /gene="asnB" /locus_tag="SF0619" /note="Code: E; COG: COG0367" /codon_start=1 /transl_table=11 /product="asparagine synthetase AsnB" /protein_id="NP_706549.1" /db_xref="GeneID:1023587" /translation="MCSIFGVFDIKTDAVELRKKALELSRLMRHRGPDWSGIYASDNA ILAHERLSIVDVNAGAQPLYNQQKNHVLAVNGEIYNHQALRAEYGDRYQFQTGSDCEV ILALYQEKGPEFLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVAS EMKSLVPVCRTIKEFPAGSYLWSQDGEIRSYYHRDWFDFDAVKDNVTDKNELRQALED SVKSHLMSDVPYGVLLSGGLDSSIISAITKKYAARRVHHEIHFTVQEGLDAIRDVIYH IETYDVTTIRASTPMYLMSRKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNVKELHEE TVRKLLALHMYDCARANKAMSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKH ILRECFESYLPASVAWRQKEQFSDGVGYSWIDTLKEVAAQQVSDQQLETARFRFPYNT PTSKEAYLYREIFEELFPLPSAAECVPGGPSVACSSAKAIEWDEAFKKMDDPSGRAVG VHQSAYK" misc_feature 652658..654199 /gene="asnB" /locus_tag="SF0619" /note="asparagine synthetase B; Provisional; Region: asnB; PRK09431" /db_xref="CDD:236513" gene 654586..654662 /locus_tag="SF4448" /db_xref="GeneID:3161844" tRNA 654586..654662 /locus_tag="SF4448" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161844" gene 654672..654756 /locus_tag="SF4449" /db_xref="GeneID:3161767" tRNA 654672..654756 /locus_tag="SF4449" /product="tRNA-Leu" /codon_recognized="CUA" /db_xref="GeneID:3161767" gene 654780..654854 /locus_tag="SF4450" /db_xref="GeneID:3161765" tRNA 654780..654854 /locus_tag="SF4450" /product="tRNA-Gln" /codon_recognized="CAA" /db_xref="GeneID:3161765" gene 654889..654963 /locus_tag="SF4451" /db_xref="GeneID:3161763" tRNA 654889..654963 /locus_tag="SF4451" /product="tRNA-Gln" /codon_recognized="CAA" /db_xref="GeneID:3161763" gene 654979..655055 /locus_tag="SF4452" /db_xref="GeneID:3161785" tRNA 654979..655055 /locus_tag="SF4452" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161785" gene 655103..655177 /locus_tag="SF4453" /db_xref="GeneID:3161782" tRNA 655103..655177 /locus_tag="SF4453" /product="tRNA-Gln" /codon_recognized="CAG" /db_xref="GeneID:3161782" gene 655215..655289 /locus_tag="SF4454" /db_xref="GeneID:3161809" tRNA 655215..655289 /locus_tag="SF4454" /product="tRNA-Gln" /codon_recognized="CAG" /db_xref="GeneID:3161809" gene complement(655443..656618) /gene="ubiF" /locus_tag="SF0620" /db_xref="GeneID:1023566" CDS complement(655443..656618) /gene="ubiF" /locus_tag="SF0620" /note="Code: HC; COG: COG0654" /codon_start=1 /transl_table=11 /product="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase" /protein_id="NP_706550.2" /db_xref="GeneID:1023566" /translation="MTNQPTEIAIVGGGMVGGALALGLAQHGFSVTVIEHAEPAPFVA DSQPDVRISAISAASVSLLKGLGVWDAVQAMRCHPYRRLETWEWETAHVVFDAAELKL PLLGYMVENTVLQQALWQALEAHPKVTLRVPTSLIALHRDNDLQELELKGGETIRAKL VIGADGANSQVRQMAGIGVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLPL FDNWASLVWYDSPTRIRQLQNMNMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHAL QYVQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSYGEAWASYPVLKRY QMRRMADNFIMQSGMDLFYAGFSNNLPPLRFVRNLGLMAAERAGVLKRQALKYALGL" misc_feature complement(655446..656618) /gene="ubiF" /locus_tag="SF0620" /note="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed; Region: ubiF; PRK08020" /db_xref="CDD:181199" gene 656764..658188 /gene="yleA" /locus_tag="SF0621" /db_xref="GeneID:1023582" CDS 656764..658188 /gene="yleA" /locus_tag="SF0621" /note="Code: J; COG: COG0621" /codon_start=1 /transl_table=11 /product="(dimethylallyl)adenosine tRNA methylthiotransferase" /protein_id="NP_706551.1" /db_xref="GeneID:1023582" /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL LLNTCSIREKAQEKVFHQLGRWKLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGSF ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRILNL MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTEDFEKTMKLIADVNFDMSY SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT SRKSIMELSGRTENNRVVNFEGTPDMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRM AETPESVIARTRKENDLGVGYYQP" misc_feature 656773..658083 /gene="yleA" /locus_tag="SF0621" /note="tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; Region: miaB-methiolase; TIGR01574" /db_xref="CDD:273700" gene 658302..659381 /gene="ybeZ" /locus_tag="SF0622" /db_xref="GeneID:1023553" CDS 658302..659381 /gene="ybeZ" /locus_tag="SF0622" /note="Code: T; COG: COG1702" /codon_start=1 /transl_table=11 /product="pho regulon ATP-binding protein" /protein_id="NP_706552.2" /db_xref="GeneID:1023553" /translation="MFSFRRHTDKRNGLNIDTREITLEPADNARLLSLCGPFDDNIKQ LERRLGIEINRRDNHFKLTGRPICVTAAADILRSLYVDTAPMRGQIQDIEPEQIHLAI KEARVLEQSAESVPEYGKAVNIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTG KTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFE MLGFEKVEKLIERNVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNS KAVITGDVTQIDLPRNTKSGLRHAIEVLADVEEISFNFFHSEDVVRHPVVARIVNAYE AWEEAEQKRKAALAAERKREEQEQK" misc_feature 658350..659336 /gene="ybeZ" /locus_tag="SF0622" /note="Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702" /db_xref="CDD:441308" gene 659378..659845 /gene="ybeY" /locus_tag="SF0623" /db_xref="GeneID:1023572" CDS 659378..659845 /gene="ybeY" /locus_tag="SF0623" /note="Code: R; COG: COG0319" /codon_start=1 /transl_table=11 /product="metal-binding heat shock protein" /protein_id="NP_706553.1" /db_xref="GeneID:1023572" /translation="MSQVILDLQLACEDNSGLPEESQFQTWLNAVIPQFQEESEVTIR VVDTAESHSLNLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGK PLEAHWAHMVVHGSLHLLGYDHIEDDEAEEMEALETEIMLALGYEDPYIAEKE" misc_feature 659393..659821 /gene="ybeY" /locus_tag="SF0623" /note="ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and biogenesis]; Region: YbeY; COG0319" /db_xref="CDD:440088" gene 659935..660813 /gene="ybeX" /locus_tag="SF0624" /db_xref="GeneID:1027544" CDS 659935..660813 /gene="ybeX" /locus_tag="SF0624" /note="Code: R; COG: COG1253" /codon_start=1 /transl_table=11 /product="magnesium/cobalt efflux protein CorC" /protein_id="NP_706554.1" /db_xref="GeneID:1027544" /translation="MSDDNSHSSDTISNKKGFFSLLLSQLFHGEPKNRDELLALIRDS GQNDLIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRQAVVVPESKRVDRMLKEFRS QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTVRALA SIEDFNEAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ VHVKIPDDSPQPKLDE" misc_feature 659935..660810 /gene="ybeX" /locus_tag="SF0624" /note="magnesium/cobalt transporter CorC; Region: PRK15094" /db_xref="CDD:185050" gene 660838..662376 /gene="lnt" /locus_tag="SF0625" /db_xref="GeneID:1023577" CDS 660838..662376 /gene="lnt" /locus_tag="SF0625" /note="Code: M; COG: COG0815" /codon_start=1 /transl_table=11 /product="apolipoprotein N-acyltransferase" /protein_id="NP_706555.1" /db_xref="GeneID:1023577" /translation="MDFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGL QALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLS LYTGLFAGVLSRLWPKTTWLRVAIATPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPL KGLAPLMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQP EKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEIN QQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYN KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIIL AEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITA VIGPQGEIQAMIPQFAREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLR QRRK" misc_feature 660862..662373 /gene="lnt" /locus_tag="SF0625" /note="apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302" /db_xref="CDD:234721" gene 662773..663681 /gene="ybeJ" /locus_tag="SF0626" /db_xref="GeneID:1023607" CDS 662773..663681 /gene="ybeJ" /locus_tag="SF0626" /note="Code: E; COG: COG0834" /codon_start=1 /transl_table=11 /product="glutamate and aspartate transporter subunit" /protein_id="NP_706556.2" /db_xref="GeneID:1023607" /translation="MQLRKPATAILALALSAGLAQADDAAPAAGSTLDKIAKNGVIVV GHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPLL QNGTFDFECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGGDIKDFADLKGKAVVVTS GTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKK PDNWDIVGKPQSQEAYGCMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIPP KNLNMNFELSDEMKALFKEPNDKALN" misc_feature 662773..663678 /gene="ybeJ" /locus_tag="SF0626" /note="glutamate and aspartate transporter subunit; Provisional; Region: PRK10797" /db_xref="CDD:236763" gene 663851..664591 /gene="gltJ" /locus_tag="SF0627" /db_xref="GeneID:1023624" CDS 663851..664591 /gene="gltJ" /locus_tag="SF0627" /note="Code: E; COG: COG0765" /codon_start=1 /transl_table=11 /product="glutamate/aspartate transport system permease" /protein_id="NP_706557.1" /db_xref="GeneID:1023624" /translation="MSIDWNWGIFLQQAPFGNTTYLGWVWSGFQVTIALSICAWIIAF LVGSFFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVIPELLPEKIGMWFKA ELDPNIQFFLSSMLCLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQTYRYVL LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA YVLINAFIMLVMTLVERKVRLPGNMGGK" misc_feature 663860..664570 /gene="gltJ" /locus_tag="SF0627" /note="ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Region: HisM; COG0765" /db_xref="CDD:440528" gene 664591..665265 /gene="gltK" /locus_tag="SF0628" /db_xref="GeneID:1026097" CDS 664591..665265 /gene="gltK" /locus_tag="SF0628" /note="Code: E; COG: COG0765" /codon_start=1 /transl_table=11 /product="glutamate/aspartate transport system permease GltK" /protein_id="NP_706558.1" /db_xref="GeneID:1026097" /translation="MYEFDWSSIVPSLPYLLDGLVITLKITVTAVVIGILWGTMLAVM RLSSFAPVSWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKNDIRLISAMV AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGFVYFVISLSASLLVSY LKRRTA" misc_feature 664591..665262 /gene="gltK" /locus_tag="SF0628" /note="glutamate/aspartate ABC transporter permease GltK; Region: PRK15107" /db_xref="CDD:185062" gene 665265..665990 /gene="gltL" /locus_tag="SF0629" /db_xref="GeneID:1023629" CDS 665265..665990 /gene="gltL" /locus_tag="SF0629" /note="Code: E; COG: COG1126" /codon_start=1 /transl_table=11 /product="glutamate/aspartate ABC transporter ATP-binding protein" /protein_id="NP_706559.1" /db_xref="GeneID:1023629" /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI KTVNGLEPVQQGEITVDGIVVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ VKVLKRDKAPAREKALKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMAPIAMLF DEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDS PKDAFFDDPKSDRAKDFLAKILH" misc_feature 665265..665981 /gene="gltL" /locus_tag="SF0629" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:440743" gene 666108..667043 /gene="rihA" /locus_tag="SF0630" /db_xref="GeneID:1023592" CDS 666108..667043 /gene="rihA" /locus_tag="SF0630" /note="Code: F; COG: COG1957" /codon_start=1 /transl_table=11 /product="ribonucleoside hydrolase 1" /protein_id="NP_706560.2" /db_xref="GeneID:1023592" /translation="MALPILLDCDPGHDDAIAIVLALASPELDVKAITSSAGNQTPEK TLRNVLRMLTLLNRTDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPTFAPQNC TAVELMAKTLRESAEPVTIVSTGPQTNVALLLNSHPELHSKIARIVIMGGAMGLGNWT PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHVEDTERFRAIGNPVSTIVAE LLDFFLEYHKDEKWGFVGAPLHDPCTIAWLLKPELFTTVERWVGVETQGKYTQGMTVV DYYYLTGNKPNATVIVDVDRQGFVDLLADRLKFYA" misc_feature 666108..667040 /gene="rihA" /locus_tag="SF0630" /note="ribonucleoside hydrolase 1; Provisional; Region: rihA; PRK10443" /db_xref="CDD:182465" misc_feature order(666135..666137,666147..666152,666222..666224, 666348..666350,666477..666479,666579..666581, 666597..666599,666603..666605,666828..666830) /gene="rihA" /locus_tag="SF0630" /note="active site" /db_xref="CDD:239117" misc_feature order(666318..666320,666510..666512,666633..666635, 666897..666899,666903..666908,666915..666917) /gene="rihA" /locus_tag="SF0630" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:239117" gene 667127..668789 /gene="ybeW" /locus_tag="SF0631" /pseudo /db_xref="GeneID:1023579" misc_feature 667127..668789 /gene="ybeW" /locus_tag="SF0631" /note="Similar to Escherichia coli K12 dnaK protein gi: 1786870 (557 aa). BLAST with identity of 98% in 554 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(668857..670308) /gene="ybeV" /locus_tag="SF0632" /db_xref="GeneID:1023578" CDS complement(668857..670308) /gene="ybeV" /locus_tag="SF0632" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706561.1" /db_xref="GeneID:1023578" /translation="MKTCWQILEIESTTQIDIIRQAYLARLPLCHPETDPQGFKALRQ AYEEALRLAVNPVEEADDEEKDATAEHEILRAFRTLLDSESDRFQPSAWQKFIQQLNT WNMEDVDQLRWPLCAIAIEARYLSLNCASLLAERLNWHSFNDSEGMDEEEREAFLEAI QAGDCFDFLSLLEYPVALQNQTVEYYFALERCCRYHPDYVTAFLAMEGPWFIPDDAKL HRKLLRWYSSVQTGMVELIPVAKQWQAEEPESEDARYYQCAQRLYCGEGESLLADLGA YWESYPSTQADNLLLQWSKRHCPDYFALLVMVIEARSMVDAQGQPLKYVPGESARTRL LWAEILHSGKLSPLGQSFIESLFFKRKAWAWWKSRVGSETEEDSPLLDLYRVAEQVVL EAFPKQEMLARLNTRLEGGDAHPLEAIITRMLLTKVKLEPEDEDVDEPTPENHEEKND EGEKPQSITSIIKISLTVLVIGYALGKIAMLFS" misc_feature complement(<670156..670308) /gene="ybeV" /locus_tag="SF0632" /note="Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]; Region: CbpA; COG2214" /db_xref="CDD:441816" gene complement(670305..671012) /gene="ybeU" /locus_tag="SF0633" /db_xref="GeneID:1023591" CDS complement(670305..671012) /gene="ybeU" /locus_tag="SF0633" /codon_start=1 /transl_table=11 /product="tRNA ligase" /protein_id="NP_706562.1" /db_xref="GeneID:1023591" /translation="MNKEEQYLLFALSAPMEILNQSCKPAHDSPKMYTGIKEFDLSSS WGINNRDDLIQTIYQMTDDGHANDLAGLYLTWQRSSPEEWKALIAGGSERGLIYTQFV AQTAMCCGEGGIKAWDYVRMGFLSRAGVLNNWLTEEESLWLQSRVYARAHHYYHSWMH YFSAYSLGRLYWQSSQCEDNASLREALTLYKYDSAGSRMFEELAAGSDRFYATLPWQP LTVQPECPVTLKDVSDL" misc_feature complement(670365..670895) /gene="ybeU" /locus_tag="SF0633" /note="Protein of unknown function (DUF1266); Region: DUF1266; pfam06889" /db_xref="CDD:462031" gene 671114..671668 /gene="ybeT" /locus_tag="SF0634" /db_xref="GeneID:1023621" CDS 671114..671668 /gene="ybeT" /locus_tag="SF0634" /note="Code: R; COG: COG0790" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706563.1" /db_xref="GeneID:1023621" /translation="MNKKLMYIFAIFIVAAITCISQPKKTMLRDKAMVNYAFDYLRSP GSLPLTTAATELSAIHGHSTSQYRLGEFYLHGSDGKPLDYTQARYWYEQSAEQENPRA QSKLGWIYLKGLGVKPDTRKAILWYKEAAEQGYAHAQYTLGLIYRNGTGINVNHYESQ KWLKLAAKQHYKNAERLLAGLPAH" misc_feature <671204..671656 /gene="ybeT" /locus_tag="SF0634" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature 671360..671449 /gene="ybeT" /locus_tag="SF0634" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 671468..671557 /gene="ybeT" /locus_tag="SF0634" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" gene complement(671678..673105) /gene="ybeS" /locus_tag="SF0635" /db_xref="GeneID:1023604" CDS complement(671678..673105) /gene="ybeS" /locus_tag="SF0635" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706564.1" /db_xref="GeneID:1023604" /translation="MKNCWKILDIEETTDVDIIRRAYLALLPSFHPETDPQGFKQLRQ AYEEALRIAQSPAKSVWQPEEYEVAEHEILLAFRALLASDSERFLPSAWQRFIQQLNY CSMEEIDELRWSLCTIAMNTAHLSFECVVLLAERLRWLQEENVGEIDEEELESFLYAI AKGNVFNFQTILHLPVAVQNDTIDFYQMFARIWSSHPEWLTLYLAQHRAVIIPDDAKL HRNLLRWYSASRLGIPELLDYARSWREAEPDNEDARYYEYAQRVYCGEGESLLAELCY YWREYPSTQADALMLQWCRQHRVYYYPLVVMMIEARDLVNDQGKPLLYVPGDSARTRF HLYEILSDEKLSALGRSLVEMVLHKGRKPRISLTRDTEHPLWPLYLVAKQLVQASQPT EESLMPIVSRLDAEDRCPLEALIIRRLLIQAANFTGQETVEPEPQPQPMPVDDGGLGC LGVIKIIFYIFIFAGLIGKILHLFG" misc_feature complement(672965..673102) /gene="ybeS" /locus_tag="SF0635" /note="DnaJ molecular chaperone homology domain; Region: DnaJ; smart00271" /db_xref="CDD:197617" misc_feature complement(order(672974..672979,672986..672991, 672998..673000,673010..673015)) /gene="ybeS" /locus_tag="SF0635" /note="HSP70 interaction site [polypeptide binding]; other site" /db_xref="CDD:99751" gene complement(673102..673809) /gene="ybeR" /locus_tag="SF0636" /db_xref="GeneID:1023625" CDS complement(673102..673809) /gene="ybeR" /locus_tag="SF0636" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706565.1" /db_xref="GeneID:1023625" /translation="MDMGSQKILFALSTPMEIRNECCLPSHSSPKMYLGTCFFDLSSS WGIDDRDDLLRIIHRMIENGHADRLAGFYHRWFRYSPCEWRDYLAELNEQGQAYAQFV ASTAECCGEGGIKAWDYVRMGFLSRMGVLNNWLSEEESLWIQSRIHLRALRYYSNWRQ YFAGYTFGRQYWQSPEDDHLPLLREFLARKEYDDSGNDMFYQLFASDDAYYPTLSWQP LADYPTCPETLKDMSDL" misc_feature complement(673162..673692) /gene="ybeR" /locus_tag="SF0636" /note="Protein of unknown function (DUF1266); Region: DUF1266; pfam06889" /db_xref="CDD:462031" gene 673967..674950 /gene="ybeQ" /locus_tag="SF0637" /db_xref="GeneID:1023616" CDS 673967..674950 /gene="ybeQ" /locus_tag="SF0637" /note="Code: R; COG: COG0790" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706566.1" /db_xref="GeneID:1023616" /translation="MIMIFTSSCCDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAID SPDDEKAFYWLKLAAEQGHCEAQYSLGQKYTEDKSRHKDNEQAIFWLKKAALQGHTFA SNALGWILDRGEDPNYKEAVTWYQIAAESGMSYAQNNLGWMYRNGNGVAQDYTLAFFW YKQAALQGHSYAQDNLADLYKDGEGVAQNKTLAAFWYLKSAQQGNRHAQFQIAWDYNA GEGVDQDYKQAMYWYLKAAAQESVGAYVNIGYMYKHGQGVEKDYQAAFEWFTKAAECN DATAWYNLAIMYHYGEGRPVDLRQALDLYRKVQSSGTRDVSQEIRETEALL" misc_feature 674048..674155 /gene="ybeQ" /locus_tag="SF0637" /note="Sel1-like repeats; Region: SEL1; smart00671" /db_xref="CDD:214772" misc_feature 674105..674194 /gene="ybeQ" /locus_tag="SF0637" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 674159..674263 /gene="ybeQ" /locus_tag="SF0637" /note="Sel1-like repeats; Region: SEL1; smart00671" /db_xref="CDD:214772" misc_feature 674213..674302 /gene="ybeQ" /locus_tag="SF0637" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 674219..674887 /gene="ybeQ" /locus_tag="SF0637" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature 674315..674404 /gene="ybeQ" /locus_tag="SF0637" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 674423..674512 /gene="ybeQ" /locus_tag="SF0637" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 674531..674620 /gene="ybeQ" /locus_tag="SF0637" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" gene complement(675020..675502) /gene="ybeL" /locus_tag="SF0638" /db_xref="GeneID:1023611" CDS complement(675020..675502) /gene="ybeL" /locus_tag="SF0638" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706567.1" /db_xref="GeneID:1023611" /translation="MNKVAQYYRELVASLNERLRNGERDIDALVEQARERVIKTGELT RTEIDELTRAVRRDLEEFAMSYEESLKEESDSVFMRVIKESLWQELADITDKTQLEWR EIFQDLNHHGVYHSGEVVGLGNLVCEKCHFHLPIYTPEVLTLCPKCGYDQFQRRPFEP " misc_feature complement(675023..675502) /gene="ybeL" /locus_tag="SF0638" /note="zinc ribbon-containing protein; Region: PRK11032" /db_xref="CDD:182915" gene 675737..678319 /gene="leuS" /locus_tag="SF0639" /db_xref="GeneID:1023618" CDS 675737..678319 /gene="leuS" /locus_tag="SF0639" /note="Code: J; COG: COG0495" /codon_start=1 /transl_table=11 /product="leucyl-tRNA synthetase" /protein_id="NP_706568.2" /db_xref="GeneID:1023618" /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP SGRLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY DNIAYMKNQLKMLGFGYDWSRELATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLNDLDKLDHWPDTVKT MQRNWIGRSEGVEITFNVNDYDNTLTVYTTRPDTFMGCTYLAVAAGHPLAQKAAENNP ELAAFIDECRNTKVAEAEMATMEKKGVDTGFKAVHPLTGEEIPVWAANFVLMEYGTGA VMAVPGHDQRDYEFASKYGLNIKPVILAADGSEPDLSQQALTEKGVLFNSGEFNGLDH EAAFNAIADKLTAMGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVMPTPDDQL PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPEY KEGMLDSEAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVNSDEPAKQLLCQ GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFLKRVWKLVYEHTA KGDVAALNVDALTEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP TDGEQDRALMQEALQAVVRMLNPFTPHICFTLWQELKGEGDIDNAPWPVADEKAMVED STLVVVQVNGKVRAKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN LVVG" misc_feature 675737..678316 /gene="leuS" /locus_tag="SF0639" /note="Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: LeuS; COG0495" /db_xref="CDD:440261" gene 678334..678915 /gene="rlpB" /locus_tag="SF0640" /db_xref="GeneID:1023631" CDS 678334..678915 /gene="rlpB" /locus_tag="SF0640" /note="Code: M; COG: COG2980" /codon_start=1 /transl_table=11 /product="LPS-assembly lipoprotein RlpB" /protein_id="NP_706569.1" /db_xref="GeneID:1023631" /translation="MRYLATLLLSLAVLITAGCGWHLRDTTQVPSTMKVMILDSGDPN GPLSRAVRNQLRLNGVELLDKETTRKDVPSLRLGKVSIAKDTASVFRNGQTAEYQMIM TVNATVLIPGRDIYPISAKVFRSFFDNPQMALAKDNEQDMIVKEMYDRAAEQLIRKLP SIRAADIRSDEEQTSTTTDTPATPARVSTMLGN" misc_feature 678334..678900 /gene="rlpB" /locus_tag="SF0640" /note="LPS-assembly lipoprotein RlpB; Provisional; Region: PRK10796" /db_xref="CDD:236762" gene 678915..679946 /gene="holA" /locus_tag="SF0641" /db_xref="GeneID:1023606" CDS 678915..679946 /gene="holA" /locus_tag="SF0641" /note="Code: L; COG: COG1466" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit delta" /protein_id="NP_706570.1" /db_xref="GeneID:1023606" /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAA QGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAVRAKQLNL ELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV DALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH RVWQNRRGMMGEALNRLSQPQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK PLADVFIDG" misc_feature 679008..679910 /gene="holA" /locus_tag="SF0641" /note="DNA polymerase III, delta subunit; Region: holA; TIGR01128" /db_xref="CDD:273455" gene 679948..680589 /gene="nadD" /locus_tag="SF0642" /db_xref="GeneID:1027549" CDS 679948..680589 /gene="nadD" /locus_tag="SF0642" /note="Code: H; COG: COG1057" /codon_start=1 /transl_table=11 /product="nicotinic acid mononucleotide adenylyltransferase" /protein_id="NP_706571.1" /db_xref="GeneID:1027549" /translation="MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPP HRPQPEANSVQRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPL AFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPED LHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLYR" misc_feature 679948..680586 /gene="nadD" /locus_tag="SF0642" /note="nicotinate-nucleotide adenylyltransferase; Region: nadD; PRK00071" /db_xref="CDD:234611" misc_feature order(679969..679983,679993..679995,679999..680004, 680011..680013,680074..680076,680194..680202, 680257..680259,680263..680268,680272..680277, 680296..680301,680344..680349,680482..680484) /gene="nadD" /locus_tag="SF0642" /note="active site" /db_xref="CDD:185680" misc_feature 679993..680004 /gene="nadD" /locus_tag="SF0642" /note="(T/H)XGH motif; other site" /db_xref="CDD:185680" gene 680613..681224 /gene="phpB" /locus_tag="SF0643" /db_xref="GeneID:1023628" CDS 680613..681224 /gene="phpB" /locus_tag="SF0643" /note="'Code: G; COG: COG0406; similar to Salmonella cobC, a phosphohistidine protein'" /codon_start=1 /transl_table=11 /product="alpha-ribazole-5'-phosphate phosphatase" /protein_id="NP_706572.2" /db_xref="GeneID:1023628" /translation="MRLWLIRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLDD VSFDLVLCSELERAQHTARLVLSDRQLPVHIIPELNEMFFGDWEMRHHRDLMQEDAEN YSAWCNDWQHAIPTNGEGFQAFSQRVERFIARLSEYQHYQNILIVSHQGVLSLLIARL IGMPAESMWHFRVDQGCWSAIDINQKFATLRVLNSRAIGVENA" misc_feature 680613..681206 /gene="phpB" /locus_tag="SF0643" /note="adenosylcobalamin/alpha-ribazole phosphatase; Region: PRK15004" /db_xref="CDD:184966" misc_feature order(680631..680636,680781..680783,681057..681062) /gene="phpB" /locus_tag="SF0643" /note="catalytic core [active]" /db_xref="CDD:132718" gene 681484..681801 /gene="ybeB" /locus_tag="SF0644" /db_xref="GeneID:1026104" CDS 681484..681801 /gene="ybeB" /locus_tag="SF0644" /note="Code: S; COG: COG0799" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706573.2" /db_xref="GeneID:1026104" /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS SRHVMSIADHVVQESRAAGLLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEK LWS" misc_feature 681484..681798 /gene="ybeB" /locus_tag="SF0644" /note="ribosome silencing factor; Region: PRK11538" /db_xref="CDD:183184" gene 681805..682272 /gene="ybeA" /locus_tag="SF0645" /db_xref="GeneID:1023615" CDS 681805..682272 /gene="ybeA" /locus_tag="SF0645" /note="Code: S; COG: COG1576" /codon_start=1 /transl_table=11 /product="23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH" /protein_id="NP_706574.1" /db_xref="GeneID:1023615" /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLAAELERWKLDGRDVSLLI GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE" misc_feature 681808..682266 /gene="ybeA" /locus_tag="SF0645" /note="rRNA large subunit m3Psi methyltransferase RlmH; Region: tRNA_RlmH_YbeA; TIGR00246" /db_xref="CDD:129349" misc_feature order(681844..681852,681856..681861,681868..681873, 682036..682047,682162..682164,682168..682188, 682195..682197,682204..682209,682216..682221, 682228..682230) /gene="ybeA" /locus_tag="SF0645" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349954" misc_feature order(682018..682026,682108..682119,682123..682125, 682162..682173,682177..682185,682198..682200) /gene="ybeA" /locus_tag="SF0645" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:349954" gene 682303..684204 /gene="mrdA" /locus_tag="SF0646" /db_xref="GeneID:1023600" CDS 682303..684204 /gene="mrdA" /locus_tag="SF0646" /note="Code: M; COG: COG0768" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 2" /protein_id="NP_706575.1" /db_xref="GeneID:1023600" /translation="MKLQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI VRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL DALRSVVDLTDDDIAAFRKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG YKRRYYPYGSALTHVIGYVSKINDKDVERLNNDGKLANYAATHDIGKLGIERYYEDVL HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVVVT EPRTGGVLALVSTPSYDPNLFVDGISSKDYSALLNDPNTPLVNRATQGVYPPASTVKP YVAVSALSAGVITRNTTLFDPGWWQLPGSEKRYRDWKKWGHGRLNVTRSLEESADTFF YQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP VGIGQGYWTATPIQMSKALMILINDGIVKVPHLLMSTAEDGKQVPWVQPHEPPVGDIH SGYWELAKDGMYGVANRPNGTANKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE RLRDHKLMTAFAPYNNPQVAVAMILENGGAGPAVGTLMRQILDHIMLGDNNTDLPAEN PAVAAAEDH" misc_feature 682303..684198 /gene="mrdA" /locus_tag="SF0646" /note="penicillin-binding protein 2; Provisional; Region: PRK10795" /db_xref="CDD:236761" gene 684207..685319 /gene="mrdB" /locus_tag="SF0647" /db_xref="GeneID:1023601" CDS 684207..685319 /gene="mrdB" /locus_tag="SF0647" /note="Code: D; COG: COG0772" /codon_start=1 /transl_table=11 /product="cell wall shape-determining protein" /protein_id="NP_706576.1" /db_xref="GeneID:1023601" /translation="MTDNPNKKTFWDKVHLDPTMLLILLALLVYSALVIWSASGQDIG MMERKIGQIAMGLVIMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTGIALVLIFMPTLLVAAQPDL GTSILVALSGLFVLFLSGLSWRLIGVAVVLVAAFIPILWFFLMHDYQRQRVMMLLDPE SDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGV PLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV" misc_feature 684207..685316 /gene="mrdB" /locus_tag="SF0647" /note="rod shape-determining protein RodA; Region: PRK10794" /db_xref="CDD:182737" gene 685330..686418 /gene="rlpA" /locus_tag="SF0648" /db_xref="GeneID:1023612" CDS 685330..686418 /gene="rlpA" /locus_tag="SF0648" /note="Code: M; COG: COG0797" /codon_start=1 /transl_table=11 /product="rare lipoprotein A" /protein_id="NP_706577.1" /db_xref="GeneID:1023612" /translation="MRKQWLGICIAAGMLAACTSDDGQQQTVSVPQPAVCNGPIVEIS GADPRFEPLNATANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEAFD PTKLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGNDRVISLSRAAADRLNTSN NTKVRIDPIIVAQDGSLSGPGMACTTVAKQTYALPAPPDLSGGAGTSSVSGPQGDILP VSNSTLKSEDPTGAPVTSSGFLGAPTTLAPGVLEGSEPTPAPQPVVTASSTTPATSPA MVTPQAASQSASGNFMVQVGAVSDQARAQQYQQQLGQKFGVPGRVTQNGAVWRIQLGP FASKAEASTLQQRLQTEAQLQSFITTAQ" misc_feature 685330..686415 /gene="rlpA" /locus_tag="SF0648" /note="endolytic peptidoglycan transglycosylase RlpA; Region: PRK10672" /db_xref="CDD:236733" gene 686557..687768 /gene="dacA" /locus_tag="SF0649" /db_xref="GeneID:1023603" CDS 686557..687768 /gene="dacA" /locus_tag="SF0649" /note="Code: M; COG: COG1686" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase subunit A" /protein_id="NP_706578.1" /db_xref="GeneID:1023603" /translation="MNTIFSARIMKRLALTTALCTAFISAAHADDLNIKTMIPGVPQI DAESYILIDYNSGKVLAEQNADVRRDPASLTKMMTSYVIGQAMKAGKFKETDLVTIGN DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYSIYKEKEFT FNGIRQLNRNGLLWDNSLNVDGIKTGHTDKAGYNLVASATEGQMRLISAVMGGRTFKG REAESKKLLTWGFRFFETVNPLKVGKEFASEPVWFSDSDRASLGVDKDVYLTIPRGRM KDLKASYVLNSSELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID YIKLMFHHWFG" misc_feature 686557..687765 /gene="dacA" /locus_tag="SF0649" /note="D-alanyl-D-alanine carboxypeptidase fraction A; Provisional; Region: PRK10793" /db_xref="CDD:182736" gene 687879..688142 /gene="ybeD" /locus_tag="SF0650" /db_xref="GeneID:1023602" CDS 687879..688142 /gene="ybeD" /locus_tag="SF0650" /note="Code: S; COG: COG2921" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706579.1" /db_xref="GeneID:1023602" /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYT PTVKPSSKGNYHSVSITINATHIEQVETLYEELGKIDIVRMVL" misc_feature 687879..688139 /gene="ybeD" /locus_tag="SF0650" /note="hypothetical protein; Provisional; Region: PRK04998" /db_xref="CDD:179912" gene 688309..688884 /gene="lipB" /locus_tag="SF0651" /db_xref="GeneID:1027547" CDS 688309..688884 /gene="lipB" /locus_tag="SF0651" /note="Code: H; COG: COG0321" /codon_start=1 /transl_table=11 /product="lipoate biosynthesis protein LipB" /protein_id="NP_706580.4" /db_xref="GeneID:1027547" /translation="MHEFTDTRDNSTLDEIWLVEHYPVFTQGQAGKAEHILMPGDIPV IQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRELVTLLEQTVVNTLAELGIEAHPRA DAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDLSPFLRINPCGYAGMEMAKISQW KPEATTNNIAPRLLENILALLNNPDFEYITA" misc_feature 688309..688878 /gene="lipB" /locus_tag="SF0651" /note="lipoyl(octanoyl) transferase LipB; Region: PRK14342" /db_xref="CDD:237681" misc_feature order(688453..688455,688459..688470,688474..688476, 688498..688500,688645..688647,688654..688662, 688693..688701) /gene="lipB" /locus_tag="SF0651" /note="active site" /db_xref="CDD:319743" gene 689296..690096 /gene="ybeF" /locus_tag="SF0652" /db_xref="GeneID:1023583" CDS 689296..690096 /gene="ybeF" /locus_tag="SF0652" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator" /protein_id="NP_706581.2" /db_xref="GeneID:1023583" /translation="MLNLTPSAISQSIQKLRVIFPDPLFIRKGQGVTPTAFAMHLHEY ISQGLESILGALDIEGSYDKQRTITIATTPSVGALVLPVIYRAIKTHYPQLLLRNPPI SDAENQLSQFQTDLIIDNMFCTNRTVQHHVLFTDNMVLICRKGNPLLSLEDDRETIDN AAHVLLLPEGQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYN LFSRCWPLEKLPFPSLNEEQIDFSIHYNKFILRDPILHGVIDVIRNAF" misc_feature 689296..690093 /gene="ybeF" /locus_tag="SF0652" /note="DNA-binding transcriptional regulator; Region: PRK11482" /db_xref="CDD:183159" gene 690305..691270 /gene="lipA" /locus_tag="SF0653" /db_xref="GeneID:1023613" CDS 690305..691270 /gene="lipA" /locus_tag="SF0653" /note="Code: H; COG: COG0320" /codon_start=1 /transl_table=11 /product="lipoyl synthase" /protein_id="NP_706582.1" /db_xref="GeneID:1023613" /translation="MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIK LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCD VAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKS PQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL ERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ RYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK" misc_feature 690368..691267 /gene="lipA" /locus_tag="SF0653" /note="Lipoate synthase [Coenzyme transport and metabolism]; Region: LipA; COG0320" /db_xref="CDD:440089" gene complement(691371..691574) /gene="tatE" /locus_tag="SF0654" /db_xref="GeneID:1023610" CDS complement(691371..691574) /gene="tatE" /locus_tag="SF0654" /note="Code: N; COG: COG1826" /codon_start=1 /transl_table=11 /product="twin arginine translocase E" /protein_id="NP_706583.1" /db_xref="GeneID:1023610" /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGAAIKGFKKAMN DDDAAAKKGADVDLQAEKLSHKE" misc_feature complement(691374..691574) /gene="tatE" /locus_tag="SF0654" /note="twin-arginine translocase subunit TatE; Region: tatE; PRK03625" /db_xref="CDD:179612" gene complement(691703..692491) /gene="ybeM" /locus_tag="SF0655" /db_xref="GeneID:1023655" CDS complement(691703..692491) /gene="ybeM" /locus_tag="SF0655" /note="Code: R; COG: COG0388" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="NP_706584.3" /db_xref="GeneID:1023655" /translation="MLVAAGQFAVTSVWEKNAEICASLMAQAAENDVSLFVLPEALLA RDDHDADLSVKSAQLLEGEFLGRLRRESKRNMMTTILTIHLPSTPGRAWNMLVALQAG NIVARYAKLHLYDAFAIQESRHVDAGNEIAPLLEVEGMKVGLMTCYDLRFPELALAQA LQGAEILVLPAAWVRGPLKEHHWSTLLAARALDTTCYMVAAGECGNKNIGQSRIIDPF GVTIAAASEMPALIMAEVTPERVRQVRAQLPILNNRRFAPPQLL" misc_feature complement(691709..692485) /gene="ybeM" /locus_tag="SF0655" /note="deaminated glutathione amidase; Region: de_GSH_amidase; NF033621" /db_xref="CDD:468114" gene 692584..692967 /gene="ccrB" /locus_tag="SF0656" /db_xref="GeneID:1023643" CDS 692584..692967 /gene="ccrB" /locus_tag="SF0656" /note="Code: D; COG: COG0239" /codon_start=1 /transl_table=11 /product="chromosome condensation membrane protein" /protein_id="NP_706585.1" /db_xref="GeneID:1023643" /translation="MLQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLAANLIG AFIIGMGFAWFSRMTNIDPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN VFVNLLGSFAMTALAFWLFSASTVH" misc_feature 692584..692952 /gene="ccrB" /locus_tag="SF0656" /note="fluoride efflux transporter CrcB; Region: PRK14196" /db_xref="CDD:184564" gene complement(693021..693230) /gene="cspE" /locus_tag="SF0657" /db_xref="GeneID:1023640" CDS complement(693021..693230) /gene="cspE" /locus_tag="SF0657" /note="Code: K; COG: COG1278" /codon_start=1 /transl_table=11 /product="cold shock protein CspE" /protein_id="NP_706586.2" /db_xref="GeneID:1023640" /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL AEGQRVEFEITNGAKGPSAANVIAL" misc_feature complement(693024..693230) /gene="cspE" /locus_tag="SF0657" /note="cold shock-like protein CspE; Region: cspE; PRK09507" /db_xref="CDD:169931" misc_feature complement(order(693054..693056,693141..693143, 693174..693176,693201..693203)) /gene="cspE" /locus_tag="SF0657" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature complement(order(693135..693146,693165..693185)) /gene="cspE" /locus_tag="SF0657" /note="RNA-binding motif [active]" /db_xref="CDD:239905" gene complement(693405..693965) /gene="pagP" /locus_tag="SF0658" /db_xref="GeneID:1023639" CDS complement(693405..693965) /gene="pagP" /locus_tag="SF0658" /codon_start=1 /transl_table=11 /product="phospholipid:lipid A palmitoyltransferase" /protein_id="NP_706587.1" /db_xref="GeneID:1023639" /translation="MNVSKYVAIFSFVFIQLISVGKVFANADERMTTFRENIAQTWQQ PEHYDLYIPAITWHARFAYDKEKTDRYNERPWGGGFGLSRWDEKGNWHGLYAMAFKDS WNKWEPIAGYGWESTWRPLADENFHLGLGFTAGVTARDNWNYIPLPVLLPLASVGYGP VTFQMTYIPGTYNNGNVYFAWMRFQF" misc_feature complement(693408..693959) /gene="pagP" /locus_tag="SF0658" /note="lipid IV(A) palmitoyltransferase PagP; Region: pagP; PRK11045" /db_xref="CDD:236829" gene 694554..695939 /gene="dcuC" /locus_tag="SF0659" /db_xref="GeneID:1023658" CDS 694554..695939 /gene="dcuC" /locus_tag="SF0659" /note="Code: C; COG: COG3069" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate transporter DcuC" /protein_id="NP_706588.2" /db_xref="GeneID:1023658" /translation="MLTFIELLIGVVVIVGVARYIIKGYSATGVLFVGGLLLLIISAI MGHKVLPSSQASTGYSATDIVEYVKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMV VKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRG AAAAICASPAAIILAPTSGDVVLAAQASEMSLIDFAFKTTLPISIAAIIGMAIAHFFW QRYLDKKEHISHEMLDVSEITTTAPAFYAILPFTPIIGVLIFDGKWGPQLHIITILVI CMLIASILEFLRSFNTQKVFSGLEVAYRGMADAFANVVMLLVAAGVFAQGLSTIGFIQ SLISIATSFGSASIILMLVLVILTMLAAVTTGSGNAPFYAFVEMIPKLAHSSGINPAY LTIPMLQASNLGRTLSPVSGVVVAVAGMAKISPFEVVKRTSVPVLVGLVIVIVATELM VPGTAAAVTGK" misc_feature 694554..695918 /gene="dcuC" /locus_tag="SF0659" /note="C4-dicarboxylate transporter DcuC; Provisional; Region: dcuC; PRK10654" /db_xref="CDD:182621" gene complement(695980..696321) /gene="citB" /locus_tag="SF0660" /pseudo /db_xref="GeneID:1023619" misc_feature complement(695980..696321) /gene="citB" /locus_tag="SF0660" /note="Similar to Escherichia coli K12 sequence similarity to Shigella regulator gi: 1786838 (227 aa). BLAST with identity of 98% in 113 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(696659..697168) /locus_tag="SF0661" /db_xref="GeneID:1023620" CDS complement(696659..697168) /locus_tag="SF0661" /codon_start=1 /transl_table=11 /product="repressor protein" /protein_id="NP_706589.1" /db_xref="GeneID:1023620" /translation="MKSANEINQWMTPKQITELDGMPGTIQGVHKRAKKEGWPKRSQE GRRGPGVEYIPAIPAMQKIAIEEMNADTLKMFSLLINKLGENEVREIELNMAKYGLSG LMQERPSISVDTLLATLGIDRQTLQTALALHKLPPETRQEILSMYGVHKQEEPVAPLL EPQDAKKAV" misc_feature complement(696755..697120) /locus_tag="SF0661" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:470628" gene 697731..699185 /locus_tag="SF0662" /db_xref="GeneID:1026112" CDS 697731..699185 /locus_tag="SF0662" /note="Code: L; COG: COG1425" /codon_start=1 /transl_table=11 /product="phage transposase" /protein_id="NP_706590.2" /db_xref="GeneID:1026112" /translation="MLQQGKFKTSQGCFEIARPTLEAHDYDREALWSKWDKASDSQRS LAEKWLPSIQATDEMLNQGISTKTAFATVAGHYQVSASTLRDKYYQVQKFAKPDWAAA LVDGRGASRRNVHKSEFDEDAWQFLIADYLRPEKPAFRKCYERLELAAREHGWSIPSR ATAFRRIQQLDEAMVVACREGEHALMHLIPAQQRTVEHLDAMQWINGDGYLHNVFVRW FNGDVIRPKTWFWQDVKTRKILGWRCDVSENIDSIRLSFMDVVTRYSIPEDFHITIDN TRGAANKWLTGGAPNRYRFKVKEDDPKGLFLLMGAKMHWTSVVAGKGWGQAKPVERAF GVGGLEEYVDKHPALAGAYTGPNPQAKPDNYGDHAVDAELFLKTFAEGVAMFNARTGR ETEMCGGKLSFDDVFEREYARTIVRKPTEEQKRMLLLPAEAVNVSRKGEFTLKVGGSL KGAKNVYYNMALMNAGVKKVVVRFDPQQLHSTVY" misc_feature <697731..697976 /locus_tag="SF0662" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:470628" misc_feature 697992..698315 /locus_tag="SF0662" /note="Mu DNA binding, I gamma subdomain; Region: HTH_Tnp_Mu_2; pfam09039" /db_xref="CDD:370256" misc_feature 698316..698966 /locus_tag="SF0662" /note="DDE superfamily endonuclease; Region: DDE_3; cl46863" /db_xref="CDD:481203" misc_feature 699003..699182 /locus_tag="SF0662" /note="Mu transposase, C-terminal; Region: Mu-transpos_C; pfam09299" /db_xref="CDD:430512" mobile_element 699183..700446 /mobile_element_type="insertion sequence:IS600" gene 699247..699549 /locus_tag="SF0663" /db_xref="GeneID:1023651" CDS 699247..699549 /locus_tag="SF0663" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706591.1" /db_xref="GeneID:1023651" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 699247..699519 /locus_tag="SF0663" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 699585..700403 /locus_tag="SF0664" /db_xref="GeneID:1023649" CDS 699585..700403 /locus_tag="SF0664" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706592.1" /db_xref="GeneID:1023649" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <699585..700376 /locus_tag="SF0664" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 700415..700690 /locus_tag="SF0665" /db_xref="GeneID:1023644" CDS 700415..700690 /locus_tag="SF0665" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706593.1" /db_xref="GeneID:1023644" /translation="MVVSAIASTPQFFGIFYLVTRVCGFANGYFRVRTSEPVRGNVFL HNMTAFNKLAPRTVGKREHKRGMYVYYCIIFCHRVILNGPARGPCGC" gene complement(700687..701628) /locus_tag="SF0666" /db_xref="GeneID:1023638" CDS complement(700687..701628) /locus_tag="SF0666" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706594.1" /db_xref="GeneID:1023638" /translation="MITFDQATVDSSGAFLIGELERLDQTLNLPLVGYTWSRDIQLRE DASIADDISSWTNTSFAAAGTGANPNGKNWVGKDSTAIAGVNVDIGKSGNPLNLWGME LGWTVIELQAAQQVGRPIDTQKYDGMQLKWQMDNDEQVYVGDSALNLKGLVTLDGVPV NNAAKTWATSTPDEIRASINQVLSDAWAASGYSVVPRDLLIPPEQFALLSSIIVSSAG NQSLLTNLQTNTISYHQNGVPLNIRAVKWLKGRGVGNKDRIVAYTNDKKYVRYPLVPL QSVPVQYRGLYQIVTYYGKLGAVEPVYKETISYVDGI" misc_feature complement(700690..701412) /locus_tag="SF0666" /note="Uncharacterized protein conserved in bacteria (DUF2184); Region: DUF2184; pfam09950" /db_xref="CDD:462931" gene complement(701640..702129) /locus_tag="SF0667" /pseudogene="unknown" /db_xref="GeneID:1023652" gene complement(702133..703353) /locus_tag="SF0668" /db_xref="GeneID:1023642" CDS complement(702133..703353) /locus_tag="SF0668" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706596.1" /db_xref="GeneID:1023642" /translation="MKYFFETRLGETRYRLADGSLLCKDVPIGRTGKQLYGADDLPKL KPDKFVEIVVTRSPEQVFHPATLASFEGMSITILHPEDENGNVRLVNPENWKVLAVGH LQNVRRGTGEQSDLMLADLIVKDESAIQLIEDGLREVSCGYDAEYEQTEPGKAEQVDI TGNHVALVPKGRAGNRCAIGDRDTMANQKKNWWNRMRAAIKTGDADTMNELVESAPAS VTGDEGDLPQGVNLNINLSPQQPLPDKAPEMGGDPTGDSDDDLKTLLKALLAKLERNA TGDNDNKPDDNPTGDGEDDEEETTITGDSAWRAEVIVPGIDLSRKMKPTAFKREVLAS ADKTLVRQIVGDADIRKLPKQSVDMAFNAVSEVAKGRNTRATTGDAQRLNMGMTSIAS LNKQNAEFWANRKG" misc_feature complement(702142..703350) /locus_tag="SF0668" /note="Uncharacterized conserved protein, DUF2213 domain [Function unknown]; Region: COG3566" /db_xref="CDD:442787" gene complement(703357..704100) /locus_tag="SF0669" /db_xref="GeneID:1023645" CDS complement(703357..704100) /locus_tag="SF0669" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706597.3" /db_xref="GeneID:1023645" /translation="MTNRRSRQAEIRYRTSLRRIARAVGDIVNGRYDGSNDSITEIIA ALERYSEIITPWATKVAENFTADLTRQNEKVWRQHSKNISRELRNLVESAPVGQVMQS IIAEQVKYIKSLPLEAADRVYDIQNKAIEAVVTGGRAEQFAKEIASTGDVAKSRADLI ARTELGRATGALDMARAIAIGSDGYIWRTADDGDVRDSHDHMKGKFVRWDSPPTLDGM TGHAGELPNCRCYKEIVFVRVPFAMKRAA" misc_feature complement(703387..703839) /locus_tag="SF0669" /note="Uncharacterized protein, contains phage Mu head morphogenesis gpF-like domain [Mobilome: prophages, transposons]; Region: COG2369" /db_xref="CDD:441936" gene complement(703991..705457) /locus_tag="SF0670" /db_xref="GeneID:1023636" CDS complement(703991..705457) /locus_tag="SF0670" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706598.1" /db_xref="GeneID:1023636" /translation="MARNKQALRRTVQATADGYENFIARVGMQTPNQHSASTYRANFT SRNRMLVEWSYRSSWIIGEAVDAIPDDMTRKGIRITSEIDAKDRGILESQLDELQIWD ALNDVLKWSRLYGGAVGFIMIEGQAPMTPLRPETIGKGKFKGILPLDRWMVDPALTRR IKDMGPDLGKPEFYDVVTTATGIPAWRIHHSRLIRFDGVTLPFQQKMTENEWGMSVVE RIWDRLTAFDSATVGAAQLVYKAHLRTYSVEKLRELIALGGPAYEALLKNIDLIRQFQ SNEGMTLMDSRDKFETHQYSFSGLDDILSQFAEQISGAVGIPLVRLFGQSPKGFSTGD ADLANYYDRISSLQERRLRLPVRRILDIMHRSELGKPLPDDFTFEFNPLWQMSDVDRS TVALNTTNAISTALGDGLMTLKAAMTDLRENSDVTGIGASITNEDIENAEDEAPPGIG EPDDEPQEPSGGNPVSNQPTQDSEGGRRHRKWSLRWFK" misc_feature complement(704075..705457) /locus_tag="SF0670" /note="Uncharacterized conserved protein, DUF1073 domain [Function unknown]; Region: COG3567" /db_xref="CDD:442788" gene complement(705457..706217) /locus_tag="SF0671" /pseudogene="unknown" /db_xref="GeneID:1023633" mobile_element complement(706191..707521) /mobile_element_type="insertion sequence:IS2" gene complement(706202..707107) /locus_tag="SF0672" /db_xref="GeneID:1023635" CDS complement(706202..707107) /locus_tag="SF0672" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_706600.1" /db_xref="GeneID:1023635" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(706205..707107) /locus_tag="SF0672" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(707065..707475) /locus_tag="SF0673" /db_xref="GeneID:1023623" CDS complement(707065..707475) /locus_tag="SF0673" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_706601.3" /db_xref="GeneID:1023623" /translation="MIVLILVFRLVIGVQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMKNELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(707068..707430) /locus_tag="SF0673" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene complement(707506..708129) /locus_tag="SF0674" /db_xref="GeneID:1023634" CDS complement(707506..708129) /locus_tag="SF0674" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706602.2" /db_xref="GeneID:1023634" /translation="MRARNKVLYGGRSSSKSWDAAGIAIFLSNKYTLRFCCARQIQNK IEESVYTLLKIQIDRFGLRHRFRILNNKIINRVTGSEFVFYGLWRNIEEIKSLEGIDM LWLEEAHALTEYQWKILEPTIRKEGSECWFIFNPGLVTDFVWRNFVVDPPEGTLIRKI NYDENPFLSDTMLKVIDAARRRDPDGFKHVYEGVPESDDDAAIRLAP" misc_feature complement(<707551..708123) /locus_tag="SF0674" /note="Phage terminase large subunit [Mobilome: prophages, transposons]; Region: XtmB; COG1783" /db_xref="CDD:441389" gene complement(708140..708904) /locus_tag="SF0675" /db_xref="GeneID:1023622" CDS complement(708140..708904) /locus_tag="SF0675" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706603.1" /db_xref="GeneID:1023622" /translation="MAKPDWEAIESAYRAGVLSLRDIGEKYGVTEGAIRKRAKKLDWA RSGGTQVCKNGTQKRKVRTSRKPAITGLTQKSTQLKTESTPDTKPIRGMRTDPPTNPF QPGNQQALKHGGYARRLLLKDEVIEDAKALTLEDELFRLRANNLVAAENIGRWLVSLE DANGDQERKMLIENISAAEKAMMRNTVRIESIVGTLATVGKIFADTAYRKAATDKVSL EADRLRRDAGIDDGNGERDLNDFYSDIQTDAESGFT" gene 709099..709611 /locus_tag="SF0676" /db_xref="GeneID:1023646" CDS 709099..709611 /locus_tag="SF0676" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706604.1" /db_xref="GeneID:1023646" /translation="MMEWINALMNYFVLHPYRLWGLLFIIAFTKSTLLISAILPPASI MMATVITVSKTTLSPWEAGITVMSGAWCGTIVNYHLGIIIGHIPQLACIISSRSNTIE RVRLQLQNNSVSILFTSRFIAVLRYIAPLVAGMLQLHPVKVYTVSLISAASWSALYVG SFSFVLPFFS" misc_feature 709099..>709578 /locus_tag="SF0676" /note="Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family [Cell wall/membrane/envelope biogenesis]; Region: DedA; COG0586" /db_xref="CDD:440351" mobile_element 709946..711194 /mobile_element_type="insertion sequence:IS911" gene 709982..710320 /locus_tag="SF0677" /db_xref="GeneID:1023637" CDS 709982..710320 /locus_tag="SF0677" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_706605.1" /db_xref="GeneID:1023637" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature 710021..710290 /locus_tag="SF0677" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 710347..711186 /locus_tag="SF0678" /db_xref="GeneID:1023630" CDS 710347..711186 /locus_tag="SF0678" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_706606.1" /db_xref="GeneID:1023630" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature 710368..711177 /locus_tag="SF0678" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene 711215..711637 /locus_tag="SF0679" /db_xref="GeneID:1023653" CDS 711215..711637 /locus_tag="SF0679" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706607.1" /db_xref="GeneID:1023653" /translation="MFNLMLTSKKLTKTAINEALRRMKKAGLNKSELEAFLRDMINGK QKSWLAHCTDAEALCIDRVISEVLAEHPGLISVLRQRYEGRGMTKCKMAELLNDAHPK WSLRTCERRIEHWLKVAEFILYKPMVMAFGIEKKVIAF" misc_feature <711215..711610 /locus_tag="SF0679" /note="Phage antitermination protein Q; Region: Phage_antitermQ; cl29970" /db_xref="CDD:453083" gene 711827..711903 /locus_tag="SF4455" /db_xref="GeneID:3161770" tRNA 711827..711903 /locus_tag="SF4455" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161770" gene 711905..711981 /locus_tag="SF4456" /db_xref="GeneID:3161799" tRNA 711905..711981 /locus_tag="SF4456" /product="tRNA-Arg" /codon_recognized="AGA" /db_xref="GeneID:3161799" gene 711984..712058 /locus_tag="SF4457" /db_xref="GeneID:3161774" tRNA 711984..712058 /locus_tag="SF4457" /product="tRNA-Thr" /codon_recognized="ACA" /db_xref="GeneID:3161774" gene 712062..712136 /locus_tag="SF4458" /db_xref="GeneID:3161779" tRNA 712062..712136 /locus_tag="SF4458" /product="tRNA-Gly" /codon_recognized="GGA" /db_xref="GeneID:3161779" mobile_element complement(712907..714170) /mobile_element_type="insertion sequence:IS600" gene complement(712950..713768) /locus_tag="SF0680" /db_xref="GeneID:1023665" CDS complement(712950..713768) /locus_tag="SF0680" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706608.1" /db_xref="GeneID:1023665" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(712977..>713768) /locus_tag="SF0680" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(713804..714106) /locus_tag="SF0681" /db_xref="GeneID:1023667" CDS complement(713804..714106) /locus_tag="SF0681" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706609.1" /db_xref="GeneID:1023667" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(713834..714106) /locus_tag="SF0681" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 714382..716241 /locus_tag="SF0682" /db_xref="GeneID:1027548" CDS 714382..716241 /locus_tag="SF0682" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706610.1" /db_xref="GeneID:1027548" /translation="MRPSELSDLLWAQVDRVAPHLLPNGKIEGHEWVAGNVNGDKGNS LKVNLIGKKKWADFAEGDGGDMLDLWMACRGINLHQAMQEAKAFLGIKDDDHHFDARR EKKFSRPDRKKIARYVTRTESHLEYLQSRGISPEVVKRYEVVSGKVWNGERELDALVL PYKRDGELLQVKRISTERPDGKKVIMAEGDCEPCLFGWQALDAGVRVVVLCEGEIDCM SYAQYGISALSVPFGGGKGAKQQWIEFEYHNLDRFEEIFISMDVDDVGREAAREIVSR LGEHRCRLVTLPYKDINECLMNGVTEDEIWQYIGTASYFDPEELYSAREFYQDTINAF YGKQQYLFNPPWESLADKFQFREAELTLVNGVHGHGKACPLNEPILLADGTWTTHGNV KIGDQVASVDGNPSTVTGIFPQGVRDVYRVTFEDGRYVDCAGDHLWEVTSRGFTKGEK RRVIDTFGLKRLSETKRHKNGVRIPEITGDFGDHSEPLAWVIGSLLGDGSLSNGSVKF SNVEPYMIERMKAELPDYNFSGDGKDWLISTARGQVNPLMETLRGYGLMGCTAKNKFI PRVFFSANKSTRIGMLCGLLETDGYVEKDGTLVFSSASEELRNEVVNKNWPPS" misc_feature 714394..>715194 /locus_tag="SF0682" /note="hypothetical protein; Validated; Region: PRK07078" /db_xref="CDD:235927" misc_feature 715267..>716202 /locus_tag="SF0682" /note="Intein/homing endonuclease [Replication, recombination and repair, Mobilome: prophages, transposons]; Region: Hop; COG1372" /db_xref="CDD:440983" mobile_element complement(716208..717456) /mobile_element_type="insertion sequence:IS911" gene complement(716216..717055) /locus_tag="SF0683" /db_xref="GeneID:1023663" CDS complement(716216..717055) /locus_tag="SF0683" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_706611.1" /db_xref="GeneID:1023663" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature complement(716225..717034) /locus_tag="SF0683" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(717082..717420) /locus_tag="SF0685" /db_xref="GeneID:1023661" CDS complement(717082..717420) /locus_tag="SF0685" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_706612.1" /db_xref="GeneID:1023661" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature complement(717112..717381) /locus_tag="SF0685" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 717477..718355 /locus_tag="SF0684" /db_xref="GeneID:1023668" CDS 717477..718355 /locus_tag="SF0684" /note="Code: L; COG: COG1484" /codon_start=1 /transl_table=11 /product="replication protein DnaC" /protein_id="NP_706613.2" /db_xref="GeneID:1023668" /translation="MMTFNLREQQKRLQARMDELRAEIAFAQKGEKPWPYRSCLMREG RGYCEKHGEYHTHILVWSDRNGEDREEISCCPDCLIAEANDLTMELSSIKAEELTDNA GIALRFRDCEFDNYLEVNPGAARNLAACRRYAENWPDMLENGTSLVMTGSCGTGKNHL AVAMAKHIIRNYLASVEITDVMRLTRAVKNCWRNDSEKTADEVIERYASMDLLIIDEV GVQFGSAAEMAILQEIINARYESILPTILISNLSPEELWAFISPRIADRITDGGRNWL SFNWPSYRSRIRGVAA" misc_feature 717648..718343 /locus_tag="SF0684" /note="Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a...; Region: P-loop containing Nucleoside Triphosphate Hydrolases; cl38936" /db_xref="CDD:476819" misc_feature 717927..717950 /locus_tag="SF0684" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(717930..717953,718122..718124,718224..718226) /locus_tag="SF0684" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 718110..718127 /locus_tag="SF0684" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 718275..718277 /locus_tag="SF0684" /note="arginine finger; other site" /db_xref="CDD:99707" gene 718352..719743 /locus_tag="SF0686" /db_xref="GeneID:1023673" CDS 718352..719743 /locus_tag="SF0686" /note="Code: L; COG: COG0305" /codon_start=1 /transl_table=11 /product="helicase" /protein_id="NP_706614.1" /db_xref="GeneID:1023673" /translation="MTTPVWRNDDLEGAVIGAFFLRGADPEVMDILATLPADVFSVRA YQDIYTGICRQARVSGVIDPVLLCNEMPELAPVITDTGRKTWVKSSLEHYVAALRRNA ALRDAEKTLNEALQKLRDAHTCEAAEDALKDAQNMMVTLSTGKGVIQPVHIDDVLPEV VERVECRNQGLEKSRTLMTGIDELDAKTGGMEPGDLVFIAARPSMGKTELALDIIDKV TEQGHGVLLFTMEMANIQIGERMVSAAGGMPVSRLKSVAHFEDEDWTRFSQGVGRMTG RNIWMVDQANLAIDEICATTKHHLIKYPETALVVVDYLGLIKTRTTGRHDLAVGEISK GLKGLAKSGGFPLIALSQLSRGVESRPNKRPMNSDLKNSGEIEADADIILMLYRDEVY NPDTQARGIAEINITKQRNGSLGTIYRRFYNGHFLPVDQESARVLSTPMKPGNPRRYS NKRTDSSKMERFF" misc_feature 718373..719629 /locus_tag="SF0686" /note="Replicative DNA helicase [Replication, recombination and repair]; Region: DnaB; COG0305" /db_xref="CDD:440074" gene 719740..719997 /locus_tag="SF0687" /db_xref="GeneID:1023671" CDS 719740..719997 /locus_tag="SF0687" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706615.1" /db_xref="GeneID:1023671" /translation="MNNQTMTFTPEQLRKHAQEMLRHAEQLEKTGITKDAIRKDMVPA LRELMQAKHRAQKAVDELVDCVAELETRVGKFEKLVQEALR" gene 720285..720665 /gene="ybcQ" /locus_tag="SF0688" /db_xref="GeneID:1023664" CDS 720285..720665 /gene="ybcQ" /locus_tag="SF0688" /codon_start=1 /transl_table=11 /product="Q protein" /protein_id="NP_706616.2" /db_xref="GeneID:1023664" /translation="MRDIQQVLERWGAWVANNHEDVTWSSIAAGFKGLIPSKVKSRPQ CCDDDAMVICGCMARLNRNNNDLHDLLVDYYVFGMTFMTLARKHGCSDGYIGKKLQKA EGVVEGMLMMLGVRLEMDKYIEHP" misc_feature 720285..720638 /gene="ybcQ" /locus_tag="SF0688" /note="Phage antitermination protein Q; Region: Phage_antitermQ; pfam06530" /db_xref="CDD:428991" gene 720865..720941 /locus_tag="SF4459" /db_xref="GeneID:3161854" tRNA 720865..720941 /locus_tag="SF4459" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161854" gene 720943..721019 /locus_tag="SF4460" /db_xref="GeneID:3161846" tRNA 720943..721019 /locus_tag="SF4460" /product="tRNA-Arg" /codon_recognized="AGA" /db_xref="GeneID:3161846" gene 721022..721097 /locus_tag="SF4461" /db_xref="GeneID:3161810" tRNA 721022..721097 /locus_tag="SF4461" /product="tRNA-Thr" /codon_recognized="ACA" /db_xref="GeneID:3161810" gene 721101..721175 /locus_tag="SF4462" /db_xref="GeneID:3161807" tRNA 721101..721175 /locus_tag="SF4462" /product="tRNA-Gly" /codon_recognized="GGA" /db_xref="GeneID:3161807" gene 721468..721683 /locus_tag="SF0689" /db_xref="GeneID:1023660" CDS 721468..721683 /locus_tag="SF0689" /codon_start=1 /transl_table=11 /product="S protein" /protein_id="NP_706617.1" /db_xref="GeneID:1023660" /translation="MKSMDKISTGIAYGTSAGSAGYWFLQWLDQVRPSQWAAIGVLGS LLLGLLTYLTNLYFKIREDKRKAARGE" misc_feature 721480..721671 /locus_tag="SF0689" /note="Bacteriophage P21 holin S; Region: Phage_holin_2_1; pfam04971" /db_xref="CDD:428228" gene 721687..722316 /locus_tag="SF0690" /db_xref="GeneID:1023670" CDS 721687..722316 /locus_tag="SF0690" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706618.1" /db_xref="GeneID:1023670" /translation="MKHEEMNQRFNHLENEITELNKKLSALVSSEDENKRRDEHYAAI YDYCHKVAHETFMKFLQEKFLPAALSEKEAAYLRPEYVITVNSAGEEEHKSDFIASAP DKDQEPHRPFRVSCEEGEFVVYENGKPVRASHHHCLKIINLAIRCLKDENTRVMKRIG RCMGYLQVAAEIEALASGADMDAAVREALLRDFNTPPLRKSLMTGSSRG" gene 722382..722915 /locus_tag="SF0691" /db_xref="GeneID:1023681" CDS 722382..722915 /locus_tag="SF0691" /codon_start=1 /transl_table=11 /product="endolysin R of prophage CP-933V" /protein_id="NP_706619.3" /db_xref="GeneID:1023681" /translation="MSAKIKYGLSAAVLALIAAGASAPQILDQFLNEKEGNHTTAYRD GSGIWTICRGATMVDGKPVIPGMKLSKEKCDQVNAIERDKALAWVERNIKVPLTEPQK AGIASFCPYNIGPGKCFPSTFYKRLNAGDRKGACEAIRWWIKDVGRDCRIRSNNCYGQ VIRRDQESALACWGIDQ" misc_feature 722412..722891 /locus_tag="SF0691" /note="endolysin R21-like proteins; Region: endolysin_R21-like; cd16900" /db_xref="CDD:381619" gene 722912..723316 /locus_tag="SF0692" /db_xref="GeneID:1023683" CDS 722912..723316 /locus_tag="SF0692" /codon_start=1 /transl_table=11 /product="endopeptidase" /protein_id="NP_706620.2" /db_xref="GeneID:1023683" /translation="MSRVTAIISALVICIIVCLSWAVNHYRDNAITYKEQRDKNAGEL KLANATITDMQQRQRDADALDAKYTKELADAKAENDALRRKLDNGGRVLVKGKCPVPS SAETSSASGMGNDATVELSPVAGRNVLGIRDG" misc_feature 722996..723307 /locus_tag="SF0692" /note="Bacteriophage Rz lysis protein; Region: Phage_lysis; pfam03245" /db_xref="CDD:427215" mobile_element 723314..723690 /note="partial" /mobile_element_type="insertion sequence:IS600" gene 723378..723680 /locus_tag="SF0693" /db_xref="GeneID:1023641" CDS 723378..723680 /locus_tag="SF0693" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706621.1" /db_xref="GeneID:1023641" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 723378..723650 /locus_tag="SF0693" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element complement(723689..724119) /note="partial" /mobile_element_type="insertion sequence:IS629" gene complement(723731..724600) /locus_tag="SF0694" /pseudogene="unknown" /db_xref="GeneID:1023650" mobile_element complement(724120..724980) /note="partial" /mobile_element_type="insertion sequence:IS629" gene complement(724600..724926) /locus_tag="SF0696" /db_xref="GeneID:1026125" CDS complement(724600..724926) /locus_tag="SF0696" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_706624.1" /db_xref="GeneID:1026125" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEF DRLWKK" misc_feature complement(724636..724923) /locus_tag="SF0696" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element 724980..725872 /note="partial" /mobile_element_type="insertion sequence:IS600" gene 725011..725829 /locus_tag="SF0697" /db_xref="GeneID:1023648" CDS 725011..725829 /locus_tag="SF0697" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706625.1" /db_xref="GeneID:1023648" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKHKFRATTNSNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <725011..725802 /locus_tag="SF0697" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 725857..726180 /locus_tag="SF0698" /db_xref="GeneID:1023659" CDS 725857..726180 /locus_tag="SF0698" /codon_start=1 /transl_table=11 /product="DNA packaging protein of prophage; terminase small subunit" /protein_id="NP_706626.1" /db_xref="GeneID:1023659" /translation="MPVHLKLLIARWELTAEQAVAQQLKNQVSKGNLIDTGFCIFALS KLAMALSSTLDSIPLSMQRQFPDLTPRHIDHLKILIAKGANQCARAGDKLPDLLDEYI RTTTE" misc_feature <725869..726165 /locus_tag="SF0698" /note="Protein of unknown function (DUF1441); Region: DUF1441; cl46780" /db_xref="CDD:481120" gene 726152..728062 /locus_tag="SF0699" /pseudogene="unknown" /db_xref="GeneID:1023657" gene 728263..729856 /locus_tag="SF0701" /pseudogene="unknown" /db_xref="GeneID:1023678" gene 729846..731351 /locus_tag="SF0703" /db_xref="GeneID:1023685" CDS 729846..731351 /locus_tag="SF0703" /note="Code: NO; COG: COG0616" /codon_start=1 /transl_table=11 /product="head-tail preconnector gp5" /protein_id="NP_706631.1" /db_xref="GeneID:1023685" /translation="MRRNLSHIIAAAFNEPLLLEPAYARVFFCALGREMGAASLSVPQ QQVQLDAPGMLAETDEYMAGGKRPARVYRVVNGIAVLPVTGTLVHRLGGMRPFSGMTG YDGIVACLQQAMADTQVRGVLLDIDSSGGQATGAFDCADMIYRLRQLKPVWALCNDTA CSAAMLLASACSRRLVTQTSRIGSIGVMMGHVSYAGHLAQAGVDITLIYAGSHKVDGN QFESLPAKVRQDMQQRIDAARRMFAEKVAMYTGLSVDAVMGTEAAVFEGQSGIEAELA DELINASDAISVMAATLNTHDTGGTMPQLTATEAAAQENQRVMGILTCQEAKGREQLA TMLAGQQGMSVEQARAILAVAAPQQSGVSAQSEADRIMACEEAKGREQLAATLAAMPE MTVEKARPILAASPQANAGPSLRDQIMALDEAKGAEAQAEKLAACPGMTVENARAVLA AASGRAEPVSASTTAMFEHFMANHSPAAVQGGVPQTSADGDADVKMLMAMP" misc_feature 730074..730715 /locus_tag="SF0703" /note="Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_36K_type; cd07022" /db_xref="CDD:132933" misc_feature order(730095..730097,730218..730220,730329..730331, 730374..730376,730380..730382,730404..730415, 730560..730562,730629..730637,730641..730643, 730650..730652) /locus_tag="SF0703" /note="tandem repeat interface [polypeptide binding]; other site" /db_xref="CDD:132933" misc_feature order(730155..730157,730176..730178,730254..730256, 730452..730454,730458..730472,730554..730556, 730566..730568) /locus_tag="SF0703" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132933" misc_feature 730329..730331 /locus_tag="SF0703" /note="active site residues [active]" /db_xref="CDD:132933" gene 731388..731735 /locus_tag="SF0704" /db_xref="GeneID:1023656" CDS 731388..731735 /locus_tag="SF0704" /codon_start=1 /transl_table=11 /product="capsid protein small subunit" /protein_id="NP_706632.1" /db_xref="GeneID:1023656" /translation="MVTKTITEQRAEVRIFAGNDPAHTATGSSGISSATPALTPLMLD EDTGKLVVWDGQKAGHVVGILVLPLEGTETVLTYYKSGTFATEAIHWPERVDTHKKAN AFAGSALSHAALP" misc_feature 731400..731720 /locus_tag="SF0704" /note="Bacteriophage lambda head decoration protein D; Region: HDPD; pfam02924" /db_xref="CDD:427057" gene 731793..732821 /locus_tag="SF0705" /db_xref="GeneID:1023654" CDS 731793..732821 /locus_tag="SF0705" /codon_start=1 /transl_table=11 /product="major capsid protein" /protein_id="NP_706633.1" /db_xref="GeneID:1023654" /translation="MGLFTTRQLLGYTEQKVKFRALFLELFFRRTVNFHTEEVMLDKI TGKTPVAAYVSPVVEGKVLRHRGGETRVLRPGYVKPKHEFNYQQAVERLPGEDPAQLN GPAYRRLRIITDNLKQEEHAIVQVEEMQAVNAVLYGKYTMEGEQFETVEVDFGRSVGN NITQAGGTEWSAQDRDTFDPTHDLDAYCDFASGTINIAIMDGKVWRLLNGFKLFREKL DTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVAEDGTEKRYLPDGTLVLG NTAAEGIRCYGAIQDAQALSEGVVASSRYPKHWLTVGDPAREFTMTQSAPLMVLPDPD EFVVVQVK" misc_feature 731802..732812 /locus_tag="SF0705" /note="Phage major capsid protein E; Region: Phage_cap_E; pfam03864" /db_xref="CDD:427552" gene 732873..733259 /locus_tag="SF0706" /db_xref="GeneID:1023691" CDS 732873..733259 /locus_tag="SF0706" /codon_start=1 /transl_table=11 /product="DNA-packaging protein" /protein_id="NP_706634.2" /db_xref="GeneID:1023691" /translation="MATKEENLKRLCELAERLGREPDVSGSAADIAQRVAELEEELGD AGEVAEPDTYSPSKDDPTAHKGESVPEQPGIVTGDETGQVTVVALATLHTKCNGSVIF VSPGTSFRVSAEVAASMAAGGLAKRQ" misc_feature 732879..733247 /locus_tag="SF0706" /note="DNA packaging protein FI; Region: Packaging_FI; pfam14000" /db_xref="CDD:290707" gene 733271..733648 /locus_tag="SF0707" /db_xref="GeneID:1026132" CDS 733271..733648 /locus_tag="SF0707" /codon_start=1 /transl_table=11 /product="tail attachment protein" /protein_id="NP_706635.1" /db_xref="GeneID:1026132" /translation="MDGFDNLFDAALAGVNEVILRDMGISAVITSGELEGTHLTGVFD DPESISFVAGGIRLEDSSPCLFVKTADISQLRRQDTLTIGDDSFFVDRITPDDGGCCY IRLRRGSPAPQNNARMRRYDEGT" misc_feature 733271..733621 /locus_tag="SF0707" /note="Phage Head-Tail Attachment; Region: Phage_attach; cl05094" /db_xref="CDD:446606" gene 733635..734219 /locus_tag="SF0708" /db_xref="GeneID:1023693" CDS 733635..734219 /locus_tag="SF0708" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_706636.2" /db_xref="GeneID:1023693" /translation="MKGLENAIRNLNSLDTRMVPQTSAWAVNRVAAKIVSVATRQVAQ NTVAGDNQVKGIPLKTVRERVRLLKASPSGKMYARMRVNRGNLPAIKLGTAQVRLARS RHGSNSRHRGSVLKVGKYLFRDAFIQQLANGRWHVMRRIDGKNRYPIDVVKIPMSGPL TQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK" misc_feature 733635..734216 /locus_tag="SF0708" /note="Prophage minor tail protein Z (GPZ); Region: Minor_tail_Z; pfam06763" /db_xref="CDD:284235" gene 734216..734617 /locus_tag="SF0709" /db_xref="GeneID:1023692" CDS 734216..734617 /locus_tag="SF0709" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_706637.1" /db_xref="GeneID:1023692" /translation="MNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVW LSDAQYTGKMTDEDDWQAVLHIAVFVRAQAPDSELDTWMENTIFPAMKDIPVLSGLID TMIPLGFNYQRDNEMATWAMAEITYQITYTN" misc_feature 734222..734608 /locus_tag="SF0709" /note="Phage minor tail protein U; Region: Phage_tail_U; pfam06141" /db_xref="CDD:399267" gene 734622..735368 /locus_tag="SF0710" /db_xref="GeneID:1023686" CDS 734622..735368 /locus_tag="SF0710" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_706638.1" /db_xref="GeneID:1023686" /translation="MVMTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMV KDLQPGEMTADAEDDTYLDDKDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLF DSGEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTET VGVTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATV KGVKQGSVSIVGMTSDGEFVAVAAVTVSAP" misc_feature 734679..735083 /locus_tag="SF0710" /note="Lambda phage tail tube protein, TTP; Region: Phage_TTP_12; pfam16461" /db_xref="CDD:406780" misc_feature 735111..735332 /locus_tag="SF0710" /note="Bacterial Ig-like domain (group 2); Region: Big_2; cl02708" /db_xref="CDD:445894" gene 735409..735813 /locus_tag="SF0711" /db_xref="GeneID:1027552" CDS 735409..735813 /locus_tag="SF0711" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_706639.1" /db_xref="GeneID:1027552" /translation="MHPENMMFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAK FDAQEGELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDAL GAGAERVLSLSGMGTIENAGDDDHEALTPEKS" misc_feature 735427..735810 /locus_tag="SF0711" /note="Bacteriophage lambda tail assembly chaperone, TAC, protein G; Region: Phage_TAC_2; cl06106" /db_xref="CDD:297413" gene 735822..736151 /locus_tag="SF0712" /db_xref="GeneID:1023682" CDS 735822..736151 /locus_tag="SF0712" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_706640.1" /db_xref="GeneID:1023682" /translation="MQFVMRLAREFRRADWRRMLSDMSATELGEWGDYFRMQSFSDVW MDAQFASLKALIVRMVSGSSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYG PDSQPGH" misc_feature 735837..736139 /locus_tag="SF0712" /note="Minor tail protein T; Region: Phage_tail_T; cl05636" /db_xref="CDD:297128" gene 736123..739164 /locus_tag="SF0713" /db_xref="GeneID:1023689" CDS 736123..739164 /locus_tag="SF0713" /codon_start=1 /transl_table=11 /product="tail length tape measure protein" /protein_id="NP_706641.1" /db_xref="GeneID:1023689" /translation="MDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQ RFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQK MREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQ DYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGV SSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRA GWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEKFNRQLALTGHYAGVTVG QLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDT INQFKRLKDDPVNAAKALDNALHFLNATQLEQIRVLGEQGRSSDAARIAMSALAEETG KRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYP WTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNET EAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYS QQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKN ELIQALTLLDVKQQELQKQTALNDLRKKTVQLTSQLADKERALREQHNLDIATAGMGD KQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKR YWQELEVAQGDWKNGAMRAFQNFTADADNAAGTAEQMFTVAFSSAGNALATFCTTGKL NFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVN RPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGSGMVMFAPQYNIEINND GTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR" misc_feature <736216..>736890 /locus_tag="SF0713" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" misc_feature 736807..737400 /locus_tag="SF0713" /note="Prophage tail length tape measure protein; Region: TMP_2; pfam06791" /db_xref="CDD:429120" misc_feature <737578..>738405 /locus_tag="SF0713" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" misc_feature 738079..739041 /locus_tag="SF0713" /note="phage tail tape measure protein, lambda family; Region: tape_meas_lam_C; TIGR01541" /db_xref="CDD:273681" gene 739164..739493 /locus_tag="SF0714" /db_xref="GeneID:1023680" CDS 739164..739493 /locus_tag="SF0714" /codon_start=1 /transl_table=11 /product="minor tail protein" /protein_id="NP_706642.1" /db_xref="GeneID:1023680" /translation="METFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTY SVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIRVVCRKWSASVGALWVTVTA DFEQVVN" misc_feature 739170..739487 /locus_tag="SF0714" /note="Phage minor tail protein; Region: Phage_min_tail; pfam05939" /db_xref="CDD:428681" gene 739493..740191 /locus_tag="SF0715" /db_xref="GeneID:1023694" CDS 739493..740191 /locus_tag="SF0715" /codon_start=1 /transl_table=11 /product="minor tail protein" /protein_id="NP_706643.1" /db_xref="GeneID:1023694" /translation="MQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNE KGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGT VVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDG AVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNT GNFGGFLSINKLSQ" misc_feature 739508..740188 /locus_tag="SF0715" /note="Phage tail protein [Mobilome: prophages, transposons]; Region: gp18; COG4672" /db_xref="CDD:443709" gene 740196..740939 /locus_tag="SF0716" /db_xref="GeneID:1023695" CDS 740196..740939 /locus_tag="SF0716" /codon_start=1 /transl_table=11 /product="tail assembly protein" /protein_id="NP_706644.1" /db_xref="GeneID:1023695" /translation="MTQTESAILAHARRCAPAESCGFVVRTPEGDRYLPSENISGEPE ERFRMAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPWWLVCRGTIHK FRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQNLYLDNLEAT GLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKRERYTDKWQRR THSLWRHREWHASAFTGICNDLAAASTFV" misc_feature 740202..740519 /locus_tag="SF0716" /note="Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains; Region: MPN_NLPC_P60; cd08073" /db_xref="CDD:163704" misc_feature order(740250..740252,740397..740399,740403..740405, 740427..740429,740436..740438) /locus_tag="SF0716" /note="MPN+ (JAMM) motif [active]" /db_xref="CDD:163704" misc_feature order(740397..740399,740403..740405,740436..740438) /locus_tag="SF0716" /note="Zinc-binding site [ion binding]; other site" /db_xref="CDD:163704" misc_feature 740526..740867 /locus_tag="SF0716" /note="NlpC/P60 family; Region: NLPC_P60; cl21534" /db_xref="CDD:473902" gene 740903..741478 /locus_tag="SF0717" /db_xref="GeneID:1023697" CDS 740903..741478 /locus_tag="SF0717" /codon_start=1 /transl_table=11 /product="phage tail protein" /protein_id="NP_706645.1" /db_xref="GeneID:1023697" /translation="MQRFGRRIDLRVKTGAEAIRALATQLPAFRQKLSDGWYQVRIAG RDAGETELSARLNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIM ASNLLFSLGASMTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVL YGEMRVGSRVVSQEISTADEGDGGQVVVIGR" misc_feature 740906..741445 /locus_tag="SF0717" /note="Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons]; Region: COG4723" /db_xref="CDD:443758" gene 741539..745018 /locus_tag="SF0718" /db_xref="GeneID:1023690" CDS 741539..745018 /locus_tag="SF0718" /codon_start=1 /transl_table=11 /product="host specificity protein" /protein_id="NP_706646.1" /db_xref="GeneID:1023690" /translation="MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKS VLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITR TITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTT SQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALV GVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCL WDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRK AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSAL KDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLW LIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLD REITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTL RQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHL TAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQ LALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDP TVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKS AFVEAVGRASDDAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSN EITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIEN TPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNP PAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINKNCRVLGKLSANQIEGDLVKTVG KPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLI VKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLV VVMKKSTAGISIS" misc_feature 742184..744559 /locus_tag="SF0718" /note="Phage-related protein, tail protein J [Mobilome: prophages, transposons]; Region: COG4733" /db_xref="CDD:443767" misc_feature 744467..744889 /locus_tag="SF0718" /note="Fibronectin type III protein; Region: DUF3672; pfam12421" /db_xref="CDD:289206" gene 745086..745685 /locus_tag="SF0719" /db_xref="GeneID:1023718" CDS 745086..745685 /locus_tag="SF0719" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="NP_706647.1" /db_xref="GeneID:1023718" /translation="MRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPG SDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAG LSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAW GAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF" misc_feature 745086..745682 /locus_tag="SF0719" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" gene 745707..747032 /locus_tag="SF0720" /pseudogene="unknown" /db_xref="GeneID:1023717" gene 747111..747734 /locus_tag="SF0721" /db_xref="GeneID:1023698" CDS 747111..747734 /locus_tag="SF0721" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_706649.1" /db_xref="GeneID:1023698" /translation="MHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFD DRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAW RTEQEAKPFTFEWNGRTWNADASSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSM PELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVK" misc_feature 747396..747719 /locus_tag="SF0721" /note="Domain of unknown function (DUF4376); Region: DUF4376; pfam14301" /db_xref="CDD:433852" gene complement(747914..749677) /gene="ipaH_1" /locus_tag="SF0722" /db_xref="GeneID:1023679" CDS complement(747914..749677) /gene="ipaH_1" /locus_tag="SF0722" /codon_start=1 /transl_table=11 /product="invasion plasmid antigen" /protein_id="NP_706650.1" /db_xref="GeneID:1023679" /translation="MKPAHNPSFFRSFCGLGCISRLSVEEQNITDYHRIWDNWAKEGA ATEDRTQAVRLLKICLAFQEPALNLSLLRLRSLPYLPPHIQELNISSNELRSLPELPP SLTVLKASDNRLSRLPALPPHLVALDVSLNRVLTCLPSLPSSLQSLSALLNSLETLPD LPPALQKLSVGNNQLTALPELPCELQELSAFDNRLQELPPLPQNLRLLNVGENQLHRL PELPQRLQSLYIPNNQLNTLPDSIMNLHIYADVNIYNNPLSTRTLQALQRLTSSPDYH GPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDR LSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRK TLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTM LAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKR TEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYR QLTDEVLALRLPENGSQLHHS" misc_feature complement(747959..749599) /gene="ipaH_1" /locus_tag="SF0722" /note="type III secretion system effector E3 ubiquitin transferase SlrP; Region: PRK15370" /db_xref="CDD:185268" misc_feature complement(749186..749308) /gene="ipaH_1" /locus_tag="SF0722" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature complement(749126..749185) /gene="ipaH_1" /locus_tag="SF0722" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature complement(748946..749005) /gene="ipaH_1" /locus_tag="SF0722" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" gene complement(750260..750736) /gene="ybhB" /locus_tag="SF0723" /db_xref="GeneID:1023675" CDS complement(750260..750736) /gene="ybhB" /locus_tag="SF0723" /note="Code: R; COG: COG1881" /codon_start=1 /transl_table=11 /product="kinase inhibitor protein" /protein_id="NP_706651.2" /db_xref="GeneID:1023675" /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLPQGFGSGLVAMPDGVLQTRTDFGKTG YDGAAPPKGETHRYIFTVHALDVERIDVDEGASGAMVGFNVHFHSLASASITAMFS" misc_feature complement(750263..750736) /gene="ybhB" /locus_tag="SF0723" /note="putative kinase inhibitor protein; Provisional; Region: PRK10257" /db_xref="CDD:182339" misc_feature complement(order(750389..750391,750395..750397, 750401..750403,750410..750424,750548..750550, 750554..750556,750578..750583)) /gene="ybhB" /locus_tag="SF0723" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176643" gene complement(750795..752195) /gene="bioA" /locus_tag="SF0725" /db_xref="GeneID:1023684" CDS complement(750795..752195) /gene="bioA" /locus_tag="SF0725" /note="Code: H; COG: COG0161" /codon_start=1 /transl_table=11 /product="adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA" /protein_id="NP_706652.3" /db_xref="GeneID:1023684" /translation="MSSVGGEPWGFSKTCFLLLIRCRLVNLNLFNLVYKSIMTTDDLA FDQRHIWHPYTSMTSPLPVYPVASAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLN AAMKTQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMA LQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSR MDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKMCDREG ILLIADEIATGFGRTGKLFACEYAEIAPDILCLGKALTGGTMTLSATLTTREVAETIS NGEAGCFMHGPTFMGNPLACAAANASLAIIESGEWQQQVAAIEVQLREQLAPARDAEM VADVRVLGAIGVVETTRPVNMAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRL TAAVNRAVQDETFFCQ" misc_feature complement(750801..752084) /gene="bioA" /locus_tag="SF0725" /note="adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated; Region: PRK07986" /db_xref="CDD:181189" misc_feature complement(order(751263..751265,751341..751346, 751350..751352,751452..751454,751644..751646, 751650..751655,751746..751754)) /gene="bioA" /locus_tag="SF0725" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature complement(order(751263..751265,751341..751343, 751350..751352,751452..751454,751650..751655, 751746..751751)) /gene="bioA" /locus_tag="SF0725" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature complement(751263..751265) /gene="bioA" /locus_tag="SF0725" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 752171..753211 /gene="bioB" /locus_tag="SF0724" /db_xref="GeneID:1023676" CDS 752171..753211 /gene="bioB" /locus_tag="SF0724" /note="Code: H; COG: COG0502" /codon_start=1 /transl_table=11 /product="biotin synthase" /protein_id="NP_706653.1" /db_xref="GeneID:1023676" /translation="MAHRPRWTLSQVTELFEKPLLDLLFEAQQVHRQHFEPRQVQVST LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAW KNPHERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEF YGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPES VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC FMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGLNPQQTAVLAGDNEQQQRLGQALMT PDTDEYYNAAAL" misc_feature 752186..753106 /gene="bioB" /locus_tag="SF0724" /note="Biotin synthase or related enzyme [Coenzyme transport and metabolism]; Region: BioB; COG0502" /db_xref="CDD:440268" gene 753208..754362 /gene="bioF" /locus_tag="SF0726" /db_xref="GeneID:1023714" CDS 753208..754362 /gene="bioF" /locus_tag="SF0726" /note="Code: H; COG: COG0156" /codon_start=1 /transl_table=11 /product="8-amino-7-oxononanoate synthase" /protein_id="NP_706654.1" /db_xref="GeneID:1023714" /translation="MSWQEKINAALDARRAADALRRRYPVAQGAGRWLVADDRQYLNF SSNDYLGLSHHPQIIRAWKQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRA LLFISGFAANQAVIAAMMAKEDRIVADRLSHASLLEAASLSPSQLRRFTHNDVAHLAR LLASPCPGQQLVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRG SCWLQKVKPELLVVTFGKGFGVSGAAVLCSSTVADYLLQFARHLIYSTSMPPAQAQAL RASLAVIRRDEGDARREKLVSLIARFRAGVQDLPFTLADSCSAIQPLIVGDNSRALQL AEKLRQQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGNG" misc_feature 753208..754353 /gene="bioF" /locus_tag="SF0726" /note="8-amino-7-oxononanoate synthase; Reviewed; Region: PRK05958" /db_xref="CDD:235655" misc_feature order(753346..753348,753526..753534,753604..753606, 753730..753732,753742..753747,753817..753819, 753823..753828,753904..753906,753913..753915, 754288..754290) /gene="bioF" /locus_tag="SF0726" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:99747" misc_feature order(753526..753534,753604..753606,753730..753732, 753742..753744,753817..753819,753823..753828, 753904..753906,753913..753915) /gene="bioF" /locus_tag="SF0726" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99747" misc_feature 753913..753915 /gene="bioF" /locus_tag="SF0726" /note="catalytic residue [active]" /db_xref="CDD:99747" gene 754349..755104 /gene="bioC" /locus_tag="SF0727" /db_xref="GeneID:1023688" CDS 754349..755104 /gene="bioC" /locus_tag="SF0727" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="biotin biosynthesis protein BioC" /protein_id="NP_706655.2" /db_xref="GeneID:1023688" /translation="MATVNKQAIAAAFGRAAAHYEQHADLQRQSADALLAMLPQRKYT HVLDAGCGPGWMSRHWRERHAQVTALDLSPPMLAQARHKDAADHYLAGDIESLPLATA TFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQARQAVDERP HANRFLPPDEIEESLNGVRYQHHIQLITLWFDDALSAMRSLKGIGATHLHEGRDPRIL TRSQLQRLQLAWPQQQGRYPLTYHLFLGVIARE" misc_feature 754349..755101 /gene="bioC" /locus_tag="SF0727" /note="biotin biosynthesis protein BioC; Provisional; Region: PRK10258" /db_xref="CDD:182340" gene 755097..755774 /gene="bioD" /locus_tag="SF0728" /db_xref="GeneID:1023672" CDS 755097..755774 /gene="bioD" /locus_tag="SF0728" /note="Code: H; COG: COG0132" /codon_start=1 /transl_table=11 /product="dithiobiotin synthetase" /protein_id="NP_706656.2" /db_xref="GeneID:1023672" /translation="MSKRYFVTGTDTEVGKTVASCALLQAAKAVGYRTAGYKPVASGS EKTPEGLRNSDALALQHNSSLQLDYATVNPYTFAESTSPHIISAQEGRPIESLVMSAG LRALEQQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTA QAIQHAGLTLAGWVANDVTPPGKRHAEYMTTLTRMIPAPLLGEIPWLAENPENAATGK YINLALL" misc_feature 755100..755768 /gene="bioD" /locus_tag="SF0728" /note="Dethiobiotin synthetase [Coenzyme transport and metabolism]; Region: BioD; COG0132" /db_xref="CDD:439902" gene 756353..758374 /gene="uvrB" /locus_tag="SF0729" /db_xref="GeneID:1026139" CDS 756353..758374 /gene="uvrB" /locus_tag="SF0729" /note="Code: L; COG: COG0556" /codon_start=1 /transl_table=11 /product="excinuclease ABC subunit B" /protein_id="NP_706657.1" /db_xref="GeneID:1026139" /translation="MSKPFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSG KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV PSSDTFIEKDASVNEHIEQMRLSATKAMLERRDVIVVASVSAIYGLGDPDLYLKMMLH LTVGMIIDQRAILRRLAELQYARNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD EEVERLSLFDPLTGQIVSTIPRFTIYPKTHYVTPRERIVQAMEEIKEELAARRKVLLE NNKLLEEQRLTQRTQFDLEMMDELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV SATPGNYELEKSGGDVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDRSTPSMAKAIG ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGRGKSRPIVEPDNVP MDMLPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS" misc_feature 756353..758371 /gene="uvrB" /locus_tag="SF0729" /note="excinuclease ABC subunit UvrB; Region: PRK05298" /db_xref="CDD:235395" gene complement(758566..759474) /gene="ybhK" /locus_tag="SF0730" /db_xref="GeneID:1023669" CDS complement(758566..759474) /gene="ybhK" /locus_tag="SF0730" /note="Code: S; COG: COG0391" /codon_start=1 /transl_table=11 /product="structural protein" /protein_id="NP_706658.2" /db_xref="GeneID:1023669" /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN GGSTGRIRRSEGGIAWGDMRNCLNQLITEPNVASAMFEYRFGGNGELSGHNLGNLMLK ALDHLSVRPLEAINLIRNLLKVDTHLIPMSEHPVDLMAIDDQGHEVYGEVNIDQLTTP IQELLLTPNVPATREAVHAINEADLIIIGPGSFYTSLMPILLLKEIAQALRRTPAPMV YIGNLGRELSLPAANLKLESKLAIMEQYVGKKVIDAVIVGPKVDVSAVKERIVIQEVL EASDIPYRHDRQLLHNALEKALQALG" misc_feature complement(758578..759441) /gene="ybhK" /locus_tag="SF0730" /note="Family of CofD-like proteins and proteins related to YvcK; Region: CofD_YvcK; cl00425" /db_xref="CDD:444899" misc_feature complement(order(758797..758802,758887..758889, 758899..758904,759418..759426)) /gene="ybhK" /locus_tag="SF0730" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:132873" misc_feature complement(order(759181..759183,759283..759285, 759292..759294,759334..759336,759346..759348)) /gene="ybhK" /locus_tag="SF0730" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:132873" misc_feature complement(order(759112..759117,759124..759126, 759154..759159,759163..759168,759175..759180, 759187..759189,759202..759204)) /gene="ybhK" /locus_tag="SF0730" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132873" gene 759871..760860 /gene="moaA" /locus_tag="SF0731" /db_xref="GeneID:1023722" CDS 759871..760860 /gene="moaA" /locus_tag="SF0731" /note="Code: H; COG: COG2896" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein A" /protein_id="NP_706659.2" /db_xref="GeneID:1023722" /translation="MASQLTDVFARKFYYLRLSITDVCNFRCTYCLPDGYKPSGVTNK GFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVRENDAIRQIAVTTNG YRLERDVANWRDAGLTGINVSVDSLDARQFHAITGQDKFNQVMAGIDAAFEAGFEKVK VNTVLMRDVNHHQLDTFLNWIQHRPIQLRFIELMETGEGSELFRKHHISGQVLRDELL RRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSIGKLHLCLF GEGGVNLRDLLEGDTQQQALEARISAALREKKQTHFLHQNNTGITQNLSYIGG" misc_feature 759871..760857 /gene="moaA" /locus_tag="SF0731" /note="GTP 3',8-cyclase MoaA; Region: moaA; PRK00164" /db_xref="CDD:234672" gene 760882..761394 /gene="moaB" /locus_tag="SF0732" /db_xref="GeneID:1027567" CDS 760882..761394 /gene="moaB" /locus_tag="SF0732" /note="Code: H; COG: COG0521" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis protein B" /protein_id="NP_706660.1" /db_xref="GeneID:1027567" /translation="MSQVSTEFIPTRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHV VDEAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF GEVFRMLSFEEIGTSTLQSRAVAGVANKTLIFAMPGSTKACRTAWENIIAPQLDARTR PCNFHPHLKK" misc_feature 760900..761388 /gene="moaB" /locus_tag="SF0732" /note="molybdenum cofactor biosynthesis protein B, proteobacterial; Region: moaB_proteo; TIGR02667" /db_xref="CDD:131715" misc_feature order(761113..761121,761209..761211,761290..761295, 761305..761307,761314..761316) /gene="moaB" /locus_tag="SF0732" /note="MPT binding site [active]" /db_xref="CDD:238451" misc_feature order(761119..761121,761125..761130,761134..761136, 761146..761148,761170..761178,761191..761193, 761200..761205,761236..761238,761245..761247) /gene="moaB" /locus_tag="SF0732" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238451" gene 761397..761882 /gene="moaC" /locus_tag="SF0733" /db_xref="GeneID:1023713" CDS 761397..761882 /gene="moaC" /locus_tag="SF0733" /note="Code: H; COG: COG0315" /codon_start=1 /transl_table=11 /product="molybdenum cofactor biosynthesis protein MoaC" /protein_id="NP_706661.1" /db_xref="GeneID:1023713" /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI IDGRHHKGDVFATARIAGIQAAKRTWDLIPLCHPLMLSKVEVNLQAEPEHNRVRIETL CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVEAD D" misc_feature 761397..761873 /gene="moaC" /locus_tag="SF0733" /note="cyclic pyranopterin monophosphate synthase MoaC; Region: moaC; PRK09364" /db_xref="CDD:236483" misc_feature order(761439..761450,761553..761630,761637..761657, 761811..761846) /gene="moaC" /locus_tag="SF0733" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238708" misc_feature order(761547..761555,761601..761615,761796..761804) /gene="moaC" /locus_tag="SF0733" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238708" misc_feature order(761547..761549,761595..761597,761616..761618, 761622..761627,761721..761723,761730..761738, 761745..761747,761778..761780,761787..761789) /gene="moaC" /locus_tag="SF0733" /note="putative active site [active]" /db_xref="CDD:238708" gene 761875..762120 /gene="moaD" /locus_tag="SF0734" /db_xref="GeneID:1023720" CDS 761875..762120 /gene="moaD" /locus_tag="SF0734" /note="Code: H; COG: COG1977" /codon_start=1 /transl_table=11 /product="molybdopterin synthase small subunit" /protein_id="NP_706662.2" /db_xref="GeneID:1023720" /translation="MIKVLFFAQVRELVGTDATEVAADYPTVEALRQHLAAQSDRWAL ALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG" misc_feature 761875..762117 /gene="moaD" /locus_tag="SF0734" /note="molybdopterin synthase small subunit; Provisional; Region: moaD; PRK11130" /db_xref="CDD:182985" misc_feature order(761893..761898,762019..762021,762025..762030, 762034..762036,762043..762054,762097..762117) /gene="moaD" /locus_tag="SF0734" /note="MoaD-MoeB interaction site [polypeptide binding]; other site" /db_xref="CDD:340452" misc_feature order(761893..761898,762040..762048,762085..762087, 762100..762117) /gene="moaD" /locus_tag="SF0734" /note="MoaD-MoaE interaction site [polypeptide binding]; other site" /db_xref="CDD:340452" misc_feature order(761893..761898,762043..762048,762103..762117) /gene="moaD" /locus_tag="SF0734" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:340452" misc_feature 762115..762117 /gene="moaD" /locus_tag="SF0734" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:340452" gene 762122..762574 /gene="moaE" /locus_tag="SF0735" /db_xref="GeneID:1023701" CDS 762122..762574 /gene="moaE" /locus_tag="SF0735" /note="Code: H; COG: COG0314" /codon_start=1 /transl_table=11 /product="molybdopterin guanine dinucleotide biosynthesis protein MoaE" /protein_id="NP_706663.1" /db_xref="GeneID:1023701" /translation="MAETKIVVGPQPFSVGEEYPWLAERDEDGAVVTFTGKVRNHNLG DSVKALTLEHYPGMTEKALAEIVDEARNRWPLGRVTVIHRIGELWPGDEIVFVGVTSA HRSSAFEAGQFIMDYLKTRAPFWKREATPEGDRWVEARESDLQAAKRW" misc_feature 762122..762571 /gene="moaE" /locus_tag="SF0735" /note="molybdopterin synthase catalytic subunit MoaE; Region: moaE; PRK10678" /db_xref="CDD:182642" misc_feature order(762176..762178,762188..762190,762206..762208, 762212..762226,762230..762232,762236..762238, 762398..762400,762425..762427,762431..762433, 762455..762457,762467..762469) /gene="moaE" /locus_tag="SF0735" /note="MoaE homodimer interface [polypeptide binding]; other site" /db_xref="CDD:238385" misc_feature order(762278..762280,762284..762286,762293..762295, 762302..762304,762314..762316,762368..762370, 762476..762481,762485..762487,762491..762499, 762527..762529) /gene="moaE" /locus_tag="SF0735" /note="MoaD interaction [polypeptide binding]; other site" /db_xref="CDD:238385" misc_feature order(762476..762478,762497..762499) /gene="moaE" /locus_tag="SF0735" /note="active site residues [active]" /db_xref="CDD:238385" gene 762711..763415 /gene="ybhL" /locus_tag="SF0736" /db_xref="GeneID:1023730" CDS 762711..763415 /gene="ybhL" /locus_tag="SF0736" /note="Code: R; COG: COG0670" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706664.2" /db_xref="GeneID:1023730" /translation="MDRFPRSDSIVQPWAGLQTYMAQVYGWMTVGLLLTAFVAWYAAN SAAVMELLFTNRVFLIGLIIAQLALVIVLSAMIQKLSAGVTTMLFMLYSALTGLTLSS IFIVYTAASIASTFVVTAGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFW LKSEALMWAVTYIGVIVFVGLTAYDTQKLKNMGEQIDTRDTSNLRKYSILGALTLYLD FINLFLMLLRIFGNRR" misc_feature 762756..763403 /gene="ybhL" /locus_tag="SF0736" /note="Bacterial BAX inhibitor (BI)-1/YccA-like proteins; Region: BI-1-like_bacterial; cd10432" /db_xref="CDD:198414" gene 763620..764333 /gene="ybhM" /locus_tag="SF0737" /db_xref="GeneID:1023674" CDS 763620..764333 /gene="ybhM" /locus_tag="SF0737" /note="Code: R; COG: COG0670" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706665.2" /db_xref="GeneID:1023674" /translation="MESYSQNSNKLDFQHEARILNGIWLITALGLVATAGLAWGAKYL EITATKYDSPPMYVAIGLLLLCMYGLSKDINKINAAIAGVIYLFLLSLVAIVVASLVP VYAIIIVFSTAGAMFLISMLAGLLFNVDPGSHRFIIMMTLTGLALVIIVNAALMSERP IWVISCLMIVLWPGIISHGRNKLLELAGKCHSEELWSPVRCAFTGALTLYYYFIGFFG ILAAIAITLVWQRHTRFFH" misc_feature 763662..764288 /gene="ybhM" /locus_tag="SF0737" /note="Bacterial BAX inhibitor (BI)-1/YccA-like proteins; Region: BI-1-like_bacterial; cd10432" /db_xref="CDD:198414" gene complement(764369..765325) /gene="ybhN" /locus_tag="SF0738" /db_xref="GeneID:1027550" CDS complement(764369..765325) /gene="ybhN" /locus_tag="SF0738" /note="Code: R; COG: COG0392" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706666.1" /db_xref="GeneID:1027550" /translation="MSKSHPRWRLAKKILTWLFFIAVIVLLVVYAKKVDWEEVWKVIR DYNRVALLSAVGLVVVSYLIYGCYDLLARFYCGHKLAKRQVMLVSFICYAFNLTLSTW VGGIGMRYRLYSRLGLPGSTITRISSLSITTNWLGYILLAGIIFTAGVVELPDYWYVD QTTLRILGIGLLMIIAVYLWFCAFAKHRHMTIKGQKLVLPSWKFALAQMLISSVNWMV MGAIIWLLLGQSVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFIALLAGEHTSKGS IIAALLAYRVLYYFIPLLLALICYLLLESQAKKLRAKNEAAM" misc_feature complement(<764450..765292) /gene="ybhN" /locus_tag="SF0738" /note="bifunctional lysylphosphatidylglycerol flippase/synthetase MprF; Region: bifunc_MprF; NF033480" /db_xref="CDD:468043" gene complement(765325..766566) /gene="ybhO" /locus_tag="SF0739" /db_xref="GeneID:1023712" CDS complement(765325..766566) /gene="ybhO" /locus_tag="SF0739" /note="Code: I; COG: COG1502" /codon_start=1 /transl_table=11 /product="cardiolipin synthase 2" /protein_id="NP_706667.1" /db_xref="GeneID:1023712" /translation="MKCSWREGNKIQLLENGEQYYPAVFKAIGEAQERIILETFIWFE DNVGKQLHAALLAAAQRGVKAEVLLDGYGSPDLSDEFVNELTAAGVVFRYYDPRPRLF GMRTNVFRRMHRKIVVIDARIAFIGGLNYSSEHMSSYGPEAKQDYAVRLEGPIVEDIL QFELENLPGQSAARRWWRRHHKAEENRQPGEAQVLLVWRDNEEHRDDIERHYLKMLTQ AQREVIIANAYFFPGYRFLHALRKAARRGVRIKLIIQGEPDMPIVRVGARLLYNYLVK GGVQVFEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANVIIHDRHFNQTLRD NLNGIIAADCQQVDETMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPRLTQVDP PAQPTMETQDRVETENTGVNP" misc_feature complement(765334..766563) /gene="ybhO" /locus_tag="SF0739" /note="cardiolipin synthase ClsB; Region: PRK11263" /db_xref="CDD:236888" gene complement(766563..767324) /gene="ybhP" /locus_tag="SF0740" /db_xref="GeneID:1023702" CDS complement(766563..767324) /gene="ybhP" /locus_tag="SF0740" /note="Code: R; COG: COG3568" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706668.1" /db_xref="GeneID:1023702" /translation="MPDQTQQFSFKVLTINIHKGFTAFNRRFILPELRDAVRTVSADI VCLQEVMGAHEVHPLHVENWPDTSHYEFLADTMWSDFAYGRNAVYPEGHHGNAVLSRY PIEHYENRDVSVDGAEKRGVLYCRIVPPMTGKAIHVMCVHLGLREAHRQAQLAMLAEW VNELPDGEPVLVAGDFNDWRQKANHPLKVQAGLDEIFTRAHGRPARTFPVQFPLLRLD RIYVKNASASAPTALPLRTWRHLSDHAPLSAEIHL" misc_feature complement(766566..767315) /gene="ybhP" /locus_tag="SF0740" /note="Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family [General function prediction only]; Region: ElsH; COG3568" /db_xref="CDD:442789" gene 767457..767867 /gene="ybhQ" /locus_tag="SF0741" /db_xref="GeneID:1023732" CDS 767457..767867 /gene="ybhQ" /locus_tag="SF0741" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706669.1" /db_xref="GeneID:1023732" /translation="MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGL CALYCVTVVMMLVFQRHPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLL AIAGLAILAGPAVVSLLAKDKKLHHLTSKHRVRR" misc_feature 767457..767852 /gene="ybhQ" /locus_tag="SF0741" /note="Putative inner membrane protein YbhQ; Region: YbhQ; pfam11076" /db_xref="CDD:431643" gene complement(767829..768935) /gene="ybhR" /locus_tag="SF0742" /db_xref="GeneID:1023708" CDS complement(767829..768935) /gene="ybhR" /locus_tag="SF0742" /note="Code: R; COG: COG0842" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706670.1" /db_xref="GeneID:1023708" /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE VTNATIAIYDEDNGEHSVELTQRFARASAFTHVLLLKSPQEIRPTIDTQKALLLVRFP ADFSRKLDTFQTAPLQLILDGRNSNSAQIAANYLQQIVKNYQQELLEGKPKPNNSELV VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI FIGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISS LCSTQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK DASLDIVWNSLWPLLVITATTGSAAYAMFRRKVM" misc_feature complement(<768042..768932) /gene="ybhR" /locus_tag="SF0742" /note="ABC-type Na+ efflux pump, permease component NatB [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NatB; COG1668" /db_xref="CDD:441274" misc_feature complement(767838..768425) /gene="ybhR" /locus_tag="SF0742" /note="ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: YadH; COG0842" /db_xref="CDD:440604" gene complement(768946..770079) /gene="ybhS" /locus_tag="SF0743" /db_xref="GeneID:1023725" CDS complement(768946..770079) /gene="ybhS" /locus_tag="SF0743" /note="Code: R; COG: COG0842" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706671.1" /db_xref="GeneID:1023725" /translation="MSNPILSWHRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFG YGINLDSSKLRVGILLEQRSEAALDFTHTMTGSPYIDATISDNRQELIAKMQSGKIRG LVVIPVDFAEQMERANATAPIQVITDGSEPNTANFVQGYVEGIWQIWQMQRAEDNGQT FEPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLS TEITRTELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLLILFFISSLFLLSTL GMGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFV STLQSLFLAGNIPVVLVVNVLFLIASAVMFIGLTWLKTKRRLD" misc_feature complement(769078..>770076) /gene="ybhS" /locus_tag="SF0743" /note="ribosome-associated ATPase/putative transporter RbbA; Region: ABC2_perm_RbbA; NF033858" /db_xref="CDD:468210" gene complement(770072..771823) /gene="ybhF" /locus_tag="SF0744" /db_xref="GeneID:1023711" CDS complement(770072..771823) /gene="ybhF" /locus_tag="SF0744" /note="Code: Q; COG: COG1131" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_706672.1" /db_xref="GeneID:1023711" /translation="MTRQDMNDAVITLNGLEKRFPGMDKPAVAPLDCTIHAGYVTGLV GPDGAGKTTLMRMLAGLLKPDSGSATVIGFDPIKNDGALHAVLGYMPQKFGLYEDLTV MENLNLYADLRSVTGEARKQTFARLLEFTSLGPFTGRLAGKLSGGMKQKLGLACTLVG EPKVLLLDEPGVGVDPISRRELWQMVHELAGEGMLILWSTSYLDEAEQCRDVLLMNEG ELLYQGEPKALTQTMAGRSFLMTSPHEGNRKLLQRALKLPQVSDGMIQGKSVRLILKK EATPDDIRHADGMPEININETTPRFEDAFIDLLGGAGTSESPLGAILHTVEGTPGETV IEAKELTKKFGDFAATDHVNFAVKRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGQAL VLGMDLKESSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKISRMS EAFGLKSIASHATDELPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHI NSMVEKGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQSANDEQPDPTME QAFIQLIHDWDKEHSNE" misc_feature complement(<770114..771796) /gene="ybhF" /locus_tag="SF0744" /note="ribosome-associated ATPase/putative transporter RbbA; Region: ABC2_perm_RbbA; NF033858" /db_xref="CDD:468210" gene complement(771801..772799) /locus_tag="SF0745" /db_xref="GeneID:1023716" CDS complement(771801..772799) /locus_tag="SF0745" /note="Code: Q; COG: COG0845" /codon_start=1 /transl_table=11 /product="efflux pump membrane fusion protein" /protein_id="NP_706673.1" /db_xref="GeneID:1023716" /translation="MMKKPVVIGLAVVVLAAVVAGGYWWYQSRQDNGLTLYGNVDIRT VNLSFRVGGRVESLAVDEGDAIKAGQVLGELDHKPYEIALMQAKAGVSVAQAQYDLML AGYRDEEIAQAAAAVKQAQAAYDYEQNFYNRQQGLWKSRTISANDLENARSSRDQAQA TLKSAQDKLRQYRSGNREQDIAQAKASLEQAQAQLAQAELNLQDSTLIAPSDGTLLTR AVEPGTVLNEGGTVFTVSLTRPVWVRAYVDERNLDQAQPGRKVLLYTDGRPDKPYHGQ IGFVSPTAEFTPKTVETPDLRTDLVYRLRIVVTDADDALRQGMPVTVQFGDEAGHE" misc_feature complement(771804..772796) /locus_tag="SF0745" /note="putative efflux pump membrane fusion protein; Provisional; Region: PRK03598" /db_xref="CDD:235136" gene complement(772799..773482) /gene="ybiH" /locus_tag="SF0746" /db_xref="GeneID:1026146" CDS complement(772799..773482) /gene="ybiH" /locus_tag="SF0746" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator" /protein_id="NP_706674.1" /db_xref="GeneID:1026146" /translation="MDCAMNNPAMTIKGEQAKKQLIAAALAQFGEYGMNATTREIAAQ AGQNIAAITYYFGSKEDLYLACAQWIADFIGEQFRPHAEEAERLFAQPQPDRAAIREL ILRACRNMIKLLTQDDTVNLSKFISREQLSPTAAYHLVHEQVISPLHSHLTRLIAAWT GCDANDTRMILHTHALIGEILAFRLGKETILLRTGWTAFDEEKTELINQTVTCHIDLI LQGLSQRSL" misc_feature complement(772802..773473) /gene="ybiH" /locus_tag="SF0746" /note="putative DNA-binding transcriptional regulator; Provisional; Region: PRK11552" /db_xref="CDD:236928" gene 773699..774919 /gene="rhlE" /locus_tag="SF0747" /db_xref="GeneID:1023719" CDS 773699..774919 /gene="rhlE" /locus_tag="SF0747" /note="Code: LKJ; COG: COG0513" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase RhlE" /protein_id="NP_706675.1" /db_xref="GeneID:1023719" /translation="MSFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMAS AQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADR MLDMGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASD QVTQHVHFVDKKRKRELLSHMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSVAIH GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRIAIPGYEPDPSIKAEPIQNGRQ QRGGIRLMNKRKTA" misc_feature 773699..774886 /gene="rhlE" /locus_tag="SF0747" /note="ATP-dependent RNA helicase RhlE; Provisional; Region: PRK10590" /db_xref="CDD:236722" misc_feature order(773756..773761,773765..773773,773780..773782, 773834..773857) /gene="rhlE" /locus_tag="SF0747" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350669" gene complement(775093..775575) /gene="ybiA" /locus_tag="SF0749" /db_xref="GeneID:1023696" CDS complement(775093..775575) /gene="ybiA" /locus_tag="SF0749" /note="Code: S; COG: COG3236" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706676.1" /db_xref="GeneID:1023696" /translation="MPVRAQRIQHVMQDTIINFYSTSDDYGDFSNFAARPIKVDGNTW PTSEHYFQAQKFLDEKYREEIRRVSSPMVAARMGRNRSKPLRKNWESVKEQVMRKALR AKFEQHAELRVLLLATAPAKLVEHTENDAYWGDGGNGKGKNRLGYLLMELREQLAIEK " misc_feature complement(775105..775548) /gene="ybiA" /locus_tag="SF0749" /note="N-glycosidase YbiA/RibX (riboflavin biosynthesis, damage control), NADAR superfamily [Coenzyme transport and metabolism, Defense mechanisms]; Region: RibX; COG3236" /db_xref="CDD:442468" gene 775695..777845 /gene="dinG" /locus_tag="SF0748" /db_xref="GeneID:1023745" CDS 775695..777845 /gene="dinG" /locus_tag="SF0748" /note="Code: L; COG: COG1199" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase DinG" /protein_id="NP_706677.2" /db_xref="GeneID:1023745" /translation="MALTAALKAQIAAWYKALQEQIPDFIPRAPQRQMIADVAKTLAG EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIYSKDLPLLKK IIPDLKFTAAFGRGRYVCPRNLTALASTEPTQQDLLAFLDDELTPNNQEEQKRCAKLK GDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCYYYRECPFFVTRREIQEAE VVVANHALVMAAMESEAVLPDPKNLLLVLDEGHHLPDVARDALEMSAEITVPWYRLQL DLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEH RFAMGELPDELLEICQRLAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRA LGMFEVQSKLWRLASLAQSSGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWR SIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRFE PSIDNEEQHIAEMAAFFREQVESKKYLGMLVLFASGRAMQRFLDYVTDLRLMLLVQGD QPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVI TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKR LLDALPVFPIEQPEVPEGIVKKKEKTKSPRRRRR" misc_feature 775698..777782 /gene="dinG" /locus_tag="SF0748" /note="ATP-dependent DNA helicase DinG; Provisional; Region: dinG; PRK11747" /db_xref="CDD:236966" gene 777873..778835 /gene="ybiB" /locus_tag="SF0750" /db_xref="GeneID:1023704" CDS 777873..778835 /gene="ybiB" /locus_tag="SF0750" /note="Code: E; COG: COG0547" /codon_start=1 /transl_table=11 /product="glycosyl transferase" /protein_id="NP_706678.1" /db_xref="GeneID:1023704" /translation="MDYRKIIKEIGRGKNHARDLDRDTARGLYAHMLNGEVPDLELGG VLIALRIKGEGEAEMLGFYEAMQNHTIKLTPPAGKPMPIVIPSYNGARKQANLTPLLA ILLHKLGFPVVVHGVSEDPTRVLTETIFELMGITPTLHGGQAQAKLDEHQPVFMPVGA FCPPLEKQLAMRWRMGVRNSAHTLAKLATPFAEGEALCLSSVSHPEYIGRVAKFFSDI GGWALLMHGTEGEVYANPQRCPQINLIDREGMRVLYEKQDPAGSELLPQAKDPETTAQ WTERCLAGSEAIPESLKIQMACCLVATGEAATISDGLARVNQAF" misc_feature 777873..778817 /gene="ybiB" /locus_tag="SF0750" /note="glycosyl transferase family protein; Provisional; Region: PRK08136" /db_xref="CDD:236160" gene 778976..780061 /gene="ybiC" /locus_tag="SF0751" /db_xref="GeneID:1023735" CDS 778976..780061 /gene="ybiC" /locus_tag="SF0751" /note="Code: C; COG: COG2055" /codon_start=1 /transl_table=11 /product="dehydrogenase" /protein_id="NP_706679.1" /db_xref="GeneID:1023735" /translation="MESGHRFDAQTLHSFIQAVFRQMGSEEQEAKLVADHLIAANLAG HDSHGIGMIPSYVRSWSQGHLQINHHAKIVKEAGAAVTLDGDRAFGQVAAHEAMALGI EKAHQHGIAAVALHNSHHIGRIGYWAEQCSAAGFVSIHFVSVVGIPMVAPFHGRDSRF GTNPFCVVFPRKDNFPLLLDYATSAIAFGKTRVAWHKGVPVPPGCLIDVNGVPTTNPA VMQESPLGSLLTFAEHKGYALAAMCEILGGALSGGKTTHQETLQTSPDAILNCMTTII INPELFGAPDCNAQTEAFAEWVKASPHDDDKPILLPGEWEVNTRRERQEQGIPLDAGS WQAICDAARQIGMSEETLQAFCQQLAS" misc_feature 778976..780028 /gene="ybiC" /locus_tag="SF0751" /note="putative dehydrogenase; Provisional; Region: PRK10098" /db_xref="CDD:182240" gene complement(780290..780550) /gene="ybiJ" /locus_tag="SF0752" /db_xref="GeneID:1023700" CDS complement(780290..780550) /gene="ybiJ" /locus_tag="SF0752" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706680.1" /db_xref="GeneID:1023700" /translation="MKTINTVVAAMALSTLSFGVFAAEPVTASQAQNMNKIGVVSADG ASTLDALEAKLAEKAAAAGASGYSITSATNNNKLSGTAVIYK" misc_feature complement(780293..780550) /gene="ybiJ" /locus_tag="SF0752" /note="hypothetical protein; Provisional; Region: PRK10259" /db_xref="CDD:137782" gene complement(780815..781081) /gene="ybiI" /locus_tag="SF0753" /db_xref="GeneID:1023749" CDS complement(780815..781081) /gene="ybiI" /locus_tag="SF0753" /note="Code: T; COG: COG1734" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706681.1" /db_xref="GeneID:1023749" /translation="MASAWANDDAVNEQINSTIEDAIARARGEIPRGESLYECEECGA PIPQARREAIPGVRLCIHCQQEKDLQKPAYTGYNRRGSKDRQLR" misc_feature complement(780818..781081) /gene="ybiI" /locus_tag="SF0753" /note="DksA/TraR family C4-type zinc finger protein; Region: PRK11019" /db_xref="CDD:182903" gene complement(781155..781868) /gene="ybiX" /locus_tag="SF0754" /db_xref="GeneID:1023754" CDS complement(781155..781868) /gene="ybiX" /locus_tag="SF0754" /note="Code: S; COG: COG3128" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706682.3" /db_xref="GeneID:1023754" /translation="MWGAGPTFWRTCMMYHIPGVLSPQDVAHFREQLEQAEWVDGRVT TGAQGAQVKNNQQVDTRSALYAALQNEVLNAVNQHALFFAAALPRTLSTPLFNRYQNN ETYGFHVDGAVRSHPQNGWMRTDLSATLFLSDPQSYDGGELVVNDTFGQHRVKLPAGD LVLYPSSSLHCVTPVTRGVRVASFMWIQSMIRDDKKRAMLFELDKNIQSLKSRYGENE EILSLLNLYHNLLREWSEI" misc_feature complement(781158..781829) /gene="ybiX" /locus_tag="SF0754" /note="Predicted 2-oxoglutarate- and Fe(II)-dependent dioxygenase YbiX [General function prediction only]; Region: PiuC; COG3128" /db_xref="CDD:442362" gene complement(781874..785594) /locus_tag="SF0756" /pseudo /db_xref="GeneID:1023751" misc_feature complement(781874..785594) /locus_tag="SF0756" /note="Similar to Escherichia coli K12 outer membrane receptor for iron transport gi: 1787024 (761 aa). BLAST with identity of 98% in 1240 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element 783863..785290 /mobile_element_type="insertion sequence:IS4" gene 783930..785276 /locus_tag="SF0755" /db_xref="GeneID:1023703" CDS 783930..785276 /locus_tag="SF0755" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_706683.1" /db_xref="GeneID:1023703" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIGQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLSKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature 784020..785018 /locus_tag="SF0755" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene complement(785859..786263) /gene="ybiM" /locus_tag="SF0757" /db_xref="GeneID:1023706" CDS complement(785859..786263) /gene="ybiM" /locus_tag="SF0757" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706684.1" /db_xref="GeneID:1023706" /translation="MHVIDLSYFVKIYRSKNKHFSVNFLRHLHRAGDLHLSGTTRCIY EDVIMKKCLTLLIATVLSGISLTAYAAQPMSNLDSGQLRPAGTVSATGASNLSDLEDK LAEKAREQGAKGYVINSAGGNDQMLGTATIYK" misc_feature complement(785862..786119) /gene="ybiM" /locus_tag="SF0757" /note="DUF1471 family periplasmic protein McbA; Region: peri_YbiM_McbA; NF040473" /db_xref="CDD:439700" gene 786314..787321 /gene="ybiN" /locus_tag="SF0758" /db_xref="GeneID:1023733" CDS 786314..787321 /gene="ybiN" /locus_tag="SF0758" /note="Code: R; COG: COG3129" /codon_start=1 /transl_table=11 /product="23S rRNA (adenine(1618)-N(6))-methyltransferase" /protein_id="NP_706685.1" /db_xref="GeneID:1023733" /translation="MGNDKRSQIFTLSRYAGILRRCLKENAMSAQKPGLHPRNRHHSR YDLATLCQVNPELRQFLTLTPAGEQSVDFANPLAVKALNKALLAHFYAVANWDIPDGF LCPPVPGRADYIHHLADLLAEASGTIPANASILDIGVGANCIYPLIGVHEYGWRFTGS ETSSQALSSAQAIISANPGLNRAIRLRRQKESGAIFNGIIHKNEQYDATLCNPPFHDS AAAARAGSERKRRNLGLNKDDALNFGGQQQELWCEGGEVNFIKKMIEESKGFAKQVMW FTSLVSRGENLPPLYRALTDVGAVKVVKKEMAQGQKQSRFIAWTFMNDEQRRRFVNRQ R" misc_feature 786383..787318 /gene="ybiN" /locus_tag="SF0758" /note="23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF; Region: PRK11727" /db_xref="CDD:236964" gene complement(787318..789381) /gene="ybiO" /locus_tag="SF0759" /db_xref="GeneID:1023710" CDS complement(787318..789381) /gene="ybiO" /locus_tag="SF0759" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706686.1" /db_xref="GeneID:1023710" /translation="MLDNDTSRKELIDQLRTVAATPPAEPVPKIVPPTLVEEQTVLQK VTEVSRHYGEALSARFGQLYRNITGSPHKPFNPQTFSNALSHFSMLAVLVFGFYWLIR LCALPLYRKMGQWARQKNRERSNWLQLPAMIIGAFIIDLLLLALTLFVGQVLSDNLNA GSRTIAFQQSLFLNAFALIEFFKAVLRLIFCPNVAELRPFTIQDESARYWGRRLSWLS SLIGYGLIVAVPIISNQVNVQIGALANVIIMLCMTVWALYLIFRNKKEITQHMLNFAE HSLAFFSLFIRAFALVWHWLASAYFIMLFFFSLFDPGNSLKFMMGATVRSLAIIGIAA FVSGMFSRWLAKTITLSPHTQRNYPELQKRLNGWLSAALKTARILTVCVAVMLLLSAW GLFDFWNWLQNGAGQKTVDILIRIALILFFSAVGWTVLASLIENRLASDIHGRPLPSA RTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDI ITGVFIQFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANF VRGIGSVVANYDVDRHEDADKANQALKDAVTELMENEEIRGLIIGEPNFAGIVGLSNT AFTLRVSFTTLPLKQWTVRFALDSQVKKHFDLAGVRAPVQTYQVLPAPGATPAEPLPP GEPTL" misc_feature complement(787321..789381) /gene="ybiO" /locus_tag="SF0759" /note="putative mechanosensitive channel protein; Provisional; Region: PRK11465" /db_xref="CDD:183147" gene complement(789803..790525) /gene="glnQ" /locus_tag="SF0760" /db_xref="GeneID:1023744" CDS complement(789803..790525) /gene="glnQ" /locus_tag="SF0760" /note="Code: E; COG: COG1126" /codon_start=1 /transl_table=11 /product="glutamine ABC transporter ATP-binding protein" /protein_id="NP_706687.1" /db_xref="GeneID:1023744" /translation="MIEFKNVSKHFGPTQVLHNIDLNIAQGEVVVIIGPSGSGKSTLL RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALGNVMFGP LRVRGANKEEAEKLARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG NPQVLIKNPPSQRLQEFLQHVS" misc_feature complement(789806..790525) /gene="glnQ" /locus_tag="SF0760" /note="glutamine ABC transporter ATP-binding protein GlnQ; Region: glnQ; PRK09493" /db_xref="CDD:181906" gene complement(790522..791181) /gene="glnP" /locus_tag="SF0761" /db_xref="GeneID:1023707" CDS complement(790522..791181) /gene="glnP" /locus_tag="SF0761" /note="Code: E; COG: COG0765" /codon_start=1 /transl_table=11 /product="glutamine ABC transporter permease" /protein_id="NP_706688.1" /db_xref="GeneID:1023707" /translation="MQFDWSAIWPAIPLLIEGAKMTLWISVLGLAGGLVIGLLAGFAR TFGGWIANHVALVFIEVIRGTPIVVQVMFIYFALPMAFNDLRIDPFTAAVVTIMINSG AYIAEITRGAVLSIHKGFREAGLALGLSRWETIRYVILPLALRRMLPPLGNQWIISIK DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI L" misc_feature complement(790525..791181) /gene="glnP" /locus_tag="SF0761" /note="glutamine ABC transporter permease protein; Reviewed; Region: glnP; PRK09494" /db_xref="CDD:181907" misc_feature complement(order(790561..790566,790573..790578, 790585..790590,790594..790599,790606..790611, 790639..790644,790681..790686,790693..790704, 790723..790725,790732..790737,790777..790779, 790828..790830,790837..790842,790852..790854, 790858..790863,790870..790872,790876..790878, 790882..790887,790957..790959,790963..790968, 790975..791004,791008..791019,791047..791049, 791062..791067,791074..791079)) /gene="glnP" /locus_tag="SF0761" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(790687..790704,790957..791001)) /gene="glnP" /locus_tag="SF0761" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(790609..790611,790639..790641, 790648..790650,790684..790686,790900..790902, 790957..790959)) /gene="glnP" /locus_tag="SF0761" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(790756..790758,790768..790773, 790789..790827)) /gene="glnP" /locus_tag="SF0761" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(791320..792066) /gene="glnH" /locus_tag="SF0762" /db_xref="GeneID:1023705" CDS complement(791320..792066) /gene="glnH" /locus_tag="SF0762" /note="Code: E; COG: COG0834" /codon_start=1 /transl_table=11 /product="glutamine ABC transporter substrate-binding protein" /protein_id="NP_706689.1" /db_xref="GeneID:1023705" /translation="MKSVLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGD KYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPALQTKNVDLALAGITITDERKKAID FSDGYYKSGLLVMVKANNNDVKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDEL RDKVNGALKTLRENGTYNEIYKKWFSTEPK" misc_feature complement(791323..792066) /gene="glnH" /locus_tag="SF0762" /note="glutamine ABC transporter periplasmic protein; Reviewed; Region: glnH; PRK09495" /db_xref="CDD:236540" misc_feature complement(order(791530..791535,791644..791649, 791656..791658,791776..791778,791791..791793, 791797..791802,791851..791853,791962..791964, 791971..791973)) /gene="glnH" /locus_tag="SF0762" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270216" gene complement(792470..792973) /gene="dps" /locus_tag="SF0763" /db_xref="GeneID:1023737" CDS complement(792470..792973) /gene="dps" /locus_tag="SF0763" /note="Code: L; COG: COG0783" /codon_start=1 /transl_table=11 /product="DNA starvation/stationary phase protection protein Dps" /protein_id="NP_706690.2" /db_xref="GeneID:1023737" /translation="MSTAKLVKSKATNLLYTRNDVSDSEKKATVELLNRQVIQFIDLS LITKQAHWNMRGANFIAVHEMLDGFRTALIDHLDTMAERAVQLGGVALGTTQVINSKT PLKSYPLDIHNVQDHLKELADRYAIVANDVRKAIGEAKDDDTADILTAASRDLDKFLW FIESNIE" misc_feature complement(792473..792955) /gene="dps" /locus_tag="SF0763" /note="DNA starvation/stationary phase protection protein Dps; Provisional; Region: PRK09448" /db_xref="CDD:236521" misc_feature complement(order(792728..792733,792740..792742, 792752..792754,792785..792787,792818..792823, 792827..792829,792839..792844)) /gene="dps" /locus_tag="SF0763" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153102" misc_feature complement(order(792728..792730,792740..792742, 792773..792775,792785..792787,792821..792823)) /gene="dps" /locus_tag="SF0763" /note="DPS ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153102" misc_feature complement(order(792524..792529,792548..792550)) /gene="dps" /locus_tag="SF0763" /note="ion pore [active]" /db_xref="CDD:153102" gene complement(793272..794159) /gene="ybiF" /locus_tag="SF0764" /db_xref="GeneID:1023743" CDS complement(793272..794159) /gene="ybiF" /locus_tag="SF0764" /note="Code: GER; COG: COG0697" /codon_start=1 /transl_table=11 /product="threonine and homoserine efflux system" /protein_id="NP_706691.2" /db_xref="GeneID:1023743" /translation="MPGSLRKMPVWLPIVILLVAMASIQGGASLAKSLFPLVSAPGVT ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGVSLGGMNYLFYLSIQTVPLGIAVA LEFTGPLAVALFSSRRPVDFVWVVLAVLGLWFLLPLGQDVSHVDLTGCALALGAGACW AIYILSGQRAGAEHGPATVAIGSLIAALIFVPIGALQAGEALWHWSVIPLGLAVVILS TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTPIQLLALGAIIAAS MGSTLTVRKESKIKELDIN" misc_feature complement(793281..794159) /gene="ybiF" /locus_tag="SF0764" /note="threonine and homoserine efflux system; Provisional; Region: PRK10532" /db_xref="CDD:182525" gene 794512..795027 /gene="ompX" /locus_tag="SF0765" /db_xref="GeneID:1023752" CDS 794512..795027 /gene="ompX" /locus_tag="SF0765" /codon_start=1 /transl_table=11 /product="outer membrane protein X" /protein_id="NP_706692.2" /db_xref="GeneID:1023752" /translation="MKKIACLSALAAVLAFTAGTSVAATSTVTGGYAQSDAQGQMNKM GGFNLKYRYEEDNSPLGVIGSFTYTEKSRTASSGDYNKNQYYGITAGPAYRINDWASI YGVVGVGYGKFQTTEYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV GTWIAGVGYRF" misc_feature 794512..795024 /gene="ompX" /locus_tag="SF0765" /note="outer membrane protein OmpX; Region: ompX; PRK09408" /db_xref="CDD:181828" gene complement(795075..796658) /gene="ybiP" /locus_tag="SF0766" /db_xref="GeneID:1023738" CDS complement(795075..796658) /gene="ybiP" /locus_tag="SF0766" /note="Code: R; COG: COG2194" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706693.1" /db_xref="GeneID:1023738" /translation="MNLTLKESLVTRSRVFSPWTAFYFLQSLLINLGLGYPFSLLYTA AFTAILLLLWRTLPRVQKVLVGVSSLVAACYFPFAQAYGAPNFNTLLALHSTNMEEST EILTIFPWYSYLVGLFIFALGVIAIRRKKENEKARWNTFDSLCLVFSVATFFVAPVQN LAWGGVFKLKDTGYPVFRFAKDVIVNNNEVIEEQERMAKLSGMKDTWTVTAVKPKYQT YVVVIGESARRDALGAFGGHWDNTPFASSVNGLIFADYIAASGSTQKSLGLTLNRVVD GKPQFQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEVYFLKEGNFEADK NTKDEALLDMTAQVLAQEHSQPQLIVLHLMGSHPQACDRTQGKYETFVQSKETSCYLY TMTQTDDLLRKLYDQLRNSGSSFSLVYFSDHGLAFKERGKDVQYLAHDDKYQQNFQVP FMVISSGDKAHRVIKARRSANDFLGFFSQWTGIKAKEINIKYPFISEKKAGPIYITNF QLQKVDYNHLGTDIFDPKP" misc_feature complement(795207..796016) /gene="ybiP" /locus_tag="SF0766" /note="Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase; Region: LptA; cd16017" /db_xref="CDD:293741" misc_feature complement(order(795342..795344,795390..795395, 795558..795560,795870..795872,795984..795986)) /gene="ybiP" /locus_tag="SF0766" /note="putative active site [active]" /db_xref="CDD:293741" misc_feature complement(order(795390..795392,795558..795560, 795870..795872,795984..795986)) /gene="ybiP" /locus_tag="SF0766" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:293741" misc_feature complement(order(795339..795344,795348..795350, 795750..795752,795789..795791)) /gene="ybiP" /locus_tag="SF0766" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:293741" gene complement(796930..797058) /locus_tag="SF0766a" /db_xref="GeneID:16608309" CDS complement(796930..797058) /locus_tag="SF0766a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439233.1" /db_xref="GeneID:16608309" /translation="MNEFKRCMRVFSHSPFKVRLMLLSMLCDMVNNKPQQDKPSDK" misc_feature complement(796939..797058) /locus_tag="SF0766a" /note="manganase accumulation protein MntS; Region: small_MntS; NF033226" /db_xref="CDD:468004" gene 797244..797711 /locus_tag="SF0767" /db_xref="GeneID:1027553" CDS 797244..797711 /locus_tag="SF0767" /note="Code: K; COG: COG1321" /codon_start=1 /transl_table=11 /product="manganese transport regulator MntR" /protein_id="NP_706694.1" /db_xref="GeneID:1027553" /translation="MSRRAGTPIAKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL ISDLIREVGEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLA QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSEETLDAFRLFTQKHGAK" misc_feature 797253..797708 /locus_tag="SF0767" /note="manganese-binding transcriptional regulator MntR; Region: PRK11050" /db_xref="CDD:182927" gene 797708..798826 /gene="ybiR" /locus_tag="SF0768" /db_xref="GeneID:1023723" CDS 797708..798826 /gene="ybiR" /locus_tag="SF0768" /note="Code: P; COG: COG0471" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706695.1" /db_xref="GeneID:1023723" /translation="MSLPFLRTLQGDRFFQLLILVGIGLSFFVPFAPKSWPAAIDWHT IITLSGLMLLTKGVELSGYFDVLGRKMVRRFATERRLAMFMVLAAALLSTFLTNDVAL FIVVPLTITLKRLCEIPVNRLIIFEALAVNAGSLLTPIGNPQNILIWGRSGLSFAGFI AQMAPMAGAMMLTLLLLCWCCFPGKALQYHTGVQTPEWKPRLVWNCLGLYIVFLTALE FKQELWGLVIVAAGFVLLARRVVLSVDWTLLLVFMAMFIDVHLLTQLPALQGVLGNVS HLSEPGLWLTAVGLSQVISNVPSTILLLNYVPPSLLLAWAVNVGGFGLLPGSLANLIA LRMANDRRIWWRFHLYSIPMLLWAALVGYVLLVMIPAW" misc_feature 797729..798805 /gene="ybiR" /locus_tag="SF0768" /note="Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate...; Region: YbiR_permease; cd01117" /db_xref="CDD:238537" misc_feature order(797744..797785,797831..797884,797951..798001, 798005..798058,798068..798139,798203..798247, 798317..798355,798371..798415,798437..798493, 798545..798553,798554..798589,798638..798694, 798761..798799) /gene="ybiR" /locus_tag="SF0768" /note="transmembrane helices; other site" /db_xref="CDD:238537" gene complement(798884..799804) /gene="ybiS" /locus_tag="SF0769" /db_xref="GeneID:1023729" CDS complement(798884..799804) /gene="ybiS" /locus_tag="SF0769" /note="Code: S; COG: COG1376" /codon_start=1 /transl_table=11 /product="L,D-transpeptidase" /protein_id="NP_706696.1" /db_xref="GeneID:1023729" /translation="MNMKLKTLFAAAFAVVGFCSTASAVTYPLPTDGSRLVGQNQVIT IPEGNTQPLEYFAAEYQMGLSNMMEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIV INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVEHKKAGPTWTPTAKMHAE YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNEDI KFLFEKVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGQEIVPITLTKS VQTVTGQPDVDQVVLDEAIKNRSGMPVRLN" misc_feature complement(798887..799804) /gene="ybiS" /locus_tag="SF0769" /note="L,D-transpeptidase; Provisional; Region: PRK10260" /db_xref="CDD:182341" gene 800023..801615 /gene="ybiT" /locus_tag="SF0770" /db_xref="GeneID:1023724" CDS 800023..801615 /gene="ybiT" /locus_tag="SF0770" /note="Code: R; COG: COG0488" /codon_start=1 /transl_table=11 /product="ABC-F family ATPase" /protein_id="NP_706697.1" /db_xref="GeneID:1023724" /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRI YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGW KLRVLLAQALFAEPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV CTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPL FKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSENARIGYYAQDHE YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILEI TPERVIDFSGNYEDYLRSKGIE" misc_feature 800023..801612 /gene="ybiT" /locus_tag="SF0770" /note="ABC transporter ATP-binding protein; Provisional; Region: PRK15064" /db_xref="CDD:237894" gene complement(801856..803121) /gene="ybiU" /locus_tag="SF0771" /db_xref="GeneID:1023715" CDS complement(801856..803121) /gene="ybiU" /locus_tag="SF0771" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706698.2" /db_xref="GeneID:1023715" /translation="MASTFTSDTLPADHKAAIRQMKHALRAQLGDVQQIFNQLSDDIA TRVAEINALKAQGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGHFPREQALGW DQSMLDYLNRNRFDEVYKGPGDNFFGTLSASRPEIYPIYWSQAQMQARQSEEMANAQS FLNRLWTFESDGKQWFNPDVSVIYPDRIRRLPPGTTSKGLGAHTDSGALERWLLPAYQ HVFANVFNGNLAKYDPWHAAHRTEVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL HVVPIPEAMAYVLLRPLLDDVPEDELCGVAPGRVLPVSEQWHPLLIEALTSIPKLEAG DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYAHKVKAALEKGASPGDFP REDYETNWEGRFTLADLNIHGKRALGMDV" misc_feature complement(801865..803076) /gene="ybiU" /locus_tag="SF0771" /note="Protein of unknown function (DUF1479); Region: DUF1479; pfam07350" /db_xref="CDD:399968" gene complement(803273..804088) /locus_tag="SF0772" /db_xref="GeneID:1023741" CDS complement(803273..804088) /locus_tag="SF0772" /note="Code: R; COG: COG0561" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706699.1" /db_xref="GeneID:1023741" /translation="MSVKVIVTDMDGTFLNDAKTYNQPRFMAQYQELKKRGIKFVVAS GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL NFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPL VIDKLHIALDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGN DAEMLKMARYSFAMGNAAENIKQIARYATDDNNHEGALNVIQAVLDNTSPFNS" misc_feature complement(803309..804079) /locus_tag="SF0772" /note="Escherichia coli YbiV sugar phosphatase/phosphotransferase and related proteins; belongs to the haloacid dehalogenase-like superfamily; Region: HAD_YbiV-Like; cd07518" /db_xref="CDD:319820" misc_feature complement(order(803432..803437,803441..803449, 803513..803515,803537..803539,803639..803641, 803645..803647,803888..803890,803951..803959, 804050..804064)) /locus_tag="SF0772" /note="active site" /db_xref="CDD:319820" gene complement(804234..806666) /gene="ybiW" /locus_tag="SF0773" /db_xref="GeneID:1023740" CDS complement(804234..806666) /gene="ybiW" /locus_tag="SF0773" /note="Code: C; COG: COG1882" /codon_start=1 /transl_table=11 /product="formate acetyltransferase" /protein_id="NP_706700.1" /db_xref="GeneID:1023740" /translation="MTTLKLDTLSDRIKAHKNALVHIVKPPVCTERAQHYTEMYQQHL DKPIPVRRALALAHHLANRTIWIKHDELIIGNQASEVRAAPIFPEYTVSWIEKEIDDL ADRPGAGFAVSEENKRVLHEVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT SGDAHLAVNFPLLLEKGLDGLREKVAERRSRINLTVLEDLHGEQFLKAIDIMLVAVSE HIERFAALARAMAATETRESRRDELLAMAENCDLIAHQPPQTFWQALQLCYFIQLILQ IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELLHSCWLKLLEVNKIRSGSH SKASAGSPLYQNVTIGGQNLVDGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM SNDFLDACVHVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKW GYRCTGMSFINFARVMLAALEGGRDATSGKVFLPQEKALSAGNFNNFDEVMDAWDTQI RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI ANLGNSLAAVKKLVFEQGAIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDT VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAQTMATPDGRK AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTAAILGGVLLNQKLNPATLENESDKQK LMILLRTFFEVHKGWHIQYNIVSRETLLEAKKHPDQYRDLVVRVAGYSAFFTALSPDA QDDIIARTEHML" misc_feature complement(804237..806645) /gene="ybiW" /locus_tag="SF0773" /note="glycyl radical enzyme, PFL2/glycerol dehydratase family; Region: PFL2-3; TIGR01774" /db_xref="CDD:273798" gene complement(806672..807598) /gene="ybiY" /locus_tag="SF0774" /db_xref="GeneID:1023728" CDS complement(806672..807598) /gene="ybiY" /locus_tag="SF0774" /note="Code: O; COG: COG1180" /codon_start=1 /transl_table=11 /product="pyruvate formate-lyase 2 activating enzyme" /protein_id="NP_706701.1" /db_xref="GeneID:1023728" /translation="MFERNREATMIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNP ESRARTQDLLYDARLCLEGCELCAKAAPEVIERALNGLLIHREKLTPEHLTALTDCCP TQALTVCGEVKSVEEIMATVLRDKPFYDRSGGGLTLSGGEPFMQPEMATALLQACHEA GIHTAVETCLHVPWKYIAPSLPYIDLFLADLKHVADAPFKQWTDGNAARVLDNLKKLA AAGKKIIIRVPLIQGFNADETSVKAITDFAADELHVGEIHFLPYHTLGINKYHLLNLP YDAPEKPLDAPELLDFAQQYACQKGLTATLRG" misc_feature complement(806696..807568) /gene="ybiY" /locus_tag="SF0774" /note="glycyl-radical enzyme activating protein; Region: PFLE_PFLC; TIGR02494" /db_xref="CDD:274163" gene 807630..808364 /gene="mipB" /locus_tag="SF0775" /db_xref="GeneID:1027551" CDS 807630..808364 /gene="mipB" /locus_tag="SF0775" /note="Code: G; COG: COG0176" /codon_start=1 /transl_table=11 /product="transaldolase" /protein_id="NP_706702.3" /db_xref="GeneID:1027551" /translation="MRQLFREFSRDSLHSDKKYILRMVMELYLDTSDVVAVKALSRIF PLAGVTTNPSIIAAGKKPLDVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDALKLRSI IADIVVKVPVTAEGLAAIKMLKAEGIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRID AQGGSGIQTVTDLHQLLKMHAPQAKVLAASFKTPRQALDCLLAGCESITLPLDVAQQM ISYPAVEAAVTKFEQDWQGAFGRTSI" misc_feature 807702..808361 /gene="mipB" /locus_tag="SF0775" /note="fructose-6-phosphate aldolase; Reviewed; Region: PRK12653" /db_xref="CDD:183653" misc_feature order(807717..807719,807780..807785,807954..807956, 808092..808094,808194..808196) /gene="mipB" /locus_tag="SF0775" /note="active site" /db_xref="CDD:188643" misc_feature order(807750..807752,807759..807761,807786..807791, 807798..807800,807804..807806,807816..807818, 807876..807878,807894..807896,807912..807914, 807972..807974,807978..807983,807990..807992, 808047..808049,808092..808094,808098..808100, 808107..808109,808113..808115,808164..808169, 808206..808208,808212..808214,808230..808235, 808242..808244,808290..808292,808296..808301, 808308..808310,808320..808325,808329..808334) /gene="mipB" /locus_tag="SF0775" /note="intersubunit interactions [active]" /db_xref="CDD:188643" misc_feature 807954..807956 /gene="mipB" /locus_tag="SF0775" /note="catalytic residue [active]" /db_xref="CDD:188643" gene complement(808543..809292) /gene="moeB" /locus_tag="SF0776" /db_xref="GeneID:1023727" CDS complement(808543..809292) /gene="moeB" /locus_tag="SF0776" /note="Code: H; COG: COG0476" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis protein MoeB" /protein_id="NP_706703.1" /db_xref="GeneID:1023727" /translation="MAELSDQEMLRYNRQIILRGFDFDGQEALKDSRVLVVGLGGLGC AASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIA ITPVNALLDDAELAALIAEHDLVLDCTDNVAVRNQLNAGCFAAKVPLVSGAAIRMEGQ ITVFTYQDGEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKLLAGYGKP ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ" misc_feature complement(808561..809292) /gene="moeB" /locus_tag="SF0776" /note="molybdopterin biosynthesis protein MoeB; Provisional; Region: PRK05690" /db_xref="CDD:180204" gene complement(809292..810527) /gene="moeA" /locus_tag="SF0777" /db_xref="GeneID:1023734" CDS complement(809292..810527) /gene="moeA" /locus_tag="SF0777" /note="Code: H; COG: COG0303" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis protein MoeA" /protein_id="NP_706704.1" /db_xref="GeneID:1023734" /translation="MEFTTGLMSLDTALNEMLSRVTPLTTQETLPLVQCFGRILASDV VSPLDVPGFDNSAMDGYAVRLADIASGQPLPVAGKSFAGQPYHGEWPAGTCIRIMTGA PVPEGCEAVVMQEQTEQTDNGVRFTAEVRSGQNIRRRGEDISAGAVVFPAGTRLTTAE LPVIASLGIAEVPVIRKVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGC EVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSVGEADYTKMILEELGEIAFWKL AIKPGKPFAFGKLSNSWFCGLPGNPVSATLTFYQLVQPLLAKLSGNTASGLPARQRVR TASRLKKTPGRLDFQRGVLQRNADGELEVTTTGHQGSHIFSSFSLGNCFIVLERDRGN VDVREWVEVEPFNALFGGL" misc_feature complement(809295..810527) /gene="moeA" /locus_tag="SF0777" /note="molybdopterin biosynthesis protein MoeA; Provisional; Region: PRK10680" /db_xref="CDD:182643" gene 810731..811696 /gene="ybiK" /locus_tag="SF0778" /db_xref="GeneID:1023731" CDS 810731..811696 /gene="ybiK" /locus_tag="SF0778" /note="Code: E; COG: COG1446" /codon_start=1 /transl_table=11 /product="isoaspartyl peptidase" /protein_id="NP_706705.1" /db_xref="GeneID:1023731" /translation="MGKAVIAIHGGAGAISRAQMSLQQELRYIEALSAIVETGQKMLE AGESALDVVTEAVRLLEECPLFNAGIGAVFTRDETHELDACVMDGNTLKAGAVAGVSH LRNPVLAARLVMEQSPHVMMIGEGAENFAFAHGMERVSPEIFSTPLRYEQLLAAREEG ATVLDHSGAPLDEKQKMGTVGAVALDLDGNLAAATSTGGMTNKLPGRVGDSPLVGAGC YANNASVAVSCTGTGEVFIRALAAYDIAALMDYGGLSLAEACERVVMEKLPALGGSGG LIAIDHEGNVALPFNTEGMYRAWGYAGDTPTTGIYREKGDTVATQ" misc_feature 810731..811669 /gene="ybiK" /locus_tag="SF0778" /note="isoaspartyl peptidase; Provisional; Region: PRK10226" /db_xref="CDD:182319" gene 811716..813554 /locus_tag="SF0779" /db_xref="GeneID:1023721" CDS 811716..813554 /locus_tag="SF0779" /note="Code: R; COG: COG1123" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter ATP-binding protein" /protein_id="NP_706706.2" /db_xref="GeneID:1023721" /translation="MLAVENLNIAFMQDQQKIAAVRNLSFSLQRGETLAIVGESGSGK SVTALALMRLLEQAGGLVQCDKMLLRRRSRDVIELSEQSAAQMRHVRGADMAMIFQEP MTSLNPVFTVGEQIAESIRLHQNASREEAMVEAKRMLDQVRIPEAQTILSRYSHQLSG GMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM GVVAEIADRVLVMYQGEAVETGTVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRF PLISLEHPAKQEPPIEQKTVVDGEPVLRVRNLVTRFPLRSGLLNRVTREVHAVEKVSF DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDI QFIFQDPYASLDPRQTIGDSIIEPLRVHGLLPGKDAAARVAWLLERVGLLPEHAWRYP HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLF ISHDMAVVERISHRVAVMYLGQIVEIGSRCAVFENPQHPYTRKLLAAVPVAEPSRQRP QRVLLSDDLPSNIHLRGEEVAAVSLQCVGPGHYVAQPQSEYAFMRR" misc_feature 811716..813551 /locus_tag="SF0779" /note="glutathione transporter ATP-binding protein; Provisional; Region: PRK10261" /db_xref="CDD:182342" gene 813574..815112 /locus_tag="SF0780" /db_xref="GeneID:1026150" CDS 813574..815112 /locus_tag="SF0780" /note="Code: EP; COG: COG0747" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter substrate-binding protein GsiB" /protein_id="NP_706707.2" /db_xref="GeneID:1026150" /translation="MARAVHRSGLVALGIATALMASCAFAAKDVVVAVGSNFTTLDPY DANDTLSQAVAKSFYQGLFGLDKEMKLKNVLAESYTVSDDGITYTVKLREGIKFQDGT DFNAVAVKANLDRASDPANHLKRYNLYKNIAKTEAIDPTTVKITLKQPFSAFINILAH PATAMISPTALEKYGKEIGFHPVGTGPYELDTWNQTDFVKVKKFAGYWQPGLPKLDSI TWRPVADNNTRAAMLQTGEAQFAFPIPYEQATLLEKNKNIELMASPSIMQRYISMNVT QKPFDNPKVREALNYAINRPALVKVAFAGYATPATGVVPPSIAYAQSYKPWPYDPVKA RELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTAMDAGQRAAEV EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTLFNTAFYSNKQVDDFLAQ ALKTNDPAEKTRLYKAAQDIIWQESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFED ADLQ" misc_feature 813574..815109 /locus_tag="SF0780" /note="glutathione ABC transporter substrate-binding protein GsiB; Provisional; Region: PRK15413" /db_xref="CDD:185311" gene 815130..816050 /locus_tag="SF0781" /db_xref="GeneID:1023769" CDS 815130..816050 /locus_tag="SF0781" /note="Code: EP; COG: COG0601" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter permease GsiC" /protein_id="NP_706708.1" /db_xref="GeneID:1023769" /translation="MLYYVIKRLLGLIPTLFIVSVLVFLFVHMLPGDPARLIAGPEAD AQVIELVRQQLGLDQPLYHQFWHYISNAVQGDFGLSMVSRRPVADEIASRFMPTLWLT ITSMVWAVIFGMAAGIIAAVWRNRWPDRLSMTIAVSGISFPAFALGMFLIQVFSVELG WLPTVGADSWQHYILPSLTLGAAVAAVMARFTRASFVDVLSEDYMRTARAKGVSETWV VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVEMRDYPVIQA EILLFSLEFILINLVVDVLYAAINPAIRYK" misc_feature 815130..816047 /locus_tag="SF0781" /note="glutathione ABC transporter permease GsiC; Provisional; Region: PRK15081" /db_xref="CDD:185039" gene 816053..816964 /locus_tag="SF0782" /db_xref="GeneID:1026155" CDS 816053..816964 /locus_tag="SF0782" /note="Code: EP; COG: COG1173" /codon_start=1 /transl_table=11 /product="glutathione ABC transporter permease GsiD" /protein_id="NP_706709.1" /db_xref="GeneID:1026155" /translation="MRLFNWRRQAVLNAMPLVKPDQVRTPWHEFWRRFRRQHMAMTAA LFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ ISLAAGVFAVFIGVAIGTLLGLLAGYYEGWWDRLIMRICDVLFAFPGILLAIAVVAVL GSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDMTILLRHILPGT VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVAVFPA LAIFLTVLAFNLLGDGLRDALDPKIKG" misc_feature 816059..816961 /locus_tag="SF0782" /note="glutathione ABC transporter permease GsiD; Provisional; Region: PRK15082" /db_xref="CDD:185040" gene 817159..819484 /locus_tag="SF0783" /pseudo /db_xref="GeneID:1023786" misc_feature 817159..819484 /locus_tag="SF0783" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787055 (783 aa). BLAST with identity of 98% in 775 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 819492..820820 /locus_tag="SF0784" /db_xref="GeneID:1023764" CDS 819492..820820 /locus_tag="SF0784" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706710.1" /db_xref="GeneID:1023764" /translation="MSRINKFVLTVSLLIFIMISAVACGIYTQMVKERVYSLKQSVID TAFAVANIAEYRRSVAIDLINTLNPTEEQLLVGLRTAYADSVSPSYLYDVGPYLISSD ECIQVKEFEKNYCADIMQVVKYRHVKNTGFISFDGKTFVYYLYPVTHNRSLIFLLGLE RFSLLSKSLVMDSENLMFSLFKNGKPVTGDEYNAKNAIFTVSEAMEHFAYLPTGLYVF AYKKDVYLRVCTLIIFFAALVAVILGASCLYLVRRVINRGIVEKEAIINNHFERVLDG GLFFSAADVKKLYSMYNSAFLDDLTKAMGRKSFDEDLKALPEKGGYLCLFDVDKFKNI NDTFGHLLGDEVLMKVVKILKSQIPVDKGKVYRFGGDEFAVIYTGGTLEELLSILKEI VHFQVGSINLSTSIGVAHSNECTTVERLKMLADERLYKSKKNGRAQISWQ" misc_feature 819567..820178 /locus_tag="SF0784" /note="Gammaproteobacterial periplasmic sensor domain; Region: GAPES2; pfam17156" /db_xref="CDD:319174" misc_feature 820374..820814 /locus_tag="SF0784" /note="diguanylate cyclase; Region: GGDEF; smart00267" /db_xref="CDD:128563" misc_feature order(820470..820472,820602..820604) /locus_tag="SF0784" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(820485..820487,820494..820499,820509..820511, 820521..820523,820590..820592,820596..820607) /locus_tag="SF0784" /note="active site" /db_xref="CDD:143635" misc_feature order(820578..820580,820662..820664) /locus_tag="SF0784" /note="I-site [active]" /db_xref="CDD:143635" gene complement(820867..822192) /gene="rimO" /locus_tag="SF0785" /db_xref="GeneID:1023760" CDS complement(820867..822192) /gene="rimO" /locus_tag="SF0785" /note="Code: J; COG: COG0621" /codon_start=1 /transl_table=11 /product="ribosomal protein S12 methylthiotransferase" /protein_id="NP_706711.1" /db_xref="GeneID:1023760" /translation="MSKVTPQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPSYDD ANMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG PHSYEQVLEHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP SMRGDLVSRPIGEVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTS MVSLCEQLSKLGIWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF KYSPVEGADANALPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIIDEVDE EGAIGRSMADAPEIDGAVYLNGETNVKPGDILRVKVEHADEYDLWGSRV" misc_feature complement(820879..822168) /gene="rimO" /locus_tag="SF0785" /note="ribosomal protein S12 methylthiotransferase RimO; Region: TIGR01125" /db_xref="CDD:273453" gene 822405..822788 /gene="bssR" /locus_tag="SF0786" /db_xref="GeneID:1023773" CDS 822405..822788 /gene="bssR" /locus_tag="SF0786" /codon_start=1 /transl_table=11 /product="biofilm formation regulatory protein BssR" /protein_id="NP_706712.1" /db_xref="GeneID:1023773" /translation="MFVDRQRIDLLNRLIDARVDLAAYVQLRKAKGYMSVSESNHLRD NFFKLNRELHDKSLRLNLHLDQEEWSALHHAEEALATAAVCLMSGHHDCPTVITVNAD KLENCLMSLTLSIQSLQKHAMLEKA" misc_feature 822405..822782 /gene="bssR" /locus_tag="SF0786" /note="Biofilm formation protein (YliH/bssR); Region: YliH; pfam10799" /db_xref="CDD:313902" gene 822899..823837 /gene="yliI" /locus_tag="SF0787" /db_xref="GeneID:1023736" CDS 822899..823837 /gene="yliI" /locus_tag="SF0787" /note="Code: G; COG: COG2133" /codon_start=1 /transl_table=11 /product="dehydrogenase" /protein_id="NP_706713.1" /db_xref="GeneID:1023736" /translation="MHRQSFFLVPLICLSSALWAAPATVNVEVLQDKLDHPWALAFLP DNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWL SYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYL FIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGARAEIWSYGIRNPQG MAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEIVAG TEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGS" misc_feature 822998..823834 /gene="yliI" /locus_tag="SF0787" /note="Glucose / Sorbosone dehydrogenase; Region: GSDH; pfam07995" /db_xref="CDD:429776" gene complement(824010..824642) /gene="yliJ" /locus_tag="SF0788" /db_xref="GeneID:1023726" CDS complement(824010..824642) /gene="yliJ" /locus_tag="SF0788" /note="Code: O; COG: COG0625" /codon_start=1 /transl_table=11 /product="transferase" /protein_id="NP_706714.1" /db_xref="GeneID:1023726" /translation="MSMITLWGRNNSTNVKKVLLTLEELELPYEQILAGREFGINHDA DFLAMNPNGLVPLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMD WANQTLSNAHRGILMGLVRTPPEERDQAAIDASCKECDALFALLDAELAKVKWFSGDE FGVGDIAIAPFIYNLFNVGLTWTPRPNLQRWYQQLTERPAVRKVVMIPVS" misc_feature complement(824019..824636) /gene="yliJ" /locus_tag="SF0788" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: GstA; COG0625" /db_xref="CDD:440390" gene 824861..825877 /locus_tag="SF0789" /db_xref="GeneID:1023759" CDS 824861..825877 /locus_tag="SF0789" /note="Code: M; COG: COG1686" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase subunit A" /protein_id="NP_706715.1" /db_xref="GeneID:1023759" /translation="MDTRVAFMTQYSSLLRGLAAGSAFLFLFAPTAFAAEQTVEAPSV DARAWILMDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKADKIKLTDMVTVGK DAWATGNPALRGSSVMFLKPGDQVSVADLNKGVIIQSGNDACIALADYVAGSQESFIG LMNGYAKKLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPEEYAIHKEKEFT FNKIRQPNRNRLLWSSNLNVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRI RFNESEKLLTWGFRFFETVTPIKPDATFVTQRVWFGDKIEVNLGAGEAGSVRGSLSLT DTPS" misc_feature 824882..825853 /locus_tag="SF0789" /note="serine-type D-Ala-D-Ala carboxypeptidase; Region: PRK10001" /db_xref="CDD:182189" mobile_element 825843..827104 /mobile_element_type="insertion sequence:IS600" gene 825906..826208 /locus_tag="SF0790" /db_xref="GeneID:1023753" CDS 825906..826208 /locus_tag="SF0790" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706716.1" /db_xref="GeneID:1023753" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 825906..826178 /locus_tag="SF0790" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 826244..827062 /locus_tag="SF0791" /db_xref="GeneID:1023771" CDS 826244..827062 /locus_tag="SF0791" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706717.1" /db_xref="GeneID:1023771" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATREGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <826244..827035 /locus_tag="SF0791" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 827089..827352 /locus_tag="SF0792" /db_xref="GeneID:1023748" CDS 827089..827352 /locus_tag="SF0792" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase subunit A" /protein_id="NP_706718.1" /db_xref="GeneID:1023748" /translation="MPVHLTVTIPRGQLKNLKASYTLTEPQLTAPLKKGQVVGTIDFQ LNGKSIEQRPLIVMENVEEGGFFGRMWDFVMMKFHQWFGSWFS" misc_feature <827104..827349 /locus_tag="SF0792" /note="serine-type D-Ala-D-Ala carboxypeptidase; Region: PRK10001" /db_xref="CDD:182189" gene complement(827399..828157) /gene="deoR" /locus_tag="SF0793" /db_xref="GeneID:1023746" CDS complement(827399..828157) /gene="deoR" /locus_tag="SF0793" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor DeoR" /protein_id="NP_706719.1" /db_xref="GeneID:1023746" /translation="METRREERIGQLLQELKRSDKLHLKDAAALLGVSEMTIRRDLNN HSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAKLAATLVEPDQTLFFDCGT TTPWIIEAIDNEIPFTAVCYSLNTFLALKEKPHCRAFLCGGEFHASNAIFKPIDFQQT LNNFCPDIAFYSAAGVHVSKGATCFNLEELPVKHWAMSMAQKHVLVVDHSKFGKVRPA RMGDLKRFDIVVSDCCPEDEYVKYAQTHRIKLMY" misc_feature complement(827402..828157) /gene="deoR" /locus_tag="SF0793" /note="DNA-binding transcriptional repressor DeoR; Provisional; Region: PRK10681" /db_xref="CDD:182644" gene complement(828215..828811) /gene="ybjG" /locus_tag="SF0794" /db_xref="GeneID:1023763" CDS complement(828215..828811) /gene="ybjG" /locus_tag="SF0794" /note="Code: I; COG: COG0671" /codon_start=1 /transl_table=11 /product="undecaprenyl pyrophosphate phosphatase" /protein_id="NP_706720.2" /db_xref="GeneID:1023763" /translation="MLENLNLSLFSLINATPDSAPWMISLAIFIAKDLITVVPLLAAV LWLWGLTAQRQLVIKIAIALAVSLFVSWTMGHLFPHDRPFVENIGYNFLHHAADDSFP SDHGTVIFTFALAFLCWHRLWSGSLLMVLAVVIAWSRVYLGVHWPLDMLGGLLAGMIG CLSAQIIWQAMGHKLYQRLQSWYRVCFALPIRKGWVRD" misc_feature complement(828218..828811) /gene="ybjG" /locus_tag="SF0794" /note="undecaprenyl pyrophosphate phosphatase; Provisional; Region: PRK11837" /db_xref="CDD:183335" misc_feature complement(order(828365..828367,828377..828379, 828395..828397,828497..828505,828566..828568)) /gene="ybjG" /locus_tag="SF0794" /note="active site" /db_xref="CDD:239480" gene 829096..830322 /gene="cmr" /locus_tag="SF0795" /db_xref="GeneID:1023755" CDS 829096..830322 /gene="cmr" /locus_tag="SF0795" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="multidrug efflux system translocase MdfA" /protein_id="NP_706721.1" /db_xref="GeneID:1023755" /translation="MQNKLASGARLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVV EQYQAGIDWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLAILLA QNIEQFTLLRFLQGISFCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLV GAAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETAMRIGEKLSLKELGRDYKLVLKN GRFVAGALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLARL TSRRTVRSLIIMGGWPIMIGLLVAAAATVISSHAYLWMTAGLSIYAFGIGLANAGLVR LTLFASDMSKGTVSAAMGMLQMLIFTVGIEISKHAWLNGGNGLFNLFNLVNGILWLSL MVIFLKDKQMGNSHEG" misc_feature 829114..830319 /gene="cmr" /locus_tag="SF0795" /note="MdfA family multidrug efflux MFS transporter; Region: PRK15402" /db_xref="CDD:185300" gene complement(830363..830647) /gene="ybjH" /locus_tag="SF0796" /db_xref="GeneID:1023747" CDS complement(830363..830647) /gene="ybjH" /locus_tag="SF0796" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706722.1" /db_xref="GeneID:1023747" /translation="MIMKNCLLLGALLMGFTGVAMAQSVTVDVPSGYKVVVVPDSVSV PQAVSVATVPQTVYVAPAPAPAYRPHPYVRHLASVGEGMVIEHQIDDHHH" gene complement(830733..831521) /locus_tag="SF0797" /db_xref="GeneID:1023765" CDS complement(830733..831521) /locus_tag="SF0797" /note="Code: R; COG: COG0561" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706723.2" /db_xref="GeneID:1023765" /translation="MDGTFLSDQKTYNRERFMAQYQQMKAQGIRFVVASGNQYYQLIS FFPEIANEIAFVAENGGWVMSEGKDVFNGELSKDAFATVVEHLLTRPEVEIIACGKNS AYTLKKYDDAMKTVAEMYYHRLEYVDNFDNLEDIFFKFGLNLSDELIPQVQKALHEAI GDIMVPVHTGNGSIDLIIPGVHKANGLRQLQKLWGIDDSEVVVFGDGGNDIEMLRQAG FSFAMENAGSAVVAAAKYRAGYNNREGVLDVIDKVLKHEAPFDQ" misc_feature complement(830769..831521) /locus_tag="SF0797" /note="Escherichia coli YbiV sugar phosphatase/phosphotransferase and related proteins; belongs to the haloacid dehalogenase-like superfamily; Region: HAD_YbiV-Like; cd07518" /db_xref="CDD:319820" misc_feature complement(order(830892..830897,830901..830909, 830973..830975,830997..830999,831099..831101, 831105..831107,831348..831350,831411..831419, 831510..831521)) /locus_tag="SF0797" /note="active site" /db_xref="CDD:319820" gene complement(831548..832756) /locus_tag="SF0798" /db_xref="GeneID:1023503" CDS complement(831548..832756) /locus_tag="SF0798" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_706724.1" /db_xref="GeneID:1023503" /translation="MTVNSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV SIAEMGGVLFGLSIGSMSGILCSAWLVKRFGTRNVILVTMSCALIGMMILSLALWLTS PLLFAVGLGVFGASFGSAEVAINVEGAAVEREMNKTVLPMMHGFYSLGTLAGAGVGMA LTAFGVPATVHILLAALVGIAPIYIAIQAIPDGTGKNAADGTQHGEKGIPFYRDIQLL LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID SYSRVAVVRASALMGALGIGLIIFVDSAWVAGVSVVLWGLGASLGFPLTISAASDTGP DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMLVVLALVILAAIVAKAVAKPD TKTQTAMENS" misc_feature complement(831617..832714) /locus_tag="SF0798" /note="Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters; Region: MFS_MosC_like; cd17393" /db_xref="CDD:340951" misc_feature complement(order(831701..831703,831710..831715, 831722..831727,831734..831736,831779..831781, 831791..831793,831803..831808,831953..831955, 831965..831967,832049..832051,832058..832066, 832073..832078,832085..832087,832304..832306, 832313..832318,832325..832327,832382..832384, 832391..832399,832403..832408,832565..832567, 832661..832663,832670..832675,832682..832687)) /locus_tag="SF0798" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340951" gene 832840..833376 /locus_tag="SF0799" /db_xref="GeneID:1023780" CDS 832840..833376 /locus_tag="SF0799" /note="Code: S; COG: COG3226" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_706725.2" /db_xref="GeneID:1023780" /translation="MRRANDPQRRGKMIQATLEAVKLYGIHAVTHRKIATLAGVPLGS MTYYFSGIDELLLEAFSSFTEIMSRQYQAFFSDVSDAQGACQAITDMIYSSQVATPDN MELMYQLYALASRKPLLKTVMQNWMQRSQQTLEQWFEPGTARALDAFIEGMTLHFVTD RKPLSREEILRMVERVAG" misc_feature 832840..833373 /locus_tag="SF0799" /note="DNA-binding transcriptional regulator YbjK [Transcription]; Region: YbjK; COG3226" /db_xref="CDD:442459" gene complement(833551..835236) /locus_tag="SF0800" /db_xref="GeneID:1023767" CDS complement(833551..835236) /locus_tag="SF0800" /note="Code: R; COG: COG2985" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_706726.1" /db_xref="GeneID:1023767" /translation="MNINVAELLNGNYILLLFVVLALGLCLGKLRLGSIQLGNSIGVL VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS ALVIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLHHSGMESRQLSLALDNLS LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP DAHARLDPSFRNGKEVFDRDLLDMRIVTEEVVVKNHNAVGKRLAQLKLTDHGCFLNRV IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFVI GLMIGMITFQFSTFSFGMGNAAGLLFAGIMLGFMRANHPTFGYIPQGALSMVKEFGLM VFMAGVGLSAGSGINNGLGAIGGQMLIAGLIVSLVPVVICFLFGAYVLRMNRALLFGA MMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTIIVMVWPGLG" misc_feature complement(833563..835236) /locus_tag="SF0800" /note="putative transporter; Provisional; Region: PRK04972" /db_xref="CDD:179905" gene 835506..835883 /gene="ybjM" /locus_tag="SF0801" /db_xref="GeneID:1023768" CDS 835506..835883 /gene="ybjM" /locus_tag="SF0801" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706727.1" /db_xref="GeneID:1023768" /translation="MKHKQRWAGAICCFVLFIVVCLFLATHMKGAFRAAGHPEIGLLF FILPGAVASFFSQRREVLKPLFGAMLAAPCSMLIMRLFFSPTRSFWQELAWLLSAVFW CALGALCFLFISSLFKPQHRKNQ" misc_feature 835512..835856 /gene="ybjM" /locus_tag="SF0801" /note="Putative inner membrane protein of Enterobacteriaceae; Region: YbjM; pfam11045" /db_xref="CDD:431625" gene complement(835913..836170) /gene="grxA" /locus_tag="SF0802" /db_xref="GeneID:1023787" CDS complement(835913..836170) /gene="grxA" /locus_tag="SF0802" /note="Code: O; COG: COG0695" /codon_start=1 /transl_table=11 /product="glutaredoxin" /protein_id="NP_706728.2" /db_xref="GeneID:1023787" /translation="MQTVIFGRSGCPYCVRAKDLAEKLSNERDDFQYQYVDIRAEGIT KEDLQQKAGKPVETVPQIFVDQQHIGGYTDFAAWVKENLDA" misc_feature complement(835919..836170) /gene="grxA" /locus_tag="SF0802" /note="glutaredoxin 1; Provisional; Region: grxA; PRK11200" /db_xref="CDD:183036" misc_feature complement(order(835994..835999,836132..836140, 836147..836149)) /gene="grxA" /locus_tag="SF0802" /note="GSH binding site [chemical binding]; other site" /db_xref="CDD:239017" misc_feature complement(order(836129..836131,836138..836140)) /gene="grxA" /locus_tag="SF0802" /note="catalytic residues [active]" /db_xref="CDD:239017" gene 836330..836617 /gene="ybjC" /locus_tag="SF0803" /db_xref="GeneID:1023739" CDS 836330..836617 /gene="ybjC" /locus_tag="SF0803" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706729.1" /db_xref="GeneID:1023739" /translation="MRAIGKLPKGVLILEFIGMMLLAVALLSVSDSLSLPEPFSRPEV QILMIFLGVLLMLPAAVVVILQVAKRLAPQLMNCPPQYSRSEREKDNDANH" misc_feature 836330..836608 /gene="ybjC" /locus_tag="SF0803" /note="Protein of unknown function (DUF1418); Region: DUF1418; cl11648" /db_xref="CDD:386195" mobile_element complement(836681..838009) /mobile_element_type="insertion sequence:iso-IS10R" gene complement(836694..837902) /locus_tag="SF0804" /db_xref="GeneID:1023756" CDS complement(836694..837902) /locus_tag="SF0804" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_706730.1" /db_xref="GeneID:1023756" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature complement(836733..837788) /locus_tag="SF0804" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene 837954..838661 /gene="mdaA" /locus_tag="SF0805" /db_xref="GeneID:1023762" CDS 837954..838661 /gene="mdaA" /locus_tag="SF0805" /note="Code: C; COG: COG0778" /codon_start=1 /transl_table=11 /product="nitroreductase A" /protein_id="NP_706731.1" /db_xref="GeneID:1023762" /translation="MCIYLNLMILIKIIRGFISAQCEAIINSARATSSSSFLQCSSII RITDKALREELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVD TAMMAQNALTAAESLGLGGVYIGGLRNNIEAVTKLLKLPQHVLPLFGLCLGWPADNPD LKPRLPASILVHENSYQPLDKDALAQYDEQLAEYYLTRGSNNRWDTWSDHIRRTIIKE SRPFILDYLHKQGWATR" misc_feature 837954..838658 /gene="mdaA" /locus_tag="SF0805" /note="oxygen-insensitive NADPH nitroreductase; Region: PRK10765" /db_xref="CDD:182710" misc_feature order(838023..838025,838029..838037,838041..838052, 838059..838070,838074..838097,838104..838106, 838182..838184,838239..838247,838251..838256, 838263..838268,838275..838280,838287..838289, 838299..838304,838320..838322,838335..838337, 838365..838370,838374..838376,838395..838397, 838437..838448,838452..838454,838458..838469, 838512..838514,838572..838577,838584..838586, 838596..838613) /gene="mdaA" /locus_tag="SF0805" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:380322" misc_feature order(838050..838058,838062..838064,838137..838139, 838143..838145,838254..838259,838266..838268, 838317..838331,838437..838439,838443..838445) /gene="mdaA" /locus_tag="SF0805" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:380322" misc_feature order(838062..838064,838335..838340,838431..838433, 838437..838439,838533..838538,838545..838547) /gene="mdaA" /locus_tag="SF0805" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:380322" gene 838722..839624 /gene="rimK" /locus_tag="SF0806" /db_xref="GeneID:1026162" CDS 838722..839624 /gene="rimK" /locus_tag="SF0806" /note="Code: HJ; COG: COG0189" /codon_start=1 /transl_table=11 /product="ribosomal protein S6 modification protein" /protein_id="NP_706732.1" /db_xref="GeneID:1026162" /translation="MKIAILSRDGTLYSCKRLREAAIQRGHLVEILDPLSCYMNINPA ASSIYYKGRKLPHFDAVIPRIGTAITFYGTAALRQFEMLGSYPLNESVAIARARDKLR SMQLLARQGIDLPVTGIAHSPDDTSDLIDMVGGAPLVVKLVEGTQGIGVVLAETRQAA ESVIDAFRGLNAHILVQEYIKEAQGCDIRCLVVGDEVVAAIERRAKEGYFRSNLHRGG AASVASITLQEREIAIKAARTMALDVAGVDILRANRGPLVMEVNASPGLEGIEKTTGI DIAGKMIRWIERHATTEYCLKTGG" misc_feature 838722..839621 /gene="rimK" /locus_tag="SF0806" /note="30S ribosomal protein S6--L-glutamate ligase; Region: PRK10446" /db_xref="CDD:182468" gene 839712..840188 /gene="ybjN" /locus_tag="SF0807" /db_xref="GeneID:1023761" CDS 839712..840188 /gene="ybjN" /locus_tag="SF0807" /codon_start=1 /transl_table=11 /product="sensory transduction regulator" /protein_id="NP_706733.2" /db_xref="GeneID:1023761" /translation="MTSLVVPGLDTLRQWLDDLGMSFFECDNCQALHLPHMQNFDGVF DAKIDLIDNTILFSAMAEVRPSAVLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC QSLSVMQGVTYEQFAWFVRQSEEQISMVILEANAHQLLLPTDDEGQNNVTENYFLH" misc_feature 839736..840104 /gene="ybjN" /locus_tag="SF0807" /note="Putative bacterial sensory transduction regulator; Region: YbjN; pfam10722" /db_xref="CDD:431456" gene 840540..841652 /gene="potF" /locus_tag="SF0808" /db_xref="GeneID:1023750" CDS 840540..841652 /gene="potF" /locus_tag="SF0808" /note="Code: E; COG: COG0687" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter substrate-binding protein" /protein_id="NP_706734.2" /db_xref="GeneID:1023750" /translation="MTALNKKWLSGLVAGALMAVSVGTLAAEQKTLHIYNWSDYIAPD TVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD KSKLPEWKNLDPELLKLVAKHDPDNKFAMPYMWATTGIGYNVDKVKAVLGENAPVDSW DLILKPENLEKLKSCGVSFLDAPEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLR PNIRYFHSSQYINDLANGDICVAIGWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAF FDVFAMPADAKNKDEAYQFLNYLLRPDVVAHISDHVFYVNANKAATPLVSAEVRENPG IYPPADVRAKLFTLKVQDPKIDRVRTRAWTKVKSGK" misc_feature 840540..841649 /gene="potF" /locus_tag="SF0808" /note="putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional; Region: PRK10682" /db_xref="CDD:182645" misc_feature order(840648..840650,841269..841271,841278..841280, 841365..841367,841371..841373,841479..841481) /gene="potF" /locus_tag="SF0808" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270377" misc_feature order(840681..840683,840690..840695,841443..841448) /gene="potF" /locus_tag="SF0808" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:270377" gene 841666..842880 /gene="potG" /locus_tag="SF0809" /db_xref="GeneID:1023804" CDS 841666..842880 /gene="potG" /locus_tag="SF0809" /note="Code: G; COG: COG1130" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter ATP-binding protein" /protein_id="NP_706735.3" /db_xref="GeneID:1023804" /translation="MPGGRTTPAGNSHHHGALAHIQCRRAAVNDAIPRPQAKTRKALT PLLEIRNLTKSYDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPSAGQ IMLDGVDLSQVPPYLRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEISSRVNEM LGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE VVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEF IGSVNVFEGVLKERQEDGLVLDSPGLVHPLKVDADASVVDNVPVHVALRPEKIMLCEE PPANGCNFAVGEVIHIAYLGDLSVYHVRLKSGQMISAQLQNAHRHRKGLPTWGDEVRL CWEVDSCVVLTV" misc_feature 841747..842877 /gene="potG" /locus_tag="SF0809" /note="putrescine ABC transporter ATP-binding subunit PotG; Region: potG; PRK11607" /db_xref="CDD:183226" gene 842890..843843 /gene="potH" /locus_tag="SF0810" /db_xref="GeneID:1023797" CDS 842890..843843 /gene="potH" /locus_tag="SF0810" /note="Code: E; COG: COG1176" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter permease" /protein_id="NP_706736.1" /db_xref="GeneID:1023797" /translation="MNTLEPAAQSKPPGGFKLWLSQLQMKHGRKLVIALPYIWLILLF LLPFLIVFKISLAEMARAIPPYTELMEWADGQLSITLNLGNFLQLTDDPLYFDAYLQS LQVAAISTFCCLLIGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN NGVLNNFLLWLGVIDQPLTILHTNLAVYIGIVYAYVPFMVLPIYTALIRIDYSLVEAA LDLGARPLKTFFTVIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ EFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEHG" misc_feature 842890..843840 /gene="potH" /locus_tag="SF0810" /note="putrescine transporter subunit: membrane component of ABC superfamily; Provisional; Region: PRK10683" /db_xref="CDD:182646" misc_feature order(843232..843237,843244..843249,843262..843264, 843292..843303,843307..843336,843343..843348, 843391..843393,843466..843471,843475..843477, 843481..843483,843490..843495,843499..843501, 843511..843516,843523..843525,843574..843576, 843616..843621,843628..843630,843649..843660, 843667..843672,843703..843708,843736..843741, 843748..843753,843757..843762,843769..843774, 843781..843786) /gene="potH" /locus_tag="SF0810" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(843310..843351,843391..843393,843649..843666) /gene="potH" /locus_tag="SF0810" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(843391..843393,843451..843453,843667..843669, 843706..843708,843736..843738) /gene="potH" /locus_tag="SF0810" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(843526..843564,843580..843585,843595..843597) /gene="potH" /locus_tag="SF0810" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 843840..844685 /gene="potI" /locus_tag="SF0811" /db_xref="GeneID:1023801" CDS 843840..844685 /gene="potI" /locus_tag="SF0811" /note="Code: E; COG: COG1177" /codon_start=1 /transl_table=11 /product="putrescine ABC transporter permease" /protein_id="NP_706737.2" /db_xref="GeneID:1023801" /translation="MNNLPVVRSPWRIVILLLGFTFLYAPMLMLVIYSFNSSKLVTVW GGWSTRWYGELLRDDAMMSAVGSSLTIAACAATAAAILGTIAAVVLVRFGRFRGSNGF AFMITAPLVMPDVITGLSLLLLFVALAHAIGWPADRGMLTIWLAHVTFCTAYVAVVIS SRLRELDRSIEEAAMDLGATPLKVFFVITLPMIMPAIISGWLLAFTLSLDDLVIASFV SGPGATTLPMLVFSSVRMGVNPEINALATLILGAVGIVGFIAWYLMARAEKQRIRDIQ RARRG" misc_feature 843840..844682 /gene="potI" /locus_tag="SF0811" /note="putrescine transporter subunit: membrane component of ABC superfamily; Provisional; Region: PRK10592" /db_xref="CDD:182574" misc_feature order(844083..844085,844092..844097,844110..844112, 844143..844154,844158..844187,844194..844199, 844203..844205,844281..844283,844287..844289, 844293..844295,844299..844301,844308..844313, 844317..844319,844329..844334,844341..844343, 844392..844394,844434..844439,844446..844448, 844467..844478,844485..844490,844527..844532, 844560..844565,844572..844577,844581..844586, 844593..844598,844605..844607) /gene="potI" /locus_tag="SF0811" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(844161..844205,844467..844484) /gene="potI" /locus_tag="SF0811" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(844203..844205,844266..844268,844485..844487, 844521..844523,844530..844532,844560..844562) /gene="potI" /locus_tag="SF0811" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(844344..844382,844398..844403,844413..844415) /gene="potI" /locus_tag="SF0811" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 844745..845233 /gene="ybjO" /locus_tag="SF0812" /db_xref="GeneID:1026878" CDS 844745..845233 /gene="ybjO" /locus_tag="SF0812" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706738.2" /db_xref="GeneID:1026878" /translation="MEDETLGFFKKTSSSHARLNVPALVQVAALAIIMIRGLDVLMIF NTLGVRGIGEFIHRSVQTWSLTLVFLSSLVLVFIEIWCAFSLVKGRRWARWLYLLTQI TAASYLWAASLGYGYPELFSIPGESKREIFHSLMLQKLPDMLILMLLFVPSTSRRFFQ LQ" misc_feature 844805..845227 /gene="ybjO" /locus_tag="SF0812" /note="Protein of unknown function (DUF2593); Region: DUF2593; pfam10767" /db_xref="CDD:431483" gene 845274..846401 /gene="rumB" /locus_tag="SF0813" /db_xref="GeneID:1023798" CDS 845274..846401 /gene="rumB" /locus_tag="SF0813" /note="Code: J; COG: COG2265" /codon_start=1 /transl_table=11 /product="23S rRNA (uracil(747)-C(5))-methyltransferase RlmC" /protein_id="NP_706739.1" /db_xref="GeneID:1023798" /translation="MQCALYDAGRCRSCQWITQPIPEQLSAKTADLKNLLADFPVEEW CAPVSGPEQGFRNKAKMVVSGSVEKTLLGMLHRDGTPEDLCDCPLYPASFAPVFAALK PFIARAGLTPYNVARKRGELKYILLTESQSDGGMMLRFVLRSDTKLAQLRKALPWLHE QLPQLKVITVNIQPVHMAIMEGETEIYLTEQQALAERFNDVPLWIRPQSFFQTNPAVA SQLYATARDWVRQLPVKHMWDLFCGVGGFGLHCATPDMQLTGIEIAPEAIACAKQSAA ELGLTRLQFQALDSTQFATAQGEVPELVLVNPPRRGIGKPLCDYLSTMAPRFIIYSSC NAQTMAKDIRELPGYRIERVQLFDMFPHTAHYEVLTLLVKQ" misc_feature 845277..846395 /gene="rumB" /locus_tag="SF0813" /note="23S rRNA (uracil-5-)-methyltransferase RumB; Region: meth_trns_rumB; TIGR02085" /db_xref="CDD:131140" misc_feature order(845991..846011,846057..846062,846135..846143, 846192..846194) /gene="rumB" /locus_tag="SF0813" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(846576..847307) /gene="artJ" /locus_tag="SF0814" /db_xref="GeneID:1023757" CDS complement(846576..847307) /gene="artJ" /locus_tag="SF0814" /note="Code: E; COG: COG0834" /codon_start=1 /transl_table=11 /product="arginine ABC transporter substrate-binding protein" /protein_id="NP_706740.2" /db_xref="GeneID:1023757" /translation="MKKLVLAALLASFTFGASAAEKINFGVSATYPPFESIGANNEIV GFDIDLAKALCKQMQAECTFTNHAFDSLIPSLKFRKYDAVISGMDITPERSKQVSFTT PYYENSAVVISKKDTYKTFADLKGKRIGMENGTTHQKYIQDQHPEVKTVSYDSYQNAF IDLKNGRIDGVFGDTAVVNEWLKTNPQLGVATEKVTDPQYFGTGLGIAVRPDNKALLE KLNNALAAIKADGTYQKINDQWFPQ" misc_feature complement(846585..847250) /gene="artJ" /locus_tag="SF0814" /note="Substrate binding domain of arginine-specific ABC transporter; type 2 periplasmic-binding protein fold; Region: PBP2_Arg_STM4351; cd13700" /db_xref="CDD:270418" misc_feature complement(order(846786..846788,846897..846905, 846912..846914,847026..847028,847041..847046, 847050..847052,847101..847103,847215..847217, 847224..847226)) /gene="artJ" /locus_tag="SF0814" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:270418" gene complement(847599..848267) /gene="artM" /locus_tag="SF0815" /db_xref="GeneID:1023792" CDS complement(847599..848267) /gene="artM" /locus_tag="SF0815" /note="Code: E; COG: COG0765" /codon_start=1 /transl_table=11 /product="arginine transporter permease subunit ArtM" /protein_id="NP_706741.1" /db_xref="GeneID:1023792" /translation="MFEYLPELMKGLHTSLTLTVASLIVALILALIFTIILTLKTPVL VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPALWHLLSEPWLCALIALSLNS AAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRSLSSYSNEVVLVFK STSLAYTITLMEVMGYSQLLYGRTYDVMVFGAAGIIYLVVNGLLTLMMRLIERKALAF ERRN" misc_feature complement(847602..848267) /gene="artM" /locus_tag="SF0815" /note="arginine ABC transporter permease ArtM; Region: artM; PRK11122" /db_xref="CDD:182978" gene complement(848267..848983) /gene="artQ" /locus_tag="SF0816" /db_xref="GeneID:1023776" CDS complement(848267..848983) /gene="artQ" /locus_tag="SF0816" /note="Code: E; COG: COG0765" /codon_start=1 /transl_table=11 /product="arginine transporter permease subunit ArtQ" /protein_id="NP_706742.1" /db_xref="GeneID:1023776" /translation="MNEFFPLASAAGMTVGLAVCALIVGLALAMFFAVWESAKWRPVA WAGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTINLGFVQIPVQMDIENFDVS PFLCGVIALSLLYAAYASQTLRGALKAVPVGQWESGQALGLSKSAIFFRLVMPQMWRH ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFTWYIVAAAIYLVITLL SQYILKRIDLRATRFERRPS" misc_feature complement(848270..848983) /gene="artQ" /locus_tag="SF0816" /note="arginine ABC transporter permease ArtQ; Region: PRK11123" /db_xref="CDD:182979" misc_feature complement(order(848333..848338,848345..848350, 848354..848359,848366..848371,848399..848404, 848441..848446,848453..848464,848483..848485, 848492..848497,848537..848539,848588..848590, 848597..848602,848612..848614,848618..848623, 848630..848632,848636..848638,848642..848647, 848783..848785,848789..848794,848801..848830, 848834..848845,848873..848875,848888..848893, 848900..848905)) /gene="artQ" /locus_tag="SF0816" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(848447..848464,848783..848827)) /gene="artQ" /locus_tag="SF0816" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(848369..848371,848399..848401, 848408..848410,848444..848446,848660..848662, 848783..848785)) /gene="artQ" /locus_tag="SF0816" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(848516..848518,848528..848533, 848549..848587)) /gene="artQ" /locus_tag="SF0816" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(848990..849721) /gene="artI" /locus_tag="SF0817" /db_xref="GeneID:1023758" CDS complement(848990..849721) /gene="artI" /locus_tag="SF0817" /note="Code: E; COG: COG0834" /codon_start=1 /transl_table=11 /product="arginine ABC transporter substrate-binding protein" /protein_id="NP_706743.1" /db_xref="GeneID:1023758" /translation="MKKVLIAALIAGFSLSATAAETIRFATEAPYPPFESIDANNQIV GFDVDLAQALCKEIDATCTFSNQAFDSLIPSLKFRRVEAVMAGMDITPEREKQVLFTT PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK LDLQNGRIDSVFGDTAVVTEWLKDNPKLAAVGDKVTDKDYFGTGLGIAVRQGNTELQQ KLNTALEKVKKDGTYETIYNKWFQK" misc_feature complement(848993..849721) /gene="artI" /locus_tag="SF0817" /note="arginine ABC transporter substrate-binding protein; Region: PRK15007" /db_xref="CDD:184969" gene complement(849739..850467) /gene="artP" /locus_tag="SF0818" /db_xref="GeneID:1023793" CDS complement(849739..850467) /gene="artP" /locus_tag="SF0818" /note="Code: E; COG: COG1126" /codon_start=1 /transl_table=11 /product="arginine transporter ATP-binding subunit" /protein_id="NP_706744.2" /db_xref="GeneID:1023793" /translation="MSIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSL LRVLNLLEMPRSGTLNIAGNHFDFTKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQQN LIEAPCRVLGLSKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP QVLLFDEPTAALDPEITAQIVSIIRELAETNITQVIVTHEVEVARKTASRVVYMENGH IVEQGDASCFTEPQTEAFKNYLSH" misc_feature complement(849742..850467) /gene="artP" /locus_tag="SF0818" /note="arginine transporter ATP-binding subunit; Provisional; Region: artP; PRK11124" /db_xref="CDD:182980" gene complement(850685..851200) /gene="ybjP" /locus_tag="SF0819" /db_xref="GeneID:1023795" CDS complement(850685..851200) /gene="ybjP" /locus_tag="SF0819" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_706745.2" /db_xref="GeneID:1023795" /translation="MRYRSLSLLIPCALLLSACTTVTPAYKDNGPRTGSCVQGGPDSV AQQFYDYRIQHRSNDITALRPYLSDKLATQLSDASRDNSHRELLSSDPFSSRTTLPDS AHVASASTIPNRDARNIPLRVDLKQGDQGWQDEVLMIQEGQCWVIDDVRYLGGSVHAT AGTLRQSIENR" misc_feature complement(850688..851200) /gene="ybjP" /locus_tag="SF0819" /note="putative lipoprotein; Provisional; Region: PRK10533" /db_xref="CDD:182526" gene 851849..853618 /locus_tag="SF0820" /db_xref="GeneID:1023809" CDS 851849..853618 /locus_tag="SF0820" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706746.2" /db_xref="GeneID:1023809" /translation="MINNISDQASSFPGTQLNQSDNFLDSLREFFAILNPSRKGELST WDTIYLHLILAINADSDLIKNDVLLAENIPSANYQFNTFFSNTFEIDVKKYLGKSEDN EVEIKAGNERISIGIRNVSNGKLERQQFLFPLDYENKLQEQLDKYFTIESHPLLYRYT IGSKIANVIFEKLYSRIDFNKEQYISFIKDAFIHFYDYSRRYAISENIDKDAVTNNIA LMSTFYDSDNTSGEVLNNDFTEEESFETALDVEHAIVLGFADDNFETKPVHYQDLLTR FSAFQDTVFNLFPEMHSSHYHDICSVSVDMTKGTQCMIHLMVNEEVFMSLPVPVATMV REDASNLVNLKTLLNDGCFIKYSHFNDVALIKQNISNLYLSHTVVNESILKKCCFENG SLGDVKITNSNVINSAFKNISFRSVKINNVNTHSLKFINCNFFNVDMIRVNLSKCLFH ECSMHGVKIKPWLPVKWTKELISDYLYGCLLSLYSICARDIYNMNAGNNVKVAADAFL EIIFSLKNKYCIKLLSAQDRAFIYEFARMIFAYINDKSIEILLLSCFAAADQKAIQRY RPQSQDGEDFRSHLQYKLPLSAH" misc_feature 852998..>853219 /locus_tag="SF0820" /note="Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown]; Region: YjbI; COG1357" /db_xref="CDD:440968" gene 853829..854152 /locus_tag="SF0821" /db_xref="GeneID:1023799" CDS 853829..854152 /locus_tag="SF0821" /note="Code: S; COG: COG0393" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706747.1" /db_xref="GeneID:1023799" /translation="MQFSTTPTLEGLTIVEYCGVVTGEAILGANIFRDFFAGIRDIVG GRSGAYEKELRKAREIAFEELGSQARALGADAVVGIDIDYETVGQNGSMLMVSVSGTA VKTRR" misc_feature 853829..854146 /locus_tag="SF0821" /note="hypothetical protein; Provisional; Region: PRK02877" /db_xref="CDD:179490" gene 854149..854979 /locus_tag="SF0822" /db_xref="GeneID:1023783" CDS 854149..854979 /locus_tag="SF0822" /note="Code: M; COG: COG3023" /codon_start=1 /transl_table=11 /product="regulator" /protein_id="NP_706748.1" /db_xref="GeneID:1023783" /translation="MRRVFWLVAAALLLAGCAGEKGIVEKEGYQLDTRHQAQAAYPRI KVLVIHYTADDFDSSLATLTDKQVSSHYLIPAVPPRYNGKPRIWQLVPEQELAWHAGI SAWRGATRLNDTSIGIELENRGWQKSSGVKYFAPFEQAQIQALIPLAKDIIARYHIKP ENVVAHADIAPQRKDDPGPLFPWQQLAQQGIGAWPDAQRVNFYLAGRAPHTPVDTASL LELLARYGYDVKPDMTPREQRRVIMAFQMHFRPTLYNGEADAETQAIAEALLDKYGQD " misc_feature 854275..854715 /locus_tag="SF0822" /note="N-acetyl-anhydromuramyl-L-alanine amidase AmpD [Cell wall/membrane/envelope biogenesis]; Region: AmpD; COG3023" /db_xref="CDD:442259" gene complement(854976..856025) /locus_tag="SF0823" /db_xref="GeneID:1026170" CDS complement(854976..856025) /locus_tag="SF0823" /note="Code: MG; COG: COG0451" /codon_start=1 /transl_table=11 /product="nucleotide di-P-sugar epimerase or dehydratase" /protein_id="NP_706749.2" /db_xref="GeneID:1026170" /translation="MRTSFSQQQWIDMKVLVTGATSGLGRNAVEFLCQKGISVRASGR NEAMGKLLEKMGAEFVPTDLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLAN VRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRNIKEDFRPHRFANEFARSKAASE EVINMLSQANPQTRFTILRPQSLFGPHDKVFIPRLAHMMHHYGSILLPHGGSALVDMT YYENAVHAMWLASQEACDKLPSGRVYNITNGEHRTLRSIVQKLIDELNIDCRIRSVPY PMLDMIARSMERLGRKSAKEPPLTHYGASKLNFDFTLDITRAQEELGYQPVITLDEGI EKTAAWLRDHGKLPR" misc_feature complement(854997..855986) /locus_tag="SF0823" /note="Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]; Region: WcaG; COG0451" /db_xref="CDD:440220" gene complement(856088..857518) /gene="ybjT" /locus_tag="SF0824" /db_xref="GeneID:1023800" CDS complement(856088..857518) /gene="ybjT" /locus_tag="SF0824" /note="Code: MG; COG: COG0702" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706750.2" /db_xref="GeneID:1023800" /translation="MPQRILVLGASGYIGQHLVRTLSQQGHQILAAARHVDRLAKLQL ANVSCHKVDLSWPDNLPALLQDIDTVYFLVHSMGEGGDFIAQERQLALNVRDALREVP VKQLIFLSSLQAPPHEQSDHLRARQATADILREANVPVTELRAGIIVGAGSAAFEVMR DMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPANEHRIFEAAGPEVLSYQQQ FEHFMAVSGKRRWLIPIPLPTRWISVWFLNVITSVPPTTARALIQGLKHDLLADDTAL RALIPQRLIAFDDAVRSTLKEEEKLVNSSDWGYDAQAFARWRPEYGYFAKQAGFTVKT SASLAALWLVVNQIGGKERYFFGNILWQTRALMDRAIGHNLAKGRPEREYLQTGDAVD SWKVIVVEPKKQLTLLFGMKAPGLGRLCFTLEDKGDYRTIDVRAFWHPHGMPGLFYWL LMIPAHLFIFRGMAKQIARLAEQSTD" misc_feature complement(856631..857506) /gene="ybjT" /locus_tag="SF0824" /note="atypical (a) SDRs, subgroup 2; Region: SDR_a2; cd05245" /db_xref="CDD:187556" misc_feature complement(order(857075..857086,857141..857143, 857153..857155,857186..857194,857294..857302, 857414..857422,857477..857479,857483..857488, 857492..857494)) /gene="ybjT" /locus_tag="SF0824" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187556" misc_feature complement(order(857141..857143,857153..857155)) /gene="ybjT" /locus_tag="SF0824" /note="putative active site [active]" /db_xref="CDD:187556" misc_feature complement(856130..856519) /gene="ybjT" /locus_tag="SF0824" /note="Protein of unknown function (DUF2867); Region: DUF2867; pfam11066" /db_xref="CDD:431633" gene complement(857529..858530) /gene="ybjU" /locus_tag="SF0825" /db_xref="GeneID:1023782" CDS complement(857529..858530) /gene="ybjU" /locus_tag="SF0825" /note="Code: E; COG: COG2008" /codon_start=1 /transl_table=11 /product="L-threonine aldolase" /protein_id="NP_706751.1" /db_xref="GeneID:1023782" /translation="MIDLRSDTVTRPSRAMLEAMMAAPVGDDVYGDDPTVNALQDYAA ELSGKEAAIFLPTGTQANLVALLSHCERGEEYIVGQAAHNYLFEAGGAAVLGSIQPQP IDAAADGTLPLDKVAMKIKPDDIHFARTKLLSLENTHNGKVLPREYLKEAWEFTRERN LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAI RWRKMAGGGMRQSGILAAAGMYALENNVARLQEDHDNAAWMAEQLREAGADVMRQDTN MLFVRVGEENAAALGEYMKARNVLINASPIVRLVTHLDVSREQLAEVAAHWRAFLAR" misc_feature complement(857532..858530) /gene="ybjU" /locus_tag="SF0825" /note="L-threonine aldolase; Provisional; Region: PRK10534" /db_xref="CDD:236710" misc_feature complement(order(857625..857627,857829..857834, 857862..857867,857874..857879,857922..857924, 857940..857945,858228..858236,858255..858278, 858330..858332,858351..858356,858363..858365, 858465..858473,858480..858482,858498..858509, 858516..858518)) /gene="ybjU" /locus_tag="SF0825" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:99748" misc_feature complement(order(857940..857942,857949..857951, 858024..858026,858033..858035,858123..858125, 858345..858347,858354..858359)) /gene="ybjU" /locus_tag="SF0825" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99748" misc_feature complement(857940..857942) /gene="ybjU" /locus_tag="SF0825" /note="catalytic residue [active]" /db_xref="CDD:99748" gene complement(858567..860285) /gene="poxB" /locus_tag="SF0826" /db_xref="GeneID:1023788" CDS complement(858567..860285) /gene="poxB" /locus_tag="SF0826" /note="Code: EH; COG: COG0028" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase" /protein_id="NP_706752.1" /db_xref="GeneID:1023788" /translation="MKQTVAAYIAKTLESAGVKRIWGVTGDSLNGLSDSLNRMGTIEW MSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNNVPVLAIAAHI PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP GDVALKPAPEGATTHWYHAPQPVVMPEEEELRKLAQLLRYSSNIALMCGSGCAGAHKE LVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQF PYRAFYPTDAKIIQIDINPASIGAHSKVDMALVGDIKSTLRALLPLVEEKTDRKFLDK ALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK MNGKRRLLGSFNHGSMANAMPQALGAQATEPERQVVAMCGDGGFSMLMGDFLSVVQMK LPVKIIVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVD EALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELA KTNWLR" misc_feature complement(858570..860285) /gene="poxB" /locus_tag="SF0826" /note="ubiquinone-dependent pyruvate dehydrogenase; Region: PRK09124" /db_xref="CDD:181661" gene complement(860418..861386) /locus_tag="SF0827" /db_xref="GeneID:1023794" CDS complement(860418..861386) /locus_tag="SF0827" /note="Code: C; COG: COG1018" /codon_start=1 /transl_table=11 /product="HCP oxidoreductase, NADH-dependent" /protein_id="NP_706753.2" /db_xref="GeneID:1023794" /translation="MTMPTNQCPWRIQVHHITQETPDVWTISLICHDHYPYRAGQYAL VSVRNSAETLRAYTISSTPGVSEYITLTVRRIDDGVGSQWLTRDVKRGDYLWLSDAMG EFTCDDKAEDKFLLLAAGCGVTPIMSMRRWLAKNRPQADVRVIYNVRTPQDVIFADEW RNYPVTLVAENNVTEGFIAGRLTRELLADVPDLASRTVMTCGPAPYMDWVEQEVKALG VTRFFKEKFFTPVAEAATSGLKFTKLQPAREFYAPVGTTLLEALESNNVPVVAACRAG VCGCCKTKVVSGEYTVSSTMTLTDAEIAEGYVLACSCHPQGDLVLA" misc_feature complement(860421..861386) /locus_tag="SF0827" /note="HCP oxidoreductase, NADH-dependent; Provisional; Region: PRK10684" /db_xref="CDD:236735" gene complement(861398..863056) /gene="ybjW" /locus_tag="SF0828" /db_xref="GeneID:1023784" CDS complement(861398..863056) /gene="ybjW" /locus_tag="SF0828" /note="Code: C; COG: COG1151" /codon_start=1 /transl_table=11 /product="prismane HCP protein" /protein_id="NP_706754.3" /db_xref="GeneID:1023784" /translation="MIMFCVQCEQTIRTPAENGCSYAQGMCGKTAETSDLQDLLIAAL QGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKA QCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYG LKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMS ILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEM LPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWT RSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDL VSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEG LPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLG VKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLNA" misc_feature complement(861401..863050) /gene="ybjW" /locus_tag="SF0828" /note="hybrid cluster protein; Provisional; Region: PRK05290" /db_xref="CDD:235391" misc_feature complement(order(862976..862978,862997..862999, 863033..863035,863042..863044)) /gene="ybjW" /locus_tag="SF0828" /note="cubane metal cluster [ion binding]; other site" /db_xref="CDD:238895" misc_feature complement(order(861575..861577,861677..861679, 861752..861754,861836..861838,862100..862102, 862232..862234,862304..862306)) /gene="ybjW" /locus_tag="SF0828" /note="hybrid metal cluster [active]" /db_xref="CDD:238895" gene complement(863194..864141) /gene="ybjE" /locus_tag="SF0829" /db_xref="GeneID:1027555" CDS complement(863194..864141) /gene="ybjE" /locus_tag="SF0829" /note="Code: S; COG: COG2431" /codon_start=1 /transl_table=11 /product="surface protein" /protein_id="NP_706755.1" /db_xref="GeneID:1027555" /translation="MCHRAFRLLLCKDWIFMFSGLLIILVPLIVGYLIPLRQQAALKA INQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERG LPWRNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLL FLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVVSSLIGGLINAFILDLPINTALAMASG FGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSM DFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA" misc_feature complement(863197..863778) /gene="ybjE" /locus_tag="SF0829" /note="Lysine export protein LysO/YbjE, DUF340 family [Amino acid transport and metabolism]; Region: LysO; COG2431" /db_xref="CDD:441979" mobile_element complement(864208..865538) /mobile_element_type="insertion sequence:IS2" gene complement(864219..865124) /locus_tag="SF0830" /db_xref="GeneID:1023785" CDS complement(864219..865124) /locus_tag="SF0830" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_706756.1" /db_xref="GeneID:1023785" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(864222..865124) /locus_tag="SF0830" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(865082..865492) /locus_tag="SF0831" /db_xref="GeneID:1023831" CDS complement(865082..865492) /locus_tag="SF0831" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_706757.1" /db_xref="GeneID:1023831" /translation="MIVLILVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(865085..865447) /locus_tag="SF0831" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene complement(865890..866585) /gene="aqpZ" /locus_tag="SF0832" /db_xref="GeneID:1023778" CDS complement(865890..866585) /gene="aqpZ" /locus_tag="SF0832" /note="Code: G; COG: COG0580" /codon_start=1 /transl_table=11 /product="aquaporin Z" /protein_id="NP_706758.2" /db_xref="GeneID:1023778" /translation="MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFG LTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLI ASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAG FAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGII GGLIYRTLLEKRD" misc_feature complement(865893..866585) /gene="aqpZ" /locus_tag="SF0832" /note="aquaporin Z; Provisional; Region: PRK05420" /db_xref="CDD:235453" misc_feature complement(order(866019..866021,866028..866030, 866037..866042,866397..866405,866457..866459)) /gene="aqpZ" /locus_tag="SF0832" /note="amphipathic channel [active]" /db_xref="CDD:238204" misc_feature complement(order(866022..866030,866391..866399)) /gene="aqpZ" /locus_tag="SF0832" /note="Asn-Pro-Ala signature motifs; other site" /db_xref="CDD:238204" mobile_element complement(866622..867389) /mobile_element_type="insertion sequence:IS1" gene complement(866637..867140) /gene="insB" /locus_tag="SF0833" /db_xref="GeneID:1023777" CDS complement(866637..867140) /gene="insB" /locus_tag="SF0833" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706759.2" /db_xref="GeneID:1023777" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYACDRIRRTAVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature complement(866640..867032) /gene="insB" /locus_tag="SF0833" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(867059..867334) /gene="insA" /locus_tag="SF0834" /db_xref="GeneID:1023779" CDS complement(867059..867334) /gene="insA" /locus_tag="SF0834" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706760.1" /db_xref="GeneID:1023779" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YIASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<867062..867313) /gene="insA" /locus_tag="SF0834" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 867786..869444 /gene="ybjD" /locus_tag="SF0835" /db_xref="GeneID:1023817" CDS 867786..869444 /gene="ybjD" /locus_tag="SF0835" /note="Code: L; COG: COG3593" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706761.1" /db_xref="GeneID:1023817" /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL LLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTP CTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLR DARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEH YFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQA KGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVE HVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWV INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV RSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAI HRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD" misc_feature 867786..868910 /gene="ybjD" /locus_tag="SF0835" /note="Protein of unknown function (DUF2813); Region: DUF2813; pfam11398" /db_xref="CDD:431868" misc_feature 868911..869201 /gene="ybjD" /locus_tag="SF0835" /note="topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity; Region: TOPRIM_OLD; cd01026" /db_xref="CDD:173776" misc_feature order(868938..868943,868950..868952,869097..869099, 869103..869105) /gene="ybjD" /locus_tag="SF0835" /note="putative active site [active]" /db_xref="CDD:173776" misc_feature order(868938..868940,869097..869099) /gene="ybjD" /locus_tag="SF0835" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173776" gene complement(869441..870433) /gene="ybjX" /locus_tag="SF0836" /db_xref="GeneID:1023781" CDS complement(869441..870433) /gene="ybjX" /locus_tag="SF0836" /note="Code: S; COG: COG2990" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706762.1" /db_xref="GeneID:1023781" /translation="MVKSTSCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCR PGKFWHRCSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLA ANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMI SMDKEGDSTILFRNSEGIPLAEITFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATK ACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWE SVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG" misc_feature complement(869447..870319) /gene="ybjX" /locus_tag="SF0836" /note="Outer membrane protein VirK/YbjX involved in antimicrobial peptide resistance, DUF535 family [Function unknown]; Region: VirK; COG2990" /db_xref="CDD:442229" gene 870502..870636 /locus_tag="SF0837" /db_xref="GeneID:1023820" CDS 870502..870636 /locus_tag="SF0837" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706763.1" /db_xref="GeneID:1023820" /translation="MKLMTRIGIWSIQNIYEKAENREEALRYCAGDSHRRTDYVMENS " gene 870548..871663 /locus_tag="SF0838" /db_xref="GeneID:1023829" CDS 870548..871663 /locus_tag="SF0838" /note="Code: Q; COG: COG0845" /codon_start=1 /transl_table=11 /product="macrolide transporter subunit MacA" /protein_id="NP_706764.2" /db_xref="GeneID:1023829" /translation="MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPG DLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIK EVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSLQDLDTAATEMAVKQAQI GTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLA DMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYY ARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETR EREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ" misc_feature 870548..871657 /locus_tag="SF0838" /note="macrolide transporter subunit MacA; Provisional; Region: PRK11578" /db_xref="CDD:183211" gene 871660..873606 /gene="ybjZ" /locus_tag="SF0839" /db_xref="GeneID:1023822" CDS 871660..873606 /gene="ybjZ" /locus_tag="SF0839" /note="Code: R; COG: COG0577" /codon_start=1 /transl_table=11 /product="macrolide transporter ATP-binding /permease" /protein_id="NP_706765.1" /db_xref="GeneID:1023822" /translation="MTPLLELKDIRRSYPAGDEQVEVLKGISLNIYAGEMVAIVGASG SGKSTLMNILGCLDKATSGTYRVAGQDIATLDADALAQLRREHFGFIFQRYHLLPHLT VEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALM NGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRD GEIVRNPPAIEKVNVAGGTEPVVNTVSGWRQFVSGFNEALTMAWRALAANKMRTLLTM LGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYD DLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQ EQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVL RVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMD GVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS DVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTAT GILFGWLPARNAARLDPVDALARE" misc_feature 871660..873603 /gene="ybjZ" /locus_tag="SF0839" /note="macrolide ABC transporter ATP-binding protein/permease MacB; Region: PRK10535" /db_xref="CDD:182528" gene complement(873679..873903) /gene="cspD" /locus_tag="SF0840" /db_xref="GeneID:1027556" CDS complement(873679..873903) /gene="cspD" /locus_tag="SF0840" /note="Code: K; COG: COG1278" /codon_start=1 /transl_table=11 /product="stationary phase/starvation inducible regulatory protein CspD" /protein_id="NP_706766.1" /db_xref="GeneID:1027556" /translation="MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA GQSVQFDVHQGPKGNHASVIVPVEVEAAVA" misc_feature complement(873682..873903) /gene="cspD" /locus_tag="SF0840" /note="Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains...; Region: S1_like; cl09927" /db_xref="CDD:471952" misc_feature complement(order(873733..873735,873820..873822, 873853..873855,873880..873882)) /gene="cspD" /locus_tag="SF0840" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature complement(order(873814..873825,873844..873864)) /gene="cspD" /locus_tag="SF0840" /note="RNA-binding motif [active]" /db_xref="CDD:239905" gene 874226..874546 /gene="clpS" /locus_tag="SF0841" /db_xref="GeneID:1023774" CDS 874226..874546 /gene="clpS" /locus_tag="SF0841" /note="Code: S; COG: COG2127" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease adaptor protein ClpS" /protein_id="NP_706767.1" /db_xref="GeneID:1023774" /translation="MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVI DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT LEKA" misc_feature 874226..874543 /gene="clpS" /locus_tag="SF0841" /note="ATP-dependent Clp protease adaptor protein ClpS; Reviewed; Region: clpS; PRK00033" /db_xref="CDD:178809" gene 874577..876853 /gene="clpA" /locus_tag="SF0842" /db_xref="GeneID:1023790" CDS 874577..876853 /gene="clpA" /locus_tag="SF0842" /note="Code: O; COG: COG0542" /codon_start=1 /transl_table=11 /product="ATP-dependent Clp protease ATP-binding subunit" /protein_id="NP_706768.2" /db_xref="GeneID:1023790" /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL EACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNE VTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSE EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD RALARRSQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK KLSDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI EKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN STDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEV SQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKN ELTYGFQSAQKHKAEAAH" misc_feature 874577..876850 /gene="clpA" /locus_tag="SF0842" /note="ATP-dependent Clp protease ATP-binding subunit; Provisional; Region: clpA; PRK11034" /db_xref="CDD:236828" gene complement(877256..877343) /locus_tag="SF4463" /db_xref="GeneID:3161812" tRNA complement(877256..877343) /locus_tag="SF4463" /product="tRNA-Ser" /codon_recognized="UCC" /db_xref="GeneID:3161812" gene complement(877597..877815) /gene="infA" /locus_tag="SF0843" /db_xref="GeneID:1023818" CDS complement(877597..877815) /gene="infA" /locus_tag="SF0843" /note="Code: J; COG: COG0361" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-1" /protein_id="NP_706769.1" /db_xref="GeneID:1023818" /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY IRILTGDKVTVELTPYDLSKGRIVFRSR" misc_feature complement(877600..877815) /gene="infA" /locus_tag="SF0843" /note="translation initiation factor IF-1; Validated; Region: infA; PRK00276" /db_xref="CDD:178954" misc_feature complement(order(877618..877620,877624..877626, 877675..877686,877699..877704,877711..877713, 877747..877749,877765..877773)) /gene="infA" /locus_tag="SF0843" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:239898" misc_feature complement(order(877606..877608,877699..877701, 877711..877713)) /gene="infA" /locus_tag="SF0843" /note="predicted 30S ribosome binding site [active]" /db_xref="CDD:239898" gene complement(878100..878804) /gene="aat" /locus_tag="SF0844" /db_xref="GeneID:1023814" CDS complement(878100..878804) /gene="aat" /locus_tag="SF0844" /note="Code: O; COG: COG2360" /codon_start=1 /transl_table=11 /product="leucyl/phenylalanyl-tRNA--protein transferase" /protein_id="NP_706770.1" /db_xref="GeneID:1023814" /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQR GIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGC ASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFS RMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGR LPNNFWVPRCLFSPQE" misc_feature complement(878124..878768) /gene="aat" /locus_tag="SF0844" /note="Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]; Region: Aat; COG2360" /db_xref="CDD:441927" gene complement(878846..880567) /gene="cydC" /locus_tag="SF0845" /db_xref="GeneID:1023812" CDS complement(878846..880567) /gene="cydC" /locus_tag="SF0845" /note="Code: Q; COG: COG1132" /codon_start=1 /transl_table=11 /product="cysteine/glutathione ABC transporter membrane/ATP-binding protein" /protein_id="NP_706771.1" /db_xref="GeneID:1023812" /translation="MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLS ASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK LLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDF TLAFTLGSVMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGA SDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQP GALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRISDLTDQKPEVTFPDTQTRVA DRVSLTLRDVQFTYPKQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDP QQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALSEIL RRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARTLLHDAPLVLLDEPTEGLDAT TESQILELLAKMMREKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRY YQFKQGL" misc_feature complement(878849..880567) /gene="cydC" /locus_tag="SF0845" /note="cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed; Region: PRK11160" /db_xref="CDD:236865" gene complement(880568..882334) /gene="cydD" /locus_tag="SF0846" /db_xref="GeneID:1023802" CDS complement(880568..882334) /gene="cydD" /locus_tag="SF0846" /note="Code: Q; COG: COG1132" /codon_start=1 /transl_table=11 /product="cysteine/glutathione ABC transporter membrane/ATP-binding protein" /protein_id="NP_706772.1" /db_xref="GeneID:1023802" /translation="MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWF MARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQV LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFP SNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF GRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGEL DFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAH PQRGEAELALTDPLTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSL LNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAAKLRDNVLLARPDA SEQELQAALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLL LDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGRIIEQGR YAELSVAGGPFATLLAHRQEEI" misc_feature complement(880571..882334) /gene="cydD" /locus_tag="SF0846" /note="cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed; Region: PRK11174" /db_xref="CDD:236870" gene complement(882457..883422) /gene="trxB" /locus_tag="SF0847" /db_xref="GeneID:1023830" CDS complement(882457..883422) /gene="trxB" /locus_tag="SF0847" /note="Code: O; COG: COG0492" /codon_start=1 /transl_table=11 /product="thioredoxin reductase" /protein_id="NP_706773.2" /db_xref="GeneID:1023830" /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL TTTTEVENWPGDPNDLTGPLLMARMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNG EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV TGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQ TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK" misc_feature complement(882463..883422) /gene="trxB" /locus_tag="SF0847" /note="thioredoxin reductase; Provisional; Region: PRK10262" /db_xref="CDD:182343" gene 883966..884460 /gene="lrp" /locus_tag="SF0848" /db_xref="GeneID:1023815" CDS 883966..884460 /gene="lrp" /locus_tag="SF0848" /note="Code: K; COG: COG1522" /codon_start=1 /transl_table=11 /product="leucine-responsive transcriptional regulator" /protein_id="NP_706774.2" /db_xref="GeneID:1023815" /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEE IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV IKTR" misc_feature 883966..884457 /gene="lrp" /locus_tag="SF0848" /note="leucine-responsive transcriptional regulator Lrp; Region: PRK11169" /db_xref="CDD:183009" gene 884595..888623 /gene="ftsK" /locus_tag="SF0849" /db_xref="GeneID:1023821" CDS 884595..888623 /gene="ftsK" /locus_tag="SF0849" /note="Code: D; COG: COG1674" /codon_start=1 /transl_table=11 /product="DNA translocase FtsK" /protein_id="NP_706775.1" /db_xref="GeneID:1023821" /translation="MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSF NPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQS SDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS SGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYE DDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDE EITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNSAPITEPVAVAAAATTATQSWA APVEPVTQTPPVASVDVPPSQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQ YNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQ TEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRARERE QLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAA TVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKA REAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAA EAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQ QPQQPVAPQQQYQQPQQPVAPQQQYQQPQQQVAPQPQYQQPQQPVAPQQQYQQPQQPV APQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSL DLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGV KAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRD NPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDV RFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNL AGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKK VEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD QAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSD SESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEA QGIVSEQGHNGNREVLAPPPFD" misc_feature 884595..888620 /gene="ftsK" /locus_tag="SF0849" /note="DNA translocase FtsK; Provisional; Region: PRK10263" /db_xref="CDD:236669" gene 888775..889389 /gene="lolA" /locus_tag="SF0850" /db_xref="GeneID:1027554" CDS 888775..889389 /gene="lolA" /locus_tag="SF0850" /note="Code: M; COG: COG2834" /codon_start=1 /transl_table=11 /product="lipoprotein chaperone" /protein_id="NP_706776.1" /db_xref="GeneID:1027554" /translation="MMKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQ KVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATW LKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIH QFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK" misc_feature 888778..889386 /gene="lolA" /locus_tag="SF0850" /note="periplasmic chaperone LolA; Region: lolA; TIGR00547" /db_xref="CDD:129638" misc_feature order(888892..888894,888898..888900,888904..888906, 888910..888912,888943..888945,888949..888951, 888955..888957,888985..888987,888991..888993, 889009..889011,889015..889017,889042..889044, 889048..889050,889183..889185,889219..889221, 889225..889227,889249..889251,889258..889260, 889264..889266,889288..889290,889294..889296, 889300..889302) /gene="lolA" /locus_tag="SF0850" /note="hydrophobic core; other site" /db_xref="CDD:319983" gene 889400..890743 /gene="ycaJ" /locus_tag="SF0851" /db_xref="GeneID:1023810" CDS 889400..890743 /gene="ycaJ" /locus_tag="SF0851" /note="Code: L; COG: COG2256" /codon_start=1 /transl_table=11 /product="recombination factor protein RarA" /protein_id="NP_706777.1" /db_xref="GeneID:1023810" /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA IEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNR NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY LLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDDTRRAIAELVNGDARRALNTLEMM ADMAEVYDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA QAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA HDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR" misc_feature 889400..890725 /gene="ycaJ" /locus_tag="SF0851" /note="Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair]; Region: RarA; COG2256" /db_xref="CDD:441857" gene 890834..892126 /gene="serS" /locus_tag="SF0852" /db_xref="GeneID:1023819" CDS 890834..892126 /gene="serS" /locus_tag="SF0852" /note="Code: J; COG: COG0172" /codon_start=1 /transl_table=11 /product="seryl-tRNA synthetase" /protein_id="NP_706778.1" /db_xref="GeneID:1023819" /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKT ENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALT IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGS RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLF HTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGR DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG FGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG" misc_feature 890834..892123 /gene="serS" /locus_tag="SF0852" /note="seryl-tRNA synthetase; Provisional; Region: PRK05431" /db_xref="CDD:235461" gene 892692..894809 /gene="dmsA" /locus_tag="SF0853" /db_xref="GeneID:1023811" gene 894820..895437 /gene="dmsB" /locus_tag="SF0854" /db_xref="GeneID:1023813" CDS 894820..895437 /gene="dmsB" /locus_tag="SF0854" /note="Code: C; COG: COG0437" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit B" /protein_id="NP_706780.1" /db_xref="GeneID:1023813" /translation="MTTQYGFFIDSSRCAGCKTCELACKDYKDLTPEVSFRRIYEYAG GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKREDGFVVVDEDVCIGC RYCHMACPYGAPQYNETKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRK KHGDLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV" misc_feature 894829..895308 /gene="dmsB" /locus_tag="SF0854" /note="DMSO reductase, iron-sulfur subunit; Region: DMSO_dmsB; TIGR02951" /db_xref="CDD:131996" gene 895439..896230 /gene="dmsC" /locus_tag="SF0855" /db_xref="GeneID:1023807" CDS 895439..896230 /gene="dmsC" /locus_tag="SF0855" /note="Code: R; COG: COG3302" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit C" /protein_id="NP_706781.2" /db_xref="GeneID:1023807" /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRV IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGW LLAMLKKLSPALRTLWLVVTMVLGVVFVWMMVRVYNSIDTVPTWYSIWTPMGWAMRLL PAISVLALVVSGVMSVMQGTELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCLWI APQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAVAS" misc_feature 895439..896197 /gene="dmsC" /locus_tag="SF0855" /note="DMSO reductase anchor subunit (DmsC); Region: DmsC; pfam04976" /db_xref="CDD:398575" gene complement(896266..896892) /gene="ycaC" /locus_tag="SF0856" /db_xref="GeneID:1023806" CDS complement(896266..896892) /gene="ycaC" /locus_tag="SF0856" /note="Code: Q; COG: COG1335" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706782.1" /db_xref="GeneID:1023806" /translation="MTKPYVRLDKNDAAVLLVDHQAGLLSLVRDIEPDKFKNNVLALG DLAKYFNLPTILTTSFETGPNGPLVLELKAQFPDAPYIARPGNINAWDNEDFVKAVKA TGKKQLIIAGVVTEVCVAFPALSAIEEGFDVFVVTDASGTFNEITRHSAWDRMSQAGA QLMTWFGVACELHRDWRNDIEGLATLFSNHIPDYRNLMTSYDTLTKQK" misc_feature complement(896281..896883) /gene="ycaC" /locus_tag="SF0856" /note="isochorismate family cysteine hydrolase YcaC; Region: C_hydro_YcaC; NF041461" /db_xref="CDD:469349" gene 897207..898355 /gene="ycaD" /locus_tag="SF0857" /db_xref="GeneID:1023857" CDS 897207..898355 /gene="ycaD" /locus_tag="SF0857" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="MFS family transporter protein" /protein_id="NP_706783.1" /db_xref="GeneID:1023857" /translation="MSTYTRPVMLLLSGLLLLTLAIAVLNTLVPLWLAQEHMSTWQVG VVSSSYFTGNLVGTLLTGYVIKRIGFNRSYYLSSFIFAAGCAGLGLMIGFWSWLAWRF VAGVGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYVGTFLGQLLVSKVSTELMSV LPWVTGLTLAGILPLLFTRVLNQQAENHDSTSITAMLKLRQARLGVNGCIISGIVLGS LYGLMPLYLNHKGVSNASIGFWMAVLVSAGILGQWPIGRLADKFGRLLVLRVQVFVVI LGSIAMLSQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGS LLGPSFSAMLMQNFSDNLLFIMIASVSFIYLLMLLRNAGHTPKPVAHV" misc_feature 897207..898349 /gene="ycaD" /locus_tag="SF0857" /note="putative MFS family transporter protein; Provisional; Region: PRK03633" /db_xref="CDD:179614" mobile_element complement(898586..901339) /mobile_element_type="insertion sequence:ISSfl4" gene 898668..899342 /locus_tag="SF0858" /db_xref="GeneID:1023808" CDS 898668..899342 /locus_tag="SF0858" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 transposase" /protein_id="NP_706784.1" /db_xref="GeneID:1023808" /translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE FKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALT DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE MKGGIR" misc_feature 898701..899285 /locus_tag="SF0858" /note="IS66-like element accessory protein TnpA; Region: IS66_access_TnpA; NF038385" /db_xref="CDD:439678" gene 899339..899686 /locus_tag="SF0859" /db_xref="GeneID:1023816" CDS 899339..899686 /locus_tag="SF0859" /note="Code: L; COG: COG3436" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 ORF2" /protein_id="NP_706785.1" /db_xref="GeneID:1023816" /translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF VFRGRSGKMVKILWADRDGLCLFTKRLKRGRFVWPVTREGKVHLTPAQLSMLLEGIAW QHPKRTERPGIRI" misc_feature 899366..899635 /locus_tag="SF0859" /note="IS66 family insertion sequence element accessory protein TnpB; Region: IS66_TnpB; NF033819" /db_xref="CDD:411392" gene 899706..901307 /locus_tag="SF0860" /db_xref="GeneID:1023805" CDS 899706..901307 /locus_tag="SF0860" /note="Code: L; COG: COG3436" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 transposase" /protein_id="NP_706786.1" /db_xref="GeneID:1023805" /translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP PSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADA YAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG WVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLRE VIEKLNDWPSNQVHELLPWNFSSVK" misc_feature 899820..900101 /locus_tag="SF0860" /note="Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007" /db_xref="CDD:463771" misc_feature 900048..901244 /locus_tag="SF0860" /note="IS66 family transposase; Region: transpos_IS66; NF033517" /db_xref="CDD:468053" mobile_element 901339..901619 /note="partial" /mobile_element_type="insertion sequence:IS2" mobile_element complement(901839..903087) /mobile_element_type="insertion sequence:IS911" gene complement(901847..902686) /locus_tag="SF0862" /db_xref="GeneID:1023825" CDS complement(901847..902686) /locus_tag="SF0862" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_706788.1" /db_xref="GeneID:1023825" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature complement(901856..902665) /locus_tag="SF0862" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(902713..903051) /locus_tag="SF0863" /db_xref="GeneID:1023842" CDS complement(902713..903051) /locus_tag="SF0863" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_706789.1" /db_xref="GeneID:1023842" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature complement(902743..903012) /locus_tag="SF0863" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(903199..903489) /locus_tag="SF0864" /db_xref="GeneID:1023796" CDS complement(903199..903489) /locus_tag="SF0864" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706790.1" /db_xref="GeneID:1023796" /translation="MVDLLKAARGQMCTVRIPGYCNHDPETSVLAHYRLAGTCGTAIK PHDMQAAIACSSCHDLIDGRVKTSDYTKEELRLMHAEGVFRTQEIWRKEGYL" misc_feature complement(903208..903486) /locus_tag="SF0864" /note="Putative nuclease YbcO; Region: YbcO; pfam07102" /db_xref="CDD:429293" mobile_element 903723..904985 /mobile_element_type="insertion sequence:IS600" gene 903787..904089 /locus_tag="SF0865" /db_xref="GeneID:1023803" CDS 903787..904089 /locus_tag="SF0865" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706791.1" /db_xref="GeneID:1023803" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 903787..904059 /locus_tag="SF0865" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 904125..904943 /locus_tag="SF0866" /db_xref="GeneID:1023836" CDS 904125..904943 /locus_tag="SF0866" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706792.1" /db_xref="GeneID:1023836" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELADNGIIVGRDRLARLRKELRLHCKQKRKFRATTSSDHNLPGTPNLLNQ NFTPTAPNQVWVADLTYVATREGWLYLAGVKHVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA" misc_feature <904125..904916 /locus_tag="SF0866" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(904983..905354) /locus_tag="SF0867" /db_xref="GeneID:1027558" CDS complement(904983..905354) /locus_tag="SF0867" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706793.2" /db_xref="GeneID:1027558" /translation="MAHIQLVKQTSSGLLLPATPESCDFLHQIKIGEWIHADFKRVRN YAFHKRFFKLLQLGFDYWTPVGGAITPRERKLVSGFVDYLCESVGREHTPALSEAAEQ YLNTVATRRTRDTALLKSFEA" misc_feature complement(<904986..905342) /locus_tag="SF0867" /note="Protein of unknown function (DUF1367); Region: DUF1367; pfam07105" /db_xref="CDD:429295" gene complement(905393..905680) /locus_tag="SF0868" /db_xref="GeneID:1023855" CDS complement(905393..905680) /locus_tag="SF0868" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706794.1" /db_xref="GeneID:1023855" /translation="MKIEELREIFSENGLYAVRVENGAIVSHCRIRCLQSQQRKSGAV LFYFCNGLLTDGFILREDEFVTSLRVLKKIGFKAGFLLLLKNKLIYNLEQD" gene complement(905930..906142) /locus_tag="SF0868a" /db_xref="GeneID:16608310" CDS complement(905930..906142) /locus_tag="SF0868a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439234.1" /db_xref="GeneID:16608310" /translation="MLCTCRLASYMPKGKEKQAMKQQKAMLIALIVICLTVIVTALVT RKDLCEVRIRTGQTEVAVFVDYESRK" misc_feature complement(905945..906067) /locus_tag="SF0868a" /note="Hok/gef family; Region: HOK_GEF; pfam01848" /db_xref="CDD:426473" gene complement(906313..906879) /locus_tag="SF0869" /db_xref="GeneID:1023850" CDS complement(906313..906879) /locus_tag="SF0869" /note="Code: S; COG: COG1636" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706795.1" /db_xref="GeneID:1023850" /translation="MEALQASEIDYTIFFYNPNIHPQKEYLIRKDENIRFAEQHGVPF IDADYDTDNWFERAKGMEWEPERGIRCTMCFDMRFERTALYAAENGFSVISSSLGISR WKNMQQVNDCGRRAVAHYPGMVYWDYNWRKQGGSSRMIEISKREKFYQQEYCGCVYSL RDTNLHRKSQGRPLIKIGQLHYGKEEKE" misc_feature complement(906361..906879) /locus_tag="SF0869" /note="Epoxyqueuosine reductase QueH (tRNA modification) [Translation, ribosomal structure and biogenesis]; Region: QueH; COG1636" /db_xref="CDD:441243" gene complement(907147..907560) /locus_tag="SF0870a" /db_xref="GeneID:16608311" CDS complement(907147..907560) /locus_tag="SF0870a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439235.1" /db_xref="GeneID:16608311" /translation="MKLAIRLQLPLAFASKERSMEIKPEDELSNIVLFPIKEDDPRNQ VNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRL LRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE" gene complement(907561..907983) /locus_tag="SF0871" /db_xref="GeneID:1026184" CDS complement(907561..907983) /locus_tag="SF0871" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706797.1" /db_xref="GeneID:1026184" /translation="MAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVG RLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDG EIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL" misc_feature complement(907576..907983) /locus_tag="SF0871" /note="Bacterial protein of unknown function (DUF977); Region: DUF977; pfam06163" /db_xref="CDD:310626" gene complement(907998..908744) /locus_tag="SF0872" /pseudo /db_xref="GeneID:1023838" misc_feature complement(907998..908744) /locus_tag="SF0872" /note="Similar to Escherichia coli K12 DNA replication factor ref: NP_415878.1 (248 aa). BLAST with identity of 92% in 248 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(908890..909522) /locus_tag="SF0873" /db_xref="GeneID:1023845" CDS complement(908890..909522) /locus_tag="SF0873" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706798.1" /db_xref="GeneID:1023845" /translation="MASNWIKLEVITPDKPEIFRLAEILNIDPDAALGKVIRFWAWAD QQMIDGNADCNARGVTKSAIDRITFMSGFADALIQVGWLVENDGGLSLPNFERHNGKS SKKRAVTNERVTKIRELKRKGNAASVTQTDQKALPVEEEDLNTDLPLNPPRQKRASKK FEPEAIELPDWLPETLWHEWVRFRQALRKPIRTEQGDTGTGKIPSAGFYT" gene complement(909600..910022) /locus_tag="SF0874" /db_xref="GeneID:1023834" CDS complement(909600..910022) /locus_tag="SF0874" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706799.1" /db_xref="GeneID:1023834" /translation="MKIRHEHIESVLLALAAEKGQAWVANAITEEYLRQGGGELSLVP GKDWNNQQNIYHRWLKGETKAQREKIQKLIPAVLAILPRELRHRLCIFDTLERRALLA AQEALSTAIDAHDDAVQAVYRKAHFSGGGSPGDSVVVH" misc_feature complement(<909684..909878) /locus_tag="SF0874" /note="Putative bacterial toxin ydaT; Region: YdaT_toxin; pfam06254" /db_xref="CDD:368819" gene complement(910006..910233) /locus_tag="SF0875" /db_xref="GeneID:1023827" CDS complement(910006..910233) /locus_tag="SF0875" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator DicC" /protein_id="NP_706800.1" /db_xref="GeneID:1023827" /translation="MLKIDAIAFFGSKTKLANAAGVRLASIAAWGELVPEGRAMRLQE ASGGELQYDPKVYDEYRKAKRPGKVIHENQA" misc_feature complement(910009..910233) /locus_tag="SF0875" /note="DNA-binding transcriptional regulator DicC; Provisional; Region: PRK09744" /db_xref="CDD:137503" gene 910310..910717 /locus_tag="SF0876" /db_xref="GeneID:1023847" CDS 910310..910717 /locus_tag="SF0876" /note="Code: K; COG: COG1396" /codon_start=1 /transl_table=11 /product="transcriptional repressor DicA" /protein_id="NP_706801.1" /db_xref="GeneID:1023847" /translation="MKNETFGARLLHRRKKLKLSQAALGKLVKVAHVTISQWERDETQ PAGKRLFALSQALQCSPTWLLFGDEDKQPGEPIPDNQPAILTEDQKELLQLFDALPES EQKALLSEMRARVENFNKLFEELLKARKRSANK" misc_feature 910310..910714 /locus_tag="SF0876" /note="transcriptional repressor DicA; Reviewed; Region: PRK09706" /db_xref="CDD:182039" gene 910920..911075 /locus_tag="SF0877" /db_xref="GeneID:1023849" CDS 910920..911075 /locus_tag="SF0877" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706802.2" /db_xref="GeneID:1023849" /translation="MNTIDLGNNESPVYGVFPNQDGTFTAITYTKSKTFKTEAGARRW LGRHSGE" misc_feature 910920..911063 /locus_tag="SF0877" /note="Protein of unknown function (DUF1391); Region: DUF1391; pfam07151" /db_xref="CDD:462102" mobile_element complement(911511..912841) /mobile_element_type="insertion sequence:IS2" gene complement(911522..912427) /locus_tag="SF0878" /db_xref="GeneID:1023833" CDS complement(911522..912427) /locus_tag="SF0878" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_706803.1" /db_xref="GeneID:1023833" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(911525..912427) /locus_tag="SF0878" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(912385..912795) /locus_tag="SF0879" /db_xref="GeneID:1023841" CDS complement(912385..912795) /locus_tag="SF0879" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_706804.3" /db_xref="GeneID:1023841" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(912388..912750) /locus_tag="SF0879" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 913190..914146 /locus_tag="SF0880" /db_xref="GeneID:1023843" CDS 913190..914146 /locus_tag="SF0880" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706805.1" /db_xref="GeneID:1023843" /translation="MVWVGKPTVIVNWLTSPGGTRHRINKVHFGDERKEKMLNVAIEN QNGWNYSAPAPHKTGAGIATPTMTTAHNRAQAVFLCVKHSHIQIMVGRAGQPQGWPVS VVTGCSNPVRLTTHEIATSGGESFKLTIEAAIMATILTLSHPDATIENGRAVTTSVAV AEFFRKMHKNVIQKIETLECSPEFNRLNFKPVTYTDAKGEKRPMYQITKNGFVFLVMG FTGKKAAAFKEAYIAEFDRMEAELRQNNTPPADKMIPGDGRTLVVHFDKFGNVEFTET VPDGALVCTLETFRFYLEKQGWTLVNRGAIKNMTVEQLLSLK" misc_feature 913349..913621 /locus_tag="SF0880" /note="Ash protein family; Region: Phage_ASH; pfam10554" /db_xref="CDD:431354" misc_feature 913628..>913942 /locus_tag="SF0880" /note="Phage regulatory protein Rha [Mobilome: prophages, transposons]; Region: pRha; COG3646" /db_xref="CDD:442863" mobile_element 914596..915859 /mobile_element_type="insertion sequence:IS600" gene 914660..914962 /locus_tag="SF0881" /db_xref="GeneID:1023864" CDS 914660..914962 /locus_tag="SF0881" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706806.1" /db_xref="GeneID:1023864" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 914660..914932 /locus_tag="SF0881" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 914998..915816 /locus_tag="SF0882" /db_xref="GeneID:1023826" CDS 914998..915816 /locus_tag="SF0882" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706807.1" /db_xref="GeneID:1023826" /translation="MCQVFGVSRSGYCNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQIAA" misc_feature <914998..915789 /locus_tag="SF0882" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(915841..916485) /locus_tag="SF0883" /db_xref="GeneID:1023837" CDS complement(915841..916485) /locus_tag="SF0883" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VIII" /protein_id="NP_706808.1" /db_xref="GeneID:1023837" /translation="MSTKPLFLLRKAKKSSGEPDVVLWASDDFESTSTTLDYLLVKSG KKLSNYFKAVATNFPVVNDLPPEGEIDFTWSERYQLSKDSMTWELKPGAAPDDVHHQD NAQETKELAGGQEENAQADAHEDCQDCEVSVATLRFTQRLLHIFTYAAGDLKYLHHAT REQRKHITALEMDQENSYVQNLLLAIRGMAEPTTLDNAALLRLTDAIKAEVYWQ" misc_feature complement(915940..916482) /locus_tag="SF0883" /note="Enterobacterial exodeoxyribonuclease VIII; Region: Exonuc_VIII; pfam06630" /db_xref="CDD:284130" mobile_element complement(916786..918049) /mobile_element_type="insertion sequence:IS600" gene complement(916829..917647) /locus_tag="SF0884" /db_xref="GeneID:1023832" CDS complement(916829..917647) /locus_tag="SF0884" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706809.1" /db_xref="GeneID:1023832" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLQTSMSRKGNCYDNAPMESLWGTL KNESLSHYRFNNRDEAILVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA" misc_feature complement(916856..>917647) /locus_tag="SF0884" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(917683..917985) /locus_tag="SF0885" /db_xref="GeneID:1023871" CDS complement(917683..917985) /locus_tag="SF0885" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706810.1" /db_xref="GeneID:1023871" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(917713..917985) /locus_tag="SF0885" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 918051..918668 /locus_tag="SF0886" /db_xref="GeneID:1023835" CDS 918051..918668 /locus_tag="SF0886" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706811.2" /db_xref="GeneID:1023835" /translation="MSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFDDR DQAVPYTATADDVAPTGQRIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRT EQEAKPFTFEWNGRIWNAGPNSLGRLYPVVMAAKSDIVRDVMTWGDADNQQVKLSMPE LEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE" misc_feature 918330..918653 /locus_tag="SF0886" /note="Domain of unknown function (DUF4376); Region: DUF4376; pfam14301" /db_xref="CDD:433852" gene complement(918848..920658) /gene="ipaH_2" /locus_tag="SF0887" /pseudo /db_xref="GeneID:1023823" misc_feature complement(918848..920658) /gene="ipaH_2" /locus_tag="SF0887" /note="Similar to Shigella flexneri IpaH9.8 gb: AAC23714.1 (545 aa). BLAST with identity of 64% in 604 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo gene 921555..922550 /gene="ybhE" /locus_tag="SF0888" /db_xref="GeneID:1027557" CDS 921555..922550 /gene="ybhE" /locus_tag="SF0888" /note="Code: G; COG: COG2706" /codon_start=1 /transl_table=11 /product="6-phosphogluconolactonase" /protein_id="NP_706812.2" /db_xref="GeneID:1027557" /translation="MKQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVS PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESVLPGSPTHISTDHQGQFVFVGSYN AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDG HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTL DMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ PRGFNVDYSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAH" misc_feature 921558..922547 /gene="ybhE" /locus_tag="SF0888" /note="6-phosphogluconolactonase; Provisional; Region: PRK11028" /db_xref="CDD:182912" gene complement(922591..923607) /gene="ybhD" /locus_tag="SF0889" /pseudo /db_xref="GeneID:1026191" misc_feature complement(922591..923607) /gene="ybhD" /locus_tag="SF0889" /note="Similar to Escherichia coli K12 transcriptional regulator LYSR-type gi: 1786984 (339 aa). BLAST with identity of 97% in 338 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 923833..924780 /gene="ybhH" /locus_tag="SF0890" /db_xref="GeneID:1023868" CDS 923833..924780 /gene="ybhH" /locus_tag="SF0890" /note="Code: S; COG: COG2828" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706813.2" /db_xref="GeneID:1023868" /translation="MAIMGSGNDLEIDGIGGGNPLTSKVAIISRSSDPRADVDYLFAQ VIVHEQRVDTTPNCGNMLSGVGAFAIENGLIAATSPVTRVRIRNVNTGTFIEADVQTP NGVVEYEGSARIDGVPGTAAPVALTFLNAAGTKTGKVFPTDNQIDYFDDVPVTCIDMA MPVVIIPAEYLGKTGYELPAELDADKALLARIESIRLQAGKAMGLGDVSNMVIPKPVL ISPAQKGGAINVRYFMPHSCHRALAITGAIAISSSCALEGTVTRQIVPSVGYGNINIE HPSGALDVHLSNEGQDATTLRASVIRTTRKIFSGEVYLP" misc_feature 923833..924777 /gene="ybhH" /locus_tag="SF0890" /note="2-Methylaconitate cis-trans-isomerase PrpF (2-methyl citrate pathway) [Energy production and conversion]; Region: PrpF; cl42415" /db_xref="CDD:478184" gene 924919..926289 /gene="ybhI" /locus_tag="SF0891" /db_xref="GeneID:1023881" CDS 924919..926289 /gene="ybhI" /locus_tag="SF0891" /note="Code: P; COG: COG0471" /codon_start=1 /transl_table=11 /product="membrane pump protein" /protein_id="NP_706814.2" /db_xref="GeneID:1023881" /translation="MPAPAGLSELAWVLFGIYLAAIVGLVIKPFPEPVVLLIAVAASM VVVGNLSDGAFKTTAVLSGYSSGTTWLVFSAFTLSAAFVTTGLGKLIAYLLIGKIGNT MLGLGYVTVFLDLVLAPATPSNTARAGGIVLPIINSVAVALGSEPEKSPRRVGHYLMM SIYMVTKTTSYMFFTAMAGNILALKMINDILHLQISWGGWALAAGLPGIIMLLVTPLV IYTMYPPEIKKVDNKTIAKAGLAELGPMKIREKMLLGVFVLALLGWIFSKSLGVDEST VAIVVMATMLLLGIVTWEDVVKNKGGWNTLIWYGGIIGLSSLLSKVKFFEWLAEVFKN NLAFDGHGNVAFFVIIFLSIIVRYFFASGSAYIVAMLPVFAMLANVSGAPLMLTALAL LFSNSYGGMVTHYGGAAGPVIFGVGYNDIKSWWLVGAVLTILTFLVHITLGVWWWNML IGWNML" misc_feature 924919..926277 /gene="ybhI" /locus_tag="SF0891" /note="Sodium:sulfate symporter transmembrane region; Region: Na_sulph_symp; pfam00939" /db_xref="CDD:279307" misc_feature order(925030..925071,925114..925167,925240..925290, 925294..925302,925306..925350,925363..925365, 925387..925455,925537..925581,925675..925713, 925735..925779,925819..925875,925954..926001, 926083..926142,926203..926241) /gene="ybhI" /locus_tag="SF0891" /note="transmembrane helices; other site" /db_xref="CDD:238344" gene 926472..928652 /gene="ybhJ" /locus_tag="SF0892" /db_xref="GeneID:1023872" CDS 926472..928652 /gene="ybhJ" /locus_tag="SF0892" /note="Code: C; COG: COG1048" /codon_start=1 /transl_table=11 /product="hydratase" /protein_id="NP_706815.2" /db_xref="GeneID:1023872" /translation="MIKLSEKGVFLASNNEIIAEEHFTGEIKKEEAKKGTIAWSILSS HNTSGNMDKLKIKFDSLASHDITFVGIVQTAKASGMERFPLPYVLTNCHNSLCAVGGT INGDDHVFGLSAAQRYGGIFVPPHIAVIHQYMREMMAGGGKMILGSDSHTRYGALGTM AVGEGGGELVKQLLNDTWDIDYPGVVAVHLTGKPAPYVGPQDVALAIIGAVFKNGYVK NKVMEFVGPGVSALSTDFRNSVDVMTTETTCLSSVWQTDEEVHNWLALHGRGQDYCQL NPQPMAYYDGCISVDLSAIKPMIALPFHPSNVYEIDTLNQNLTDILREIEIESERVAH GKAKLSLLDKVENGRLKVQQGIIAGCSGGNYENVIAAANALRGQSCGNDTFSLAVYPS SQPVFMDLAKKGVVADLIGAGAIIRTAFCGPCFGAGDTPINNGLSIRHTTRNFPNREG SKPANGQMSAVALMDARSIAATAANGGYLTSASELDCWDNVPEYAFDVTPYKNRVYQG FVKGATQQPLIYGPNIKDWPELGALTDNIVLKVCSKILDEVTTTDELIPSGETSSYRS NPIGLAGNVSELTEVFARIKQIAGQEHIDPLQTEIGSMVYAVKPGDGSAREQAASCQR VIGGLANIAEEYATKRYRSNVINWGMLPLQMAEVPTFEVGDYIYIPGIKAALDNPGTT FKGYVIHEDAPVTEITLYMESLTAEEREIIKAGSLINFNKNRQM" misc_feature 926472..928643 /gene="ybhJ" /locus_tag="SF0892" /note="putative hydratase; Provisional; Region: PRK11413" /db_xref="CDD:183125" gene complement(928793..930076) /gene="ybhC" /locus_tag="SF0893" /db_xref="GeneID:1023858" CDS complement(928793..930076) /gene="ybhC" /locus_tag="SF0893" /codon_start=1 /transl_table=11 /product="acyl-CoA thioesterase" /protein_id="NP_706816.1" /db_xref="GeneID:1023858" /translation="MNTFSVSRLALALAFGVTLTACSSTPPDQRPSDQTAPGTSSRPI LSAKEALNFDAQHYFASLTPGAAAWNPSPITLPAQPDFVVGPAGTQGVTHTTIQAAVD AAIIKRTNKRQYIAVMPGEYQGTVYVPAAPGGITLYGTGEKPIDVKIGLSLDGGMSPA DWRHDVNPRGKYMPGKPAWYMYDSCQSKRSDSIGVLCSAVFWSQNNGLQLQNLTIENT LGDSVDAGNHPAVALRTDGDQVQINNVNILGRQNTFFVTNSGVQNRLETNRQPRTLVT NSYIEGDVDIVSGRGAVVFDNTEFRVVNSRTQQEAYVFAPATLSNIYYGFLAVNSRFN ASGDGVAQLGRSLDVDANTNGQVVIRDSAINEGFNTAKPWADAVISNRPFAGNTGSVD DNDEIQRNLNDTNYNRMWEYNNRGVGSKVVAEEKK" misc_feature complement(928817..930076) /gene="ybhC" /locus_tag="SF0893" /note="putative acyl-CoA thioester hydrolase; Region: PRK10531" /db_xref="CDD:236709" mobile_element complement(931150..932413) /mobile_element_type="insertion sequence:IS600" gene complement(931193..932011) /locus_tag="SF0895" /db_xref="GeneID:1023877" CDS complement(931193..932011) /locus_tag="SF0895" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706818.1" /db_xref="GeneID:1023877" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA" misc_feature complement(931220..>932011) /locus_tag="SF0895" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(932047..932349) /locus_tag="SF0896" /db_xref="GeneID:1023828" CDS complement(932047..932349) /locus_tag="SF0896" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706819.1" /db_xref="GeneID:1023828" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(932077..932349) /locus_tag="SF0896" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element complement(932413..932594) /note="partial" /mobile_element_type="insertion sequence:IS1" gene complement(932758..933498) /gene="pflA" /locus_tag="SF0897" /db_xref="GeneID:1023839" CDS complement(932758..933498) /gene="pflA" /locus_tag="SF0897" /note="Code: O; COG: COG1180" /codon_start=1 /transl_table=11 /product="pyruvate formate lyase-activating enzyme 1" /protein_id="NP_706820.2" /db_xref="GeneID:1023839" /translation="MSVIGRIHSFESCGTVDGPGIRFITFFQGCLMRCLYCHNRDTWD THGGKEVTVEDLMKEVVTYRHFMNASGGGVTASGGEAILQAEFVRDWFRACKKEGIHT CLDTNGFVRRYDPVIDELLEVTDLVMLDLKQMNDEIHQNLVGVSNHRTLEFAKYLANK NVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIELLPYHELGKHKWVAMGEEYK LDGVKPPKKETMERVKGILEQYGHKVMF" misc_feature complement(932761..933498) /gene="pflA" /locus_tag="SF0897" /note="pyruvate formate lyase 1-activating protein; Region: pflA; PRK11145" /db_xref="CDD:182994" gene complement(933690..935972) /gene="pflB" /locus_tag="SF0898" /db_xref="GeneID:1023824" CDS complement(933690..935972) /gene="pflB" /locus_tag="SF0898" /note="Code: C; COG: COG1882" /codon_start=1 /transl_table=11 /product="formate acetyltransferase 1" /protein_id="NP_706821.1" /db_xref="GeneID:1023824" /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL AGATEATTTLWDKVMEGVKLENRTHAPVDFDTAVASTITSHDAGYINKALEKVVGLQT EAPLKRALIPFGGIKMIEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKYAQFTSLQADLENGVNLEQTI RLREEIAEQHRALGQMKEMAAKYGYDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS FGRTSTFLDVYIERDLKAGKITEQEAQEMVDHLVMKLRMVRFLRTPEYDELFSGDPIW ATESIGGMGLDGRTLVTKNSFRFLNTLYTMGPSPEPNMTILWSEKLPLNFKKFAAKVS IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG VDEKLKMQVGPKSEPIKGDLLSYDEVMERMDHFMDWLAKQYITALNIIHYMHDKYSYE ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ FGNNDPRVDDLAVDLVERFMKKIQKLHTYRDAIPTQSVLTITSNVVYGKKTGNTPDGR RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMENPEKYPQLTIRVSGYAVRF NSLTKEQQQDVITRTFTQSM" misc_feature complement(933705..935942) /gene="pflB" /locus_tag="SF0898" /note="Pyruvate formate lyase 1; Region: PFL1; cd01678" /db_xref="CDD:153087" misc_feature complement(order(935487..935492,935499..935501, 935514..935516,935520..935525,935532..935537, 935619..935624)) /gene="pflB" /locus_tag="SF0898" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:153087" misc_feature complement(order(934152..934154,934158..934160, 934665..934667,934674..934676,934716..934718, 934971..934973,934989..934991,935151..935156, 935442..935444)) /gene="pflB" /locus_tag="SF0898" /note="active site" /db_xref="CDD:153087" misc_feature complement(order(933768..933770,934713..934718)) /gene="pflB" /locus_tag="SF0898" /note="catalytic residues [active]" /db_xref="CDD:153087" misc_feature complement(933765..933779) /gene="pflB" /locus_tag="SF0898" /note="glycine loop [active]" /db_xref="CDD:153087" gene complement(936027..936884) /gene="focA" /locus_tag="SF0899" /db_xref="GeneID:1023861" CDS complement(936027..936884) /gene="focA" /locus_tag="SF0899" /note="Code: P; COG: COG2116" /codon_start=1 /transl_table=11 /product="formate transporter" /protein_id="NP_706822.2" /db_xref="GeneID:1023861" /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF ISIAFVFYITATTGTGTMPFGMAKLVGGICFSLGLILCVVCGADLFTSTVLIVVAKAS GRITWCQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHT FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP MGIVIRDFASPEFWTAVGSAPENFSHLTVMNFITDNLIPVTIGNIIGGGLLVGLTYWV IYLRENDHH" misc_feature complement(936030..936884) /gene="focA" /locus_tag="SF0899" /note="formate transporter; Provisional; Region: PRK10805" /db_xref="CDD:182746" gene complement(937290..939050) /gene="ycaO" /locus_tag="SF0900" /db_xref="GeneID:1023880" CDS complement(937290..939050) /gene="ycaO" /locus_tag="SF0900" /note="Code: S; COG: COG1944" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706823.2" /db_xref="GeneID:1023880" /translation="MTQTFIPGKDAALEDSIARFQQKLSDLGFQIEEASWLNPVPNVW SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETIANGPFVH YPNEKWFPLSENDDVPEGLLDDRLRAFYDPENELTGSMLIDLQSGNEDRGICGLPFTR QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE IPADVLARYPAVVEAIETLETEGFPIFAYDGSLGGQYPVICVVLFNPANGTCFASFGA HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL FKQDADYPFVDWNFSGTTEEEFATLMAIFNKEDKEVYIADYEHLGVYACRIIVPGMSD IYPAEDLWLANNSMGSHLRETILSLPGSEWEKEDYLNLIEQLDEEGFDDFTRVRELLG LATGSDNGWYTLRIGELKAMLALAGGDLEQALVWTEWTMEFNSSVFSPERANYYRCLQ TLLLLAQEEDRQPLQYLNAFVRMYGADAVEAASAAMSGEAAFYGLQPVDSDLHAFAAH QSLLKAYEKLQRAKAAFWAK" misc_feature complement(937317..939041) /gene="ycaO" /locus_tag="SF0900" /note="30S ribosomal protein S12 methylthiotransferase accessory factor YcaO; Region: YcaO_for_S12; NF040716" /db_xref="CDD:468680" gene 939180..939806 /locus_tag="SF0901" /pseudogene="unknown" /db_xref="GeneID:1026193" gene 940005..941093 /gene="serC" /locus_tag="SF0902" /db_xref="GeneID:1023863" CDS 940005..941093 /gene="serC" /locus_tag="SF0902" /note="Code: HE; COG: COG1932" /codon_start=1 /transl_table=11 /product="3-phosphoserine/phosphohydroxythreonine aminotransferase" /protein_id="NP_706825.1" /db_xref="GeneID:1023863" /translation="MAQIFNFSSGPAMLPAEVLKQAQQELRDWNGLGTSVMEVSHRGK EFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNILGDKTTADYVDAGYW AASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQLSDNAAYMHYCPNETIDGIAID ETPDFGKDVVVAADFSSTILSRPIDVSRYGVIYAGAQKNIGPAGLTIVIVREDLLGKA NIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLKANGGVAEMDKINQQKAELL YGVIDNSDFYRNDVAKANRSRMNVPFQLADSALDKLFLEESFAAGLHALKGHRVVGGM RASIYNAMPLEGVKALTDFMVEFERRHG" misc_feature 940005..941090 /gene="serC" /locus_tag="SF0902" /note="3-phosphoserine/phosphohydroxythreonine transaminase; Region: PRK05355" /db_xref="CDD:235428" misc_feature order(940020..940022,940035..940040,940044..940046, 940221..940226,940233..940235,940329..940331, 940338..940343,940611..940613,940719..940727) /gene="serC" /locus_tag="SF0902" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99736" misc_feature order(940029..940031,940230..940235,940308..940310, 940461..940463,940524..940526,940593..940598, 940986..940988) /gene="serC" /locus_tag="SF0902" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:99736" misc_feature order(940227..940235,940308..940310,940461..940463, 940524..940526,940530..940532,940593..940598) /gene="serC" /locus_tag="SF0902" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99736" misc_feature 940596..940598 /gene="serC" /locus_tag="SF0902" /note="catalytic residue [active]" /db_xref="CDD:99736" gene 941164..942447 /gene="aroA" /locus_tag="SF0903" /db_xref="GeneID:1023875" CDS 941164..942447 /gene="aroA" /locus_tag="SF0903" /note="Code: E; COG: COG0128" /codon_start=1 /transl_table=11 /product="3-phosphoshikimate 1-carboxyvinyltransferase" /protein_id="NP_706826.1" /db_xref="GeneID:1023875" /translation="MESLTLQPIARVDGTINLPGSKSVSNRALLLAALAHGKTVLTNL LDSDDVRHMLNALTALGLSYTLSADRTRCEIIGNGGPLHAEGALELFLGNAGTAMRPL AAALCLDSNDIVLTGEPRMKERPIGHLVDALRLGGAKITYLEQENYPPLRLQGGFTGG NVDVDGSVSSQFLTALLMTAPLAPEDTVIRIKGDLVSKPYIDITLNLMKTFGVEIENQ HYQQFVVKGGQSYQSPGTYLVEGDASSASYFLAAAAIKGGTVKVTGIGRNSMQGDIRF ADVLEKMGATICWGDDYISCTRGELNAIDMDMNHIPDAAMTIATAALFAKGTTTLRNI YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPEKLNFAEIATYNDHRMAMCFS LVALSDTPVTILDPKCTAKTFPDYFEQLARISQAA" misc_feature 941197..942432 /gene="aroA" /locus_tag="SF0903" /note="Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer; Region: EPT-like; cd01554" /db_xref="CDD:238795" misc_feature order(941215..941226,941878..941889) /gene="aroA" /locus_tag="SF0903" /note="hinge; other site" /db_xref="CDD:238795" misc_feature order(941227..941232,941242..941244,941452..941454, 941533..941535,941671..941676,941761..941763, 942100..942102,942319..942321,942394..942396) /gene="aroA" /locus_tag="SF0903" /note="active site" /db_xref="CDD:238795" mobile_element 942506..943933 /mobile_element_type="insertion sequence:IS4" gene 942573..943919 /locus_tag="SF0904" /db_xref="GeneID:1023867" CDS 942573..943919 /locus_tag="SF0904" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_706827.1" /db_xref="GeneID:1023867" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLAPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMVLERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRMFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIGQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSNRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMSDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature 942663..943661 /locus_tag="SF0904" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene 944055..944819 /gene="ycaL" /locus_tag="SF0905" /db_xref="GeneID:1023898" CDS 944055..944819 /gene="ycaL" /locus_tag="SF0905" /note="Code: O; COG: COG0501" /codon_start=1 /transl_table=11 /product="heat shock protein" /protein_id="NP_706828.2" /db_xref="GeneID:1023898" /translation="MKNTKLLLAIATSAALLTGCQNTHGIDTNMAISSGLNAYKAATL SDADAKAIANQGCAEMDSGNQVASKSSKYGKRLAKIAKALGNNINGTPVNYKVYMTSD VNAWAMANGCVRVYSGLMDMMNDNEIEGVLGHELGHVALGHSLAEMKASYAIVAARDA ISATSGVASQLSRSQLGDIAEGAINAKYSRDKESEADDFSFDLLKKRGISTQGLVGSF EKLASLDGGRTQSMFDSHPPSTERAQHIRDRIASGK" misc_feature 944154..944801 /gene="ycaL" /locus_tag="SF0905" /note="Peptidase M48C Ste24p loiP-like, integral membrane protein; Region: M48C_loiP_like; cd07334" /db_xref="CDD:320693" misc_feature order(944454..944459,944466..944468,944631..944633, 944643..944645,944760..944762) /gene="ycaL" /locus_tag="SF0905" /note="putative active site [active]" /db_xref="CDD:320693" misc_feature order(944454..944456,944466..944468,944631..944633, 944760..944762) /gene="ycaL" /locus_tag="SF0905" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:320693" gene 944992..945675 /gene="cmk" /locus_tag="SF0906" /db_xref="GeneID:1023896" CDS 944992..945675 /gene="cmk" /locus_tag="SF0906" /note="Code: F; COG: COG0283" /codon_start=1 /transl_table=11 /product="cytidylate kinase" /protein_id="NP_706829.1" /db_xref="GeneID:1023896" /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA LAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQ VAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML QLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQLIEKALQ YARQKLALA" misc_feature 945007..945666 /gene="cmk" /locus_tag="SF0906" /note="Cytidylate kinase [Nucleotide transport and metabolism]; Region: Cmk; COG0283" /db_xref="CDD:440052" gene 945786..947459 /gene="rpsA" /locus_tag="SF0907" /db_xref="GeneID:1023876" CDS 945786..947459 /gene="rpsA" /locus_tag="SF0907" /note="Code: J; COG: COG0539" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S1" /protein_id="NP_706830.1" /db_xref="GeneID:1023876" /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL HITDMAWKRVKHPSEIVNVGDEITVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD IDEERRRISLGLKQCKANPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGV DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE" misc_feature 945786..947456 /gene="rpsA" /locus_tag="SF0907" /note="30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299" /db_xref="CDD:235775" gene 947619..947903 /gene="ihfB" /locus_tag="SF0908" /db_xref="GeneID:1023862" CDS 947619..947903 /gene="ihfB" /locus_tag="SF0908" /note="Code: L; COG: COG0776" /codon_start=1 /transl_table=11 /product="integration host factor subunit beta" /protein_id="NP_706831.1" /db_xref="GeneID:1023862" /translation="MTKSELIERLATQQSHIPAKTVEDAVKEMLEHMASTLAQGERIE IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG" misc_feature 947619..947900 /gene="ihfB" /locus_tag="SF0908" /note="integration host factor subunit beta; Reviewed; Region: ihfB; PRK00199" /db_xref="CDD:178925" misc_feature order(947625..947627,947634..947636,947643..947648, 947655..947657,947667..947669,947679..947681, 947688..947696,947700..947729,947739..947756, 947760..947762,947841..947846,947850..947852, 947856..947858,947862..947864,947874..947876) /gene="ihfB" /locus_tag="SF0908" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:259858" misc_feature order(947625..947630,947748..947756,947760..947762, 947778..947780,947784..947789,947853..947855, 947859..947861,947865..947870) /gene="ihfB" /locus_tag="SF0908" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:259858" gene 948033..950369 /gene="ycaI" /locus_tag="SF0909" /pseudo /db_xref="GeneID:1023848" misc_feature 948033..950369 /gene="ycaI" /locus_tag="SF0909" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787142 (781 aa). BLAST with identity of 98% in 779 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 950406..952154 /gene="msbA" /locus_tag="SF0910" /db_xref="GeneID:1023860" CDS 950406..952154 /gene="msbA" /locus_tag="SF0910" /note="Code: Q; COG: COG1132" /codon_start=1 /transl_table=11 /product="lipid transporter ATP-binding/permease" /protein_id="NP_706832.1" /db_xref="GeneID:1023860" /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGVALILNAASDTFM LSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMILRGITSYVSSYCISWVSGKVVMTMRR RLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM FYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVL IFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM DNLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRV IERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF YDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQI EEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLL EHRGVYAQLHKMQFGQ" misc_feature 950406..952151 /gene="msbA" /locus_tag="SF0910" /note="lipid A ABC transporter ATP-binding protein/permease MsbA; Region: PRK11176" /db_xref="CDD:183016" gene 952151..953137 /gene="lpxK" /locus_tag="SF0911" /db_xref="GeneID:1023856" CDS 952151..953137 /gene="lpxK" /locus_tag="SF0911" /note="Code: N; COG: COG1663" /codon_start=1 /transl_table=11 /product="tetraacyldisaccharide 4'-kinase" /protein_id="NP_706833.1" /db_xref="GeneID:1023856" /translation="MIEKIWSGESPLWRLLLPLSWLYGLVSGAIRLCYKLKLKRAWRA PVPVVVVGNLTAGGNGKTPVVVWLVEQLQQRGIRVGVVSRGYGGKAESYPLLLSADTT TAQAGDEPVLIYQRTDAPVAVSPVRSDAVKAILAQHPDVQIIVTDDGLQHYRLARDVE IVVIDGVRRFGNGWWLPAGPMRERAGRLKSVDAVIVNGGVPRSGEIPMHLLPGQAVNL RTGTRCDVAQLEHVVAMAGIGHPPRFFATLKMCGVQPEKCVPLADHQSLNHADVSALV SAGQTLVMTEKDAVKCRAFAEENWWYLPVDAQLSGDEPAKLLTQLTSLASGN" misc_feature 952151..953119 /gene="lpxK" /locus_tag="SF0911" /note="tetraacyldisaccharide 4'-kinase; Reviewed; Region: lpxK; PRK00652" /db_xref="CDD:234808" gene 953174..954406 /gene="ycaQ" /locus_tag="SF0912" /db_xref="GeneID:1023873" CDS 953174..954406 /gene="ycaQ" /locus_tag="SF0912" /note="Code: S; COG: COG3214" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706834.1" /db_xref="GeneID:1023873" /translation="MSLPHLSLADARNLHLAAQGLLNKPRRRASLEDIPATISRMSLL QIDTINIVARSPYLVLFSRLGNYPAQWLDESLARGELMEYWAHEACFMPRSDFRLIRH RMLAPEKMGWKYKDAWMQEHEAEIAQLIQHIHDKGPVRSADFEHPRKGASGWWEWKPH KRHLEGLFTAGKVMVIERRNFQRVYDLTHRVMPDWDDERDLVSQTEAEIIMLDNSARS LGIFREQWLADYYRLKRPALAAWREARAEQQQIIAVHVEKLGNLWLHADLLPLLERAL AGKLTATHSAVLSPFDPVVWDRKRAEQLFDFSYRLECYTPAPKRQYGYFVLPLLHRGQ LVGRMDAKMHRQTGILEVISLWLQEGIKPTTMLQKGLRQAITDFASWQQATRVTLGRC PQGLFTDCRTGWEIDPVA" misc_feature 953174..954388 /gene="ycaQ" /locus_tag="SF0912" /note="DNA glycosylase YcaQ, repair of DNA interstrand crosslinks [Replication, recombination and repair]; Region: YcaQ; COG3214" /db_xref="CDD:442447" gene 954458..954640 /gene="ycaR" /locus_tag="SF0913" /db_xref="GeneID:1023852" CDS 954458..954640 /gene="ycaR" /locus_tag="SF0913" /note="Code: S; COG: COG2835" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706835.1" /db_xref="GeneID:1023852" /translation="MDHRLLEIIACPVCNGKLWYNQEKQELICKLDNLAFPLRDGIPV LLETEARVLTADESKS" misc_feature 954458..954637 /gene="ycaR" /locus_tag="SF0913" /note="protein YcaR; Region: PRK11827" /db_xref="CDD:183328" gene 954637..955383 /gene="kdsB" /locus_tag="SF0914" /db_xref="GeneID:1023904" CDS 954637..955383 /gene="kdsB" /locus_tag="SF0914" /note="Code: M; COG: COG1212" /codon_start=1 /transl_table=11 /product="3-deoxy-manno-octulosonate cytidylyltransferase" /protein_id="NP_706836.1" /db_xref="GeneID:1023904" /translation="MSFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAER IIVATDHDDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEP MIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATI PWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQASPLEHIEMLEQLRVLWYG EKIHVAVAQEVPGTGVDTPEDLERVRAEMR" misc_feature 954637..955380 /gene="kdsB" /locus_tag="SF0914" /note="3-deoxy-manno-octulosonate cytidylyltransferase; Provisional; Region: PRK05450" /db_xref="CDD:235473" misc_feature order(954658..954666,954778..954780,954859..954861, 954928..954930,954934..954936) /gene="kdsB" /locus_tag="SF0914" /note="Ligand binding site [active]" /db_xref="CDD:133010" misc_feature order(955000..955002,955051..955053,955069..955077, 955093..955098,955102..955122,955165..955167, 955240..955245,955252..955260,955279..955290) /gene="kdsB" /locus_tag="SF0914" /note="oligomer interface [active]" /db_xref="CDD:133010" gene 955537..956430 /locus_tag="SF0915" /db_xref="GeneID:1023859" CDS 955537..956430 /locus_tag="SF0915" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706837.1" /db_xref="GeneID:1023859" /translation="MEQLRAELSHLLGEKLSRIECVNEKADTALWALYDSQGNPMPLM ARSFSTPGKARQLAWKTTMLARSGTVRMPTIYGVMTHEEHPGPDVLLLERMRGVSVEA PARTPERWEQLKDQIVEALLAWHRQDSRGCVGAVDNTQENFWPSWYRQHVEVLWTTLN QFNNTGLTMQDKRILFRTRECLPALFEGFNDNCVLIHGNFCLRSMLKDSRSDQLLAMV GPGLMLWAPREYELFRLMDNSLAEDLLWSYLQRAPVAESFIWRRWLYVLWDEVAQLVN TGRFSRRNFDLASKSLLPWLA" misc_feature 955537..956427 /locus_tag="SF0915" /note="hypothetical protein; Provisional; Region: PRK10593" /db_xref="CDD:182575" gene complement(956407..957186) /gene="ycbC" /locus_tag="SF0916" /db_xref="GeneID:1023894" CDS complement(956407..957186) /gene="ycbC" /locus_tag="SF0916" /note="Code: S; COG: COG1434" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706838.2" /db_xref="GeneID:1023894" /translation="MLFTLKKVIGNMLLPLPLMLLIIGAGLALLWFSRFQKTGKIFIS IGWLALLLLSLQPVADRLLRPIESTYPTWNNSQKVDYIVVLGGGYTWNPQWAPSSNLI NNSLPRLNEGIRLWRENPGSKLIFTGGVAKTNTVSTAEVGARVAQSLGVPREQIITLD LPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQQEGLNPLPAPANQLAIDSPL NPWERAIPSPVWLMHSDRVGYETLGRIWQWLKGPSGEPRQE" misc_feature complement(956410..957186) /gene="ycbC" /locus_tag="SF0916" /note="envelope biogenesis factor ElyC; Region: PRK10494" /db_xref="CDD:236702" misc_feature complement(order(956611..956613,956620..956622, 956632..956634,956683..956685,956692..956694)) /gene="ycbC" /locus_tag="SF0916" /note="putative active site [active]" /db_xref="CDD:99750" gene 957322..958107 /gene="smtA" /locus_tag="SF0917" /db_xref="GeneID:1023854" CDS 957322..958107 /gene="smtA" /locus_tag="SF0917" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="S-adenosyl-L-methionine-dependent methyltransferase" /protein_id="NP_706839.2" /db_xref="GeneID:1023854" /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLAEMGPQ KLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAA QDVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNM VAGNFDYVQAGMPKKKKRTLSPDYPRDPAQVYLWLEEAGWQIMGKTGVRVFHDYLREK YQQRDCYEALLELETRYCRQEPYITLGRYIHVTARKPQSKDKV" misc_feature 957322..958086 /gene="smtA" /locus_tag="SF0917" /note="tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM; Region: PRK11036" /db_xref="CDD:182918" gene 958104..959426 /gene="mukF" /locus_tag="SF0918" /db_xref="GeneID:1023853" CDS 958104..959426 /gene="mukF" /locus_tag="SF0918" /note="Code: D; COG: COG3006" /codon_start=1 /transl_table=11 /product="condesin subunit F" /protein_id="NP_706840.1" /db_xref="GeneID:1023853" /translation="MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLD GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAEEGGDEFHWHRNVYAPL KYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG YDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDEPWALTYANADRLLDMRDEEMALR DEEVTGELPEDLEYEEFNEIREQLAAIIEEQLAVYKTRQVPLDLGLVVREYLSQYPRA RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY" misc_feature 958104..959423 /gene="mukF" /locus_tag="SF0918" /note="Chromosome condensin MukBEF, kleisin-like MukF subunit [Cell cycle control, cell division, chromosome partitioning]; Region: MukF; COG3006" /db_xref="CDD:442243" gene 959434..960111 /gene="mukE" /locus_tag="SF0919" /db_xref="GeneID:1023907" CDS 959434..960111 /gene="mukE" /locus_tag="SF0919" /note="Code: D; COG: COG3095" /codon_start=1 /transl_table=11 /product="condesin subunit E" /protein_id="NP_706841.2" /db_xref="GeneID:1023907" /translation="MPVKLAQALANPLFPALDSALRSGRHIGLDELDNHAFLMDFQEY LEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYLYLSPERLAN EGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLNRLRRLGMVW FMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQLNDETEESQ PDSGEEE" misc_feature 959434..960108 /gene="mukE" /locus_tag="SF0919" /note="Chromosome condensin MukBEF, MukE localization factor [Cell cycle control, cell division, chromosome partitioning]; Region: MukE; COG3095" /db_xref="CDD:442329" gene 960111..964571 /gene="mukB" /locus_tag="SF0920" /db_xref="GeneID:1023891" CDS 960111..964571 /gene="mukB" /locus_tag="SF0920" /note="Code: D; COG: COG3096" /codon_start=1 /transl_table=11 /product="cell division protein MukB" /protein_id="NP_706842.1" /db_xref="GeneID:1023891" /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLPLNELKDKLEAM EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR DYLLPENSGVRKAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLISEATNYVAADYMR HANERRVHLDKALEFRRELHTSRQQLAAEQYKHVDMARELAEHNGAEGDLEADYQAAS DHLNLVQTALRQQEKIERYEVDLDELQIRLEEQNEVVAEAIERQEENEARAEAAELEV DELKSQLADYQQALDVQQTRAIQYNQAIAALNRAKELCHLPDLTADSAAEWLETFQAK ELEATEKMLSLEQKMSMAQTAHSQFEQAYQLVVAINGPLARNEAWDVARELLREGVDQ RHLAEQVQPLRMRLSELEQRLREQQEAERLLADFCKRQGKNFDIDELEALHQELEARI ASLSDSVSNAREERMALRQEQEQLQSRIQSLMQRAPVWLAAQNSLNQLSEQCGEEFSS SQDVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGSEDQRLNALAERFG GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQVTEHLEGLTDCPEDLYLIEGD PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPEVPLFGRAARESRIESLHAEREVLS ERFATLSFDVQKTQRLHQAFSRFIGSHLAVAFESDPEAEIRQLNSRRVELERALSNHE NDNQQQRIQFEQAKEGVTALNRILPRLNLLADDSLADRVDEIRERLDEAQEAARFVQQ FGNQLAKLEPIVSVLQSDPEQFEQLKEDYAYSQQMQRDARQQAFALTEVVQRRAHFSY SDSAEMLSGNSDLNEKLRERLEQAEAERTRAREALRGHAAQLSQYNQVLASLKSSYDT KKELLNDLQRELQDIGVRADSGAEERARIRRDELHAQLSNNRSRRNQLEKALTFCEAE MDNLTRKLRKLERDYFEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADDL RSMSDKALGALRLAVADNEHLRDVLRMSEDPKRPERKIQFFVAVYQHLRERIRQDIIR TDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQGL QNVSFGQVNSVRLNVNVRETHAMLLDVLSEQHEQHQDLFNSNRLTFSEALAKLYQRLN PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL VMVVQSWEDESRRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPE NISPEKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLLGRDEAPSQAS" misc_feature 960114..964520 /gene="mukB" /locus_tag="SF0920" /note="Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning]; Region: MukB; COG3096" /db_xref="CDD:442330" mobile_element 964649..966076 /mobile_element_type="insertion sequence:IS4" gene 964716..966062 /locus_tag="SF0921" /db_xref="GeneID:1023879" CDS 964716..966062 /locus_tag="SF0921" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_706843.1" /db_xref="GeneID:1023879" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature 964806..965804 /locus_tag="SF0921" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene 966270..968117 /gene="ycbB" /locus_tag="SF0922" /db_xref="GeneID:1027560" CDS 966270..968117 /gene="ycbB" /locus_tag="SF0922" /note="Code: S; COG: COG2989" /codon_start=1 /transl_table=11 /product="murein L,D-transpeptidase" /protein_id="NP_706844.1" /db_xref="GeneID:1027560" /translation="MLLNMMCGRRLSAISLCLAVTFAPLFNAQADEPEVIPGDSPVAV SEQGEALPQAQATAIMAGIQPLPEGAAEKARTQIESQLPAGYKPVYLNQLQLLYAARD MQPMWENRDAVKAFQQQLAEVAIAGFQPQFNKWVELLTDPGVNGMARDVVLSDAMMGY LHFIANIPIKGTRWLYSSKPYALSTPPLSVINQWQLALDKGQLPTFVAGLAPQHPQYA AMHESLLALLSDTKPWPQLTGKATLRPGQWSNDVPALREILQRTGMLDGGPKITLPGD DTPTDAVVSPSAVTVETAETKPMDKQTTSRSKPAPAVRAAYDNELVEAVKRFQAWQGL GADGAIGPATRDWLNVTPAQRAGVLALNIQRLRLLPTELSTGIMVNIPAYSLLYYQNG NQVLDSRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVRNDPGYLESH GYTVMRGWNSREAIDPWEVDWSTITASNLPFRFQQAPGPRNSLGRYKFNMPSSEAIYL HDTPNHNLFKRDTRALSSGCVRVNKASDLANMLLQDAGWNDKRISDALKQGDTRYVNI RQSIPVNLYYLTAFVGADDRTQYRTDIYNYDLPARSSSQIVSKAEQLIR" misc_feature 966270..968114 /gene="ycbB" /locus_tag="SF0922" /note="murein L,D-transpeptidase; Provisional; Region: PRK10594" /db_xref="CDD:236723" gene 968298..968846 /gene="ycbK" /locus_tag="SF0923" /db_xref="GeneID:1026200" CDS 968298..968846 /gene="ycbK" /locus_tag="SF0923" /note="Code: S; COG: COG3108" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706845.2" /db_xref="GeneID:1026200" /translation="MDKFDANRRKLLALGGVALGAAILPTPAFATLSTPRPRILTLNN LHTGESIKAEFFDGRGYIQEELAKLNHFFRDYRANKIKSIDPGLFDQLYRLQGLLGTR KPVQLISGYRSIDTNNELRARSRGVAKKSYHTKGQAMDFHIEGIALSNIRKAALSMRA GGVGYYPRSNFVHIDTGPARHW" misc_feature 968394..968843 /gene="ycbK" /locus_tag="SF0923" /note="Peptidase M15; Region: Peptidase_M15_3; cl42048" /db_xref="CDD:455393" gene 968873..969520 /gene="ycbL" /locus_tag="SF0924" /db_xref="GeneID:1023865" CDS 968873..969520 /gene="ycbL" /locus_tag="SF0924" /note="Code: R; COG: COG0491" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706846.1" /db_xref="GeneID:1023865" /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDD SGLTLMQILLTHGHLDHVGAAAELAQHYGVPVFGPEKEDEFWLQGLPAQSRMFGLEEC QPLTPDRWLNEGDTISIGNVTLQVLHCPGHTPGHVVFFDDRAKLLISGDVIFKGGVGR SDFPRGDHNQLISSIKDKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQDEMPVW" misc_feature 968879..969448 /gene="ycbL" /locus_tag="SF0924" /note="Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain; Region: YcbL-like_MBL-fold; cd07737" /db_xref="CDD:293823" misc_feature order(969038..969040,969044..969046,969050..969055, 969266..969271,969323..969325,969446..969448) /gene="ycbL" /locus_tag="SF0924" /note="putative active site [active]" /db_xref="CDD:293823" gene complement(969743..970933) /gene="aspC" /locus_tag="SF0925" /db_xref="GeneID:1023890" CDS complement(969743..970933) /gene="aspC" /locus_tag="SF0925" /note="Code: E; COG: COG1448" /codon_start=1 /transl_table=11 /product="aromatic amino acid aminotransferase" /protein_id="NP_706847.1" /db_xref="GeneID:1023890" /translation="MFENITAAPADPILGLADLFRADERPGKINLGIGVYKDETGKTP VLTSVKKAEQYLLENETTKNYLGIDGILEFGRCTQELLFGKGSALINDKRARTAQTPG GTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFD ALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFA RGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSEIVDRAFSQMK AAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA NRDFSFIIKQNGMFSFSGLTKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCESI VAVL" misc_feature complement(969746..970933) /gene="aspC" /locus_tag="SF0925" /note="aromatic amino acid transaminase; Region: PRK09257" /db_xref="CDD:181731" misc_feature complement(order(970172..970174,970196..970201, 970205..970207,970292..970294,970385..970387, 970544..970546,970622..970630)) /gene="aspC" /locus_tag="SF0925" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(970055..970057,970064..970066, 970172..970180,970313..970315,970514..970516, 970619..970621)) /gene="aspC" /locus_tag="SF0925" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(970196..970198) /gene="aspC" /locus_tag="SF0925" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 970932..971102 /locus_tag="SF0925a" /db_xref="GeneID:16608312" CDS 970932..971102 /locus_tag="SF0925a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439236.1" /db_xref="GeneID:16608312" /translation="MTRFHYGYRREVRYQGNGRFTKFQLLLMKTQAVFARREIALEGI KKTGPTSCFFGI" gene complement(971118..972206) /gene="ompF" /locus_tag="SF0926" /db_xref="GeneID:1023895" CDS complement(971118..972206) /gene="ompF" /locus_tag="SF0926" /note="Code: M; COG: COG3203" /codon_start=1 /transl_table=11 /product="outer membrane protein F" /protein_id="NP_706848.1" /db_xref="GeneID:1023895" /translation="MMKRNILAVIVPALLVAGTANAAEIYNKDGNKVDLYGKTVGLHY FSKGNGENSYGGNGDMTYARLGFKGETQINSDLTGYGQWEYNFQGNNSEGADAQTGNK TRLAFAGLKYADVGSFDYGRNYGVVYDALGYTDMLPEFGGDTAYSDDFFVGRVGGVAT YRNSNFFGLVDGLNFAVQYLGKNERDTARRSNGDGVGGSISYEYEGFGIVGAYGAADR TNLQEAQPLGNGKKAEQWATGLKYDANNIYLAANYGETRNATPITNKFTNTSGFANKT QDVLLVAQYQFDFGLRPSIAYTKSKAKDVEGIGDVDLVNYFEVGATYYFNKNMSTYVD YIINQIDSDNKLGVGSDDTVAVGIVYQF" misc_feature complement(971121..972206) /gene="ompF" /locus_tag="SF0926" /note="porin OmpF; Region: PRK10002" /db_xref="CDD:236639" misc_feature complement(order(971121..971123,971127..971129, 971133..971135,971220..971222,971229..971234, 971736..971741,971745..971747,971841..971849, 971877..971891,971895..971900,971937..971948, 971952..971954,971958..971966,971970..971972, 971988..972002,972081..972089,972108..972110, 972114..972116)) /gene="ompF" /locus_tag="SF0926" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238208" misc_feature complement(order(971745..971747,971802..971804, 971895..971897,972015..972017,972093..972095)) /gene="ompF" /locus_tag="SF0926" /note="eyelet of channel [active]" /db_xref="CDD:238208" gene complement(972807..974207) /gene="asnC" /locus_tag="SF0927" /db_xref="GeneID:1023893" CDS complement(972807..974207) /gene="asnC" /locus_tag="SF0927" /note="Code: J; COG: COG0017" /codon_start=1 /transl_table=11 /product="asparaginyl-tRNA synthetase" /protein_id="NP_706849.2" /db_xref="GeneID:1023893" /translation="MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDG SCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGW VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWV STPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGET YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKA VLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWG VDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG GSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN VRDVIPFPRTPRNASF" misc_feature complement(972810..974207) /gene="asnC" /locus_tag="SF0927" /note="asparaginyl-tRNA synthetase; Validated; Region: asnC; PRK03932" /db_xref="CDD:235176" gene complement(974376..975578) /gene="pncB" /locus_tag="SF0928" /db_xref="GeneID:1023900" CDS complement(974376..975578) /gene="pncB" /locus_tag="SF0928" /note="Code: H; COG: COG1488" /codon_start=1 /transl_table=11 /product="nicotinate phosphoribosyltransferase" /protein_id="NP_706850.2" /db_xref="GeneID:1023900" /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVHVAAEFRCRGD DLLGIYADAIREQIQAMQHLRLQDDEYQWLSALPFFKADYLNWLREFRFNPEQVTVSN DNGKLDIRLSGPWREVILWEVPLLAVISEMVHRYRSPQADVAQALDTLESKLVDFSAL TAGLDMSRFHLMDFGTRRRFSREVQETIVKRLQQESWFVGTSNYDLARRLSLTPMGTQ AHEWFQAHQQISPDLANSQRAALAAWLEEYPDQLGIALTDCITMDAFLRDFGVEFASR YQGLRHDSGDPVEWGEKAIAHYEKLGIDPQSKTLVFSDNLDLRKAVELYRHFSSRVQL SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD LPHIKKAS" misc_feature complement(974379..975578) /gene="pncB" /locus_tag="SF0928" /note="nicotinate phosphoribosyltransferase; Provisional; Region: PRK05321" /db_xref="CDD:235406" misc_feature complement(order(974550..974552,974559..974564, 974568..974570,974637..974642,974730..974732, 974973..974978,975045..975053)) /gene="pncB" /locus_tag="SF0928" /note="active site" /db_xref="CDD:238695" gene 975844..978459 /gene="pepN" /locus_tag="SF0929" /db_xref="GeneID:1023908" CDS 975844..978459 /gene="pepN" /locus_tag="SF0929" /note="Code: E; COG: COG0308" /codon_start=1 /transl_table=11 /product="aminopeptidase" /protein_id="NP_706851.1" /db_xref="GeneID:1023908" /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAQKTVVTAVSQAVR HGASDAPLRLNGEDLKLVSVHINDEPWTAWKEEEEGALVISNLPERFTLKIINEISLA ANTALEGLYQSGDALCTQCEAEGFRHITYYLDRPDVLARFTTKIIADKIKYPFLLSNG NRVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDR GNLDRAPWAMTSLKNSMKWDEERFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKY VLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSD LGSRAVNRINNVRTMRGLQFAEDASPMAHPIRPDMVIEMNNFYTLTVYEKGAEVIRMI HTLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPVVT VKDDYNPETEQYTLTISQRTPATPDQAEKQPLHIPFAIELYDNEGKVIPLQKGGHPVN SVLNVTQAEQTFVFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNGFSRW DAAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSVN EMAELFDIIDPIAIAEVREALTRTLATELADELLAIYNANYQSEYRVEHEDIAKRTLR NACLRFLAFGETHLADVLVSKQYHEANNMTDALAALSAAVAAQLPCRDALMQEYDDKW HQDGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAF HAEDGSGYQFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAALEQLKGLE NLSGDLYEKITKALA" misc_feature 975844..978456 /gene="pepN" /locus_tag="SF0929" /note="aminopeptidase N; Provisional; Region: pepN; PRK14015" /db_xref="CDD:237585" misc_feature order(976201..976203,976207..976209,976618..976638, 976726..976728,976735..976740,976747..976749, 976801..976806,976963..976965,976972..976974, 976987..976992) /gene="pepN" /locus_tag="SF0929" /note="active site" /db_xref="CDD:341063" gene complement(978666..979433) /gene="ssuB" /locus_tag="SF0930" /db_xref="GeneID:1023909" CDS complement(978666..979433) /gene="ssuB" /locus_tag="SF0930" /note="Code: P; COG: COG1116" /codon_start=1 /transl_table=11 /product="aliphatic sulfonates ABC transporter ATP-binding protein" /protein_id="NP_706852.1" /db_xref="GeneID:1023909" /translation="MNTARLNQGTPLLLNAVSKHYAENIVLNQLDLHIPAGQFVAVVG RSGGGKSTLLHLLAGLETPTAGDVLAGTTPLAEIQDDTRMMFQDARLLPWKSVIDNVG LGLKGQWRDAARRALAAAGLENRAGEWPAALSGGQKQRVALARALIHRPGLLLLDEPL GALDALTRLEMQDLIVSLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKISLDLTVD IPRPRRLGSVRLAELEAEVLQRVMRRGHSEQLIRRHG" misc_feature complement(978675..979433) /gene="ssuB" /locus_tag="SF0930" /note="aliphatic sulfonates transport ATP-binding subunit; Provisional; Region: ssuB; PRK11247" /db_xref="CDD:183055" misc_feature complement(979281..979304) /gene="ssuB" /locus_tag="SF0930" /note="Walker A/P-loop; other site" /db_xref="CDD:213179" misc_feature complement(order(978861..978863,978960..978965, 979173..979175,979278..979286,979290..979295)) /gene="ssuB" /locus_tag="SF0930" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213179" misc_feature complement(979173..979184) /gene="ssuB" /locus_tag="SF0930" /note="Q-loop/lid; other site" /db_xref="CDD:213179" misc_feature complement(979008..979037) /gene="ssuB" /locus_tag="SF0930" /note="ABC transporter signature motif; other site" /db_xref="CDD:213179" misc_feature complement(978960..978977) /gene="ssuB" /locus_tag="SF0930" /note="Walker B; other site" /db_xref="CDD:213179" misc_feature complement(978942..978953) /gene="ssuB" /locus_tag="SF0930" /note="D-loop; other site" /db_xref="CDD:213179" misc_feature complement(978855..978875) /gene="ssuB" /locus_tag="SF0930" /note="H-loop/switch region; other site" /db_xref="CDD:213179" gene complement(979430..980083) /locus_tag="SF0931" /db_xref="GeneID:1023892" CDS complement(979430..980083) /locus_tag="SF0931" /note="Code: P; COG: COG0600" /codon_start=1 /transl_table=11 /product="taurine transport system permease-like protein" /protein_id="NP_706853.1" /db_xref="GeneID:1023892" /translation="MITDVWKYRGKSRQHLAISSWRALIGFSIGGSLGLILGLISGLS RWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYINTWHGIR NIDRGLVEMARSYGLSGIPLFIHVILPDALPSIMVGVRFALGLMWLTLIVAETISANS GIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLRWNPAYHLKETTI" misc_feature complement(979433..>980056) /locus_tag="SF0931" /note="Transmembrane subunit (TM) found in Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which generally bind type 2 PBPs. These types of transporters consist of a PBP, two TMs, and two cytoplasmic ABC ATPase subunits, and...; Region: TM_PBP2; cl00427" /db_xref="CDD:444901" misc_feature complement(order(979511..979516,979523..979528, 979535..979540,979544..979549,979556..979561, 979589..979594,979619..979624,979631..979642, 979661..979663,979670..979675,979715..979717, 979766..979768,979775..979780,979790..979792, 979796..979801,979808..979810,979814..979816, 979820..979825,979871..979873,979877..979882, 979889..979918,979922..979933)) /locus_tag="SF0931" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(979625..979642,979871..979915)) /locus_tag="SF0931" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(979559..979561,979589..979591, 979598..979600,979622..979624,979871..979873)) /locus_tag="SF0931" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(979694..979696,979706..979711, 979727..979765)) /locus_tag="SF0931" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" mobile_element complement(980047..981377) /mobile_element_type="insertion sequence:IS2" gene complement(980058..980963) /locus_tag="SF0932" /db_xref="GeneID:1026207" CDS complement(980058..980963) /locus_tag="SF0932" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_706854.1" /db_xref="GeneID:1026207" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGPRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(980061..980963) /locus_tag="SF0932" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(980921..981331) /locus_tag="SF0933" /db_xref="GeneID:1023878" CDS complement(980921..981331) /locus_tag="SF0933" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_706855.3" /db_xref="GeneID:1023878" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(980924..981286) /locus_tag="SF0933" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene complement(981569..982714) /gene="ycbN" /locus_tag="SF0934" /db_xref="GeneID:1023897" CDS complement(981569..982714) /gene="ycbN" /locus_tag="SF0934" /note="Code: C; COG: COG2141" /codon_start=1 /transl_table=11 /product="alkanesulfonate monooxygenase" /protein_id="NP_706856.1" /db_xref="GeneID:1023897" /translation="MSLNMFWFLPTHGDGHYLGTEEGSRPVDHGYLQQIAQAADRLGY TGVLIPTGRSCEDAWLVAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGR ALFNLVTGSDPQELAGDGVFLDHSERYEASAEFTQVWRRLLLGETVNFNGKHIHVRGA KLLFPPIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAY GRKIRFGIRLHVIVRETNDEAWQAAERLISHLDDETIAKAQAAFARTDSVGQQRMAAL HNGKRDNLEISPNLWAGVGLVRGGAGTALVGDGPTVAARINEYAALGIDSFVLSGYPH LEEAYRVGELLFPHLDVAIPEIPQPQPLNPQGEAVANDFIPRKVAQS" misc_feature complement(981575..982708) /gene="ycbN" /locus_tag="SF0934" /note="alkanesulfonate monooxygenase; Provisional; Region: PRK00719" /db_xref="CDD:234821" misc_feature complement(order(982028..982030,982034..982036, 982130..982132,982172..982177,982331..982333, 982391..982393,982550..982552,982679..982681, 982691..982693)) /gene="ycbN" /locus_tag="SF0934" /note="active site" /db_xref="CDD:238527" misc_feature complement(order(982223..982228,982232..982243, 982247..982249,982361..982366,982373..982375, 982424..982426,982433..982435,982442..982447, 982454..982459,982463..982465,982514..982516, 982523..982528,982535..982537,982544..982561)) /gene="ycbN" /locus_tag="SF0934" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238527" misc_feature complement(982481..982486) /gene="ycbN" /locus_tag="SF0934" /note="non-prolyl cis peptide bond [active]" /db_xref="CDD:238527" misc_feature complement(order(981980..981997,982016..982027, 982208..982249,982334..982342,982361..982387)) /gene="ycbN" /locus_tag="SF0934" /note="insertion regions; other site" /db_xref="CDD:238527" gene complement(982711..983712) /gene="ycbO" /locus_tag="SF0935" /db_xref="GeneID:1023919" CDS complement(982711..983712) /gene="ycbO" /locus_tag="SF0935" /note="Code: P; COG: COG0715" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706857.4" /db_xref="GeneID:1023919" /translation="MFRFLTFCLCEVMPMRNIIKLALAGLLSVSTFAVAAESSPEALR IGYQKGSIGMVLAKSHQLLEKRYPQSKISWVEFPAGPQMLEALNVGSIDLGSTGDIPP IFAQAAGADLVYVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLR ALRQAGLKFTDIQPTYLTPADARAAFQQGNVDAWAIWDPYYSAALLQGGVRVLKDGTD LNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMGLPAPVI ASYLDHRPPTTIKPVNAEVAALQQQTADLFYENRLVPKKVDIRQRIWQPTQLEGKQL" misc_feature complement(982732..983670) /gene="ycbO" /locus_tag="SF0935" /note="alkanesulfonate transporter substrate-binding subunit; Provisional; Region: PRK11553" /db_xref="CDD:236929" misc_feature complement(order(983041..983043,983113..983115, 983122..983127,983251..983253,983266..983268, 983338..983340,983473..983475,983566..983568)) /gene="ycbO" /locus_tag="SF0935" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270275" gene complement(983663..984238) /gene="ycbP" /locus_tag="SF0936" /db_xref="GeneID:1023889" CDS complement(983663..984238) /gene="ycbP" /locus_tag="SF0936" /note="Code: R; COG: COG0431" /codon_start=1 /transl_table=11 /product="NAD(P)H-dependent FMN reductase" /protein_id="NP_706858.2" /db_xref="GeneID:1023889" /translation="MRVITLAGSPRFPSRSSSLLEYAREKLNGLDVEVYHWNLQNFAP EDLLYARFDSPALKTFTEQLQQADGLIVATPVYKAAYSGALKTLLDLLPERALQGKVV LPLATGGTVAHLLAVDYALKPVLSALKAQEILHGVFADDSQLIDYHHRPQFTPNLQTH LDTALETFWQALHRRDVQVPDLLSLRGNAHA" misc_feature complement(983666..984238) /gene="ycbP" /locus_tag="SF0936" /note="NAD(P)H-dependent FMN reductase; Provisional; Region: PRK10569" /db_xref="CDD:182557" gene complement(984157..984570) /locus_tag="SF0937" /db_xref="GeneID:1023887" CDS complement(984157..984570) /locus_tag="SF0937" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706859.1" /db_xref="GeneID:1023887" /translation="MASVVAWLANAVGCTPSAVPLKVNVAFLVTVTSQPSKAIGTSVL TPETAPLVCNLVALTFGNVTTESFVAATRVQAGAITLPLTFSCLSDRLTELLSMLTKK RTIGYKERVCVSSPWRVVLAFLLAPAPCWNMRGKN" mobile_element 984596..985335 /note="partial" /mobile_element_type="insertion sequence:IS1" gene 984651..984926 /gene="insA" /locus_tag="SF0938" /db_xref="GeneID:1023883" CDS 984651..984926 /gene="insA" /locus_tag="SF0938" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706860.1" /db_xref="GeneID:1023883" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 984672..>984923 /gene="insA" /locus_tag="SF0938" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" mobile_element complement(985431..986198) /mobile_element_type="insertion sequence:IS1" gene complement(985446..985841) /gene="insB" /locus_tag="SF0939" /db_xref="GeneID:1023888" CDS complement(985446..985841) /gene="insB" /locus_tag="SF0939" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706861.1" /db_xref="GeneID:1023888" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKAIGHYLNIKHYQ" misc_feature complement(985449..985838) /gene="insB" /locus_tag="SF0939" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(985868..986143) /gene="insA" /locus_tag="SF0940" /db_xref="GeneID:1023931" CDS complement(985868..986143) /gene="insA" /locus_tag="SF0940" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706862.1" /db_xref="GeneID:1023931" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<985871..986122) /gene="insA" /locus_tag="SF0940" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 986284..988884 /gene="ycbS" /locus_tag="SF0941" /db_xref="GeneID:1023886" CDS 986284..988884 /gene="ycbS" /locus_tag="SF0941" /note="Code: N; COG: COG3188" /codon_start=1 /transl_table=11 /product="outer membrane usher protein" /protein_id="NP_706863.2" /db_xref="GeneID:1023886" /translation="MYRTHRQHSLLSSGGVPSFIGGLVVFVSAAFNAQAETWFDPAFF KDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNFVEITPEKGIAACLTTE SLDAMGVNTDAFPAFKQLDKQVCVPLAEIIPDASVTFNVNKLRLEISVPQIAIKSNAR GYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLNSGVNLGPWRLRNNS TWSRSSGQTAEWKNLSSYLQRAVIPLKGELTVGDDYTAGDFFDSVSFRGVQLASDDNM LPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISDLYSTSSSGDLLVE IKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQTTLQWGGP WGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEHKGQSYRFLY AKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFNDGDDEDTPMWSRYYNLFY TKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSLGVSWNY SKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKKNYAWMTSNTSIDNEGHITQNLG LTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQQLNY ALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYATSY RENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF GAIATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINS AITRMDAICR" misc_feature 986284..988881 /gene="ycbS" /locus_tag="SF0941" /note="outer membrane usher protein; Provisional; Region: PRK15193" /db_xref="CDD:237919" gene 988875..989858 /locus_tag="SF0942" /db_xref="GeneID:1023884" CDS 988875..989858 /locus_tag="SF0942" /codon_start=1 /transl_table=11 /product="FimH-like protein" /protein_id="NP_706864.1" /db_xref="GeneID:1023884" /translation="MQIIFGEKCVLLLRLFFAAVLMLWCAQTAAYIGQCHTTQGNPYI GVNFGVKTLDEEENTAGVVKDKFYQWNESNDYYVSCDCDKDNVRSGRWAFAADSPLVY LGDNWYKINDYLAAKVLLQVKGSSPTAVPFENVGTGADTRWHICDPGGQRLGGQGASG NSGSFSLKILQPFVGSVVIPPMALARLFECYNIPAGDSCTTTGTPVLVYYLSGTINSL GSCSVNAGETIEVDLGDVFAANFRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSL TATSDPSYPQAIKTSRPGVGVVVTDSQHNIISPAGGTLPLSIPDDADSIRE" misc_feature 988893..989855 /locus_tag="SF0942" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" gene 989956..990498 /locus_tag="SF0943" /db_xref="GeneID:1023921" CDS 989956..990498 /locus_tag="SF0943" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="fimbrial-like protein" /protein_id="NP_706865.1" /db_xref="GeneID:1023921" /translation="MKKKTIYQCVILFFSLLNIHVGMAGPEQVSMHIYGNVVDQGCDV ATKSALQNIHIGDFNISDFQAANTVSTAADLNIDITGCAAGITGADVLFSGEADTLAP TLLKLTDTGGSGGMATGIAVQILDAQSQQEIPLNQVQPLTPLKAGDNTLKYQLRYKST KAGATGGNATAVLYFDLVYQ" misc_feature 990043..990495 /locus_tag="SF0943" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" gene 990458..991021 /locus_tag="SF0944" /db_xref="GeneID:1023885" CDS 990458..991021 /locus_tag="SF0944" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="fimbrial-like protein" /protein_id="NP_706866.1" /db_xref="GeneID:1023885" /translation="MRRRFSILIWFTSEGVMLKRIIWILFLLGLTGGCELFAHDGTVN ISGSFRRNTCVLAQDSKQINVQLGDVSLTRFFHGNYGPEKSFIINLQDCGTDVSTVDV TFSGTPDGVQSEMLSIESGTDAASGLAIAILDDAKILIPLNQASKDYSLHSGKVPLTF YAQLRPVNSDVQSGKVNASATFVLHYD" misc_feature 990512..991018 /locus_tag="SF0944" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" gene 990987..991724 /gene="ycbF" /locus_tag="SF0945" /db_xref="GeneID:1023874" CDS 990987..991724 /gene="ycbF" /locus_tag="SF0945" /note="Code: N; COG: COG3121" /codon_start=1 /transl_table=11 /product="putativi pili assembly chaperone" /protein_id="NP_706867.1" /db_xref="GeneID:1023874" /translation="MPARHLYFIMTNTWNRLALLIFAVLSLLVAGELQAGVVVGGTRF IFPADRESISILLTNTSQESWLINSKINRPTRWAGGEASTVPALLLAAPPLILLKPGT TGTLRLLRTESDILPVDRETLFELSIASVPSGKVENQSVKVAMRSVFKLFWRPEGLPG DPLEAYQQLRWTRNSQGVQLTNPTPYYINLIQVSVNGKALSNAGVVPPKSQRQTNWCQ VIAPCHVAWRTINDYGGLSAKKEQNLP" misc_feature 991014..991721 /gene="ycbF" /locus_tag="SF0945" /note="fimbrial chaperone; Region: PRK11385" /db_xref="CDD:183112" gene 991835..992845 /gene="pyrD" /locus_tag="SF0946" /db_xref="GeneID:1023933" CDS 991835..992845 /gene="pyrD" /locus_tag="SF0946" /note="Code: F; COG: COG0167" /codon_start=1 /transl_table=11 /product="dihydroorotate dehydrogenase 2" /protein_id="NP_706868.2" /db_xref="GeneID:1023933" /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPFEALVRQKVPA KPVNCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSIEIGTVTPRPQPGNDKPRLFR LVDAEGLINRMGFNNLGVDNLVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICME KIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMHHKYVPIAVKI APDLSEDELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKST EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLIKEIVT HI" misc_feature 991835..992842 /gene="pyrD" /locus_tag="SF0946" /note="quinone-dependent dihydroorotate dehydrogenase; Region: PRK05286" /db_xref="CDD:235388" gene 992983..993561 /gene="ycbW" /locus_tag="SF0947" /db_xref="GeneID:1023911" CDS 992983..993561 /gene="ycbW" /locus_tag="SF0947" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706869.1" /db_xref="GeneID:1023911" /translation="MLLRFYRVGERQMRIKPDDNWRWYYDEEHDRMMLDLANGMLFRS RFARKMLTPDAFSPAGFCVDDAALYFSFEEKCRDFNLSKDQKAELVLNALVAIRYLKP QMPKSWHFVSHGEMWVPMPGDAACVWLSDTHEQVNLLVVESGENAALCLLAQPCVVIA GRAMQLGDAIKIMNDRLKPQVNVDSFSLEQAV" misc_feature 993022..993519 /gene="ycbW" /locus_tag="SF0947" /note="Cell-division protein ZapC; Region: ZapC; pfam07126" /db_xref="CDD:429305" gene complement(993558..994667) /locus_tag="SF0948" /db_xref="GeneID:1023926" CDS complement(993558..994667) /locus_tag="SF0948" /note="Code: R; COG: COG3217" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706870.1" /db_xref="GeneID:1023926" /translation="MATLTRLFIHPVKSMRGIGLTHALADVSGLAFDRIFMITEPDGT FITARQFPQMVRFTPSPVHDGLHLTAPDGSSAYVRFADFATQDAPTEVWGTHFTARIA PDAINKWLSGFFSREVQLRWVGPQMTRRVKRHNTVPLSFADGYPYLLANEASLRDLQQ RCPASVKMEQFRPNLVVSGASAWEEDSWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQ KHPAGEPLKTLQSFRTAQDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKIYGAAA ADDTANITQQPDANVDIDWQGQAFRGNNQQVLLEQLENQGIRIPYSCRAGICGSCRVQ LLEGEVTPLKKSAMGDDGTILCCSCVPKTALKLTR" misc_feature complement(993873..994667) /locus_tag="SF0948" /note="N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and metabolism, Defense mechanisms]; Region: YcbX; COG3217" /db_xref="CDD:442450" misc_feature complement(993564..993803) /locus_tag="SF0948" /note="Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633" /db_xref="CDD:440398" gene 994911..997019 /gene="rlmL" /locus_tag="SF0949" /db_xref="GeneID:1023922" CDS 994911..997019 /gene="rlmL" /locus_tag="SF0949" /codon_start=1 /transl_table=11 /product="23S rRNA m(2)G2445 methyltransferase" /protein_id="NP_706871.1" /db_xref="GeneID:1023922" /translation="MNSLFASTARGLEELLKTELENLGAVECQVVQGGVHFKGDTRLV YQSLMWSRLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFNPGATFAVHFSGLNDTI RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHKETASIALDLSGDGLH LRGYRDRAGIAPIKETLAAAIVMRSGWQSGTPLLDPMCGSGTLLIEAAMLATDRAPGL HRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQRARTNAR LAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMK NQFGGWNLSLFSASPDLLSCLQLRADKQYKAKNGPLDCVQKNYHVAESTPDSKPAMVA EDYANRLRKNLKKFEKWARQEGIECYRLYDADLPEYNVAVDRYADWVVVQEYAPPKTI DAHKARQRLFDIIAATISVLGIAPNKLVLKTRERHKGKNQYQKLGEKGEFLEVTEYNA HLWVNLTDYLDTGLFLDHRIARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTT VDMSRTYLEWAERNLRLNGLTRRAHRLIQADCLAWLREANEQFDLIFIDPPTFSNSKR MEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNKRGFRMDLDGLAKLGLKAQEITQKT LSQDFARNRQIHNCWLITAA" misc_feature 994911..997016 /gene="rlmL" /locus_tag="SF0949" /note="bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL; Region: rlmL; PRK11783" /db_xref="CDD:236981" gene 997031..998938 /gene="uup" /locus_tag="SF0950" /db_xref="GeneID:1023917" CDS 997031..998938 /gene="uup" /locus_tag="SF0950" /note="Code: R; COG: COG0488" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_706872.1" /db_xref="GeneID:1023917" /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNVEGSVYDFVAEGIEEQAEYLKRYH DISRLVMNDPSEKNLNELAKVQEQLDHHNLWQLENRINEVLAQLGLDPNVALSSLSGG WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN MATRIVDLDRGKLVTYPGNYDQYLQEKEEALRVEELQNAEFDLKLAQEEVWIRQGIKA RRTRNEGRVRALKAMRRERGERREVMGTAKMQVEEASRSGKIVFEMEDVCYQVNGKQL VKDFSAQVLRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA ELDPDKTVMDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRAFSGGERNRLL LARLFLKPSNLLILDEPTNDLDVETLELLEELIDSYQGTVLLVSHDRQFVDNTVTECW IFEGGGKIGRYVGGYHDARGQQEQYVALKQPAVKKSEEAAAPKAETVKRSSSKLSYKL QRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFER WEYLEALKNGG" misc_feature 997031..998935 /gene="uup" /locus_tag="SF0950" /note="ABC transporter ATPase component; Reviewed; Region: PRK11147" /db_xref="CDD:236861" gene 999068..1000321 /gene="pqiA" /locus_tag="SF0951" /db_xref="GeneID:1023929" CDS 999068..1000321 /gene="pqiA" /locus_tag="SF0951" /note="Code: S; COG: COG2995" /codon_start=1 /transl_table=11 /product="paraquat-inducible membrane protein A" /protein_id="NP_706873.1" /db_xref="GeneID:1023929" /translation="MCEHHHAAKHILCSQCDMLVALPRLEHGQKAACPRCGTTLTVAW DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEITLLEIPGVLFSEDYASLGTF FLLFVQLVPAFCLITILLLVNRAELPVRLKEQLARVLFQLKTWGMAEIFLAGVLVSFV KLMAYGSIGVGSSFLPWCLFCVLQLRAFQCVDRRWLWDDIAPMPELRQPLKPGVTGIR QGLRSCSCCTAILPADEPVCPRCSTKGYVRRRNSLQWTLALLVTSIMLYLPANILPIM VTDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG KRDSERMHLIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMSIYPAMGALMFALVVIM TMFSAMTFDPRLSWDRQPESEHEES" misc_feature 999068..1000318 /gene="pqiA" /locus_tag="SF0951" /note="membrane integrity-associated transporter subunit PqiA; Region: PRK15103" /db_xref="CDD:237910" gene 1000326..1001966 /gene="pqiB" /locus_tag="SF0952" /db_xref="GeneID:1023923" CDS 1000326..1001966 /gene="pqiB" /locus_tag="SF0952" /note="Code: R; COG: COG3008" /codon_start=1 /transl_table=11 /product="paraquat-inducible protein B" /protein_id="NP_706874.2" /db_xref="GeneID:1023923" /translation="MESNNGEAKIQKVKNWSPVWIFPIVTALIGAWVLFYHYSHQGPE VTLITANAEGIEGGKTTIKSRSVDVGVVESATLADDLTHVEIKARLNSGMEKLLHKDT VFWVVKPQIGREGISGLGTLLSGVYIELQPGAKGSKMDKYDLLDSPPLAPPDAKGIRV ILDSKKAGQLSPGDPVLFRGYRVGSVETSTFDTQKRNISYQLFINAPYDRLVTSNVRF WKDSGIAVDLTSAGMRVEMGSLTTLLSGGVSFDVPEGLDLGQPVAPKTAFVLYDDQKS IQDSLYTDHIDYLMFFKDSVRGLQPGAPVEFRGIRLGTVSKVPFFAPNMRQTFNDDYR IPVLIRIEPERLKMQLGENADVVEHLGELLKRGLRGSLKTGNLVTGALYVDLDFYPNT PAITGIREFNGYQIIPTVSGGLAQIQQRLMEALDKINKLPLNPMIEQATSTLSESQRT MKNLQTTLDSMNKILASQSMQQLPTDMQSTLRELNRSMQGFQPGSAAYNKMVADMQRL DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ" misc_feature 1000326..1001963 /gene="pqiB" /locus_tag="SF0952" /note="intermembrane transport protein PqiB; Region: PRK10807" /db_xref="CDD:182747" gene 1001963..1002526 /gene="ymbA" /locus_tag="SF0953" /db_xref="GeneID:1027561" CDS 1001963..1002526 /gene="ymbA" /locus_tag="SF0953" /note="Code: S; COG: COG3009" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706875.1" /db_xref="GeneID:1027561" /translation="MKKWLVTIAALWLAGCSSGEINKNYYQLPVVQSGTQSTASQGNR LLWVEQVTVPDYLAGNGVVYQTSDVKYVIANNNLWASPLDQQLRNTLVANLSTQLPGW VVASQPLGSAQDTLNVTVTEFNGRYDGKVIVSGEWLLNHQGQLIKRPFRLEGVQTQDG YDEMVKVLAGVWSQEAASIAQEIKRLP" misc_feature 1001969..1002514 /gene="ymbA" /locus_tag="SF0953" /note="membrane integrity-associated transporter subunit PqiC; Region: pqiC; NF033620" /db_xref="CDD:468113" gene 1002782..1002949 /locus_tag="SF953a" /db_xref="GeneID:16608313" CDS 1002782..1002949 /locus_tag="SF953a" /codon_start=1 /transl_table=11 /product="ribosome modulation factor" /protein_id="YP_008439237.1" /db_xref="GeneID:16608313" /translation="MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLSQRSQWLGGW REAMADRVVMA" misc_feature 1002782..1002946 /locus_tag="SF953a" /note="ribosome modulation factor; Provisional; Region: PRK14563" /db_xref="CDD:184747" gene complement(1003019..1003537) /gene="fabA" /locus_tag="SF0954" /db_xref="GeneID:1023905" CDS complement(1003019..1003537) /gene="fabA" /locus_tag="SF0954" /note="Code: I; COG: COG0764" /codon_start=1 /transl_table=11 /product="3-hydroxydecanoyl-ACP dehydratase" /protein_id="NP_706876.1" /db_xref="GeneID:1023905" /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG KGRALGVGEVKFTGQVLPTAKKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTASD LKVGLFQDTSAF" misc_feature complement(1003022..1003537) /gene="fabA" /locus_tag="SF0954" /note="bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase; Region: PRK05174" /db_xref="CDD:179953" misc_feature complement(order(1003217..1003228,1003259..1003264, 1003271..1003276,1003283..1003285,1003451..1003459)) /gene="fabA" /locus_tag="SF0954" /note="active site 1 [active]" /db_xref="CDD:238614" misc_feature complement(order(1003187..1003192,1003196..1003198, 1003202..1003228,1003283..1003285,1003295..1003297, 1003448..1003450,1003454..1003456)) /gene="fabA" /locus_tag="SF0954" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238614" misc_feature complement(order(1003187..1003198,1003298..1003306)) /gene="fabA" /locus_tag="SF0954" /note="active site 2 [active]" /db_xref="CDD:238614" gene complement(1003607..1005367) /locus_tag="SF0955" /db_xref="GeneID:1023916" CDS complement(1003607..1005367) /locus_tag="SF0955" /note="Code: O; COG: COG1067" /codon_start=1 /transl_table=11 /product="ATP-dependent protease" /protein_id="NP_706877.1" /db_xref="GeneID:1023916" /translation="MTITKLAWRDLVPDTDSYQEIFAQPHLIDENDPLFSDTQPRLQF ALEQLLHTRASSSFMLAKAPEESEYLNLIADAARTLQSDAGQLVGDHYEVSGHSIRLR HAVSADDNFATLTQVVAADWVEAEQLFGCLRQFNGDITLQPGLVHHANGGILIISLRT LLAQPLLWMRLKNIVNRERFDWVAFDVSRPLPVSVPSMPLKLKVILVGERESLADFQE MEPELSEQAIYSEFEDTLQIVDAESVSQWCRWVTFTARHNHLPAPGADAWPVLIREAA RYTGEQETLPLSPQWILRQCKEVASLCDGDTFSGEQLNLMLQQREWREGFLAERMQDE ILQEQILIETEGERIGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFTDIERKAE LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA LADVPVNQSIAITGSVDQFGRVQPVGGLNEKIEGFFAICQQRELTGKQGVIIPTANVR HLSLHSELVKAVEEGKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQASQ QEGRHRFPWPLRWLNWFIPN" misc_feature complement(1003652..>1004989) /locus_tag="SF0955" /note="Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]; Region: LonB; COG1067" /db_xref="CDD:440686" gene 1005552..1005956 /gene="ycbG" /locus_tag="SF0956" /db_xref="GeneID:1026214" CDS 1005552..1005956 /gene="ycbG" /locus_tag="SF0956" /note="Code: S; COG: COG3120" /codon_start=1 /transl_table=11 /product="Ter macrodomain organizer matS-binding protein" /protein_id="NP_706878.1" /db_xref="GeneID:1026214" /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYIEASAAQEAVDVL LSLENEPVLVNGWIDKHMNPELVNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFIVWQ RLAGLAQRRGKTLSETIVQLIEDAENKEKVRE" misc_feature 1005552..1005953 /gene="ycbG" /locus_tag="SF0956" /note="macrodomain Ter protein MatP; Region: PRK05097" /db_xref="CDD:235344" gene complement(1006082..1007128) /gene="ompA" /locus_tag="SF0957" /db_xref="GeneID:1023906" CDS complement(1006082..1007128) /gene="ompA" /locus_tag="SF0957" /note="Code: M; COG: COG2885" /codon_start=1 /transl_table=11 /product="outer membrane protein OmpA" /protein_id="NP_706879.2" /db_xref="GeneID:1023906" /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYTGAKLGWSQYHDTGF IPNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGDNINGAYKAQGVQLTA KLGYPITDDLDIYTRLGGMVWRADTKANVPGGASFKDHDTGVSPVFAGGVEYAITPEI ATRLEYQWTNNIGDANTIGTRPDNGLLSLGVSYRFGQGEAAPVVAPAPAPEVQTKHFT LKSDVLFNFNKATLKPEGQAALDQLYSQLSNLDPKDGSVVVLGYTDRIGSDAYNQGLS ERRAQSVVDYLISKGIPADKISARGMGESNPVTGNTCDNVKQRAALIDCLAPDRRVEI EVKGIKDVVTQPQA" misc_feature complement(1006085..1007128) /gene="ompA" /locus_tag="SF0957" /note="outer membrane protein A; Reviewed; Region: PRK10808" /db_xref="CDD:236764" gene complement(1007485..1007994) /gene="sulA" /locus_tag="SF0958" /db_xref="GeneID:1023924" CDS complement(1007485..1007994) /gene="sulA" /locus_tag="SF0958" /codon_start=1 /transl_table=11 /product="SOS cell division inhibitor" /protein_id="NP_706880.2" /db_xref="GeneID:1023924" /translation="MYTSGYAHRSSSFSSAASKIARVSTENTTAGLISEVVYREDQPM MTQLLLLPLLQQLGQQSRWQLWLTPQQKLSREWVQASGLPLTKVMQISQLSPCHTVES MVRALRTGNYSVVIGWLTDDLTEEEHAELVDAANEGNAMGFIMRPVSASSHTTRQLSG LKIHSNLYH" misc_feature complement(1007488..1007991) /gene="sulA" /locus_tag="SF0958" /note="cell division inhibitor SulA; Region: sula; TIGR00623" /db_xref="CDD:129710" gene 1008213..1008638 /locus_tag="SF0959" /pseudo /db_xref="GeneID:1023927" misc_feature 1008213..1008638 /locus_tag="SF0959" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787193 (210 aa). BLAST with identity of 99% in 137 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element 1008623..1009686 /note="partial" /mobile_element_type="insertion sequence:IS2" gene 1008669..1009079 /locus_tag="SF0960" /db_xref="GeneID:1023949" CDS 1008669..1009079 /locus_tag="SF0960" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_706881.3" /db_xref="GeneID:1023949" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 1008714..1009076 /locus_tag="SF0960" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene complement(1009650..1011815) /locus_tag="SF0962" /db_xref="GeneID:1023910" CDS complement(1009650..1011815) /locus_tag="SF0962" /note="Code: S; COG: COG1289" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706883.1" /db_xref="GeneID:1023910" /translation="MAFMLSPLLKRYTWNSAWLYYARIFIALCGTTAFPWWLGDVKLT IPLTLGMVAAALTDLDDRLAGRLRNLIITLFCFFIASASVELLFPWPWLFAIGLTLST SGFILLGGLGQRYATIAFGALLIAIYTMLGTSLYEHWYQQPMYLLAGAVWYNVLTLIG HLLFPVRPLQDNLARCYEQLARYLELKSRMFDPDIEDESQAPLYDLALANGQLMATLN QTKLSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLREHFRHSDVLFR FQRLMSMQGQACQQLSRCILLRQSYQHDPHFERAFTHIDAALERIRDNGAPADLLKTL GFLLNNLRAIDAQLATIESEQAQALPRNNDENELADDSPHGLSDIWLRLSRHFTPESA LFRHAVRMSLVLCFGYAIIQITGMHHGYWILLTSLFVCQPNYNATRHRLKLRIIGTLV GIAIGIPVLWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEG FEVALPRVIDTLIGCAIAWAAVSYIWPDWKFRNLPRMLERATEANCRYLDAILEQYHQ GRDNRLAYRIARRDAHNRDAELASVVSNMSSEPNVTPQIREAAFRLLCLNHTFTSYIS ALGAHREQLTNPEILAFLDDAVCYVDDALHHQPADEERVNQALAGLKQRMQQLEPRAD SKEPLVVQQVGLLIALLPEIGRLQRQITVPTSGRTGVFH" misc_feature complement(1009689..1011785) /locus_tag="SF0962" /note="TIGR01666 family membrane protein; Region: YCCS" /db_xref="CDD:130727" gene complement(1011825..1012271) /gene="yccF" /locus_tag="SF0963" /db_xref="GeneID:1027559" CDS complement(1011825..1012271) /gene="yccF" /locus_tag="SF0963" /note="Code: S; COG: COG3304" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706884.1" /db_xref="GeneID:1027559" /translation="MRTVLNILNFVLGGFATTLGWLLATLVSIVLIFTLPLTRSCWEI TKLSLVPYGNEAIHVDELNPAGKNVLLNTGGTVLNIFWLIFFGWWLCLMHIATGIAQC ISIIGIPVGIANFKIAAIALWPVGRRVVSVETAQAAREANARRRFE" misc_feature complement(1011870..1012271) /gene="yccF" /locus_tag="SF0963" /note="YccF domain-containing protein; Region: PRK11770" /db_xref="CDD:236975" gene 1012394..1014448 /gene="helD" /locus_tag="SF0964" /db_xref="GeneID:1023914" CDS 1012394..1014448 /gene="helD" /locus_tag="SF0964" /note="Code: L; COG: COG0210" /codon_start=1 /transl_table=11 /product="DNA helicase IV" /protein_id="NP_706885.2" /db_xref="GeneID:1023914" /translation="MELKATTLGKRLAQHPYDRAVILNAGIKVSGDRHEYLIPFNQLL AIHCKRGLVWGELEFVLPDEKVVRLHGTEWGETQRFYHHLDAHWRRWSGEMSEIASGV LRQQLDLIATRTGENKWLTREQTSGVQQQIRQALSALPLPVNRLEEFDNCREAWRKCQ AWLKDIESARLQHNQAYTEAMLTEYADFFRQVESSPLNPAQARAVVNGEHSLLVLAGA GSGKTSVLVARAGWLLARGEASPEQILLLAFGRKAAEEMDERIRERLHTEDITARTFH ALALHIIQQGSKKVPIVSKLENDTAARHELFIAEWRKQCSEKKAQAKGWRQWLTEEMQ WSVPEGNFWDDEKLQRRLASRLDRWVSLMRMHGGAQAEMIASAPEEIRDLFSKRIKLM APLLKAWKGALKAENAVDFSGLIHQAIVILEKGRFISPWKHILVDEFQDISPQRAALL AALRKQNSQTTLFAVGDDWQAIYRFSGAQMSLTTAFHENFGEGDRCDLDTTYRFNSRI GEVANRFIQQNPGQLKKPLNSLTNGDKKAVTLLDESQLDALLDKLSGYAKPEERILIL ARYHHMRPASLEKAATRWPKLQIDFMTIHASKGQQADYVIIVGLQEGSGGFPAAARES IMEEALLPPVEDFPDAEERRLMYVALTRARHRVWALFNKENPSPFVEILKNLDVPVAR KP" misc_feature 1012394..1014445 /gene="helD" /locus_tag="SF0964" /note="DNA helicase IV; Provisional; Region: helD; PRK11054" /db_xref="CDD:182930" gene complement(1014480..1014947) /gene="mgsA" /locus_tag="SF0965" /db_xref="GeneID:1023912" CDS complement(1014480..1014947) /gene="mgsA" /locus_tag="SF0965" /note="Code: G; COG: COG1803" /codon_start=1 /transl_table=11 /product="methylglyoxal synthase" /protein_id="NP_706886.3" /db_xref="GeneID:1023912" /translation="MYIMELTTRTLPARKHIALVAHDHCKQMLMSWVERHQPLLEQHV LYATGTTGNLISRATGMNVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHD PDVKALLRLATVWNIPVATNVATADFIIQSPHFNDAVDILIPDYQRYLADRLK" misc_feature complement(1014495..1014917) /gene="mgsA" /locus_tag="SF0965" /note="methylglyoxal synthase; Validated; Region: mgsA; PRK05234" /db_xref="CDD:179969" misc_feature complement(order(1014645..1014647,1014726..1014728, 1014741..1014746,1014795..1014800,1014804..1014806, 1014870..1014872,1014888..1014890)) /gene="mgsA" /locus_tag="SF0965" /note="active site" /db_xref="CDD:238710" misc_feature complement(order(1014564..1014566,1014573..1014584, 1014591..1014608,1014612..1014620,1014627..1014629, 1014636..1014638,1014663..1014665,1014702..1014704, 1014720..1014725,1014735..1014740,1014744..1014749, 1014798..1014800,1014879..1014881)) /gene="mgsA" /locus_tag="SF0965" /note="dimer interfaces [polypeptide binding]; other site" /db_xref="CDD:238710" misc_feature complement(order(1014645..1014647,1014726..1014728)) /gene="mgsA" /locus_tag="SF0965" /note="catalytic residues [active]" /db_xref="CDD:238710" gene complement(1015034..1015696) /locus_tag="SF0966" /db_xref="GeneID:1023913" CDS complement(1015034..1015696) /locus_tag="SF0966" /note="Code: S; COG: COG3110" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706887.1" /db_xref="GeneID:1023913" /translation="MKTGIVTTLIALCLPVSVFATTLRLSTDVDLLVLDGKKVSSSLL RGADSIELDNGPHQLVFRVEKTIHLSNSEERLYISPPLVVSFNTQLINQVNFRLPRLE NEREANHFDAAPRLELLDGDATPIPVKLDILAITSTAKTIDYEVEVERYNKSAKRASL PQFATMMADDSTLLSGVSELDAIPPQSQVLTEQRLKYWFKLADPQTRNTFLQWAEKQP SS" misc_feature complement(1015037..1015696) /locus_tag="SF0966" /note="DUF2057 family protein; Region: PRK03641" /db_xref="CDD:179619" gene 1015815..1016282 /locus_tag="SF0967" /db_xref="GeneID:1023899" CDS 1015815..1016282 /locus_tag="SF0967" /note="Code: R; COG: COG1832" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706888.1" /db_xref="GeneID:1023899" /translation="MVGMSALSYTLLNSLEEIMKETDIAGILTSTHTIALVGASDKPD RPSYRVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYGTLADVPEKVDMVDVFRNSEAAW GVAQEAIAIGAKTLWMQLGVINEQAAVLARDAGLNVVMDRCPAIEIPRLGLAK" misc_feature 1015863..1016279 /locus_tag="SF0967" /note="Predicted CoA-binding protein [General function prediction only]; Region: YccU; COG1832" /db_xref="CDD:441437" gene complement(1016327..1016695) /gene="yccV" /locus_tag="SF0968" /db_xref="GeneID:1023941" CDS complement(1016327..1016695) /gene="yccV" /locus_tag="SF0968" /codon_start=1 /transl_table=11 /product="heat shock protein HspQ" /protein_id="NP_706889.1" /db_xref="GeneID:1023941" /translation="MWNFTLISKVKISREVTMIASKFGIGQQVRHSLLGYLGVVVDID PVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHPEQP SMDELAQTIRKQLQAPRLRN" misc_feature complement(1016330..1016644) /gene="yccV" /locus_tag="SF0968" /note="heat shock protein HspQ; Provisional; Region: PRK14129" /db_xref="CDD:184526" gene complement(1016702..1017892) /locus_tag="SF0970" /db_xref="GeneID:1023901" CDS complement(1016702..1017892) /locus_tag="SF0970" /note="Code: R; COG: COG1092" /codon_start=1 /transl_table=11 /product="23S rRNA m(5)C1962 methyltransferase" /protein_id="NP_706890.1" /db_xref="GeneID:1023901" /translation="MSVRLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVD HQGKWLARGAYSPASQIRARVWTFDPSESIDIAFFSRRLQQAQKWRDWLAQKDGLDSY RLIAGESDGLPGITIDRFGNFLVLQLLSAGAEYQRAALITALQTLYPECAIYDRSDVA VRKKEGMELTHGLLTGELPPALLPIEEHGMNLLVDIHHGHKTAYYLDQRDSRLATRRY VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFV RDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGI LLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEGLYLKGFA CRVM" misc_feature complement(1016705..1017892) /locus_tag="SF0970" /note="23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI; Region: PRK15128" /db_xref="CDD:185082" gene 1017987..1018265 /locus_tag="SF0969" /db_xref="GeneID:1023958" CDS 1017987..1018265 /locus_tag="SF0969" /note="Code: C; COG: COG1254" /codon_start=1 /transl_table=11 /product="acylphosphatase" /protein_id="NP_706891.2" /db_xref="GeneID:1023958" /translation="MSKICIIAWIYGRVQGVGFRYTTQYEAKRLGLTGYAKNLDDGSV EVVACGEEGQVEKLMQWLKSGGPRSARVERVLSEPHHPSGELTDFRIR" misc_feature <1017987..1018262 /locus_tag="SF0969" /note="Region: Acylphosphatase; cl00551" /db_xref="CDD:444972" gene complement(1018262..1018648) /gene="yccK" /locus_tag="SF0971" /db_xref="GeneID:1026221" CDS complement(1018262..1018648) /gene="yccK" /locus_tag="SF0971" /note="Code: P; COG: COG2920" /codon_start=1 /transl_table=11 /product="sulfite reductase" /protein_id="NP_706892.3" /db_xref="GeneID:1026221" /translation="MRGFVFCYTAASLIKVVIIMLIFEGKEIETDTEGYLKESSQWSE PLAVVIAENEGISLSPEHWEVVRFVRDFYLEFNTSPAIRMLVKAMANKFGEEKGNSRY LYRLFPKGPAKQATKIAGLPKPVKCI" misc_feature complement(1018265..1018591) /gene="yccK" /locus_tag="SF0971" /note="sulfurtransferase TusE; Region: PRK11508" /db_xref="CDD:183167" gene complement(1018682..1019341) /gene="yccA" /locus_tag="SF0972" /db_xref="GeneID:1023915" CDS complement(1018682..1019341) /gene="yccA" /locus_tag="SF0972" /note="Code: R; COG: COG0670" /codon_start=1 /transl_table=11 /product="HflBKC-binding inner membrane protein" /protein_id="NP_706893.1" /db_xref="GeneID:1023915" /translation="MDRIVSSSHDRTSLLSTHKVLRNTYFLLSLTLAFSAITATASTV LMLPSPGLILTLVGMYGLMFLTYKTANKPTGIISAFAFTGFLGYILGPILNTYLSAGM GDVIAMALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMIANIFLQLPAL HLAISAVFILISSGAILFETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR D" misc_feature complement(1018685..1019341) /gene="yccA" /locus_tag="SF0972" /note="FtsH protease modulator YccA; Region: PRK10447" /db_xref="CDD:182469" gene complement(1019548..1019635) /locus_tag="SF4464" /db_xref="GeneID:3161804" tRNA complement(1019548..1019635) /locus_tag="SF4464" /product="tRNA-Ser" /codon_recognized="UCA" /db_xref="GeneID:3161804" gene 1020061..1021179 /gene="hyaA" /locus_tag="SF0973" /db_xref="GeneID:1023950" CDS 1020061..1021179 /gene="hyaA" /locus_tag="SF0973" /note="Code: C; COG: COG1740" /codon_start=1 /transl_table=11 /product="hydrogenase-1 small subunit" /protein_id="NP_706894.2" /db_xref="GeneID:1023950" /translation="MNNEETFYQAMRRQGVTRRSFLKYCSLAATSLGLGAGMAPKIAW ALENKPRIPVVWIHGLECTCCTESFIRSAHPLAKDVILSLISLDYDDTLMAAAGTQAE EVFEDIITQYNGKYILAVEGNPPLGEQGMFCISSGRPFIEKLKRAAAGASAIIAWGTC ASWGCVQAARPNPTQATPIDKVITDKPIIKVPGCPPIPDVMSAIITYMVTFDRLPDVD RMGRPLMFYGQRIHDKCYRRAHFDAGEFVQSWDDDAARKGYCLYKMGCKGPTTYNACS STRWNDGVSFPIQSGHGCLGCAENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV VAAAVGVHAVASSVDQRRRHNQQPTETEHQPGNEDKQA" misc_feature 1020064..1021140 /gene="hyaA" /locus_tag="SF0973" /note="hydrogenase (NiFe) small subunit (hydA); Region: hydA; TIGR00391" /db_xref="CDD:273053" gene 1021176..1022969 /gene="hyaB" /locus_tag="SF0974" /db_xref="GeneID:1023947" CDS 1021176..1022969 /gene="hyaB" /locus_tag="SF0974" /note="Code: C; COG: COG0374" /codon_start=1 /transl_table=11 /product="hydrogenase 1 large subunit" /protein_id="NP_706895.1" /db_xref="GeneID:1023947" /translation="MSTQYETQGYTINNAGRRLVVDPITRIEGHMRCEVNINDQNVIT NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIKVPDN ANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLDALKADPRKTSELAQSLSSWPKSSP GYFFDVQNRLKKFVEGGQLGIFRNGYWGHPQYKLPPEANLMGFAHYLEALDFQREIVK IHAVFGGKNPHPNWIVGGMPCAINIDESGAVGAVNMERLNLVQSIITRTADFINNVMI PDALAIGQFNKPWSEIGTGLSDKCVLSYGAFPDIANDFGEKSLLMPGGAVINGDFNNV LPVDLVDPQQVQEFVDHAWYRYPNDQVGRHPFDGITDPWYNPGDVKGSDTNIQQLNEQ ERYSWIKAPRWRGNAMEVGPLARTLIAYHKGDAATVESVDRMMSALNLPLSGIQSTLG RILCRAHEAQWAAGKLQYFFDKLMTNLKNGNLATASTEKWEPATWPTECRGVGFTEAP RGALGHWAAIRDGKIDLYQCVVPTTWNASPRDPKGQIGAYEAALMNTKMAIPEQPLEI LRTLHSFDPCLACSTHVLGDDGSELISVQVR" misc_feature 1021176..1022966 /gene="hyaB" /locus_tag="SF0974" /note="Ni/Fe-hydrogenase large subunit; Region: PRK10170" /db_xref="CDD:182281" gene 1022988..1023695 /gene="hyaC" /locus_tag="SF0975" /db_xref="GeneID:1023945" CDS 1022988..1023695 /gene="hyaC" /locus_tag="SF0975" /note="Code: C; COG: COG1969" /codon_start=1 /transl_table=11 /product="hydrogenase 1 b-type cytochrome subunit" /protein_id="NP_706896.1" /db_xref="GeneID:1023945" /translation="MQQKSDNVVSHYVFEAPVRIWHWLTVLCMAVLMVTGYFIGKPLP SVSGEATYLFYMGYIRLIHFSAGMIFTVVLLMRIYWAFVGNRYSRELFIVPVWRKSWW QGVWYEIRWYLFLAKRPSADIGHNPIAQAAMFGYFLMSVFMIITGFALYSEHSQYAIF APFRYVVEFFYWTGGNSMDIHSWHRLGMWLIGAFVIGHVYMALREDIMSDDTVISTMV NGYRSHKFGKISNKERS" misc_feature 1022988..1023692 /gene="hyaC" /locus_tag="SF0975" /note="Ni/Fe-hydrogenase b-type cytochrome subunit; Region: PRK10171" /db_xref="CDD:182282" gene 1023692..1024279 /gene="hyaD" /locus_tag="SF0976" /db_xref="GeneID:1023953" CDS 1023692..1024279 /gene="hyaD" /locus_tag="SF0976" /note="Code: C; COG: COG0680" /codon_start=1 /transl_table=11 /product="hydrogenase 1 maturation protease" /protein_id="NP_706897.1" /db_xref="GeneID:1023953" /translation="MSEQHVVVMGLGNLLWADEGFGVRVAERLYAHYHWPEYVEIVDG GTQGLNLLGYVESASHLLILDAIDYGLEPGTLRTYAGERIPAYLSAKKMSLHQNSFSE VLALADIRGHLPAHIALVGLQPAMLDDYGGSLSELAREQLPAAEQSALAQLAAWGSVP QPANESRCLNYDCLSMENYEGVRLRQYRMTQEEQG" misc_feature 1023692..1024276 /gene="hyaD" /locus_tag="SF0976" /note="hydrogenase 1 maturation protease; Provisional; Region: PRK10264" /db_xref="CDD:182345" misc_feature order(1023728..1023730,1023770..1023772,1023818..1023826) /gene="hyaD" /locus_tag="SF0976" /note="putative substrate-binding site [active]" /db_xref="CDD:99873" misc_feature order(1023746..1023748,1023884..1023886,1023977..1023979) /gene="hyaD" /locus_tag="SF0976" /note="nickel binding site [ion binding]; other site" /db_xref="CDD:99873" gene 1024276..1024674 /gene="hyaE" /locus_tag="SF0977" /db_xref="GeneID:1023902" CDS 1024276..1024674 /gene="hyaE" /locus_tag="SF0977" /codon_start=1 /transl_table=11 /product="hydrogenase-1 operon protein HyaE" /protein_id="NP_706898.1" /db_xref="GeneID:1023902" /translation="MSNDTPFDALWQRMLARGWTPVSESRLDDWLTQAPDGVVLLSSD PKRTPEVSDNPVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGN YRGVLNGIHPWAELINLMRGLVEPQQERAS" misc_feature 1024276..1024671 /gene="hyaE" /locus_tag="SF0977" /note="hydrogenase-1 operon protein HyaE; Provisional; Region: PRK11509" /db_xref="CDD:183168" gene 1024671..1025660 /gene="hyaF" /locus_tag="SF0978" /db_xref="GeneID:1027562" CDS 1024671..1025660 /gene="hyaF" /locus_tag="SF0978" /codon_start=1 /transl_table=11 /product="Hydrogenase-1 operon protein hyaF" /protein_id="NP_706899.1" /db_xref="GeneID:1027562" /translation="MSETFFHLLGPGTQPNDDSFSMNPLPITCQVNDEPSMAALEQCA HSPQVIALLNELQHQLSERQPPLGEVLAVDLLNLNADDRHFINTLLGEGEVSVRIQQA DDSKSEIQEAIFCGLWRVRRRRGEKLLEDKLEAGCAPLALWQAATQNLLPTDSLLPPP IDGLMNGLPLAHELLAHVRNPDAQPDSINLTQLPISEADRLFLSRLNGPGNIQIRTIG YGESYINATGLRHVWHLRCTDTLKGPLLESYEICPIPEVVLAAPEDLVDCAIRLTRYV NGWRELHPRKTGAQTSRRKVAGGQTGGWLRAAGVVAGGNAKSLADRFAVTAAH" misc_feature 1025166..1025486 /gene="hyaF" /locus_tag="SF0978" /note="HupH hydrogenase expression protein, C-terminal conserved region; Region: HupH_C; pfam04809" /db_xref="CDD:428133" gene 1026167..1027711 /gene="appC" /locus_tag="SF0980" /db_xref="GeneID:1023948" CDS 1026167..1027711 /gene="appC" /locus_tag="SF0980" /note="Code: C; COG: COG1271" /codon_start=1 /transl_table=11 /product="cytochrome bd-II oxidase subunit 1" /protein_id="NP_706901.2" /db_xref="GeneID:1023948" /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTG KTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSNYVGDIFGAPLAMEALM AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNLSALWILNANGWMQYPTGAHFD IDTLRMEMTSFSELVFNPVSQVKFVHTVMAGYVTGAMFIMAISAWYLLRGRERDVALR SFAIGSVFGTLAIIGTLQLGDSSAYEVAQVQPVKLAAMEGEWQTEPAPAPFHVVAWPE QDQERNAFAIKIPALLGILATHSLDKPVPGLKNLMAETYPRLQRGRMAWLLMQEISQG NREPHVLQAFRELEGDLGYGMLLSRYAPDMNHVTAAQYQAAMRGAIPQVAPVFWSFRI MVGCGSLLLLVMLIALVQTLRGKIDQHRWVLKMALWSLPLPWIAIEAGWFMTEFGRQP WAIQDILPTYSAHSALTTGQLAFSLIMIVGLYTLFLIAEVYLMQKYARLGPSAMQSEQ PTQQQG" misc_feature 1026167..1027708 /gene="appC" /locus_tag="SF0980" /note="cytochrome bd-II oxidase subunit 1; Provisional; Region: PRK15035" /db_xref="CDD:184995" gene 1027723..1028859 /gene="appB" /locus_tag="SF0981" /db_xref="GeneID:1023937" CDS 1027723..1028859 /gene="appB" /locus_tag="SF0981" /note="Code: C; COG: COG1294" /codon_start=1 /transl_table=11 /product="cytochrome bd-II oxidase subunit 2" /protein_id="NP_706902.1" /db_xref="GeneID:1023937" /translation="MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDD ERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPL AFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGS FWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLA GYWLWVGIDGFVLLAQDANGPSHPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPL LTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQL TLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNKNELY" misc_feature 1027723..1028856 /gene="appB" /locus_tag="SF0981" /note="cytochrome d ubiquinol oxidase subunit II; Region: PRK15028" /db_xref="CDD:184988" gene 1029043..1030341 /gene="appA" /locus_tag="SF0982" /db_xref="GeneID:1023932" CDS 1029043..1030341 /gene="appA" /locus_tag="SF0982" /codon_start=1 /transl_table=11 /product="phosphoanhydride phosphorylase" /protein_id="NP_706903.2" /db_xref="GeneID:1023932" /translation="MKAILIPFLSLLIPLTPQSAFAQSEPELKLESMVIVSRHGVRAP TKATQLMQDVTPDAWPTWPVKLGWLTPRGGELIAYLGHYQRQRLVADGLLAKKGCPQS AQVAIIADVDERTRKTGEAFAAGLAPDCAITVHTQADTSSPDPLFNPLKTGVCQLDNA NVTDAILCRAGGSIADFTGHRQTVFRELERVLNFPQSNLCLNREKQDESCSLTQALPS ELKVSADNVSLTGAVSLASMLTEIFLLQQAQGMPEPGWGRITDSHQWNTLLSLHNAQF YLLQRTPEVARSRATPLLDLIMAALTPHPPQKQAYGVTLPTSVLFIAGHDTNLANLGG ALELNWTLPGQPDNTPPGGELVFERWRRLSDNSQWIQVSLVFQTLQQMRDKTPLSLNT PPGEVKLTLAGCEERNAQGMCSLAGFTQIVNEARIPACSL" misc_feature 1029043..1030338 /gene="appA" /locus_tag="SF0982" /note="AppA family phytase/histidine-type acid phosphatase; Region: PRK10172" /db_xref="CDD:182283" misc_feature order(1029154..1029159,1029166..1029168,1029382..1029384, 1030015..1030020) /gene="appA" /locus_tag="SF0982" /note="catalytic core [active]" /db_xref="CDD:132717" gene complement(1030456..1032402) /locus_tag="SF0983" /db_xref="GeneID:1023956" CDS complement(1030456..1032402) /locus_tag="SF0983" /note="Code: N; COG: COG3206" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706904.1" /db_xref="GeneID:1023956" /translation="MIPNSSPESAPEIQLLQSRMILGKTIAELNLRDIVEQKYFPIVG RGWARLTKEKLGELAISWMHIPQLNGQDQQLTLTVGENGHYTLEGEEFTVNGMVGQRL EKDGVALTIADIKAKPGTQFVLSQRTELEAINALQETFTVSERSKESGMLELTMTGDD PQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQ RDSVDLNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPTYRALLEKRQTLEQE RKRLNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSAIGNVRIIDP AVTQPQPVKPKKALNVVLGFILGLFISVSAVLARAMLRRGVEAPEQLEEHGISVYSTI PMSEWLDKRTRLRKKNLFSNQQRHRTKNIPFLAVDNPADSAVEAVRALRTSLHFAMME TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLRRGYSHNLFTVSNEHG LSEYLAGKDELNKVIQHFGKGDFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLV IVDTPPMLAVSNAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNG VIKRASTAYSYGYNYYGYSYSEKE" misc_feature complement(1030459..1032402) /locus_tag="SF0983" /note="tyrosine-protein kinase; Region: PRK09841" /db_xref="CDD:182106" gene complement(1032642..1033100) /gene="yccY" /locus_tag="SF0984" /db_xref="GeneID:1023936" CDS complement(1032642..1033100) /gene="yccY" /locus_tag="SF0984" /note="Code: T; COG: COG0394" /codon_start=1 /transl_table=11 /product="phosphatase" /protein_id="NP_706905.3" /db_xref="GeneID:1023936" /translation="MDSNMAQLKFNSILVVCTGNICRSPIGERLLRKRLPGVKVKSAG VHGLVKHPADATAADVAANHGVSLEGHAGRKLTAEMARNYDLILAMESEHIAQVTAIA PEVRGKTMLFGQWLEQKEIPDPYRKSQDAFEHVYSMLERASQEWAKRLSR" misc_feature complement(1032645..1033076) /gene="yccY" /locus_tag="SF0984" /note="phosphotyrosine-protein phosphatase; Provisional; Region: etp; PRK11391" /db_xref="CDD:138553" misc_feature complement(order(1032726..1032728,1032732..1032734, 1033029..1033052)) /gene="yccY" /locus_tag="SF0984" /note="active site" /db_xref="CDD:319971" gene complement(1033076..1034215) /gene="yccZ" /locus_tag="SF0985" /db_xref="GeneID:1023946" CDS complement(1033076..1034215) /gene="yccZ" /locus_tag="SF0985" /note="Code: M; COG: COG1596" /codon_start=1 /transl_table=11 /product="polysaccharide export protein Wza" /protein_id="NP_706906.2" /db_xref="GeneID:1023946" /translation="MKKNIFKFSVLTLAVLSLTACTLVPGQNLSTSNKDVIELPDNQY DLDKMVNIYPVTPGLIDQLRAKPIMSQANPELEQQIANYEYRIGIGDVLMVTVWDHPE LTTPAGQYRSASDTGNWVNADGAIFYPYIGRLKVAGKTLTQVRNEITARLDSVIESPQ VDVSVAAFRSQKAYVTGEVSKSGQQPITNIPLTIMDAINAAGGLTADADWRNVVLTQN GVKTKVNLYALMQRGDLRQNKLLHPGDILFIPRNDDLKVFVMGEVGKQSTLKMDRSGM TLAEALGNAEGMNQDVADATGIFVIRATQNKQNGKIANIYQLNAKDASAMILGTEFQL EPYDIVYVTTAPLARWNRVISLLVPTISGVHDLTETSRWIQTWPN" misc_feature complement(1033085..1034215) /gene="yccZ" /locus_tag="SF0985" /note="polysaccharide export protein Wza; Provisional; Region: PRK15078" /db_xref="CDD:237903" gene complement(1034261..1036357) /gene="ymcA" /locus_tag="SF0986" /db_xref="GeneID:1026230" CDS complement(1034261..1036357) /gene="ymcA" /locus_tag="SF0986" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706907.1" /db_xref="GeneID:1026230" /translation="MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQ MPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGD QSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMA WGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPL RLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTN FNDLRPALRDTPKPAWQPAPESEGLQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMS GQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAG TAPGKSEQLQQQRVEAEDLSAFGRCYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGL MSSARYWFTDHLLLDDGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLN NLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDASWALGVDVNYVKQRDWD NMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKLFDSGVAVG VWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRK YQLDPMTAEREVPVGQ" misc_feature complement(1034285..1036261) /gene="ymcA" /locus_tag="SF0986" /note="Exopolysaccharide biosynthesis protein YbjH; Region: YjbH; pfam06082" /db_xref="CDD:428757" gene complement(1036357..1037103) /gene="ymcB" /locus_tag="SF0987" /db_xref="GeneID:1023925" CDS complement(1036357..1037103) /gene="ymcB" /locus_tag="SF0987" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706908.1" /db_xref="GeneID:1023925" /translation="MNKLQSYFIASVLYVMTPHAFAQGTVTIYLPSEQQTLSVGPVEN VVQLVTQPQLRDRLWWPGALLTDSAAKAKALKDYQHVMAQLASWEAEADDDVAATIKS VRQQLLNLNITGRLPVKLDPDFVRVDENSNPPLVGDYTLYTVQRPVTITLLGAVSGAG QLPWQAGRSVTDYLQDHPRLAGADKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQL WLGFSAHVLPEKYADLNDQIVSVLTQRVPD" misc_feature complement(1036666..1037040) /gene="ymcB" /locus_tag="SF0987" /note="Capsule biosynthesis GfcC, N-terminal; Region: Caps_syn_GfcC_N; pfam20616" /db_xref="CDD:466765" misc_feature complement(1036363..1036632) /gene="ymcB" /locus_tag="SF0987" /note="Capsule biosynthesis GfcC C-terminal; Region: Caps_syn_GfcC_C; pfam06251" /db_xref="CDD:461862" gene complement(1037100..1037744) /gene="ymcC" /locus_tag="SF0988" /db_xref="GeneID:1023951" CDS complement(1037100..1037744) /gene="ymcC" /locus_tag="SF0988" /codon_start=1 /transl_table=11 /product="regulator" /protein_id="NP_706909.1" /db_xref="GeneID:1023951" /translation="MRPLILSIFALFLAGCTHSQQSMVDTFRASLFDNQDITVAAQQI QALPYSTMYLRLNEGQRIFVVLGYIEQEQSKWLSQDNAMLVTHNGRLLKTVKLNNNLL EVTNPGRAPLRNALAIKDGSRWTRDILWSEDNHFRSATLSSTFSFAGLETLNIAGHNV LCNVWQEEVTSTLPEKQWQNTFWVDSATGQVRQSRQMLGAGVIPVEMTFLKPAP" misc_feature complement(1037115..1037672) /gene="ymcC" /locus_tag="SF0988" /note="Group 4 capsule polysaccharide lipoprotein gfcB, YjbF; Region: YjbF; pfam11102" /db_xref="CDD:431654" gene complement(1037851..1038174) /gene="ymcD" /locus_tag="SF0989" /db_xref="GeneID:1023940" CDS complement(1037851..1038174) /gene="ymcD" /locus_tag="SF0989" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706910.2" /db_xref="GeneID:1023940" /translation="MNKGKVMKHKLSAILMAFMLTTPAAFAAPEAANGTEATTGTTGT TTTTTGATTTAATTSGVAAGAVGTATVVGVATAVGVATLAVVAANDSGDGGSHNTSTT TSTTR" gene complement(1038598..1038810) /gene="cspH" /locus_tag="SF0990" /db_xref="GeneID:1023928" CDS complement(1038598..1038810) /gene="cspH" /locus_tag="SF0990" /note="Code: K; COG: COG1278" /codon_start=1 /transl_table=11 /product="cold shock-like protein CspH" /protein_id="NP_706911.1" /db_xref="GeneID:1023928" /translation="MSRKMTGIVKTFDRKSGKGFIIPSDGRKEVQVHISAFTPRDAEV LIPGLRVEFCRVNGLRGPTAANVYLS" misc_feature complement(1038601..1038810) /gene="cspH" /locus_tag="SF0990" /note="Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains...; Region: S1_like; cl09927" /db_xref="CDD:471952" misc_feature complement(order(1038631..1038633,1038718..1038720, 1038751..1038753,1038778..1038780)) /gene="cspH" /locus_tag="SF0990" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature complement(order(1038712..1038723,1038742..1038762)) /gene="cspH" /locus_tag="SF0990" /note="RNA-binding motif [active]" /db_xref="CDD:239905" gene 1039108..1039308 /gene="cspG" /locus_tag="SF0991" /db_xref="GeneID:1023934" CDS 1039108..1039308 /gene="cspG" /locus_tag="SF0991" /note="Code: K; COG: COG1278" /codon_start=1 /transl_table=11 /product="cold shock protein CspG" /protein_id="NP_706912.2" /db_xref="GeneID:1023934" /translation="MTGLVKWFNADKGFGFITPDDGSKDVFVHFTAIQSNEFRTLNEN QKVEFSIEQGQRGPAAANVVTL" misc_feature 1039108..1039305 /gene="cspG" /locus_tag="SF0991" /note="Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains...; Region: S1_like; cl09927" /db_xref="CDD:471952" misc_feature order(1039126..1039128,1039153..1039155,1039186..1039188, 1039273..1039275) /gene="cspG" /locus_tag="SF0991" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature order(1039144..1039164,1039183..1039194) /gene="cspG" /locus_tag="SF0991" /note="RNA-binding motif [active]" /db_xref="CDD:239905" gene 1039482..1039712 /gene="ymcE" /locus_tag="SF0992" /db_xref="GeneID:1023974" CDS 1039482..1039712 /gene="ymcE" /locus_tag="SF0992" /codon_start=1 /transl_table=11 /product="cold shock gene" /protein_id="NP_706913.1" /db_xref="GeneID:1023974" /translation="MRRWISQNNIRLPRGAFFISALFFFNAVCIVSDNLLIIESFGKM AYNISYLTRVPGTNTLLACCCLSRPDEVNSEY" misc_feature 1039482..1039709 /gene="ymcE" /locus_tag="SF0992" /note="Putative antitoxin of bacterial toxin-antitoxin system; Region: YmcE_antitoxin; cl27789" /db_xref="CDD:332610" gene 1039702..1039875 /gene="yccL" /locus_tag="SF0993" /db_xref="GeneID:1023938" CDS 1039702..1039875 /gene="yccL" /locus_tag="SF0993" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706914.1" /db_xref="GeneID:1023938" /translation="MNIEELKKQAETEIADFIAQKIAELNKNTGKEVSEIRFIAREKM TGLESYDVKIKIM" misc_feature 1039702..1039863 /gene="yccL" /locus_tag="SF0993" /note="GnsA/GnsB toxin of bacterial toxin-antitoxin system; Region: GnsAB_toxin; pfam08178" /db_xref="CDD:285401" gene complement(1039924..1040997) /gene="yccM" /locus_tag="SF0994" /db_xref="GeneID:1023918" CDS complement(1039924..1040997) /gene="yccM" /locus_tag="SF0994" /note="Code: C; COG: COG0348" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706915.2" /db_xref="GeneID:1023918" /translation="MAEKKRTRWQRRPGTTGGKLPWNDWRNATTWRKATQFLLLAMNI YIAITFWYWVRYYETAGSTTFVARPGGIEGWLPIAGLMNLKYSLATGQLPSVHAAAML LLVAFIVISLLLKKAFCSWLCPVGTLSELIGDLGNKLFGRQCVLPRWLDIPLRGVKYL LLSLFLYIALLMPAQAIHYFMLSPYSVVMDVKMLDFFRHMGTATLISVTVLLIASLFI RHAWCRYLCPYGALMGVVSLLSPFKIRRNAESCIDCGKCAKKCPSRIPVDKLIQVRTV ECTGCMTCVESCPVASTLTFSLQKPAANKKAFALSGWLMTLLVLGIMFAVIGYAMYAG VWQSPVPEELYRRLIPQAPMIGH" misc_feature complement(1040131..1040943) /gene="yccM" /locus_tag="SF0994" /note="Polyferredoxin NapH [Energy production and conversion]; Region: NapH; COG0348" /db_xref="CDD:440117" gene complement(1041099..1043528) /locus_tag="SF0995" /db_xref="GeneID:1023935" CDS complement(1041099..1043528) /locus_tag="SF0995" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="histidine protein kinase/phosphatase" /protein_id="NP_706916.1" /db_xref="GeneID:1023935" /translation="MLQALREQGFDTTAIEQQEQEISRSLRQQGELVGRRLQLRQQQR QLSQQIAAADEIARLEQGQANNATTSAGATQAGIYDLIEQDQRQAAESALDRLIDIDL EYVNQMNELRLSALRVQQMVMNLGLEQIQKNAPTLEKQLNNAVKILQRRQIRIEDPGV RAQVATTLTTVSQYSDLLALFQQDSEISNHLQTLAQNNIAQFAQFSSEVSQLVDTIEL HNQHGLAHLEKASARGQYSLLLLGMVSLCALIMILWRVVYRSFTRPLAEQTQALQRLL DGDIDSPFPETAGVRELDTIGRLMDAFRSSVHALNRHREQLAAQVKARTAELQELVIE HRQARAEAEKASQAKSAFLTAMSHEIRTPLYGILGTAQLLADNPALNAQRDDLQAITD SGESLLTILNDILDYSAIEAGGKNVSVSDEPFEPRPLLESTLQLMSGRVKGRPIRLAT AIADDVPSALMGDPRRIRQVITNLLSNALRFTDEGHIILRSRTDGEQWLVEVEDSGCG IDPAKLAEIFQPFVQVSGKRGGTGLGLTISSRLAQAMGGELSATSTPEVGSCFCLRLP LRVATAPVPKTANQAVRLDGLRLLLIEDNPLTQRITVEMLNTSGAQVVAIGNAAQALE TLQNSEPFAAALVDFDLPDIDGITLARQLAQQYPSLVLIGFSAHVIDETLRQRTSSLF RGIIPKPVPREVLGQLLAHYLQLQANNDLPLDVSQLNEDAQLMGTEKIHEWLALFKQH ALPLLDEIDIARASQDSEKIKRAAHQLKSSCSSLGMRSASQLCAQLEQQPLSAPLPHE EITRSVAALEA" misc_feature complement(1041102..1043528) /locus_tag="SF0995" /note="hybrid sensory histidine kinase TorS; Provisional; Region: PRK11466" /db_xref="CDD:236914" gene 1043893..1044921 /gene="torT" /locus_tag="SF0996" /db_xref="GeneID:1023967" CDS 1043893..1044921 /gene="torT" /locus_tag="SF0996" /note="Code: G; COG: COG1879" /codon_start=1 /transl_table=11 /product="TMAO reductase system periplasmic protein TorT" /protein_id="NP_706917.1" /db_xref="GeneID:1023967" /translation="MRVLLFLLLSLFMLSAFSADNLLRWHDAQHFTVQASMPLKAKRV WKLCALYPSLKDSYWLSLNYGMQEAARRYGVDLKVLEAGGYSQLATQQAQIDQCKQWG AEAILLGSSTTSFPDLQKQVANLPVIELVNALDDPQVKSRVGVPWFQMGYQPGRYLVQ WAHGKPLNVLLMPGPDNAGGSKEMVEGFRAAIAGSPVRIVDIALGDNDIEIQRNLLQE MLERHPEIDVVAGTAIAAEAAMGEGRNLKTPLTVVSFYLSHQVYRGLKRGRVIMAASD QMVWQGELAVEQAIRQLQGQSVSDNVSPPILVLTPKNADREHIRRSLSPGGFRPVYFY QHTSAAKK" misc_feature 1043938..1044897 /gene="torT" /locus_tag="SF0996" /note="TMAO reductase system periplasmic protein TorT; Provisional; Region: PRK10936" /db_xref="CDD:236801" gene complement(1044894..1045586) /gene="torR" /locus_tag="SF0998" /db_xref="GeneID:1023959" CDS complement(1044894..1045586) /gene="torR" /locus_tag="SF0998" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator TorR" /protein_id="NP_706918.1" /db_xref="GeneID:1023959" /translation="MPHHIVIVEDKPVTQARLQSYFTQEGYTVSVTASGAGLREIMQN QPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTK PLELRELVVRVKNLLWRIDLARQAQPHTQDYCYRFAGYCLNVSRHTLERDGEPIKLTR AEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQ HGEGYFLAADVC" misc_feature complement(1044927..1045586) /gene="torR" /locus_tag="SF0998" /note="two-component system response regulator TorR; Region: PRK10766" /db_xref="CDD:182711" gene 1045673..1046845 /gene="torC" /locus_tag="SF0997" /db_xref="GeneID:1027565" CDS 1045673..1046845 /gene="torC" /locus_tag="SF0997" /note="Code: C; COG: COG3005" /codon_start=1 /transl_table=11 /product="trimethylamine N-oxide reductase cytochrome c-type subunit" /protein_id="NP_706919.2" /db_xref="GeneID:1027565" /translation="MRKLWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTST TEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQ TFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHARQHPEAARQM KVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAK GDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGD VQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNECHG APEIAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK" misc_feature 1045673..1046842 /gene="torC" /locus_tag="SF0997" /note="pentaheme c-type cytochrome TorC; Region: PRK15032" /db_xref="CDD:184992" gene 1046845..1049385 /gene="torA" /locus_tag="SF0999" /pseudo /db_xref="GeneID:1023986" misc_feature 1046845..1049385 /gene="torA" /locus_tag="SF0999" /note="Similar to Escherichia coli K12 trimethylamine N-oxide reductase subunit gi: 1787231 (849 aa). BLAST with identity of 98% in 847 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo misc_feature 1049382..1050758 /note="Similar to Escherichia coli K12 part of trimethylamine-N-oxide oxidoreductase gi: 1787232 (200 aa). BLAST with identity of 97% in 459 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element complement(1049573..1050340) /mobile_element_type="insertion sequence:IS1" gene complement(1049588..1049983) /gene="insB" /locus_tag="SF1001" /db_xref="GeneID:1023966" CDS complement(1049588..1049983) /gene="insB" /locus_tag="SF1001" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_706920.1" /db_xref="GeneID:1023966" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1049591..1049980) /gene="insB" /locus_tag="SF1001" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1050010..1050285) /gene="insA" /locus_tag="SF1002" /db_xref="GeneID:1023979" CDS complement(1050010..1050285) /gene="insA" /locus_tag="SF1002" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_706921.1" /db_xref="GeneID:1023979" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPDTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1050013..1050264) /gene="insA" /locus_tag="SF1002" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(1050851..1051156) /gene="yccD" /locus_tag="SF1003" /db_xref="GeneID:1023973" CDS complement(1050851..1051156) /gene="yccD" /locus_tag="SF1003" /codon_start=1 /transl_table=11 /product="chaperone-modulator protein CbpM" /protein_id="NP_706922.2" /db_xref="GeneID:1023973" /translation="MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWV FDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP" misc_feature complement(1050854..1051156) /gene="yccD" /locus_tag="SF1003" /note="chaperone modulator CbpM; Region: PRK10265" /db_xref="CDD:182346" gene complement(1051156..1052076) /gene="cbpA" /locus_tag="SF1004" /db_xref="GeneID:1023975" CDS complement(1051156..1052076) /gene="cbpA" /locus_tag="SF1004" /note="Code: O; COG: COG2214" /codon_start=1 /transl_table=11 /product="curved DNA-binding protein CbpA" /protein_id="NP_706923.1" /db_xref="GeneID:1023975" /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA RFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIF GQHARQSRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTL NVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVS PWEAALGTKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMP PKPDENTAALWQQLADAQSSFDPRKDWGKA" misc_feature complement(1051159..1052076) /gene="cbpA" /locus_tag="SF1004" /note="curved DNA-binding protein; Region: PRK10266" /db_xref="CDD:182347" gene 1052337..1053593 /gene="yccE" /locus_tag="SF1005" /db_xref="GeneID:1023970" CDS 1052337..1053593 /gene="yccE" /locus_tag="SF1005" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706924.1" /db_xref="GeneID:1023970" /translation="MGSNIHGISCTANNYLKQAWNDIKNEYEKNQTYSITLFENTLVC FMRLYNELRRKVNEEDTPCLECESLEKEFEEMQNDNDLSLFMRTLRTNDTQIYSGVSG GITYTIQYVQDVDIVRVSLPGRGSESITDFKGYYWYGFMEYIENINACDDVFSEYCLD NENMSIQPEQINMPGISDLDTGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAIL VLKEHEYSWALGSHKTQKQVYEEFIKIVDKQTIEALVDTAFYNLREDVKTLFGVDLQS DNKIQGVGSFMSWSFLFFKKQFIDSCLNDKKCILHLPEFIFNDNKNLLALDTDTSDRI KAVKNFLAVLSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLTNTGNHYDVYLPP ELFSQAYKLKNKEMNAQLDYLNRYAT" misc_feature 1052340..1053590 /gene="yccE" /locus_tag="SF1005" /note="YccE family protein; Region: PRK09784" /db_xref="CDD:182074" gene 1053886..1055127 /gene="agp" /locus_tag="SF1006" /db_xref="GeneID:1023971" CDS 1053886..1055127 /gene="agp" /locus_tag="SF1006" /codon_start=1 /transl_table=11 /product="glucose-1-phosphatase/inositol phosphatase" /protein_id="NP_706925.2" /db_xref="GeneID:1023971" /translation="MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRA PLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGIVKSGECP PPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPMITDDSAAF SEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQE PGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTS PEVARNVAKPLVSYIDKALVTDRASAPKITVLVGHDSNIASLLTALDFKPYQLHDQNE RTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCP IDANGFCPMDKFDSVLNEAVK" misc_feature 1053886..1055124 /gene="agp" /locus_tag="SF1006" /note="glucose-1-phosphatase/inositol phosphatase; Provisional; Region: PRK10173" /db_xref="CDD:182284" misc_feature order(1054000..1054005,1054012..1054014,1054231..1054233, 1054816..1054821) /gene="agp" /locus_tag="SF1006" /note="catalytic core [active]" /db_xref="CDD:132717" gene complement(1055165..1055392) /gene="yccJ" /locus_tag="SF1007" /db_xref="GeneID:1023969" CDS complement(1055165..1055392) /gene="yccJ" /locus_tag="SF1007" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706926.1" /db_xref="GeneID:1023969" /translation="MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWE EGSDEVLVKAFAKTDKDSLFWGEQTIERKNV" misc_feature complement(1055168..1055392) /gene="yccJ" /locus_tag="SF1007" /note="hypothetical protein; Provisional; Region: PRK10174" /db_xref="CDD:182285" gene complement(1055413..1056009) /gene="wrbA" /locus_tag="SF1008" /db_xref="GeneID:1023965" CDS complement(1055413..1056009) /gene="wrbA" /locus_tag="SF1008" /note="Code: R; COG: COG0655" /codon_start=1 /transl_table=11 /product="NAD(P)H:quinone oxidoreductase" /protein_id="NP_706927.1" /db_xref="GeneID:1023965" /translation="MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMP PQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGA LYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPY GATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG" misc_feature complement(1055416..1056009) /gene="wrbA" /locus_tag="SF1008" /note="NAD(P)H:quinone oxidoreductase; Provisional; Region: PRK03767" /db_xref="CDD:179647" gene complement(1056571..1057965) /gene="ycdG" /locus_tag="SF1009" /db_xref="GeneID:1023960" CDS complement(1056571..1057965) /gene="ycdG" /locus_tag="SF1009" /note="Code: F; COG: COG2233" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_706928.1" /db_xref="GeneID:1023960" /translation="MVRSQLSRADAPCLLTSLRRQLMAMFGFPHWQLKSTSTESGVVA PDERLPFAQTAVMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRV PSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVMKIGTRWI ERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQR LLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSYAAWFGLPHFSTPGFNGQAMMLIAP VAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIG VMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGAR IWVQNRVDLSQNANLIMVAVTFVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRR LVDVPPPEVVHQEP" misc_feature complement(1056613..1057899) /gene="ycdG" /locus_tag="SF1009" /note="pyrimidine utilization transport protein G; Region: RutG; TIGR03616" /db_xref="CDD:132655" gene complement(1057920..1058378) /locus_tag="SF1010" /db_xref="GeneID:1023968" CDS complement(1057920..1058378) /locus_tag="SF1010" /note="Code: R; COG: COG1853" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706929.2" /db_xref="GeneID:1023968" /translation="MSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRG ASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEAL VSFDCRISQVVSVGTHDILFCAIEAIHRHTTPYGLVWFDRSYHALMRPAC" misc_feature complement(1057938..1058378) /locus_tag="SF1010" /note="pyrimidine utilization flavin reductase protein F; Region: RutF; TIGR03615" /db_xref="CDD:132654" gene complement(1058425..1059015) /locus_tag="SF1011" /db_xref="GeneID:1023955" CDS complement(1058425..1059015) /locus_tag="SF1011" /note="Code: C; COG: COG0778" /codon_start=1 /transl_table=11 /product="malonic semialdehyde reductase" /protein_id="NP_706930.1" /db_xref="GeneID:1023955" /translation="MNEAVSPGALSTLFTDARTHNGWRETPVSDETLQELYALMKWGP TSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPLLFP HGDARSWFTSSPQLAEETAFRNSSMQAAYLIVACRALGLDTGPMSGFDRQHVDDAFFA GSTLKSNLLINIGYGDSSKLFARLPRLSFEEACGLL" misc_feature complement(1058428..1059012) /locus_tag="SF1011" /note="malonic semialdehyde reductase; Provisional; Region: PRK05365" /db_xref="CDD:180040" misc_feature complement(order(1058542..1058544,1058572..1058577, 1058611..1058616,1058623..1058628,1058635..1058640, 1058644..1058646,1058845..1058862,1058866..1058868, 1058872..1058874,1058878..1058880,1058884..1058889, 1058896..1058898,1058902..1058907,1058911..1058913, 1058965..1058967,1058971..1058973)) /locus_tag="SF1011" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:380323" misc_feature complement(order(1058572..1058577,1058875..1058877, 1058953..1058955,1058959..1058961,1058965..1058967)) /locus_tag="SF1011" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:380323" gene complement(1059025..1059825) /locus_tag="SF1012" /db_xref="GeneID:1023981" CDS complement(1059025..1059825) /locus_tag="SF1012" /note="Code: R; COG: COG0596" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="NP_706931.2" /db_xref="GeneID:1023981" /translation="MKLSLSSPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVC YDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIERYAVVGHALGALVGMQLALDYP ASVTMLVSVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPR LEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPTACSS ELHAALPDSQKMVMPYGGHACNVTDPETFNALLLNGLASLLHHREAAL" misc_feature complement(1059079..1059822) /locus_tag="SF1012" /note="pyrimidine utilization protein D; Region: RutD; TIGR03611" /db_xref="CDD:211851" gene complement(1059833..1060219) /locus_tag="SF1013" /db_xref="GeneID:1027563" CDS complement(1059833..1060219) /locus_tag="SF1013" /note="Code: J; COG: COG0251" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706932.1" /db_xref="GeneID:1027563" /translation="MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLF ADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKP ARFYIQCGLVKPDALVEIATIAHIAK" misc_feature complement(1059839..1060219) /locus_tag="SF1013" /note="YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cl10015" /db_xref="CDD:447879" misc_feature complement(order(1059851..1059853,1059857..1059859, 1059863..1059865,1059893..1059916,1059941..1059943, 1059950..1059952,1059983..1059985,1059989..1059991, 1059995..1060000,1060004..1060006,1060124..1060129, 1060133..1060135,1060139..1060141,1060148..1060150, 1060154..1060156,1060163..1060168)) /locus_tag="SF1013" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100004" misc_feature complement(order(1059863..1059865,1059908..1059910, 1059950..1059952,1059962..1059964,1060166..1060168)) /locus_tag="SF1013" /note="putative active site [active]" /db_xref="CDD:100004" gene complement(1060231..1060965) /locus_tag="SF1014" /db_xref="GeneID:1023952" CDS complement(1060231..1060965) /locus_tag="SF1014" /note="Code: Q; COG: COG1335" /codon_start=1 /transl_table=11 /product="synthetase" /protein_id="NP_706933.1" /db_xref="GeneID:1023952" /translation="MPRPSLCADSGGGMMTTLTARPEAITFDPQQSAQIVVDMQNAYA TPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPN FHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDS ILRSRGIRHLVFTGIATNVCVESTLRDGFFLEHFGVVLEDATHQAGPEFAQKAALFNI ETFFGWVSDVETFCDALSPTSFARIA" misc_feature complement(1060240..1060917) /locus_tag="SF1014" /note="pyrimidine utilization protein B; Region: RutB; TIGR03614" /db_xref="CDD:163356" misc_feature complement(order(1060426..1060428,1060525..1060527, 1060852..1060854)) /locus_tag="SF1014" /note="catalytic triad [active]" /db_xref="CDD:238245" misc_feature complement(1060438..1060443) /locus_tag="SF1014" /note="conserved cis-peptide bond [active]" /db_xref="CDD:238245" gene complement(1060923..1062071) /locus_tag="SF1015" /db_xref="GeneID:1023976" CDS complement(1060923..1062071) /locus_tag="SF1015" /note="Code: C; COG: COG2141" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706934.2" /db_xref="GeneID:1023976" /translation="MQDAAPRLTFTLRDEERLMMKIGVFVPIGNNGWLISTHAPQYMP TFELNKAIAQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQI YATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRY DYLTEYVQVLRDLWGTGKSDFKGDFFTMNDCRVSPQPSIPMKVICAGQSDAGMAFSAQ YADFNFCFGKGVNTPTAFAPTAARMKQATEQTGRDVGSYVLFMVIADETDDATRAKWE HYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARML DEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLSALTQEVA" misc_feature complement(1060950..1062014) /locus_tag="SF1015" /note="pyrimidine utilization protein A; Region: RutA; TIGR03612" /db_xref="CDD:163355" misc_feature complement(order(1061289..1061291,1061295..1061297, 1061400..1061402,1061442..1061447,1061595..1061597, 1061664..1061666,1061823..1061825,1061985..1061987, 1061997..1061999)) /locus_tag="SF1015" /note="active site" /db_xref="CDD:238527" misc_feature complement(order(1061493..1061498,1061502..1061513, 1061634..1061639,1061646..1061648,1061697..1061699, 1061706..1061708,1061715..1061720,1061727..1061732, 1061736..1061738,1061787..1061789,1061796..1061801, 1061808..1061810,1061817..1061834)) /locus_tag="SF1015" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238527" misc_feature complement(1061754..1061759) /locus_tag="SF1015" /note="non-prolyl cis peptide bond [active]" /db_xref="CDD:238527" misc_feature complement(order(1061241..1061258,1061277..1061288, 1061478..1061516,1061598..1061600,1061610..1061615, 1061634..1061660)) /locus_tag="SF1015" /note="insertion regions; other site" /db_xref="CDD:238527" gene 1062302..1062940 /gene="ycdC" /locus_tag="SF1016" /db_xref="GeneID:1024012" CDS 1062302..1062940 /gene="ycdC" /locus_tag="SF1016" /note="Code: K; COG: COG1309" /codon_start=1 /transl_table=11 /product="HTH-type transcriptional regulator RutR" /protein_id="NP_706935.1" /db_xref="GeneID:1024012" /translation="MTQGAVKTTGKRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQI AELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKL EVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKALIDEKSALIAGWVKSGKLAPIDPQ HLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR" misc_feature 1062302..1062937 /gene="ycdC" /locus_tag="SF1016" /note="HTH-type transcriptional regulator RutR; Provisional; Region: PRK15008" /db_xref="CDD:184970" mobile_element complement(1063047..1064875) /mobile_element_type="insertion sequence:IS91" gene complement(1063235..1064422) /locus_tag="SF1017" /db_xref="GeneID:1023961" CDS complement(1063235..1064422) /locus_tag="SF1017" /codon_start=1 /transl_table=11 /product="insertion sequence IS91 transposase" /protein_id="NP_706936.1" /db_xref="GeneID:1023961" /translation="MLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTT LMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPYCPWQHIVF TLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQADVEPGIFTVIHTWGRDQQWHPHI HLSTTAGGVTSGHTWKNLYFYARKVMSMWRYRITRLLSRKYPYLVMPDALAAEGSSKR EWNRFLDTHYRRGWNVNVSRVMDNATHVAVYFGSYLKKPPVPMSRLEHYAGQDEIGLR YNSHRTKREEYLLMSGDESMERFSWHVADKGFRMVRYYVFLSPAKRRLLEEVVYIITE TVRKTAMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMR WCG" misc_feature complement(1063295..1064410) /locus_tag="SF1017" /note="IS91 family transposase; Region: transpos_IS91; NF033538" /db_xref="CDD:468069" gene complement(1064422..1064844) /locus_tag="SF1018" /db_xref="GeneID:1026246" CDS complement(1064422..1064844) /locus_tag="SF1018" /codon_start=1 /transl_table=11 /product="insertion sequence IS91 protein" /protein_id="NP_706937.1" /db_xref="GeneID:1026246" /translation="MVCNYRYKNRQCHCLSGGYMARSAKPRKRKPASQRSKLPRYVVK LHEDDFFDEEDAEVLRFDSFDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEI ARCTEREFATILAGISAGGMYCPECGTVHWPDGVAPPF" gene 1064943..1065551 /locus_tag="SF1019" /db_xref="GeneID:1023989" CDS 1064943..1065551 /locus_tag="SF1019" /note="Code: P; COG: COG0672" /codon_start=1 /transl_table=11 /product="cytochrome" /protein_id="NP_706938.1" /db_xref="GeneID:1023989" /translation="MAVIAVVILTWMVFWMRKVSRNVKVQLEQAVDSALQRGNHHGWA LVMMVFFAVAREGLESVFFLLAAFQQDVGIWPPLGAMLGLATAVVLGFLLYWGGIRLN LGAFFKWTSLFILFVAAGLAAGAIRAFHEAGLWNHFQEIAFDMSAVLSTHSLFGTLME GIFGYQEAPSVSEVAVWFIYLIPALVAFALPPRAGATASRSA" misc_feature <1064946..1065542 /locus_tag="SF1019" /note="Iron permease FTR1 family; Region: FTR1; cl00475" /db_xref="CDD:469785" gene 1065609..1066736 /gene="ycdO" /locus_tag="SF1020" /db_xref="GeneID:1023982" CDS 1065609..1066736 /gene="ycdO" /locus_tag="SF1020" /note="Code: P; COG: COG2822" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706939.1" /db_xref="GeneID:1023982" /translation="MTINFRRNALQLSVAALFSSAFMANAADVPQVKVTVTDKQCEPM TITVNAGKTQFIIQNHSQKALEWEILKGVMVVEERENIAPGFSQKMTANLQPGEYDMT CGLLTNPKGKLIVKGEATADAAQSDALLSLGGAITAYKAYVMAETTQLVTDTKAFTDA IKAGDIEKAKALYAPTRQHYERIEPIAELFSDLDGSIDAREDDYEQKAADPKFTGFHR LEKALFGDNTTKGMDQYAEQLYTDVVDLQKRISELAFPPSKVVGGAAGLIEEVAASKI SGEEDRYSHTDLWDFQANVEGSQKIVDLLRPQLQKANPELLAKVDANFKKVDTILAKY RTKDGFETYDKLTDADRNALKGPITALAEDLAQLRGVLGLD" misc_feature 1065609..1066733 /gene="ycdO" /locus_tag="SF1020" /note="inactive ferrous ion transporter periplasmic protein EfeO; Provisional; Region: PRK10378" /db_xref="CDD:236677" gene 1066742..1068007 /gene="ycdB" /locus_tag="SF1021" /db_xref="GeneID:1026238" CDS 1066742..1068007 /gene="ycdB" /locus_tag="SF1021" /note="Code: P; COG: COG2837" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706940.1" /db_xref="GeneID:1026238" /translation="MQYKDENGVNEPSRRRLLKGIGALAGSCPVAHAQKTQSAPGTLS PDARNEKQPFYGEHQAGILTPQQAAMMLVAFDVLASDKADLERLFRLLTQRFAFLSQG GAAPETPNPRLPPLDSGILGGYIAPDNLTITLSVGHSLFDERFGLAPQMPKKLQKMTR FPNDSLDAALCHGDVLLQICANTQDTVNHALRDIIKHTPDLLSVRWKREGFISDHAAR SKGKETPINLLGFKDGTANPDSQNDKLMQKVVWVTADQQEPAWTIGGSYQAVRLIQFR VEFWDRTPLKEQQTIFGRDKQTGAPLGMQHEHDVPDYASDPEGKVIALDSHIRLANPR TAESESSLMLRRGYSYSLGVTNSGQLDMGLLFVCYQHDLEKGFLTVQKRLNGEALEEY VKPIGGGYFFSLPGVKDANDYLGRALLQV" misc_feature 1066754..1067998 /gene="ycdB" /locus_tag="SF1021" /note="Tat-translocated enzyme; Region: tat_substr_1; TIGR01412" /db_xref="CDD:273606" gene 1068479..1069402 /locus_tag="SF1022" /db_xref="GeneID:1023996" CDS 1068479..1069402 /locus_tag="SF1022" /note="Code: T; COG: COG1702" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706941.1" /db_xref="GeneID:1023996" /translation="MRSRFSAFYPKANYGLQGSQPSDVRAHNRAANGACDEYKQLKVL SMGRQKAVIKARREAKRVLRRDSRSHKQREEESVTSLVQMSGVEAIGMARDSRDTSPI LARNEAQLHYLQAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ ADEDLGFLPGDIAEKFAPYFRPVYDLLVRRLGASFMQYCLRPEIGKVETAPFAYMRGR TFENAVVILDEAQNVTAAQMKMFLTRLGENVTVIVNGDITQCDLPRGVCSGLSDALER FEEDEMVGIVRFGKEDCVRSALCQRTLHAYS" misc_feature 1068614..1069399 /locus_tag="SF1022" /note="phosphate starvation-inducible protein PhoH; Region: PRK10536" /db_xref="CDD:182529" mobile_element complement(1069482..1070739) /mobile_element_type="insertion sequence:IS3" gene complement(1069512..1070378) /locus_tag="SF1023" /db_xref="GeneID:1024003" CDS complement(1069512..1070378) /locus_tag="SF1023" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence IS3A transposase InsF" /protein_id="NP_706942.1" /db_xref="GeneID:1024003" /translation="MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQ FRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKF SPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVI GWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSM SAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGG LSPEQFENQNLA" misc_feature complement(1069530..>1070378) /locus_tag="SF1023" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1070375..1070683) /locus_tag="SF1024" /db_xref="GeneID:1023962" CDS complement(1070375..1070683) /locus_tag="SF1024" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence IS3 transposase InsE" /protein_id="NP_706943.1" /db_xref="GeneID:1023962" /translation="MTYMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSL YESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK " misc_feature complement(1070393..1070650) /locus_tag="SF1024" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1070945..1071269 /locus_tag="SF1025" /pseudo /db_xref="GeneID:1023957" misc_feature 1070945..1071269 /locus_tag="SF1025" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787266 (108 aa). BLAST with identity of 99% in 108 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene 1071266..1072252 /gene="ycdU" /locus_tag="SF1026" /db_xref="GeneID:1024001" CDS 1071266..1072252 /gene="ycdU" /locus_tag="SF1026" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706944.1" /db_xref="GeneID:1024001" /translation="MIPDYLTFIRFQDKRNLIYIYAIGLILIGFYWKNAGFTFPSEDI GVVSGILALVLYNFIFDLKAYWAYKCVTKNIDFSWFKKKQNHKIELFLTQPLVAGFLS LIMLSAMSWGLYQLLPSLYALFLISLLGPLVIFLLFRMIRTSYVKQVAISVAKKVKYK SLTRYVLLSVCISTVVNLLTISPLRNSDSFVTEGQWLTFKSIIALLILCGVVLAINLF FLRFSKRPAFLGRFFLQEIDLFFSSENTLSTFFAKPLWLRLFILRVIEMMWITLVSVL ATLVEWRIWFEAYFLLCYVPCLIYYFFHCRFLWHNDFMMACDMYFRWGHFNK" gene complement(1072445..1072532) /locus_tag="SF4465" /db_xref="GeneID:3161768" tRNA complement(1072445..1072532) /locus_tag="SF4465" /product="tRNA-Ser" /codon_recognized="UCC" /db_xref="GeneID:3161768" gene 1072728..1073705 /gene="ycdW" /locus_tag="SF1027" /pseudo /db_xref="GeneID:1023964" misc_feature 1072728..1073705 /gene="ycdW" /locus_tag="SF1027" /note="Similar to Escherichia coli K12 dehydrogenase gi: 1787270 (326 aa). BLAST with identity of 99% in 326 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1073760..1074497 /gene="ycdX" /locus_tag="SF1028" /db_xref="GeneID:1024000" CDS 1073760..1074497 /gene="ycdX" /locus_tag="SF1028" /note="Code: ER; COG: COG1387" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="NP_706945.1" /db_xref="GeneID:1024000" /translation="MYPVDLHMHTVASTHAYSTLSDYIAQAKQKGIKLFAITDHGPDM EDAPHHWHFINMRIWPRVVDGVGILRGIEANIKNVDGEIDCSGKMFDSLDLIIAGFHE PVFAPHDKATNTQAMISTIASGNVHIISHPGNPKYEIDVKAVAEAAAKHQVALEINNS SFLHSRKGSEDNCRAVAAAVRDAGGWVALGSDSHTAFTMGEFEECLKILDAVDFPLER ILNVSPRRLLNFLESRGMAPIAEFADL" misc_feature 1073760..1074494 /gene="ycdX" /locus_tag="SF1028" /note="putative hydrolase; Validated; Region: PRK09248" /db_xref="CDD:236429" gene 1074521..1075075 /gene="ycdY" /locus_tag="SF1029" /db_xref="GeneID:1023985" CDS 1074521..1075075 /gene="ycdY" /locus_tag="SF1029" /note="Code: R; COG: COG3381" /codon_start=1 /transl_table=11 /product="oxidoreductase subunit" /protein_id="NP_706946.1" /db_xref="GeneID:1023985" /translation="MNEFSILCRVLGSLYYRQPQDPLLVPLFTLIREGKLAANWPLEQ DELLTRLQKSCDMTQVSADYNALFIGDECAVPPYRSAWVEDATEAEVRAFLSERGMLL ADTPADHIGTLLLAASWLEDQSTEDESEALETLFSEYLLPWCGAFLGKVEAHATTPFW RTMAPLTRDAISAMWDELEEDSEE" misc_feature 1074521..1075072 /gene="ycdY" /locus_tag="SF1029" /note="Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation [Posttranslational modification, protein turnover, chaperones]; Region: TorD; COG3381" /db_xref="CDD:442608" gene 1075147..1075668 /gene="ycdZ" /locus_tag="SF1030" /db_xref="GeneID:1024002" CDS 1075147..1075668 /gene="ycdZ" /locus_tag="SF1030" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706947.2" /db_xref="GeneID:1024002" /translation="MAAFSAIMRGMNILLSIAITTGILSGIWGWVAVSLGLLSWAGFL GCTAYFACPQGGLKGLAISAATLLSGVVWAMVIIYGSALAPHLEILGYVITGIVAFLM CIQAKQLLLSFVPGTFIGACATFAGQGDWKLVLPSLALGLVFGYAMKNSGLWLAARSA KTAHREQEIKNKA" misc_feature 1075204..1075602 /gene="ycdZ" /locus_tag="SF1030" /note="Protein of unknown function (DUF1097); Region: DUF1097; pfam06496" /db_xref="CDD:428977" gene complement(1075732..1076507) /gene="csgG" /locus_tag="SF1031" /pseudo /db_xref="GeneID:1023995" misc_feature complement(1075732..1076507) /gene="csgG" /locus_tag="SF1031" /note="'Similar to Escherichia coli K12 curli production assembly/transport component, 2nd curli operon gi: 1787274 (278 aa). BLAST with identity of 97% in 257 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo mobile_element complement(1076759..1078087) /mobile_element_type="insertion sequence:iso-IS10R" gene complement(1076772..1077980) /locus_tag="SF1032" /db_xref="GeneID:1023997" CDS complement(1076772..1077980) /locus_tag="SF1032" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_706948.1" /db_xref="GeneID:1023997" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature complement(1076811..1077866) /locus_tag="SF1032" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene complement(1078313..1078702) /gene="csgE" /locus_tag="SF1033" /db_xref="GeneID:1027566" CDS complement(1078313..1078702) /gene="csgE" /locus_tag="SF1033" /codon_start=1 /transl_table=11 /product="curli assembly protein CsgE" /protein_id="NP_706949.1" /db_xref="GeneID:1027566" /translation="MKRYLRWIVAAEFLFAAGNLHAVEVEVPGLLTDHTVSSIGHDFY RAFSDKWESDYTGNLTINERPSARWGSWITITVNQDVIFQTFLFPLKRDSEKTVVFAL IQTEEALNRRQINQALLSTDDLAHDEF" misc_feature complement(1078316..1078702) /gene="csgE" /locus_tag="SF1033" /note="curli production assembly/transport protein CsgE; Region: PRK10386" /db_xref="CDD:236678" gene complement(1078707..1079357) /gene="csgD" /locus_tag="SF1034" /db_xref="GeneID:1023998" CDS complement(1078707..1079357) /gene="csgD" /locus_tag="SF1034" /note="Code: K; COG: COG2771" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator CsgD" /protein_id="NP_706950.2" /db_xref="GeneID:1023998" /translation="MFNEVHSIHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQ RSLDDISSGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNTPEDYPYRDIENWP HINGVFYAMEDQERVVNGLQGVLRGECYFTQKLASYLITHSGNYRYNSTESALLTHRE KEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR" misc_feature complement(1078710..1079357) /gene="csgD" /locus_tag="SF1034" /note="transcriptional regulator CsgD; Region: PRK10100" /db_xref="CDD:182241" gene 1080111..1080566 /gene="csgB" /locus_tag="SF1035" /db_xref="GeneID:1023983" CDS 1080111..1080566 /gene="csgB" /locus_tag="SF1035" /codon_start=1 /transl_table=11 /product="curlin minor subunit CsgB" /protein_id="NP_706951.2" /db_xref="GeneID:1023983" /translation="MKNKLLFMMLTILGAPGIAAAAGYDLANSEYNFAVNELSKSSFN QAAIIGQAGTNNSAQLRQGGSKLLAVVAQEGSSNRAKIDQTGDYNLAYIDQAGSANDA SISQGAYGNTAMIIQKGSGNKANITQYGTQKTAVVVQRQSQMAIRVTQR" misc_feature 1080111..1080563 /gene="csgB" /locus_tag="SF1035" /note="curlin minor subunit CsgB; Provisional; Region: csgB; PRK10101" /db_xref="CDD:182242" misc_feature 1080607..1082203 /note="'Similar to Escherichia coli K12 curlin major subunit, coiled surface structures; cryptic gi: 1787279 (152 aa). BLAST with identity of 98% in 532 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'" mobile_element 1080716..1081766 /note="partial" /mobile_element_type="insertion sequence:IS600" gene 1080780..1081082 /locus_tag="SF1037" /db_xref="GeneID:1023977" CDS 1080780..1081082 /locus_tag="SF1037" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706952.1" /db_xref="GeneID:1023977" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATVYFAQESLKNTR" misc_feature 1080780..1081052 /locus_tag="SF1037" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element 1081758..1081857 /note="partial" /mobile_element_type="insertion sequence:IS600" gene 1082266..1082598 /gene="csgC" /locus_tag="SF1039" /db_xref="GeneID:1023978" CDS 1082266..1082598 /gene="csgC" /locus_tag="SF1039" /codon_start=1 /transl_table=11 /product="curli assembly protein CsgC" /protein_id="NP_706954.2" /db_xref="GeneID:1023978" /translation="MNALLLLAALSSQITFNTTQQGDMYTIIPEVTLTQSCLCRVQIL SLREGSSGQSQTKQEKTLSLPANQPIALTKLSLNISPEDRVKIVVTVSDGQALHLSQQ WTPSSEKS" misc_feature 1082266..1082595 /gene="csgC" /locus_tag="SF1039" /note="curli assembly protein CsgC; Provisional; Region: csgC; PRK10102" /db_xref="CDD:182243" gene 1082719..1083030 /locus_tag="SF1040" /db_xref="GeneID:1023992" CDS 1082719..1083030 /locus_tag="SF1040" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706955.1" /db_xref="GeneID:1023992" /translation="MFRPFLDSLMLGSLFFPFIAIAGSTAQGGVIHFYGQIVEPACDV STQSSPVEMNCPQNGSIPGKTYSSKALMSGNVKNAQIASVKVQYLDKQKKLAVMNIEY N" misc_feature 1082743..>1082880 /locus_tag="SF1040" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" gene 1083125..1083658 /locus_tag="SF1041" /db_xref="GeneID:1023972" CDS 1083125..1083658 /locus_tag="SF1041" /note="Code: S; COG: COG2110" /codon_start=1 /transl_table=11 /product="RNase III inhibitor" /protein_id="NP_706956.1" /db_xref="GeneID:1023972" /translation="MKTRIHVVQGDITKLAVDVIVNAANPSLMGGGGVDGAIHRAAGP ALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYL NSLRLVAANSYTSVAFPAISTGVYSYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYD EENAHLYERLLTQQGDE" misc_feature 1083125..1083655 /locus_tag="SF1041" /note="ADP-ribose-binding protein; Region: PRK00431" /db_xref="CDD:234759" misc_feature order(1083152..1083160,1083191..1083199,1083212..1083229, 1083233..1083235,1083242..1083244,1083371..1083373, 1083377..1083379,1083479..1083502,1083593..1083595, 1083599..1083604,1083611..1083613) /locus_tag="SF1041" /note="active site" /db_xref="CDD:438955" gene 1083600..1085081 /gene="ymdC" /locus_tag="SF1042" /db_xref="GeneID:1024018" CDS 1083600..1085081 /gene="ymdC" /locus_tag="SF1042" /note="Code: I; COG: COG1502" /codon_start=1 /transl_table=11 /product="synthase" /protein_id="NP_706957.2" /db_xref="GeneID:1024018" /translation="MMKKTPTSTKDSLPNKEMNDLPRLASAVLPLCSQHPGQCGLFPL EKSLDAFAARYRLAEMAEHTLDVQYYIWQDDMSGRLLFSALLAAAKRGVRVRLLLDDN NTPGLDDILRLLDSHPRIEVRLFNPFSFRLLRPLGYITDFSRLNRRMHNKSFTVDGVV TLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVEDVADDFARYWYCKSVSPLQQVLDV PEGEMADRIELPASWHNDAMTHRYLRKMESSPFINHLVDGTLPLIWAKTRLLSDDPAK GEGKAKRHSLLPQRLFDIMGSPSERIDIISSYFVPTRAGVAQLLRMVRKGVKIAILTN SLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREQSSTLHDRGITGNSGASLHAKT FSIDGKTVFIGSFNFDPRSTLLNTEMGFVIESETLAQLIDKRFIQSQYDAAWQLRLDR WGRINWVDRHAKKEVILKKEPATSFWKRVMVRLASILPVEWLL" misc_feature 1083729..1084211 /gene="ymdC" /locus_tag="SF1042" /note="Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_1; cd09111" /db_xref="CDD:197210" misc_feature order(1084047..1084049,1084053..1084055,1084092..1084094, 1084098..1084100,1084146..1084148) /gene="ymdC" /locus_tag="SF1042" /note="putative active site [active]" /db_xref="CDD:197210" misc_feature 1084047..1084049 /gene="ymdC" /locus_tag="SF1042" /note="catalytic site [active]" /db_xref="CDD:197210" misc_feature 1084407..1085066 /gene="ymdC" /locus_tag="SF1042" /note="Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_2; cd09113" /db_xref="CDD:197212" misc_feature order(1084764..1084766,1084770..1084772,1084809..1084811, 1084815..1084817,1084848..1084850) /gene="ymdC" /locus_tag="SF1042" /note="putative active site [active]" /db_xref="CDD:197212" misc_feature 1084764..1084766 /gene="ymdC" /locus_tag="SF1042" /note="catalytic site [active]" /db_xref="CDD:197212" gene complement(1085089..1086246) /gene="mdoC" /locus_tag="SF1043" /db_xref="GeneID:1023988" CDS complement(1085089..1086246) /gene="mdoC" /locus_tag="SF1043" /codon_start=1 /transl_table=11 /product="glucans biosynthesis protein" /protein_id="NP_706958.2" /db_xref="GeneID:1023988" /translation="MNPVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEP SLWLTLFNDFIHSFRMQVFFVISGYFSYMLFLRYPLKKWWKVRVERVGIPMLTAIPLL TLPQFIMLQYVKGKAESWPGLSLYDKYNTLAWELISHLWFLLVLVVMTTLCVWIFKRI RNNLENSDKTNKKFSMVKLSVIFLCLGIGYAVIRRTIFIVYPPILSNGMFNFIVMQTL FYLPFFILGALAFIFPHLKALFTTPSRGCTLAAALAFVAYLLNQRYGSGDAWMYETES VITMVLGLWMVNVVFSFGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI TSNWLGFLCGLIFVVGIAIILYEIHLRIPLLKFLFSGKPVVKRENDKAPAR" misc_feature complement(1085128..1086246) /gene="mdoC" /locus_tag="SF1043" /note="glucans biosynthesis protein MdoC; Region: opgC; PRK03854" /db_xref="CDD:235167" gene 1086640..1088175 /gene="mdoG" /locus_tag="SF1044" /db_xref="GeneID:1023993" CDS 1086640..1088175 /gene="mdoG" /locus_tag="SF1044" /note="Code: P; COG: COG3131" /codon_start=1 /transl_table=11 /product="glucan biosynthesis protein G" /protein_id="NP_706959.2" /db_xref="GeneID:1023993" /translation="MMKMRWLSAAVMLTLYTSSSWAFSIDDVAKQAQSLAGKGYEAPK SNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATA VKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI GAGQVYGLSARGLAIDTALPSGEEFPRFKEFWIERPKPTDKRLTIYALLDSPRATGAY KFVVMPGRDTVVDVQSKIYLRDKVGKLGVAPLTSMFLFGPNQPSPANNYRPELHDSNG LSIHAGNGEWIWRPLNNPKHLAVSSFSMENPRGFGLLQRGRDFSRFEDLDDRYDLRPS AWVTPKGEWGKGSVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTITFSRDED KLHAPDNAWVQQTRRSTGDVKQSNLIRQPDGTIAFVVDFTGAEMKKLPEDTPVTAQTS IGDNGEIVESTVRYNPVTKGWRLVMRVKVKDAKKITEMRAALVNADQTLSETWSYQLP ANE" misc_feature 1086640..1088169 /gene="mdoG" /locus_tag="SF1044" /note="glucan biosynthesis protein G; Provisional; Region: mdoG; PRK13274" /db_xref="CDD:237328" gene 1088168..1090711 /gene="mdoH" /locus_tag="SF1045" /db_xref="GeneID:1023984" CDS 1088168..1090711 /gene="mdoH" /locus_tag="SF1045" /note="Code: M; COG: COG2943" /codon_start=1 /transl_table=11 /product="glucosyltransferase MdoH" /protein_id="NP_706960.2" /db_xref="GeneID:1023984" /translation="MNKTTEYIDAMPIAASEKAALPKTDIRAVHQALDAEHRTWARED DSPQGSVKARLEQAWPDSLADGQLIKDDEGRDQLKAMPEAKRSSMFPDPWRTNPVGRF WDRLRGRDVTPRYLARLTKEEQESEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL PYQGWALINPMDMVGQDLWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ LLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVNRVFAGLRATWESVKATGNAK HFDVYILSDSYNPDICVAEQKAWMELIAEVGGEGQIFYRRRRRRVKRKSGNIDDFCRR WGSQYSYMVVLDADSVMTGDCLCGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL AIALFASTMVLLFLPKLLSILLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF HTVFVVSAFLGWEVVWNSPQRDDDSTSWGEAFKRHGSQLLLGLVWAVGMAWLDLRFLF WLAPIVFSLILSPFVSVISSRATVGLRTKRWKLFLIPEEYSPPQVLVDTDRFLEMNRQ RSLDDGFMHAVFNPSFNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR LVLLSDPVTMARLHFRVWNSPERYSSWVSYYEGIKLNPLALRKPDAASQ" misc_feature 1088549..1090615 /gene="mdoH" /locus_tag="SF1045" /note="Membrane glycosyltransferase [Cell wall/membrane/envelope biogenesis, Carbohydrate transport and metabolism]; Region: MdoH; COG2943" /db_xref="CDD:442186" mobile_element complement(1090939..1092767) /mobile_element_type="insertion sequence:IS91" gene complement(1091127..1092314) /locus_tag="SF1046" /db_xref="GeneID:1026252" CDS complement(1091127..1092314) /locus_tag="SF1046" /codon_start=1 /transl_table=11 /product="insertion sequence IS91 transposase" /protein_id="NP_706961.1" /db_xref="GeneID:1026252" /translation="MLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTT LMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPYCPWQHIVF TLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQADVEPGIFTVIHTWGRDQQWHPHI HLSTTAGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPYLVMPDALAAEGSSKR EWNRFLDTHYRRGWNVNVSRVMDNATHVAVYFGSYLKKPPVPMSRLEHYAGQDEIGLR YNSHRTKREEYLLMSGDESMERFSWHVADKGFRMVRYYVFLSPAKRRLLEEVVYIITE TVRKTAMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMR WCG" misc_feature complement(1091187..1092302) /locus_tag="SF1046" /note="IS91 family transposase; Region: transpos_IS91; NF033538" /db_xref="CDD:468069" gene complement(1092314..1092736) /locus_tag="SF1048" /db_xref="GeneID:1024027" CDS complement(1092314..1092736) /locus_tag="SF1048" /codon_start=1 /transl_table=11 /product="insertion sequence IS91 protein" /protein_id="NP_706962.1" /db_xref="GeneID:1024027" /translation="MVCNYRYKNRQCHCLSGGYMARSAKPRKRKPASQRSKLPRYVVK LHEDDFFDEEDAEVLRFDSFDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEI ARCTEREFATILAGISAGGMYCPECGTVHWPDGVAPPF" gene 1092698..1094307 /locus_tag="SF1047" /pseudogene="unknown" /db_xref="GeneID:1024033" mobile_element complement(1094369..1095674) /mobile_element_type="insertion sequence:IS629" gene complement(1094411..1095294) /locus_tag="SF1049" /pseudogene="unknown" /db_xref="GeneID:1024034" gene complement(1095294..1095620) /locus_tag="SF1050" /db_xref="GeneID:1023387" CDS complement(1095294..1095620) /locus_tag="SF1050" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_706965.1" /db_xref="GeneID:1023387" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWGRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature complement(1095330..1095617) /locus_tag="SF1050" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element 1095980..1097228 /mobile_element_type="insertion sequence:IS911" gene 1096016..1096354 /locus_tag="SF1051" /db_xref="GeneID:1024023" CDS 1096016..1096354 /locus_tag="SF1051" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_706966.1" /db_xref="GeneID:1024023" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature 1096055..1096324 /locus_tag="SF1051" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1096381..1097220 /locus_tag="SF1052" /db_xref="GeneID:1023991" CDS 1096381..1097220 /locus_tag="SF1052" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_706967.1" /db_xref="GeneID:1023991" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSEQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature 1096402..1097211 /locus_tag="SF1052" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(1097226..1097729) /locus_tag="SF1053" /db_xref="GeneID:1023987" CDS complement(1097226..1097729) /locus_tag="SF1053" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706968.1" /db_xref="GeneID:1023987" /translation="MSGDSGGQSSESGSTLISRDNKLVENFIDTLENWRDQKQIISVI CKDGIKIDDSIITSFKASKDVGISNGLRIQLTFQEINFKAIVGQTDVSAATGRTSTTN DGGATSKKNTGNTTTSLGSPMLTCKELFSYSASELSDEALKARVTCSKSVSVKNGEST FTASANE" mobile_element 1097702..1099032 /mobile_element_type="insertion sequence:IS2" gene 1097748..1098158 /locus_tag="SF1054" /db_xref="GeneID:1024026" CDS 1097748..1098158 /locus_tag="SF1054" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_706969.3" /db_xref="GeneID:1024026" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 1097793..1098155 /locus_tag="SF1054" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 1098116..1099021 /locus_tag="SF1055" /db_xref="GeneID:1024016" CDS 1098116..1099021 /locus_tag="SF1055" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_706970.1" /db_xref="GeneID:1024016" /translation="MDSARALIARGWGVSLVSRCLRVSRAHVHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature 1098116..1099018 /locus_tag="SF1055" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" mobile_element 1099363..1100668 /mobile_element_type="insertion sequence:IS629" gene 1099417..1099743 /locus_tag="SF1056" /db_xref="GeneID:1026720" CDS 1099417..1099743 /locus_tag="SF1056" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_706971.1" /db_xref="GeneID:1026720" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature 1099420..1099707 /locus_tag="SF1056" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1099743..1100626 /locus_tag="SF1057" /pseudogene="unknown" /db_xref="GeneID:1024029" mobile_element 1100850..1102113 /mobile_element_type="insertion sequence:IS600" gene 1100914..1101216 /locus_tag="SF1058" /db_xref="GeneID:1023980" CDS 1100914..1101216 /locus_tag="SF1058" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_706973.1" /db_xref="GeneID:1023980" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 1100914..1101186 /locus_tag="SF1058" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1101252..1102070 /locus_tag="SF1059" /db_xref="GeneID:1024008" CDS 1101252..1102070 /locus_tag="SF1059" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_706974.1" /db_xref="GeneID:1024008" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA" misc_feature <1101252..1102043 /locus_tag="SF1059" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1102095..1103027) /locus_tag="SF1060" /db_xref="GeneID:1024020" CDS complement(1102095..1103027) /locus_tag="SF1060" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_706975.2" /db_xref="GeneID:1024020" /translation="MRRAISYIRFSSERQLKGDSVRRQSKLVTDWLDKNPEFYLDSSL SFKDLGKSAFSGKHLKGGLGDFLTAIEKGLVKAGDTLLIESLDRLSRQDIDIASELLR RILRAGVDVVTLSDGEHYTRESLKDPLALIKSILIMQRAHEESLRKSERVQAAWNRKK ELISEGIKVSRRCPAWLRLNDDRRTFTIIPDKVEVVKRAFDLRLQGLSFWAITRTLND EGHLSLNQYTPKQKGWSDTAVKKLLRNRAVIGCFTPAGREEVQGYYPAIISESLFYRV QQLNTGQYGRASVSSNPLSVNLFRGIIKCEVYWQ" misc_feature complement(<1102278..1103027) /locus_tag="SF1060" /note="Site-specific DNA recombinase SpoIVCA/DNA invertase PinE [Replication, recombination and repair]; Region: SpoIVCA; COG1961" /db_xref="CDD:441564" gene complement(1103420..1104340) /gene="htrB" /locus_tag="SF1061" /db_xref="GeneID:1024013" CDS complement(1103420..1104340) /gene="htrB" /locus_tag="SF1061" /note="Code: N; COG: COG1560" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis lauroyl acyltransferase" /protein_id="NP_706976.2" /db_xref="GeneID:1024013" /translation="MTNLPKFSTALLHPRYWLTWLGIGVLWLVVQLPYPIIYRLGCGL GKLALRFMKRRAKIVHRNLELCFPEMSEQERRKMVVKNFESVGMGLMETGMAWFWPDR RIARWTEVIGMEHIRDVQAQKRGILLVGIHFLTLELGARQFGMQEPGIGVYRPNDNPL IDWLQTWGRLRSNKSMLDRKDLKGMIKALKKGEVVWYAPDHDYGPRSSVFVPLFAVEQ AATTTGTWMLARMSGACLVPFVPRRKPDGKGYQLIMLPPECSPPLDDAETTAAWMNKV VEKCIMMAPEQYMWLHRRFKTRPEGVPSRY" misc_feature complement(1103423..1104340) /gene="htrB" /locus_tag="SF1061" /note="lipid A biosynthesis lauroyl acyltransferase; Provisional; Region: PRK06860" /db_xref="CDD:235880" misc_feature complement(order(1103732..1103740,1103873..1103884, 1103930..1103932,1103936..1103938,1103945..1103947)) /gene="htrB" /locus_tag="SF1061" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153246" gene 1104565..1105617 /gene="yceA" /locus_tag="SF1062" /db_xref="GeneID:1026260" CDS 1104565..1105617 /gene="yceA" /locus_tag="SF1062" /note="Code: R; COG: COG1054" /codon_start=1 /transl_table=11 /product="rhodanese-related sulfurtransferase" /protein_id="NP_706977.2" /db_xref="GeneID:1026260" /translation="MPVLHNRISNDALKAKMLAESEPRTTISFYKYFHIADPKATRDA LYQLFTALNVFGRVYLAHEGINAQISVPASNVETFRAQLYAFDPALEGLRLNIALDDD GKSFWVLRMKVRDRIVADGIDDPHFDASNVGEYLQAAEVNAMLDDPDALFIDMRNHYE YEVGHFENALEIPADTFREQLPKAVEMMQAHKDKKIVMYCTGGIRCEKASAWMKHNGF NKVWHIEGGIIEYARKAREQGLPVRFIGKNFVFDERMGERISDEIIAHCHQCGAPCDS HTNCKNDGCHLLFIQCPVCAEKYKGCCSEICCEESALPPEEQRRRRAGRENGNKIFNK SRGRLNTTLGIPDPTE" misc_feature 1104625..1105575 /gene="yceA" /locus_tag="SF1062" /note="rhodanese-related sulfurtransferase; Region: PRK00142" /db_xref="CDD:234663" misc_feature 1105162..1105164 /gene="yceA" /locus_tag="SF1062" /note="active site residue [active]" /db_xref="CDD:238776" gene complement(1105659..1106234) /gene="yceI" /locus_tag="SF1063" /db_xref="GeneID:1024015" CDS complement(1105659..1106234) /gene="yceI" /locus_tag="SF1063" /note="Code: S; COG: COG2353" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706978.1" /db_xref="GeneID:1024015" /translation="MKKSLLGLTFASLMFSAGSAVAADYKIDKEGQHAFVNFRIQHLG YSWLYGTFKDFDGTFTFDEKNPAADKVNVTINTTSVDTNHAERDKHLRSADFLNTTKY PQATFTSTSVKKDGDELDITGDLTLNGVTKPVTLEAKLIGQGDDPWGGKRAGFEAEGK IKLKDFNIKTDLGPASQEVDLIISVEGVQQK" misc_feature complement(1105665..1106234) /gene="yceI" /locus_tag="SF1063" /note="YceI family protein; Region: PRK03757" /db_xref="CDD:179642" gene complement(1106238..1106804) /locus_tag="SF1064" /db_xref="GeneID:1024007" CDS complement(1106238..1106804) /locus_tag="SF1064" /note="Code: C; COG: COG3038" /codon_start=1 /transl_table=11 /product="cytochrome" /protein_id="NP_706979.2" /db_xref="GeneID:1024007" /translation="MSFTNTPERYGVISAAFHWLSAIIVYGMFALGLWMVTLSYYDGW YHKAPELHKSIGILLMMGLVIRVLWRVISPPPGPLPSYSPMTRLAAKAGHLALCLLLF AIGISGYLISTADGKPISVFGWFDVPATLADAGAQADFAGALHFWLAWSVVVLSVMHG FMALKHHFIDKDDTLKRMLGKSSSDYGV" misc_feature complement(1106265..1106804) /locus_tag="SF1064" /note="Cytochrome b561 [Energy production and conversion]; Region: CybB; COG3038" /db_xref="CDD:442272" gene complement(1107065..1107178) /gene="yceO" /locus_tag="SF1065" /db_xref="GeneID:1024048" CDS complement(1107065..1107178) /gene="yceO" /locus_tag="SF1065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706980.2" /db_xref="GeneID:1024048" /translation="MRRLLHYLINNIREHLMLYLFLWGLLAIMDLIYVFYF" misc_feature complement(1107071..1107178) /gene="yceO" /locus_tag="SF1065" /note="Protein of unknown function (DUF2770); Region: DUF2770; pfam10968" /db_xref="CDD:431565" gene complement(1107226..1108344) /gene="solA" /locus_tag="SF1066" /db_xref="GeneID:1024010" CDS complement(1107226..1108344) /gene="solA" /locus_tag="SF1066" /note="Code: E; COG: COG0665" /codon_start=1 /transl_table=11 /product="N-methyltryptophan oxidase" /protein_id="NP_706981.1" /db_xref="GeneID:1024010" /translation="MKYDLIIIGSGSVGAAAGYYATRAGLNVLMTDAHMPPHQHGSHH GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSRHNEDDPIFVRSGVINLGPADSAFLAN VAHSAEQWQLNVEKLDAQGIMARWPEIRVPDNYIGLFETDSGFLRSELAIKTWIQLAK EAGCAQLFNCPVTAIRHDDDGVTIETVDGEYQAKKAIVCAGTWVKDLLPELPVQPVRK VFAWYQADGRYSVKNKFPAFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERV PFAEVASDGSEAFPFLRNVLPGIGCCLYGAACTYDNSPDEDFIIDTLPGHDNTLLITG LSGHGFKFASVLGEIAADFAQDQKSDFDLTPFRLSRFQ" misc_feature complement(1107229..1108344) /gene="solA" /locus_tag="SF1066" /note="N-methyl-L-tryptophan oxidase; Region: solA; PRK11259" /db_xref="CDD:236887" gene complement(1109003..1109248) /gene="dinI" /locus_tag="SF1067" /db_xref="GeneID:1024017" CDS complement(1109003..1109248) /gene="dinI" /locus_tag="SF1067" /codon_start=1 /transl_table=11 /product="DNA damage-inducible protein I" /protein_id="NP_706982.2" /db_xref="GeneID:1024017" /translation="MRIEVTIAKTSPLPAGAIDALAGELSRRIQYAFPDNEGHVSVRY AAANNLSVIGATKEDKQRISEILQETWESADDWFVSE" misc_feature complement(1109006..1109248) /gene="dinI" /locus_tag="SF1067" /note="DNA damage-inducible protein I; Provisional; Region: PRK10597" /db_xref="CDD:182578" gene complement(1109322..1110368) /gene="pyrC" /locus_tag="SF1068" /db_xref="GeneID:1024025" CDS complement(1109322..1110368) /gene="pyrC" /locus_tag="SF1068" /note="Code: F; COG: COG0418" /codon_start=1 /transl_table=11 /product="dihydroorotase" /protein_id="NP_706983.1" /db_xref="GeneID:1024025" /translation="MTAPSQVLKIRRPDDWHLHLRDGDMLKTVVPYTSEIYGRAIVMP NLAPPVTTVEAAVAYRQRILDAVPAGHDFTPLMTCYLTDSLDPNELERGFNEAVFTAA KLYPANATTNSSHGVTSIDAIMPVLERMEKIGMPLLVHGEVTHADIDIFDREARFIES VMEPLRQRLTALKVVFEHITTKDAADYVRDGNERLAATITPQHLMFNRNHMLVGGVRP HLYCLPILKRNIHQQALRELVASGFNRVFLGTDSAPHARHRKESSCGCAGCFNAPTAL GSYATVFEEMNALQHFEAFCSVNGPQFYGLPVNDTFIELVREEQQVAESIALTDDTLV PFLAGETVRWSVKQ" misc_feature complement(1109328..1110353) /gene="pyrC" /locus_tag="SF1068" /note="Dihydroorotase [Nucleotide transport and metabolism]; Region: PyrC; COG0418" /db_xref="CDD:440187" gene complement(1110474..1111034) /gene="yceB" /locus_tag="SF1069" /db_xref="GeneID:1024009" CDS complement(1110474..1111034) /gene="yceB" /locus_tag="SF1069" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_706984.2" /db_xref="GeneID:1024009" /translation="MNKFLFAAALIVSGLLVGCNQLTQYTITEQEINQSLAKHNNFSK DIGLPGVADAHIVLTNLTSQIGREEPNKVTLTGDANLDMNSLFGSQKATMKLKLKALP VFDKEKGAIFLKEMEVVDATVQPEKMQTVMQTLLPYLNQALRNYFNQQPAYVLREDGS QGEAMAKKLAKGIEVKPGEIVIPFTD" misc_feature complement(1110477..1111034) /gene="yceB" /locus_tag="SF1069" /note="lipoprotein; Provisional; Region: PRK10598" /db_xref="CDD:182579" gene complement(1111168..1111815) /gene="grxB" /locus_tag="SF1070" /db_xref="GeneID:1024019" CDS complement(1111168..1111815) /gene="grxB" /locus_tag="SF1070" /note="Code: O; COG: COG2999" /codon_start=1 /transl_table=11 /product="glutaredoxin" /protein_id="NP_706985.1" /db_xref="GeneID:1024019" /translation="MKLYIYDHCPYCLKARMIFGLKNIPVELHVLLNDDAETPTRMVG QKQVPILQKDDSRYMPESMDIVHYVDKLDGKPLLTGKRSPAIEEWLRKVNGYVNKLLL PRFAKSAFDEFSTPAARKYFVDKKEASAGNFADLLAHSDGLIKNISDDLRALDKLIVK PNAVNGELSEDDIQLFPLLRNLTLVAGINWPSRVANYRDNMAKQTQINLLSSMAI" misc_feature complement(1111186..1111815) /gene="grxB" /locus_tag="SF1070" /note="glutaredoxin 2; Provisional; Region: PRK10387" /db_xref="CDD:236679" gene complement(1111879..1113087) /gene="yceL" /locus_tag="SF1071" /db_xref="GeneID:1024021" CDS complement(1111879..1113087) /gene="yceL" /locus_tag="SF1071" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="multidrug resistance protein MdtH" /protein_id="NP_706986.2" /db_xref="GeneID:1024021" /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL WFSCLLSGLGGTLFDPPRSALVVKLIRPQQRGRFFSLLMMQDSASAVIGALLGSWLLQ YDFRLVCATGAVLFVLCAAFNAWLLPAWKLSTVRTPVREGMTRVMRDKRFVTYVLTLA GYYMLAVQVMLMLPIMVNDVAGAPSAVKWMYAIEACLSLTLLYPIARWSEKHFRLEHR LMAGLLIMSLSMMPVGMVSGLQQLFTLICLFYIGSIIAEPARETLSASLADARARGSY MGFSRLGLAIGGAIGYIGGGWLFDLGKSAHQPELPWMMLGIIGIFTFLALGWQFSQKR AARRLLERDA" misc_feature complement(1111888..1113087) /gene="yceL" /locus_tag="SF1071" /note="multidrug efflux MFS transporter MdtH; Region: PRK11646" /db_xref="CDD:183255" gene 1113323..1113907 /gene="rimJ" /locus_tag="SF1072" /db_xref="GeneID:1024014" CDS 1113323..1113907 /gene="rimJ" /locus_tag="SF1072" /note="Code: J; COG: COG1670" /codon_start=1 /transl_table=11 /product="ribosomal-protein-S5-alanine N-acetyltransferase" /protein_id="NP_706987.1" /db_xref="GeneID:1024014" /translation="MFGYRSNVPKVRLTTDRLVVRLVHDRDAWRLADYYAENRHFLKP WEPVRDESHCYPSGWQARLGMINEFHKQGSAFYFGLFDPDEKEIIGVANFSNVVRGSF HACYLGYSIGQKWQGKGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGDLLARLG FEKEGYAKDYLLIDGQWRDHVLTALTTPDWTPGR" misc_feature 1113323..1113904 /gene="rimJ" /locus_tag="SF1072" /note="30S ribosomal protein S5 alanine N-acetyltransferase; Region: PRK10809" /db_xref="CDD:182749" gene 1113918..1114565 /gene="yceH" /locus_tag="SF1073" /db_xref="GeneID:1024004" CDS 1113918..1114565 /gene="yceH" /locus_tag="SF1073" /note="Code: S; COG: COG3132" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_706988.1" /db_xref="GeneID:1024004" /translation="MKYQLTALEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR EPVMNLSESEVQEQLDNLVKRHYLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL ITTLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANREDGPFVVRLAREPGKRE SRYMHLFSGEVEDQPAVTAMSNMVDGDLQTRVEALEIEVAELKQRLDSLLAHLGD" misc_feature 1113918..1114562 /gene="yceH" /locus_tag="SF1073" /note="hypothetical protein; Provisional; Region: PRK11239" /db_xref="CDD:183048" gene 1114567..1115400 /locus_tag="SF1074" /pseudogene="unknown" /db_xref="GeneID:1024044" gene 1115600..1117135 /gene="mviN" /locus_tag="SF1075" /db_xref="GeneID:1024011" CDS 1115600..1117135 /gene="mviN" /locus_tag="SF1075" /note="Code: R; COG: COG0728" /codon_start=1 /transl_table=11 /product="virulence factor" /protein_id="NP_706990.2" /db_xref="GeneID:1024011" /translation="MNLLKSLAAVSSMTMFSRVLGFARDAIVARIFGAGMATDAFFVA FKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEDATRVFVSYVSGLLTLALAVVTVAG MLAAPWVIMVTAPGFADTADKFALTSQLLKITFPYILLISLASLVGAILNTWNRFSIP AFAPTLLNISMIGFALFAAPYFNPPVLALAWAVTVGGILQLVYQLPHLKKIGMLVLPR INFHDAGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVSWMYYADRLMEFPS GVLGVALGTILLPSLSKSFASGNHDEYNRLMDWGLRLCFLLALPSAVALGILSGPLTV SLFQYGKFTAFDALMTQRALIAYSVGLIGLIVVKVLAPGFYSRQDIKTPVKIAIVTLI LTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQKIFTPQPGWMAFLLRLVV AVLVMSGVLLGMLHIMPEWSLGTMPWRLLRLMAVVLAGIAAYFAALAVLGFKVKEFAR RTV" misc_feature 1115609..1117123 /gene="mviN" /locus_tag="SF1075" /note="Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope biogenesis]; Region: MurJ; COG0728" /db_xref="CDD:440492" gene complement(1117175..1117591) /gene="flgN" /locus_tag="SF1076" /db_xref="GeneID:1024067" CDS complement(1117175..1117591) /gene="flgN" /locus_tag="SF1076" /note="Code: N; COG: COG3418" /codon_start=1 /transl_table=11 /product="flagella synthesis chaperone protein FlgN" /protein_id="NP_706991.1" /db_xref="GeneID:1024067" /translation="MTRLAEILDQMSAVLNDLKTVMDQEQQHLSMGQINGSQLQWITE QKSSLLATLDYLEQLRKKEPNTANSVDISQRWQEITVKTQQLRQMNQHNGWLLEGQIE RNQQALEMLKPHQEPTLYGANGQTSTPHRGSKKISI" misc_feature complement(1117178..1117591) /gene="flgN" /locus_tag="SF1076" /note="flagella biosynthesis chaperone FlgN; Region: PRK15459" /db_xref="CDD:185356" gene complement(1117596..1117889) /gene="flgM" /locus_tag="SF1077" /db_xref="GeneID:1024006" CDS complement(1117596..1117889) /gene="flgM" /locus_tag="SF1077" /note="Code: KN; COG: COG2747" /codon_start=1 /transl_table=11 /product="anti-sigma28 factor FlgM" /protein_id="NP_706992.1" /db_xref="GeneID:1024006" /translation="MSIDRTSPLKPVSTVQPRETTDAPVTNSRAAKTTASTSTSVTLS DAQAKLMQPGSSDINLERVEALKLAIRNGELKMDTGKIADALINEAQQDLQSN" misc_feature complement(1117599..1117889) /gene="flgM" /locus_tag="SF1077" /note="anti-sigma-28 factor FlgM; Region: PRK10810" /db_xref="CDD:236765" gene complement(1117965..1118624) /gene="flgA" /locus_tag="SF1078" /db_xref="GeneID:1023994" CDS complement(1117965..1118624) /gene="flgA" /locus_tag="SF1078" /note="Code: N; COG: COG1261" /codon_start=1 /transl_table=11 /product="flagellar basal body P-ring biosynthesis protein FlgA" /protein_id="NP_706993.1" /db_xref="GeneID:1023994" /translation="MLTIKRSVAIIAILFSPLSTASNLTSQLHNFFSAQLAGVSDEVR VSIRTAPNLLPPCEQPLLSMSNNSRLWGNVNVLARCGNDKRYLQVNVQATGNYVVAAM PIVRGGKLEAGNVKLKRGRLDTLPPRTVLDINQLVDAVSLRDLSPDQPIQLTQFRQAW RVKAGQRVNVIASGDGFSANAEGQALNNAAVAQNARVRMVSEQVVSGVVDADGNILIN L" misc_feature complement(1117968..1118624) /gene="flgA" /locus_tag="SF1078" /note="flagellar basal body P-ring formation protein FlgA; Region: flgA; PRK07018" /db_xref="CDD:180794" gene 1118779..1119195 /gene="flgB" /locus_tag="SF1079" /db_xref="GeneID:1024053" CDS 1118779..1119195 /gene="flgB" /locus_tag="SF1079" /note="Code: N; COG: COG1815" /codon_start=1 /transl_table=11 /product="flagellar basal-body rod protein FlgB" /protein_id="NP_706994.1" /db_xref="GeneID:1024053" /translation="MLDKLDAALRFQQEALNLRAQRQEVLAANIANADTPGYQARDID FASELKKVMQRGRDATSVVALTMTSTQHIPAQALTPPTAELQYRIPDQPSLDGNTVDM DRERTQFADNSLQYQMSLSALSGQIKGMMNVLQSGN" misc_feature 1118791..1119183 /gene="flgB" /locus_tag="SF1079" /note="flagellar basal-body rod protein FlgB; Region: FlgB; TIGR01396" /db_xref="CDD:273598" gene 1119199..1119602 /locus_tag="SF1079a" /pseudogene="unknown" /db_xref="GeneID:16608314" gene 1119614..1121542 /gene="flgE" /locus_tag="SF1080" /db_xref="GeneID:1024030" CDS 1119614..1121542 /gene="flgE" /locus_tag="SF1080" /note="Code: N; COG: COG1749" /codon_start=1 /transl_table=11 /product="flagellar hook protein FlgE" /protein_id="NP_706995.3" /db_xref="GeneID:1024030" /translation="MSIAVTTTDPTNTGVSTTSSSSLTGSNAADLQSSFLTLLVAQLK NQDPTNPMENNELTSQLAQISTVSGIEKLNTTLGSISGQIDNSQSLQASNLIGHGVMI PGTTVLAGTGSEEGAVTTTTPFGVELQQAADKVTATITDKNGAVVRTIDIGELTAGVH SFTWDGSLTDGSTAPNGSYNVAISASNGGTQLVAQPLQFALVQGVIRGNSGNTLDLGT YGTTTLDEVRQIIKAFTFQESVMAFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGT ASFADMFAGSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFY SRNGQFKLDENRNLLNTQGLQLTGYPVTGTPPTIQQGANPTNISIPNTLMAAKTTTTA SMQINLNSSDPLPTVTPFSASNADSYNKKGSVTVFDSQGNAHDMSVYFVKTGDNNWQV YTQDSSDPNSIAKTATTLEFNANGTLVDGAMANNIATGAINGAEPATFSLSFLNSMQQ NTGANNIVATTQNGYKPGDLVSYQINDDGTVVGNNSNEQTQLLGQIVLANFANNEGLA SEGDNVWSATQSSGVALLGTAGTGNFGTLTNGALEASNVDLSKELVNMIVAQRNYKSN AQTIKTQDQILNTRVNLR" misc_feature 1119614..1120306 /gene="flgE" /locus_tag="SF1080" /note="flagellar hook assembly protein FlgD; Region: flgD; PRK06655" /db_xref="CDD:235847" misc_feature 1120334..1121539 /gene="flgE" /locus_tag="SF1080" /note="Flagellar hook protein FlgE [Cell motility]; Region: FlgE; COG1749" /db_xref="CDD:441355" gene 1121562..1122313 /gene="flgF" /locus_tag="SF1081" /pseudo /db_xref="GeneID:1024050" misc_feature 1121562..1122313 /gene="flgF" /locus_tag="SF1081" /note="'Similar to Escherichia coli K12 flagellar biosynthesis, cell-proximal portion of basal-body rod gi: 1787317 (252 aa). BLAST with identity of 96% in 251 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene 1122451..1123233 /gene="flgG" /locus_tag="SF1082" /db_xref="GeneID:1024047" CDS 1122451..1123233 /gene="flgG" /locus_tag="SF1082" /note="Code: N; COG: COG1749" /codon_start=1 /transl_table=11 /product="flagellar basal body rod protein FlgG" /protein_id="NP_706996.1" /db_xref="GeneID:1024047" /translation="MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL LYQTIRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGF FQVMLPDGSSAYIRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVT QQGQAAPVQVGQLNLTTFMNDTGLESIGENLYTETQSSGAPNESTPGLNGAGLLYQGY VETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL" misc_feature 1122451..1123230 /gene="flgG" /locus_tag="SF1082" /note="flagellar basal body rod protein FlgG; Provisional; Region: flgG; PRK12693" /db_xref="CDD:183687" gene 1123286..1123984 /gene="flgH" /locus_tag="SF1083" /db_xref="GeneID:1024037" CDS 1123286..1123984 /gene="flgH" /locus_tag="SF1083" /note="Code: N; COG: COG2063" /codon_start=1 /transl_table=11 /product="flagellar basal body L-ring protein" /protein_id="NP_706997.2" /db_xref="GeneID:1024037" /translation="MQKNAAHTYAISSLLVLSLTGCAWIPSTPLVQGATSAQPVPGPT PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT NFGFDTVPRYLQGLFGNARADVEASGGNTFNGKGGANASNTFSGTLTVTVDQVLVNGN LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNTVPSTQVADARIEYVGNGYINEAQN MGWLQRFFLNLSPM" misc_feature 1123325..1123981 /gene="flgH" /locus_tag="SF1083" /note="flagellar basal body L-ring protein FlgH; Region: flgH; PRK00249" /db_xref="CDD:234700" gene 1123996..1125093 /gene="flgI" /locus_tag="SF1084" /db_xref="GeneID:1024045" CDS 1123996..1125093 /gene="flgI" /locus_tag="SF1084" /note="Code: N; COG: COG1706" /codon_start=1 /transl_table=11 /product="flagellar basal body P-ring biosynthesis protein FlgA" /protein_id="NP_706998.2" /db_xref="GeneID:1024045" /translation="MIKFLSALILLLVTTAAQAERIRDLTSVQGVRQNSLIGYGLVVG LDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQLKNVAAVMVTASLPPFGRQGQT IDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQL NGGRITNGAVIERELPSQFGVGNTLNLQLNDEDFSMAQQIADTINRVRGYGSATALDA RTIQVRVPSGNSSQVRFLADIQNMQVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVA QGNLSVTVNRQANVSQPDTPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSASLNNVVRA LNALGATPMDLMSILQSMQSAGCLRAKLEII" misc_feature 1123996..1125090 /gene="flgI" /locus_tag="SF1084" /note="flagellar basal body P-ring protein FlgI; Region: flgI; PRK05303" /db_xref="CDD:235399" gene 1125093..1126034 /gene="flgJ" /locus_tag="SF1085" /db_xref="GeneID:1024046" CDS 1125093..1126034 /gene="flgJ" /locus_tag="SF1085" /note="Code: N; COG: COG1705" /codon_start=1 /transl_table=11 /product="flagellar rod assembly protein/muramidase FlgJ" /protein_id="NP_706999.2" /db_xref="GeneID:1024046" /translation="MISDSKLLASAAWDAQSLNELKAKASEDPAANIRPVARQVEGMF VQMMLKSMRDALPKDGLFSSEHTRLYTSMYDQQIAQQMTAGKGLGLAEMMVKQMTPEQ PLPEESTPAAPMKFPLETVVRYQNQTLSQLVQKAVPRNYDDSLPGDSRAFLAQLSLPA QLASQQSGVPHHLILAQAALESGWGQRQIRRENGEPSYNLFGVKASGNWKGQVTEITT TEYENGEAKKVKAKFRVYSSYLEALSDYVGLLTRNPRYAAVTTAASAEQGAQVLQDAG YATDPHYARKLTNMIQQMKSISDKVSKTYSMNIDNLF" misc_feature 1125096..1126019 /gene="flgJ" /locus_tag="SF1085" /note="flagellar assembly peptidoglycan hydrolase FlgJ; Region: flgJ; PRK05684" /db_xref="CDD:235559" gene 1126100..1127742 /gene="flgK" /locus_tag="SF1086" /pseudo /db_xref="GeneID:1023617" misc_feature 1126100..1127742 /gene="flgK" /locus_tag="SF1086" /note="'Similar to Escherichia coli K12 flagellar biosynthesis, hook-filament junction protein 1 gi: 1787323 (548 aa). BLAST with identity of 98% in 548 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene 1127754..1128696 /gene="flgL" /locus_tag="SF1087" /pseudo /db_xref="GeneID:1024041" misc_feature 1127754..1128696 /gene="flgL" /locus_tag="SF1087" /note="Similar to Escherichia coli K12 flagellar biosynthesis; hook-filament junction protein gi: 1787324 (318 aa). BLAST with identity of 94% in 314 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1128893..1132075) /gene="rne" /locus_tag="SF1088" /db_xref="GeneID:1024066" CDS complement(1128893..1132075) /gene="rne" /locus_tag="SF1088" /note="Code: J; COG: COG1530" /codon_start=1 /transl_table=11 /product="RNase E" /protein_id="NP_707000.4" /db_xref="GeneID:1024066" /translation="MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKIT RIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQID KEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDY LRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAF QREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLR DLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPS LGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLN EKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMA LPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAATVVAPAPKAATATPAAPAQPG LLSRFFGALKALFSGGEEAKPTEQPTPKAEAKPERQQDRRKPRQSNRRDRNERRDTRS ERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTTDEQQAPRRERSRRRND DKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAP VVEETAAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRS PRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQ REQEEVQVQPMVTEVPVAAAVEPVVSAPVVEEMAEVVEAPVPVAEPQPEVVETTHPEV IAAAVTEQPQVITESDVAVAQEVAEHAEPMVEPQEETADADIEEVAETAEVVVAEPEV VAQPAAPVVAEVAAEVETVAAVEPEITVEHNHATAPMTRAPAPEYVPEAPRHSDWQRP TFAFEGKGAAGGHTATHHASAAPARPQPVE" misc_feature complement(1128905..1132075) /gene="rne" /locus_tag="SF1088" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" gene 1132165..1132539 /locus_tag="SF1089" /db_xref="GeneID:1024032" CDS 1132165..1132539 /locus_tag="SF1089" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707001.1" /db_xref="GeneID:1024032" /translation="MSSRVANLTVIVSSKRRRVSVARFSCGKTAQLSKKQTGYYSPEI FPSTGKDCNPQPANCLKDQYVLRHCCVDDRSGKMGYSVKFLVLTRMDTETASLFHCKP CYSKMTFTIYHPLTHSFFTSCW" gene 1132657..1133616 /gene="yceC" /locus_tag="SF1090" /db_xref="GeneID:1024055" CDS 1132657..1133616 /gene="yceC" /locus_tag="SF1090" /note="Code: J; COG: COG0564" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridylate synthase C" /protein_id="NP_707002.1" /db_xref="GeneID:1024055" /translation="MKTETPSVKIVAITADEAGQRIDNFLRTQLKGVPKSMIYRILRK GEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHI LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL RSLHEQLREKGMQKDYLALVRGQWQSHVKSVQAPLLKNILQSGERIVRVSQEGKPSET RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDRQLTEAGTG LNRLFLHAAALKFTHPGTGEVMRIEAPMDEGLKRCLQKLRNAR" misc_feature 1132657..1133613 /gene="yceC" /locus_tag="SF1090" /note="23S rRNA pseudouridine(955/2504/2580) synthase RluC; Region: PRK11025" /db_xref="CDD:182909" gene complement(1133728..1134351) /gene="yceF" /locus_tag="SF1091" /db_xref="GeneID:1024042" CDS complement(1133728..1134351) /gene="yceF" /locus_tag="SF1091" /note="Code: D; COG: COG0424" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707003.3" /db_xref="GeneID:1024042" /translation="MAIINTLYLMEKNMPKLILASTSPWRRALLEKLQISFECAAPEV DETPRSDESPRQLVLRLAQEKAQSLASRYPDHLIIGSDQVCVLDGEITGKPLTEENAR LQLRKASGNIVTFYTGLALFNSANGHLQTEVEPFDVHFRHLSEAEIDNYVRKEHPLHC AGSFKSEGFGITLFERLEGRDPNTLVGLPLIALCQMLRREGKNPLMG" misc_feature complement(1133737..1134309) /gene="yceF" /locus_tag="SF1091" /note="7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily [Secondary metabolites biosynthesis, transport and catabolism]; Region: Maf; COG0424" /db_xref="CDD:440193" gene 1134511..1135032 /gene="yceD" /locus_tag="SF1092" /db_xref="GeneID:1025410" CDS 1134511..1135032 /gene="yceD" /locus_tag="SF1092" /note="Code: R; COG: COG1399" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707004.1" /db_xref="GeneID:1025410" /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD VECSMSFAIDNQRLAVLNGDAKVTVTLECQRCGKPFTHQVYTTYCFSPVRSDEQAEAL PEAYEPIEVNEFGEIDLLAMVEDEIILALPVVPVHDSEHCEVSEADMVFGELPEEVQK PNPFAVLASLKRK" misc_feature 1134511..1135026 /gene="yceD" /locus_tag="SF1092" /note="23S rRNA accumulation protein YceD; Region: PRK11193" /db_xref="CDD:236878" gene 1135084..1135257 /gene="rpmF" /locus_tag="SF1093" /db_xref="GeneID:1024049" CDS 1135084..1135257 /gene="rpmF" /locus_tag="SF1093" /note="Code: J; COG: COG0333" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L32" /protein_id="NP_707005.1" /db_xref="GeneID:1024049" /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT ADGYYRGRKVIAK" misc_feature 1135087..1135254 /gene="rpmF" /locus_tag="SF1093" /note="Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Region: RpmF; COG0333" /db_xref="CDD:440102" gene 1135368..1136408 /gene="plsX" /locus_tag="SF1094" /db_xref="GeneID:1024064" CDS 1135368..1136408 /gene="plsX" /locus_tag="SF1094" /note="Code: I; COG: COG0416" /codon_start=1 /transl_table=11 /product="PlsX protein" /protein_id="NP_707006.4" /db_xref="GeneID:1024064" /translation="MGGDFGPSVTVPAALQALNSNSQLTLLLVGNPDAITPLLAKADS EQRSRLQIIPAQSVIASDARPSQAIRASRGSSMRMALELVKEGRAQACVSAGNTGALM GLAKLLLKPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQFAIMGSVLAE EVVEIPNPRVALLNIGEEEVKGLDSIRDASAVLKTIPSINYIGYLEANELLTGKTDVL VCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKSLTRRFSHLNP DQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAARLESVYPAGF ELLDGGKSGTLR" misc_feature 1135368..1136354 /gene="plsX" /locus_tag="SF1094" /note="Acyl-ACP:phosphate acyltransferase (fatty acid/phospholipid biosynthesis) [Lipid transport and metabolism]; Region: PlsX; COG0416" /db_xref="CDD:440185" gene 1136476..1137429 /gene="fabH" /locus_tag="SF1095" /db_xref="GeneID:1024024" CDS 1136476..1137429 /gene="fabH" /locus_tag="SF1095" /note="Code: I; COG: COG0332" /codon_start=1 /transl_table=11 /product="3-oxoacyl-ACP synthase III" /protein_id="NP_707007.1" /db_xref="GeneID:1024024" /translation="MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHI AAPNETVSTMGFEAATRAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLDIKG CPAFDVAAACAGFTYALSVADQYVKSGAVKYALVVGSDVLARTCDPTDRGTIIIFGDG AGAAVLAASEEPGIISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVT ELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS AASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVRF" misc_feature 1136476..1137426 /gene="fabH" /locus_tag="SF1095" /note="beta-ketoacyl-ACP synthase 3; Region: PRK09352" /db_xref="CDD:236475" gene 1137445..1138374 /gene="fabD" /locus_tag="SF1096" /db_xref="GeneID:1024028" CDS 1137445..1138374 /gene="fabD" /locus_tag="SF1096" /note="Code: I; COG: COG0331" /codon_start=1 /transl_table=11 /product="malonyl CoA-ACP transacylase" /protein_id="NP_707008.1" /db_xref="GeneID:1024028" /translation="MTQFAFVFPGQGSQTVGMLADMAASYPIVEETFAEASAALGYDL WALTQQGSAEELNKTWQTQPALLTASVALYRVWQQQGGKAPAMMAGHSLGEYSALVCA GVIDFADAVRLVEMRGKFMQEAVPEGTGAMAAIIGLDDAPIAKACEEAAEGQVVSPVN FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAK ITFNAPTVSVVNNVDVKCETNGDAIRDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVG PGKVLTGLTKRIVDTLTASALNEPSAMAAALEL" misc_feature 1137448..1138320 /gene="fabD" /locus_tag="SF1096" /note="malonyl CoA-acyl carrier protein transacylase; Region: fabD; TIGR00128" /db_xref="CDD:272922" gene 1138387..1139121 /gene="fabG" /locus_tag="SF1097" /db_xref="GeneID:1026267" CDS 1138387..1139121 /gene="fabG" /locus_tag="SF1097" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="3-ketoacyl-ACP reductase" /protein_id="NP_707009.1" /db_xref="GeneID:1026267" /translation="MNFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQA ISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEE WNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIG FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIANA VAFLASDEAAYITGETLHVNGGMYMV" misc_feature 1138387..1139118 /gene="fabG" /locus_tag="SF1097" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557" /db_xref="CDD:235500" gene 1139332..1139568 /gene="acpP" /locus_tag="SF1098" /db_xref="GeneID:1024038" CDS 1139332..1139568 /gene="acpP" /locus_tag="SF1098" /note="Code: IQ; COG: COG0236" /codon_start=1 /transl_table=11 /product="acyl carrier protein" /protein_id="NP_707010.1" /db_xref="GeneID:1024038" /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA" misc_feature 1139332..1139565 /gene="acpP" /locus_tag="SF1098" /note="acyl carrier protein; Provisional; Region: acpP; PRK00982" /db_xref="CDD:179197" gene 1139654..1140895 /gene="fabF" /locus_tag="SF1099" /db_xref="GeneID:1024036" CDS 1139654..1140895 /gene="fabF" /locus_tag="SF1099" /note="Code: IQ; COG: COG0304" /codon_start=1 /transl_table=11 /product="3-oxoacyl-ACP synthase" /protein_id="NP_707011.1" /db_xref="GeneID:1024036" /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS AYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEITEENATRIG AAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI ATACTSGVHNIGHAARIIAYGDADVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA ASRPWDKERDGFVLGDGAGMLVLEEYEHAKKRGAKIYAELVGFGMSSDAYHMTSPPEN GAGAALAMANALRDAGIEASQIGYVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSS TKSMTGHLLGAAGAVESIYSILALRDQAVPPTINLDNPDEGCDLDFVPHEARQVSGME YTLCNSFGFGGTNGSLIFKKI" misc_feature 1139660..1140892 /gene="fabF" /locus_tag="SF1099" /note="beta-ketoacyl-ACP synthase II; Region: PRK07314" /db_xref="CDD:235987" misc_feature order(1139975..1139977,1139996..1140001,1140011..1140013, 1140017..1140022,1140056..1140058,1140074..1140076, 1140086..1140088,1140098..1140100,1140116..1140118, 1140122..1140124,1140128..1140136,1140170..1140172, 1140179..1140184,1140191..1140193,1140254..1140259, 1140266..1140271,1140443..1140457,1140497..1140499, 1140857..1140859,1140863..1140865) /gene="fabF" /locus_tag="SF1099" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238430" misc_feature order(1140143..1140145,1140563..1140565,1140674..1140676) /gene="fabF" /locus_tag="SF1099" /note="active site" /db_xref="CDD:238430" gene 1141015..1141824 /gene="pabC" /locus_tag="SF1100" /db_xref="GeneID:1024054" CDS 1141015..1141824 /gene="pabC" /locus_tag="SF1100" /note="Code: EH; COG: COG0115" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxychorismate lyase" /protein_id="NP_707012.1" /db_xref="GeneID:1024054" /translation="MFLINGYKQESLAVSDRATQFGDGCFTTARVIDGKVSLLSAHIL RLQDACQRLMISCDFWPQLEQEMKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATR ILSVTAYPAHYDRLRNEGMTLALSPVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNAD EALVLDSEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVE VQASLEEALQADEMVICNALMPVMPVRACGDVTFSSATLYEYLAPLCERPN" misc_feature 1141015..1141818 /gene="pabC" /locus_tag="SF1100" /note="4-amino-4-deoxychorismate lyase; Reviewed; Region: PRK06092" /db_xref="CDD:235696" misc_feature order(1141147..1141149,1141432..1141434,1141531..1141533) /gene="pabC" /locus_tag="SF1100" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:238800" misc_feature 1141432..1141434 /gene="pabC" /locus_tag="SF1100" /note="catalytic residue [active]" /db_xref="CDD:238800" gene 1141827..1142849 /gene="yceG" /locus_tag="SF1101" /db_xref="GeneID:1024043" CDS 1141827..1142849 /gene="yceG" /locus_tag="SF1101" /note="Code: R; COG: COG1559" /codon_start=1 /transl_table=11 /product="aminodeoxychorismate lyase" /protein_id="NP_707013.1" /db_xref="GeneID:1024043" /translation="MKKVLLIILLLLVVLGIAAGVGVWKVRHLADSKLLIKEETIFTL KPGTGRLALGEQLYADKIINRPRVFQWLLRIEPDLSHFKAGTYRFTPQMTVREMLKLL ESGKEAQFPLRLVEGMRLSDYLKQLREAPYIKHTLSDDKYATVAQALELENPEWIEGW FWPDTLMYTANTTDVALLKRVHKKMVKAVDSAWEGRADGLPYKDKNQLVTMASIIEKE TAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGERYNGKLSRADLETPTAYNTYTI TGLPPGAIATPGADSLKAAAHPAKTPYLYFVADGKGGHTFNTNLASHNKSVQDYLKVL KEKNAQ" misc_feature 1141827..1142846 /gene="yceG" /locus_tag="SF1101" /note="putative aminodeoxychorismate lyase; Provisional; Region: PRK10270" /db_xref="CDD:182348" misc_feature order(1142070..1142072,1142076..1142093,1142118..1142120, 1142130..1142132,1142151..1142156,1142163..1142165, 1142553..1142555,1142559..1142561,1142610..1142612, 1142619..1142621,1142760..1142765,1142784..1142786, 1142793..1142798,1142805..1142807) /gene="yceG" /locus_tag="SF1101" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381750" gene 1142839..1143480 /gene="tmk" /locus_tag="SF1102" /db_xref="GeneID:1024058" CDS 1142839..1143480 /gene="tmk" /locus_tag="SF1102" /note="Code: F; COG: COG0125" /codon_start=1 /transl_table=11 /product="thymidylate kinase" /protein_id="NP_707014.1" /db_xref="GeneID:1024058" /translation="MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGT QLAEKLRSLVLDIKSVGDEVITDKAEVLMFYAARVQLVETVIKPALANGTWVIGDRHD LSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGELDRIE QESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTHWVKELDA" misc_feature 1142839..1143438 /gene="tmk" /locus_tag="SF1102" /note="dTMP kinase; Region: DTMP_kinase; TIGR00041" /db_xref="CDD:161676" misc_feature order(1142887..1142889,1143058..1143060,1143070..1143072, 1143133..1143138,1143160..1143162,1143295..1143297) /gene="tmk" /locus_tag="SF1102" /note="TMP-binding site [active]" /db_xref="CDD:238835" misc_feature order(1142890..1142892,1143283..1143285,1143403..1143405) /gene="tmk" /locus_tag="SF1102" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238835" gene 1143477..1144481 /gene="holB" /locus_tag="SF1103" /db_xref="GeneID:1024040" CDS 1143477..1144481 /gene="holB" /locus_tag="SF1103" /note="Code: L; COG: COG0470" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit delta'" /protein_id="NP_707015.1" /db_xref="GeneID:1024040" /translation="MRWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYAL SRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGIDAVREVTEKLNE HARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCR LHYLAPPPEQYAVTWLSREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQ ALAYSVPSGDWYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAE LANHLSPSRLQAILGDVCHIREQLMSVTGINRELLITDLLLRIEHYLQPGVVLPVPHL " misc_feature 1143477..1144478 /gene="holB" /locus_tag="SF1103" /note="DNA polymerase III subunit delta'; Validated; Region: PRK07993" /db_xref="CDD:181190" gene 1144492..1145289 /gene="ycfH" /locus_tag="SF1104" /db_xref="GeneID:1024039" CDS 1144492..1145289 /gene="ycfH" /locus_tag="SF1104" /note="Code: L; COG: COG0084" /codon_start=1 /transl_table=11 /product="DNAse" /protein_id="NP_707016.2" /db_xref="GeneID:1024039" /translation="MFLVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTL PGYLHMRDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVEPLCETGLDYYYT PETKVLQRESFIHHIQIARELNKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE NQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQSIR" misc_feature 1144492..1145286 /gene="ycfH" /locus_tag="SF1104" /note="putative DNAse; Provisional; Region: PRK10812" /db_xref="CDD:236767" misc_feature order(1144510..1144512,1144516..1144518,1144879..1144881, 1144954..1144956,1145104..1145106) /gene="ycfH" /locus_tag="SF1104" /note="active site" /db_xref="CDD:238635" gene 1145585..1147018 /gene="ptsG" /locus_tag="SF1105" /db_xref="GeneID:1024074" CDS 1145585..1147018 /gene="ptsG" /locus_tag="SF1105" /note="Code: G; COG: COG1263" /codon_start=1 /transl_table=11 /product="PTS system glucose-specific transporter subunits IIBC" /protein_id="NP_707017.1" /db_xref="GeneID:1024074" /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH LPAEEIASKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA AIFTGVVLSFIWPPIGSAIQTFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGKLSGGFLFKMYGLPAAAIAIWHSAKPEN RAKVGGIMISAALTSFLTGITEPIEFFFMFVAPILYIIHAILAGLAFPICILLGMRDG TSFSHGLIDFIVLSGNSSKLWLLPIVGIGYAIVYYTIFRVLIKALDLKTPGREDATED AKATGTSEMAPALVAAFGGKENITNLDACITRLRVSVADVSKVDQAGLKKLGAAGVVV AGSGVQAIFGTKSDNLKTEMDEYIRNH" misc_feature 1145585..1147015 /gene="ptsG" /locus_tag="SF1105" /note="PTS system glucose-specific transporter subunits IIBC; Provisional; Region: PRK11089" /db_xref="CDD:182955" gene complement(1147078..1149263) /gene="fhuE" /locus_tag="SF1106" /pseudo /db_xref="GeneID:1024035" misc_feature complement(1147078..1149263) /gene="fhuE" /locus_tag="SF1106" /note="Similar to Escherichia coli K12 outer membrane receptor for ferric iron uptake gi: 1787344 (730 aa). BLAST with identity of 99% in 728 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1149602..1149961 /gene="ycfF" /locus_tag="SF1107" /db_xref="GeneID:1024069" CDS 1149602..1149961 /gene="ycfF" /locus_tag="SF1107" /note="Code: FGR; COG: COG0537" /codon_start=1 /transl_table=11 /product="purine nucleoside phosphoramidase" /protein_id="NP_707018.2" /db_xref="GeneID:1024069" /translation="MAEETIFSKIIRREIPSDIVYQDDLVTAFRDISPQAPTHILIIP NILIPTVNDVSAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM HLLGGRPLGPMLAHKGL" misc_feature 1149602..1149958 /gene="ycfF" /locus_tag="SF1107" /note="purine nucleoside phosphoramidase; Provisional; Region: PRK10687" /db_xref="CDD:182648" misc_feature order(1149686..1149688,1149692..1149697,1149716..1149718, 1149722..1149724,1149863..1149865,1149884..1149886, 1149890..1149892,1149902..1149904,1149908..1149910) /gene="ycfF" /locus_tag="SF1107" /note="nucleotide binding site/active site [active]" /db_xref="CDD:238607" misc_feature order(1149896..1149898,1149902..1149904,1149908..1149916) /gene="ycfF" /locus_tag="SF1107" /note="HIT family signature motif [active]" /db_xref="CDD:238607" misc_feature 1149902..1149904 /gene="ycfF" /locus_tag="SF1107" /note="catalytic residue [active]" /db_xref="CDD:238607" gene 1149964..1150341 /gene="ycfL" /locus_tag="SF1108" /db_xref="GeneID:1025390" CDS 1149964..1150341 /gene="ycfL" /locus_tag="SF1108" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707019.1" /db_xref="GeneID:1025390" /translation="MRKGCFGLVSLVLLLLVGCRSHPEIPVNDEQSLVMESSLLAAGI SAEKPVLSTSDIQPSASSTIYNERQEPVTVHYRFYWYDARGLEMHPLERPRSVTIPAH SAVTLYGSANFLGAHKVRLYLYL" misc_feature 1150015..1150338 /gene="ycfL" /locus_tag="SF1108" /note="Uncharacterized conserved protein YcfL [Function unknown]; Region: YcfL; COG5633" /db_xref="CDD:444360" misc_feature order(1150033..1150047,1150060..1150062,1150093..1150095, 1150099..1150101,1150105..1150107,1150243..1150245, 1150321..1150335) /gene="ycfL" /locus_tag="SF1108" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:176923" gene 1150356..1150996 /locus_tag="SF1109" /pseudogene="unknown" /db_xref="GeneID:1024081" gene 1150977..1151801 /gene="thiK" /locus_tag="SF1110" /db_xref="GeneID:1024080" CDS 1150977..1151801 /gene="thiK" /locus_tag="SF1110" /note="Code: M; COG: COG0510" /codon_start=1 /transl_table=11 /product="thiamine kinase" /protein_id="NP_707021.1" /db_xref="GeneID:1024080" /translation="MPFRSNNPITRDELLSRFFPQFHPVTTFNSGLSGGSFLIEHQGQ RFVVRQPHDPDAPQSAFLRQYRALSQLPASIAPKPHLYLRDWMVVDYLPGAVKTYLPD TNELAGLLYYLHQQPRFGWRITLLPLLELYWQQSDPARRTVGWLRMLKRLRKAREPRP LRLSPLHMDVHAGNLVHSASGLKLIDWEYAGDGDIALELAAVWVENTEQHRQLVNDYA TRAKIYPAQLWRQVRRWFPWLLMLKGGWFEYRWRQTGDQQFIRLADDTWRQLLIKQ" misc_feature order(1151070..1151081,1151082..1151084,1151115..1151117, 1151121..1151123,1151205..1151207,1151241..1151252, 1151481..1151483,1151493..1151498,1151502..1151504, 1151529..1151534) /gene="thiK" /locus_tag="SF1110" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270700" misc_feature 1151235..1151798 /gene="thiK" /locus_tag="SF1110" /note="thiamine kinase; Provisional; Region: thiK; PRK10271" /db_xref="CDD:182349" gene 1151812..1152837 /gene="ycfO" /locus_tag="SF1111" /db_xref="GeneID:1024077" CDS 1151812..1152837 /gene="ycfO" /locus_tag="SF1111" /note="Code: G; COG: COG1472" /codon_start=1 /transl_table=11 /product="beta-hexosaminidase" /protein_id="NP_707022.1" /db_xref="GeneID:1024077" /translation="MGPVMLDVEGYELDAEEREILAHPLVGGLILFTRNYHDPAQLRE LVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFAALLGMEEGGKLAQEAGW LMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPQKALAIASRFIDGMHEAGMKT TGKHFPGHGAVTADSHKETPCDPRPQAEIRAKDMSVFSSLIRENKLDAIMPAHVIYSD VDPRPASGSPYWLKTVLRQELGFDGVIFSDDLSMEGAAIMGSYAERGQASLDAGCDMI LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRQELMDSARWKAISTRLNQLHERW QEEKAGH" misc_feature 1151812..1152816 /gene="ycfO" /locus_tag="SF1111" /note="beta-hexosaminidase; Provisional; Region: PRK05337" /db_xref="CDD:235417" gene 1152860..1153402 /gene="ycfP" /locus_tag="SF1112" /db_xref="GeneID:1023394" CDS 1152860..1153402 /gene="ycfP" /locus_tag="SF1112" /note="Code: R; COG: COG3150" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707023.2" /db_xref="GeneID:1023394" /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLISYSTRHPKHDMQ HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVIFNPNLFPYENMEGKI DRPEEYADIATKCVTNFREKNRDRCLVILSRNDEALNSQRTSEELHHYYEIVWDEEQT HKFKNISPHLQRIKAFKTLG" misc_feature 1152860..1153399 /gene="ycfP" /locus_tag="SF1112" /note="hypothetical protein; Provisional; Region: PRK04940" /db_xref="CDD:179896" gene 1153810..1155114 /gene="ndh" /locus_tag="SF1113" /db_xref="GeneID:1024070" CDS 1153810..1155114 /gene="ndh" /locus_tag="SF1113" /note="Code: C; COG: COG1252" /codon_start=1 /transl_table=11 /product="respiratory NADH dehydrogenase" /protein_id="NP_707024.2" /db_xref="GeneID:1024070" /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHS HLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDE KGELLVPERKIAYDTLVMALGSTSNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLK YSANLGANGKVNIAIVGGGATGVELSAELHNAIKQLHSYGYKGLTNEALNVTLVEAGE RILPALPPRISAAAHNELTKLGVRVLTQTMVTSADEGGLHTKDGEYIEADLMVWAAGI KAPDFLKDIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCPRPEGGFVPPRAQAA HQMATCAMNNILAQMNGKPLKNYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRI ARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH" misc_feature 1153861..1155057 /gene="ndh" /locus_tag="SF1113" /note="NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252" /db_xref="CDD:440864" gene 1155341..1155880 /gene="ycfJ" /locus_tag="SF1114" /db_xref="GeneID:1024075" CDS 1155341..1155880 /gene="ycfJ" /locus_tag="SF1114" /note="Code: S; COG: COG3134" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707025.2" /db_xref="GeneID:1024075" /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFERGPQYAQVVSATPIK ETVKTPRQECRNVTVTHRRPVQDENRITGSVLGAVAGGVIGHQFGGGRGKDVATVVGA LGGGYAGNQIQGSLQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDRD PGTQIPLDSNGQLILNNKV" misc_feature 1155359..1155868 /gene="ycfJ" /locus_tag="SF1114" /note="hypothetical protein; Provisional; Region: PRK11280" /db_xref="CDD:183072" gene complement(1155942..1156652) /gene="ycfQ" /locus_tag="SF1115" /db_xref="GeneID:1024057" CDS complement(1155942..1156652) /gene="ycfQ" /locus_tag="SF1115" /note="Code: K; COG: COG1309" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707026.1" /db_xref="GeneID:1024057" /translation="MESGLVNGGDYFYNNLSFTVTRYNGIMATDSTQCVKKSRGRPKV FDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKEGLFRAVLDRYID RFAAKHEAQLFCEEKSVESALADYFAAIANCFTSKDTPAGCFMINNCTTLSPDSGDIA NTLKSRHAMQERTLQQFLCQRQARGEIPTHCDVTHLAEFLNCIIQGMSISAREGASLE KLMQIAGTTLRLWPELVK" misc_feature complement(1156035..1156532) /gene="ycfQ" /locus_tag="SF1115" /note="DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:440920" gene 1156859..1157071 /gene="ycfR" /locus_tag="SF1116" /db_xref="GeneID:1024071" CDS 1156859..1157071 /gene="ycfR" /locus_tag="SF1116" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707027.1" /db_xref="GeneID:1024071" /translation="MSFANFAAVEVQSTPEGQQKVGTISANAGTNLGSLEEQLAQKAD EMGAKSFRITSVTGPNTLHGTAVIYK" misc_feature 1156910..1157065 /gene="ycfR" /locus_tag="SF1116" /note="YdgH/BhsA/McbA-like domain; Region: YdgH_BhsA-like; pfam07338" /db_xref="CDD:429417" gene complement(1157154..1158116) /gene="ycfS" /locus_tag="SF1117" /db_xref="GeneID:1024089" CDS complement(1157154..1158116) /gene="ycfS" /locus_tag="SF1117" /note="Code: S; COG: COG1376" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707028.2" /db_xref="GeneID:1024089" /translation="MMIKTRFSRWLTFFTFAAAVALALPAKANTWPLPPASSRLVGEN KFHVVENDGGSLEAIAKKYNVGFLALLQANPGVDPYVPRAGSVLTIPLQTLLPDAPRE GIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTMVTTVSDKRANPTWTPTAN IRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCI RLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQPLSEKIDDDPQLLPI TLNSAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRRHQVSPQTL" misc_feature complement(1157193..1158029) /gene="ycfS" /locus_tag="SF1117" /note="L,D-transpeptidase; Provisional; Region: PRK10260" /db_xref="CDD:182341" gene complement(1158259..1161705) /gene="mfd" /locus_tag="SF1118" /db_xref="GeneID:1024090" CDS complement(1158259..1161705) /gene="mfd" /locus_tag="SF1118" /note="Code: LK; COG: COG1197" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="NP_707029.2" /db_xref="GeneID:1024090" /translation="MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVL IAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ RGILIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHG EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEAEAINLLPAHEFP TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW PRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDKARNLALICESDLL GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA IA" misc_feature complement(1158265..1161705) /gene="mfd" /locus_tag="SF1118" /note="transcription-repair coupling factor; Provisional; Region: PRK10689" /db_xref="CDD:182649" gene complement(1161833..1162906) /gene="ycfT" /locus_tag="SF1119" /db_xref="GeneID:1024073" CDS complement(1161833..1162906) /gene="ycfT" /locus_tag="SF1119" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707030.1" /db_xref="GeneID:1024073" /translation="MKQKELWINQIKGLCICLVVIYHSVITFYPHMTTFQHPLSEVLS KCWIYFNLYLAPFRMPVFFFISGYLIRRYIDSVPWGNCLDKRIWNIFWVLALWGVVQW LALSALNQWLAPERDLSNASNAAYADSTGEFLHGMITASTSLWYLYALIVYFVVCKIF SRLALPLFALFVLLSVAVNFVPTPWWGMNSVIRNLPYYSLGAWFGATIMTCVKEVPLR RHLLMASLLTVLAVGAWLFTISLLLSLVSIVVIMKLFYQYEQRFGMRSTSLLNVIGSN TIAIYTTHRILVEIFSLTLLAQMNAARWSPQVELTLLLVYPFVSLFICTVAGLLVRKL SQRAFSDLLFSPPSLPAAVSYSR" misc_feature complement(1161836..1162903) /gene="ycfT" /locus_tag="SF1119" /note="Uncharacterized membrane protein YcfT [Function unknown]; Region: YcfT; COG4763" /db_xref="CDD:443795" gene 1163168..1164367 /gene="ycfU" /locus_tag="SF1120" /db_xref="GeneID:1024063" CDS 1163168..1164367 /gene="ycfU" /locus_tag="SF1120" /note="Code: R; COG: COG0577" /codon_start=1 /transl_table=11 /product="outer membrane-specific lipoprotein transporter subunit LolC" /protein_id="NP_707031.2" /db_xref="GeneID:1024063" /translation="MYQPVALFIGLRYMRGRAVDRFGRFVSWLSTIGITLGVMALVTV LSVMNGFERELQNNILGLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVV LQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGD QIRVMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGYEMLVNIEDASRLMRYPAAN ITGWRLWLDEPLRVDSLSQQKLPEGSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVA VAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGAILGAALGA LLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQP AEALRYE" misc_feature 1163168..1164364 /gene="ycfU" /locus_tag="SF1120" /note="lipoprotein-releasing ABC transporter permease subunit LolC; Region: PRK10814" /db_xref="CDD:182753" gene 1164360..1165061 /gene="lolD" /locus_tag="SF1121" /db_xref="GeneID:1026274" CDS 1164360..1165061 /gene="lolD" /locus_tag="SF1121" /note="Code: R; COG: COG1136" /codon_start=1 /transl_table=11 /product="lipoprotein transporter ATP-binding subunit" /protein_id="NP_707032.1" /db_xref="GeneID:1026274" /translation="MNKILLQCDNLCKRYQEGSVQTDVLLNVSFSVGEGEMMAIVGSS GSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF TALENVAMPLLIGKKKPAEINSCALEMLKAVGLEHRANHRPSELSGGERQRVAIARAL VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM RDGRLTAELSLMGAE" misc_feature 1164360..1165058 /gene="lolD" /locus_tag="SF1121" /note="lipoprotein-releasing ABC transporter ATP-binding protein LolD; Region: lolD; PRK11629" /db_xref="CDD:183244" gene 1165061..1166305 /gene="ycfW" /locus_tag="SF1122" /db_xref="GeneID:1024076" CDS 1165061..1166305 /gene="ycfW" /locus_tag="SF1122" /note="Code: R; COG: COG0577" /codon_start=1 /transl_table=11 /product="outer membrane-specific lipoprotein transporter subunit LolE" /protein_id="NP_707033.1" /db_xref="GeneID:1024076" /translation="MAMPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG LSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWQEALDNVQKVPGIAAAAPYINFTG LVESGANLRAIQVKGVNPQQEQRLSALPSFVQGDAWRNFKAGEQQIIIGKGVADALKV KQGDWVSIMIPNSNPEHKLMQPKRVRLHIAGILQLSGQLDHSFAMIPLADAQQYLDMG SSVSGIALKMTDVFNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM VLVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLFGSLCG VVIGVVVSLQLTPIIEWIEKLIGHQFLSSDIYFIDFLPSELHWLDVFYVLVTALLLSL LASWYPARRASNIDPARVLSGQ" misc_feature 1165067..1166302 /gene="ycfW" /locus_tag="SF1122" /note="lipoprotein-releasing ABC transporter permease subunit LolE; Region: PRK11146" /db_xref="CDD:236860" gene 1166334..1167245 /gene="ycfX" /locus_tag="SF1123" /db_xref="GeneID:1024059" CDS 1166334..1167245 /gene="ycfX" /locus_tag="SF1123" /note="Code: K; COG: COG1940" /codon_start=1 /transl_table=11 /product="N-acetyl-D-glucosamine kinase" /protein_id="NP_707034.1" /db_xref="GeneID:1024059" /translation="MYYGFDIGGTKIALGVFDSGRQLQWEKRVPTPRDSYDAFLDAVC ELVAEADQRFGCKGSVGIGIPGMPETEDGKLYAANVPAASGKPLRADLSARLDRDVRL DNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVFNGKPITGKSYITGEFGHMRL PVDALTMMGLDFPLRRCGCGQHGCIENYLSGRGFAWLYQHYYHQPLQAPEIIALYDQG DEQARAHVERYLDLLAVSLGNILTIVDPDLVVIGGGLSNFPAITTQLADRLPCHLLPV ARVPRIERARHGDAGGMRGAAFLHLTD" misc_feature 1166334..1167242 /gene="ycfX" /locus_tag="SF1123" /note="N-acetyl-D-glucosamine kinase; Provisional; Region: PRK13310" /db_xref="CDD:183967" gene 1167261..1168082 /gene="cobB" /locus_tag="SF1124" /db_xref="GeneID:1024068" CDS 1167261..1168082 /gene="cobB" /locus_tag="SF1124" /note="Code: H; COG: COG0846" /codon_start=1 /transl_table=11 /product="NAD-dependent deacetylase" /protein_id="NP_707035.1" /db_xref="GeneID:1024068" /translation="MLSRRGHRLSRFRKNKRRLRERLRQRIFFRDKVVPEAMEKPRVL VLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFDRDPELVQAFYNARRRQLQQP EIQPNAAHLALAKLQDALGDRFLLVTQNIDNLHERAGNTNVIHMHGELLKVRCSQSGQ VLDWTGDVTPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADVFIAIGTSGH VYPAAGFVHEAKLHGAHTVELNLEPSQVGNEFAEKYYGPASQVVPEFVEKLLEGL" misc_feature 1167351..1168073 /gene="cobB" /locus_tag="SF1124" /note="NAD-dependent deacetylase; Provisional; Region: PRK00481" /db_xref="CDD:234777" misc_feature order(1167408..1167410,1167414..1167419,1167438..1167443, 1167588..1167590,1167645..1167650,1167654..1167656, 1167699..1167701,1167900..1167902,1167915..1167917, 1167981..1167986,1168029..1168031) /gene="cobB" /locus_tag="SF1124" /note="NAD+ binding site [chemical binding]; other site" /db_xref="CDD:238703" misc_feature order(1167651..1167653,1167699..1167701,1167822..1167824, 1167828..1167839,1167912..1167920) /gene="cobB" /locus_tag="SF1124" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238703" misc_feature order(1167723..1167725,1167732..1167734,1167780..1167782, 1167789..1167791) /gene="cobB" /locus_tag="SF1124" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:238703" gene complement(1168238..1169284) /gene="potD" /locus_tag="SF1125" /db_xref="GeneID:1024061" CDS complement(1168238..1169284) /gene="potD" /locus_tag="SF1125" /note="Code: E; COG: COG0687" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter substrate-binding protein" /protein_id="NP_707036.1" /db_xref="GeneID:1024061" /translation="MKKWSRHLLAAGALALGMSAAHADDNNTLYFYNWTEYVPPGLLE QFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS KLTNFSNLDPDMLNKPFDPNNDYSIPYIWGATAIGVNGDAVDPKSVTSWADLWKPEYK GSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPY MEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN FLLRPDVAKQVAETIGYPTPNLAARKLLSPEVANDKTLYPDAETIKNGEWQNDVGAAS SIYEEYYQKLKAGR" misc_feature complement(1168241..1169284) /gene="potD" /locus_tag="SF1125" /note="spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed; Region: potD; PRK09501" /db_xref="CDD:181913" misc_feature complement(order(1168574..1168576,1168580..1168582, 1168625..1168630,1168637..1168639,1169105..1169107, 1169111..1169122,1169153..1169155,1169162..1169167, 1169180..1169182,1169195..1169197)) /gene="potD" /locus_tag="SF1125" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:270378" misc_feature complement(order(1168406..1168408,1168514..1168516, 1168520..1168522,1168589..1168591,1168598..1168600, 1169183..1169185)) /gene="potD" /locus_tag="SF1125" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270378" gene complement(1169281..1170075) /gene="potC" /locus_tag="SF1126" /db_xref="GeneID:1024056" CDS complement(1169281..1170075) /gene="potC" /locus_tag="SF1126" /note="Code: E; COG: COG1177" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter permease" /protein_id="NP_707037.1" /db_xref="GeneID:1024056" /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT KWYSLLMNNDSLLQAAQHSLTMAVFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV VMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFCLPFVVVTVYSRLKGFDVRMLE AAKDLGASEFTILRKIILPLAMPAVAAGWVLSFTLSMDDVVVSSFVTGPSYEILPLKI YSMVKVGVSPEVNALATILLVLSLVMVIASQLIARDKTKGNGGDVK" misc_feature complement(1169305..1170072) /gene="potC" /locus_tag="SF1126" /note="spermidine/putrescine ABC transporter membrane protein; Reviewed; Region: potC; PRK09500" /db_xref="CDD:236542" gene complement(1170072..1170899) /gene="potB" /locus_tag="SF1127" /db_xref="GeneID:1024098" CDS complement(1170072..1170899) /gene="potB" /locus_tag="SF1127" /note="Code: E; COG: COG1176" /codon_start=1 /transl_table=11 /product="spermidine/putrescine ABC transporter permease" /protein_id="NP_707038.4" /db_xref="GeneID:1024098" /translation="MIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFVKMVFTLDNYT RLLDPLYFEVLLHSLNMALIATLACLVLGYPFAWFLAKLPHKVRPLLLFLLIVPFWTN SLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYILLPFMVMPLY SSIEKLDKPLLEAARDLGASKLQTFIRIIIPLTMPGIIAGCLLVMLPAMGLFYVSDLM GGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLVYWRASRLLNKKVELE" misc_feature complement(1170075..1170899) /gene="potB" /locus_tag="SF1127" /note="spermidine/putrescine ABC transporter membrane protein; Reviewed; Region: potB; PRK09497" /db_xref="CDD:181910" misc_feature complement(order(1170138..1170140,1170147..1170152, 1170159..1170164,1170168..1170173,1170180..1170185, 1170213..1170218,1170249..1170254,1170261..1170272, 1170291..1170293,1170300..1170305,1170345..1170347, 1170396..1170398,1170405..1170410,1170420..1170422, 1170426..1170431,1170438..1170440,1170444..1170446, 1170450..1170455,1170528..1170530,1170573..1170578, 1170585..1170614,1170618..1170629,1170657..1170659, 1170672..1170677,1170684..1170689)) /gene="potB" /locus_tag="SF1127" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1170255..1170272,1170528..1170530, 1170570..1170611)) /gene="potB" /locus_tag="SF1127" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(1170183..1170185,1170213..1170215, 1170222..1170224,1170252..1170254,1170468..1170470, 1170528..1170530)) /gene="potB" /locus_tag="SF1127" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(1170324..1170326,1170336..1170341, 1170357..1170395)) /gene="potB" /locus_tag="SF1127" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(1170913..1172049) /gene="potA" /locus_tag="SF1128" /db_xref="GeneID:1024051" CDS complement(1170913..1172049) /gene="potA" /locus_tag="SF1128" /note="Code: G; COG: COG1130" /codon_start=1 /transl_table=11 /product="putrescine/spermidine ABC transporter ATPase" /protein_id="NP_707039.1" /db_xref="GeneID:1024051" /translation="MGQSKKLNKQPSSLSPLVQLAGIRKCFDGKEVIPQLDLTINNGE FLTLLGPSGCGKTTVLRLIAGLETVDSGRIMLDNEDITHVPAENRYVNTVFQSYALFP HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLETFAQRKPHQLSGGQQQRVAIAR AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI VVMRDGRIEQDGTPREIYEEPKNLFVAGFIGEINMFNATVIERLDEQRVRANVEGREC NIYVNFAVEPGQKLHVLLRPEDLRVEEINDDNHAEGLIGYVRERNYKGMTLESVVELE NGKMVMVSEFFNEDDPDFDHSLDQKMAINWVESWEVVLADEEHK" misc_feature complement(1170916..1172040) /gene="potA" /locus_tag="SF1128" /note="spermidine/putrescine ABC transporter ATP-binding protein PotA; Region: potA; PRK09452" /db_xref="CDD:236523" gene 1172299..1173525 /gene="pepT" /locus_tag="SF1129" /db_xref="GeneID:1024052" CDS 1172299..1173525 /gene="pepT" /locus_tag="SF1129" /note="Code: E; COG: COG2195" /codon_start=1 /transl_table=11 /product="peptidase T" /protein_id="NP_707040.2" /db_xref="GeneID:1024052" /translation="MDKLLERFLNYVSLDTQSKAGVRQVPSTEGQWKLLHLLKEQLEE MGLINVTLSEKGTLMATLPANVPGDIPAIGFISHVDTSPDCSGKNVNPQIVENYRGGD IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGIAEIMTALAVLQQKNI PHGDIRVAFTPDEEVGKGAKHFDVDAFDARWAYTVDGGGVGELEFENFNAASVNIKIV GNNVHPGTAKGVMVNALSLAARIHAEVPADESPEMTEGYEGFYHLASMKGTVERADMH YIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD IAQQAMRDCDIEPELKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVILEGMEK AVQVIVRIAELTAQRK" misc_feature 1172299..1173522 /gene="pepT" /locus_tag="SF1129" /note="tripeptide aminopeptidase PepT; Region: PRK05469" /db_xref="CDD:235484" misc_feature order(1172548..1172550,1172965..1172973,1172977..1172985, 1172989..1172991,1172995..1172997,1173001..1173006, 1173013..1173015,1173022..1173024,1173049..1173063, 1173076..1173078,1173082..1173108,1173355..1173357, 1173433..1173435) /gene="pepT" /locus_tag="SF1129" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349887" gene complement(1173574..1174704) /gene="ycfD" /locus_tag="SF1130" /db_xref="GeneID:1024101" CDS complement(1173574..1174704) /gene="ycfD" /locus_tag="SF1130" /note="Code: S; COG: COG2850" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707041.1" /db_xref="GeneID:1024101" /translation="MLNMEYQLTLNWPDFLERHWQKRPVVLKRGFNNFIDPISPDELA GLAMESEVDSRLVSHQDGKWQVSHGPFESYDHLGETNWSLLVQAVNHWHEPTAALMRP FRELPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMKQHCPHP DLLQVDPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNTRELISGFA DYVLQRELGGNYYSDPDVPPRAHPADVLPQEMDKLREMMLELINQPEHFKQWFGEFIS QSRHELDIAPPEPPYQPDEIYDALKQGDVLVRLGGLRVLRIGDDVYANGEKIDSPHRP ALDALASNIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG" misc_feature complement(1173868..1174677) /gene="ycfD" /locus_tag="SF1130" /note="Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain [Translation, ribosomal structure and biogenesis]; Region: RoxA; COG2850" /db_xref="CDD:442098" misc_feature complement(1173586..1173930) /gene="ycfD" /locus_tag="SF1130" /note="ROXA-like winged helix; Region: ROXA-like_wH; pfam20514" /db_xref="CDD:466663" gene 1174944..1176173 /locus_tag="SF1131" /pseudogene="unknown" /db_xref="GeneID:1023407" gene 1178175..1178408 /locus_tag="SF1133a" /db_xref="GeneID:16608315" CDS 1178175..1178408 /locus_tag="SF1133a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439238.1" /db_xref="GeneID:16608315" /translation="MRDIYHETIDRAFLALSHSENMLEILRIWLETLGDNERDKQKSR IATALITLLEPVIMELQEIDLLHDRYKEQHTGE" gene 1178414..1178713 /locus_tag="SF1134" /db_xref="GeneID:1024092" CDS 1178414..1178713 /locus_tag="SF1134" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707045.1" /db_xref="GeneID:1024092" /translation="MKLKYSGLTASGNTHPKFTRGDIYRDQYGGMVTIKGVAERRITY RREGYEYDCVMPVYQFRRDFTLVQAAPRSKPTSREKARANIQEIKKMLNVFRGKK" misc_feature 1178459..1178617 /locus_tag="SF1134" /note="Domain of unknown function (DUF4222); Region: DUF4222; pfam13973" /db_xref="CDD:372855" gene 1178710..1180458 /locus_tag="SF1135" /db_xref="GeneID:1024095" CDS 1178710..1180458 /locus_tag="SF1135" /note="Code: R; COG: COG3378" /codon_start=1 /transl_table=11 /product="bacteriophage P4 DNA primase" /protein_id="NP_707046.2" /db_xref="GeneID:1024095" /translation="MKLAPNVKKQPRGIKHKDTEVIIFAGSDAWSHAKQWQEQDGPAS GDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDLVETKKIGQKLAAADIQDA NFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQMADSERAQLLAERFDG VCVHQESEIVHVWRGGVWCPVSTMELSREMVVIYSEHRATFSKRVINNAVEALKVIAE PMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFH KWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGK QNTVSAEMTSLDDAGGRAQVVGSRLIVLADQPKYTGEGTGIKKITGGDPVEINPKYEK RFTAVIRAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIP VIIRRLLANFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMG GGGDSVKYTTRNSLYRVYLAFMAYAGRSKPLNVNDFGKAMKPAAKVYGHEYITRKVKG VTQTNAITTDECDAFL" misc_feature 1179199..1180419 /locus_tag="SF1135" /note="DNA primase, phage- or plasmid-associated [Mobilome: prophages, transposons]; Region: COG3378" /db_xref="CDD:442605" gene 1180747..1181025 /locus_tag="SF1136" /db_xref="GeneID:1024088" CDS 1180747..1181025 /locus_tag="SF1136" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707047.3" /db_xref="GeneID:1024088" /translation="MHTSGKFNKSFKKRRDRTEPKYRALDMTEHALKVAIRTIDRHAG EGYAKAHPELISAFMTTTAANFATLTEREIAEAEQVTTINVKTGEVES" gene 1181562..1181864 /locus_tag="SF1137" /db_xref="GeneID:1024117" CDS 1181562..1181864 /locus_tag="SF1137" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707048.3" /db_xref="GeneID:1024117" /translation="MEHYWLFVTVRHSYYLKQTDTTEENAMPMKFDEILKQRDKYHAD NMETMNITDYRAFLETGALIEKDHHGFVRCALSGEMLAVNPEQTDALIEFLKGIRD" gene 1182117..1183322 /locus_tag="SF1138" /pseudo /db_xref="GeneID:1024103" misc_feature 1182117..1183322 /locus_tag="SF1138" /note="Similar to Escherichia coli O157:H7 EDL933 capsid protein of prophage CP-933C ref: NP_287332.1 (385 aa). BLAST with identity of 98% in 402 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1183362..1183934 /locus_tag="SF1139" /db_xref="GeneID:1024060" CDS 1183362..1183934 /locus_tag="SF1139" /codon_start=1 /transl_table=11 /product="head maturation protease of prophage CP-933C" /protein_id="NP_707049.2" /db_xref="GeneID:1024060" /translation="MGEKIMKSMEIRSSEITTSGAGTLTGYVVRWDKLSELLWGEFYE KFQRGAFTEWLAAGNDVRGLYEHDHSMLLGRTRSGTLKLEEDETGLRFELTPPDTSTG RDVIELVKRGDISGMSFGFRSRKDVWDTTTDPCVRTVLVAELYEITVTSVPAYPDSGV ELARRSLYEQHPEKMPRADNRRWWADLAGV" misc_feature 1183425..1183865 /locus_tag="SF1139" /note="phage prohead protease, HK97 family; Region: proheadase_HK97; TIGR01543" /db_xref="CDD:273682" gene 1183936..1185147 /locus_tag="SF1140" /db_xref="GeneID:1024079" CDS 1183936..1185147 /locus_tag="SF1140" /codon_start=1 /transl_table=11 /product="head portal protein" /protein_id="NP_707050.1" /db_xref="GeneID:1024079" /translation="MWPFRRKKEQRSMTLDEFMALAGTSNTGAGEYVSSGTAESLPAV MNAVTVISDAVATMPCYLYLVRNEKGKEAREWLDSHPVDHILNERPNAWQTPYQFKRM MIRYCLLSGNAYAVIQWGRDGFPAALHPYPPQSVNVEQTGDHNWRYCITDAYTGNIRN YLPWEVLHLRYSTDDGFMGRSPVTICRESLGLGLAQQRHGASVMRDGMMAAGVITSGE WLDGVRGKQALAALERYKGARNAGKTPILEGGMSYQQLGMSNQDAEWLASRRFTIEDI ARMFNVSPIFLQEYSNSTYSNFSEASRAFLTMTMRPWLANFEQQIKNALLVASPVPGI RYQVEFDSADLLRATPGERFATYERGIKSDVMCPNEAREREGLSPRDGGDEFSQAWKQ EVKISEGEKPE" misc_feature 1183936..1185144 /locus_tag="SF1140" /note="Phage portal protein BeeE [Mobilome: prophages, transposons]; Region: BeeE; COG4695" /db_xref="CDD:443730" gene 1185144..1185482 /locus_tag="SF1141" /db_xref="GeneID:1024086" CDS 1185144..1185482 /locus_tag="SF1141" /codon_start=1 /transl_table=11 /product="head-tail adaptor" /protein_id="NP_707051.1" /db_xref="GeneID:1024086" /translation="MNIGRLRDRITIQTLKQTRDITGEILETWEDGHTLWASVNMVSS KEAISSGAELAIGTVRIWIRYRKDINATSRIKVSTGPLAGRVLNIIGQPLPDAARTRL EILCREGAEK" misc_feature 1185144..1185479 /locus_tag="SF1141" /note="Phage head-tail adaptor [Mobilome: prophages, transposons]; Region: COG5614" /db_xref="CDD:444345" gene 1185479..1185775 /locus_tag="SF1142" /db_xref="GeneID:1024105" CDS 1185479..1185775 /locus_tag="SF1142" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707052.1" /db_xref="GeneID:1024105" /translation="MTEELITLEEVKLHCRIDGDDEDQLISGYIAASLEACQIHIGRR FDDGLAFTPAIKIGCMMFIAHLYENRQIVADNAKTRVPMTIGALWTAYRDVGGY" misc_feature 1185497..1185769 /locus_tag="SF1142" /note="uncharacterized phage protein (possible DNA packaging); Region: put_DNA_pack; TIGR01560" /db_xref="CDD:130623" misc_feature order(1185506..1185508,1185515..1185520,1185524..1185526, 1185548..1185553,1185560..1185565,1185569..1185574, 1185581..1185586,1185593..1185595,1185632..1185640, 1185647..1185649,1185656..1185664,1185668..1185676, 1185680..1185688,1185716..1185733,1185737..1185742, 1185749..1185754) /locus_tag="SF1142" /note="oligomerization interface [polypeptide binding]; other site" /db_xref="CDD:153446" gene 1185775..1186215 /locus_tag="SF1143" /db_xref="GeneID:1024085" CDS 1185775..1186215 /locus_tag="SF1143" /codon_start=1 /transl_table=11 /product="HNH endonuclease" /protein_id="NP_707053.3" /db_xref="GeneID:1024085" /translation="MPWQPLRRCTEPGCNRRVKSGKCEEHRRAAWRAEDARRGHRRAR GYSRQWDKYRAMYLSKNPLCVRCLEKGIYTPAVVVDHIIPINGGDDVLFWPEWNHQPL CQACHNQKTKWLDPATKSKRAAGGFREEEERAANRNNWMYDADE" misc_feature 1185925..1186107 /locus_tag="SF1143" /note="HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cd00085" /db_xref="CDD:238038" misc_feature order(1186006..1186008,1186012..1186020,1186024..1186026, 1186066..1186071,1186081..1186086,1186093..1186095, 1186105..1186107) /locus_tag="SF1143" /note="active site" /db_xref="CDD:238038" gene 1186199..1186381 /locus_tag="SF1144" /db_xref="GeneID:1024106" CDS 1186199..1186381 /locus_tag="SF1144" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707054.1" /db_xref="GeneID:1024106" /translation="MTLMNEREQNRLIRGLIRQRDAWKTQETGHKDKASGRAERITAK RLTDRDREVMECFRNR" gene 1186452..1186763 /locus_tag="SF1145" /db_xref="GeneID:1024093" CDS 1186452..1186763 /locus_tag="SF1145" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707055.1" /db_xref="GeneID:1024093" /translation="MKQWREKSRQLAERGDLTPADWSNLELYCVNYSIYRKAVADLAA RGFSIVNSQGGESRNPALSAKSDAERVMIKMASLLGFDPISRRKNPPETEEEDELDRL E" misc_feature 1186455..1186715 /locus_tag="SF1145" /note="Phage terminase, small subunit; Region: Terminase_4; pfam05119" /db_xref="CDD:461553" gene 1186930..1188408 /locus_tag="SF1146" /db_xref="GeneID:1024125" CDS 1186930..1188408 /locus_tag="SF1146" /codon_start=1 /transl_table=11 /product="terminase of prophage CP-933C" /protein_id="NP_707056.2" /db_xref="GeneID:1024125" /translation="MRGRPIELEPWQQFAFACILGFKVKATGRRKYTSAFIEVPRKNA KSTTAAILANWFLIMENGQQDIYTAAVSRDQARIVFDNARQMCLLSRPLRRRVNIQAH KVIHPKSNSLLKPLAAKAATIEGTNPSLSIVDEYHLHPDNGVYSALELGMGARPEGLL FAITTSGSNVVSACKQHYDYCCQILDGEEVNDSIFVLIYELDDENEVDDPAMWIKANP NIDVSVDREKLASTIQKARGIPSQWVEMMTKRFNIWCQGTTPWMGNGAWAECAGTFTE EDLHGQECYAGLDLSSTSDISSVCYAFPVGKTIMLISRHYLPEFQLQNPANKNRAVYR QWAKAGWIRTTPGDCIDYDRIRDDIMQDAEKFNIRLVGFDTWNATHLRTQLQGAGFEV EPFPQTYLRFSPAAKSFEVFVNRRVIVHRGDPVLSWSMSNVVMQSDANANIKPNKKKS PNKIDPSVAALMAFGTFQAEHEDFAFDISDSHRQKLEEFSGV" misc_feature 1186930..1188351 /locus_tag="SF1146" /note="Phage terminase-like protein, large subunit, contains N-terminal HTH domain [Mobilome: prophages, transposons]; Region: YmfN; COG4626" /db_xref="CDD:443665" gene 1188422..1188703 /locus_tag="SF1147" /db_xref="GeneID:1024078" CDS 1188422..1188703 /locus_tag="SF1147" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707057.1" /db_xref="GeneID:1024078" /translation="MTEAEILRLIRRVSGISQQADEQTTQPDSVTAENYARVVAEVMR RDGIQLNDADMRDIRIRVLEMLAYNRRVELYREKEKITYHWKKPERLRR" gene complement(1189500..1190960) /gene="phoQ" /locus_tag="SF1148" /db_xref="GeneID:1024096" CDS complement(1189500..1190960) /gene="phoQ" /locus_tag="SF1148" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="sensor protein PhoQ" /protein_id="NP_707058.1" /db_xref="GeneID:1024096" /translation="MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSF DKTTFRLLRGESNLFYTLAQWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDV PWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVA VNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSL RPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLT HSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMRGGTLLS RELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACK YCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAR EITEQYEGKIVAGESMLGGARMEVIFGRQHSAPKDE" misc_feature complement(1189506..1190954) /gene="phoQ" /locus_tag="SF1148" /note="two-component system sensor histidine kinase PhoQ; Region: PRK10815" /db_xref="CDD:182754" gene complement(1190960..1191631) /gene="phoP" /locus_tag="SF1149" /db_xref="GeneID:1024087" CDS complement(1190960..1191631) /gene="phoP" /locus_tag="SF1149" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator PhoP" /protein_id="NP_707059.1" /db_xref="GeneID:1024087" /translation="MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHL PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKP FHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMET LIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGY LFELR" misc_feature complement(1190963..1191631) /gene="phoP" /locus_tag="SF1149" /note="two-component system response regulator PhoP; Region: PRK10816" /db_xref="CDD:182755" gene complement(1191800..1193170) /gene="purB" /locus_tag="SF1150" /db_xref="GeneID:1025389" CDS complement(1191800..1193170) /gene="purB" /locus_tag="SF1150" /note="Code: F; COG: COG0015" /codon_start=1 /transl_table=11 /product="adenylosuccinate lyase" /protein_id="NP_707060.1" /db_xref="GeneID:1025389" /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL QKLAAHAAIKEVPAFAADAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKE KVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQ YRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQHRQLNQVEILGKINGAVGNYNAHI AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVW GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEENRDHLLDELDHNWEVLAEPIQTV MRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAIT MVDELK" misc_feature complement(1191803..1193170) /gene="purB" /locus_tag="SF1150" /note="adenylosuccinate lyase; Provisional; Region: PRK09285" /db_xref="CDD:236452" gene complement(1193174..1193815) /gene="ycfC" /locus_tag="SF1151" /db_xref="GeneID:1024144" CDS complement(1193174..1193815) /gene="ycfC" /locus_tag="SF1151" /note="Code: R; COG: COG2915" /codon_start=1 /transl_table=11 /product="lysogenization regulator" /protein_id="NP_707061.2" /db_xref="GeneID:1024144" /translation="MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSII DMNPSSTLAVFGGSEANLRVGLETLLGVLNASSCQGLNAELTRYTLSLMVLERKLSSA KGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQS PQVQAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL" misc_feature complement(1193189..1193815) /gene="ycfC" /locus_tag="SF1151" /note="lysogenization regulator HflD; Region: PRK00218" /db_xref="CDD:234690" gene complement(1193851..1195002) /gene="ycfB" /locus_tag="SF1152" /db_xref="GeneID:1024072" CDS complement(1193851..1195002) /gene="ycfB" /locus_tag="SF1152" /note="Code: J; COG: COG0482" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707062.3" /db_xref="GeneID:1024072" /translation="MIEYAALKFNVVSDPMSETAKKVIVGMSGGVDSSVSAWLLQQQG YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFL AEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGL DSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGE RKFREFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYV VDKDVENNILVVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPC TVKALDDDRIKVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPV" misc_feature complement(1193863..1194942) /gene="ycfB" /locus_tag="SF1152" /note="tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]; Region: MnmA; COG0482" /db_xref="CDD:440250" gene complement(1195011..1195472) /locus_tag="SF1153" /db_xref="GeneID:1026275" CDS complement(1195011..1195472) /locus_tag="SF1153" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="phosphohydrolase" /protein_id="NP_707063.1" /db_xref="GeneID:1026275" /translation="MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETL VEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDID CCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI" misc_feature complement(1195050..1195457) /locus_tag="SF1153" /note="uncharacterized NUDIX hydrolase subfamily; Region: NUDIX_Hydrolase; cd03675" /db_xref="CDD:467543" gene complement(1195482..1196105) /gene="ymfC" /locus_tag="SF1154" /db_xref="GeneID:1024083" CDS complement(1195482..1196105) /gene="ymfC" /locus_tag="SF1154" /note="Code: J; COG: COG1187" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridine(2457) synthase" /protein_id="NP_707064.1" /db_xref="GeneID:1024083" /translation="MQKTSFRNHQVKRFSSQRSTRRKHENQPTRVILFNKPYDVLPQF TDETGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQ VEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKI TLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREVTD" misc_feature complement(1195485..1196105) /gene="ymfC" /locus_tag="SF1154" /note="23S rRNA pseudouridine(2457) synthase RluE; Region: PRK11394" /db_xref="CDD:183115" gene 1196307..1197557 /gene="icdA" /locus_tag="SF1155" /db_xref="GeneID:1024104" CDS 1196307..1197557 /gene="icdA" /locus_tag="SF1155" /note="Code: C; COG: COG0538" /codon_start=1 /transl_table=11 /product="isocitrate dehydrogenase" /protein_id="NP_707065.1" /db_xref="GeneID:1024104" /translation="MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPA MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGP LTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI ANDRDSVTLVHKGNIMKFTEGAFKDWGYQLAREEFGGELIDGGPWLKVKNPNTGKEIV IKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYD FERLMEGAKLLKCSEFGDAIIKNM" misc_feature 1196328..1197554 /gene="icdA" /locus_tag="SF1155" /note="isocitrate dehydrogenase; Reviewed; Region: PRK07006" /db_xref="CDD:180792" mobile_element complement(1197649..1197891) /note="partial" /mobile_element_type="insertion sequence:IS1" mobile_element complement(1197892..1198403) /note="partial" /mobile_element_type="insertion sequence:IS1" gene 1198442..1199965 /locus_tag="SF1156" /db_xref="GeneID:1024094" CDS 1198442..1199965 /locus_tag="SF1156" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707066.2" /db_xref="GeneID:1024094" /translation="MRNTLIPILVAICLFITGVAILNIQLWYSAKAEYLAGARYAANN INHILEEASQATQTAVNIAGKECDLEEQYQLGTEAALKPHLRTIIILKQGIVWCTSLP GNRVLLSRIPVVPDSNLLLAPAIDTVNRLPILLYQSQFADTRILVTISDQHIRGALNV PLKGVRYVLRVADDIIGPTADVMTLNGHYPYTEKVHSTKYHFTIIFNPPPLFSFYRLI DKGFGILIFILLIASAAAFLLDRYFNKSATPEEILRRAINNGEIVPFYQPVVNGREGT LRGVEVLARWKQPHGGYISPAAFIPLAEKSGLIVPLTQSLMNQVARQMNAIASKLPEG FHIGINFSASHIISPTFVDECLNFRDSFTRRDLNLVLEVTEREPLNVDESLVQRLNIL HENGFVIALDDFGTGYSGLSYLHDLHIDYIKIDHSFVGRVNADPESTRILDCVLDLAR KLSISIVAEGVETKEQLGYLNQNNITFQQGYYFYKPVTYIDLVKIILSKPKVKVVVE" misc_feature 1198451..1199902 /locus_tag="SF1156" /note="Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal transduction mechanisms]; Region: YjcC; COG4943" /db_xref="CDD:443970" gene 1200061..1200297 /locus_tag="SF1156a" /db_xref="GeneID:16608316" CDS 1200061..1200297 /locus_tag="SF1156a" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_008439239.1" /db_xref="GeneID:16608316" /translation="MFESFDRIAISSMNNSNNLDYFTLYIIFSIAFMLITLLVILIAK PSTGLGEVLVTINLLNALVWLAINLVNRFKRKTR" misc_feature 1200097..1200288 /locus_tag="SF1156a" /note="cell division-associated protein YmgF; Region: YmgF; NF041587" /db_xref="CDD:469472" gene 1200716..1200925 /locus_tag="SF1156b" /db_xref="GeneID:16608317" CDS 1200716..1200925 /locus_tag="SF1156b" /codon_start=1 /transl_table=11 /product="ATPase" /protein_id="YP_008439240.1" /db_xref="GeneID:16608317" /translation="MKLKKLPGFSLGLIALAVGNAYAEQFIQHDEYKHAVAIKDGKVK DIDNALVITTGNGSYGYPLQERVVS" gene 1201042..1203363 /locus_tag="SF1157" /db_xref="GeneID:1024084" CDS 1201042..1203363 /locus_tag="SF1157" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707067.1" /db_xref="GeneID:1024084" /translation="MQGKNTIVTTGDYSIGLLSQTSGNLNTDTIIRVNSDGSVTPSFS DGDDTFIVTAGNHAVGVLACASPGSACACVSSLDEESTADTGSNENNAIAKLDMAKGE ITTHGTESYAAYANGTVVKAGDTLDYTNASVTLTDVDITTHGDNAHAIAARQGTVSFN QGEIYTTGPDAAIAKIYNGGTVTLKNTSAVAHQGSGIVLESSINGQEATVDILSGSSL RSANEILYHKDETSNVTITDSEVSSAADVFINNIKGHLTVDATNSKITGSANISTDDN THTYLSLSDNSTWDIKADSTVSNLTVDNSTVYISRADGRDVEPTRLTITENYVGNNGV LHLRTELDDDNSATDKVVINGNTSGTTRVKVTNAGGSGAYTLNGIEIISVEGESNGEF IKDSRIFAGAYEYSLTRGNTEATNKNWYLTNFQATSGGETNSGGSSAPTVAPTPVLRP EAGSYVANLAAANTLFVMRLNDRAGEMRYIDPVTEQERSSRLWLRQIGGHNAWRDSNG QLRTTSHRYVSQLGGDLLTGGFTDSDSWRLGVMAGYARDYNLTHSSVSDYRSKGSVRG YSAGLYATWFADDISKKGAYIDSWAQYSWFKNSVKGDELAYESYSAKGATVSLEAGYG FALNKSFGLEAAKYTWIFQPQAQAIWMGVDHNAHTEANGSRIENDANNNIQTRLGFRT FIRTQEKNSGPHGDDFEPFVEMNWIHNSKDFAVSMNGVKVEQDGVSNLGEIKLGVNGN LNPAASVWGNVGVQLGDNGYNDTAVMVGLKYKF" misc_feature <1201060..1203360 /locus_tag="SF1157" /note="intestinal colonization autotransporter adhesin MisL; Region: PRK15313" /db_xref="CDD:237940" gene complement(1203420..1203755) /locus_tag="SF1158" /db_xref="GeneID:1024121" CDS complement(1203420..1203755) /locus_tag="SF1158" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707068.1" /db_xref="GeneID:1024121" /translation="MMMKKFALLAGLFVFAPMTWAQDYNIKNGLPSETYITCAEANEM AKTDSAQVAEIVAVMGNASVASRDLKIEQSPELSAKVVEKLNQVCAKDPQMLLITAID DTMRAIGKK" misc_feature complement(1203429..1203674) /locus_tag="SF1158" /note="YmgD protein; Region: YmgD; pfam16456" /db_xref="CDD:435349" gene complement(1203759..1204043) /locus_tag="SF1159" /db_xref="GeneID:1023395" CDS complement(1203759..1204043) /locus_tag="SF1159" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707069.2" /db_xref="GeneID:1023395" /translation="MADMNRTTKGALLGAGVGLLTGNGVNGVLKGAAVGAGVGAVTEK GRDGKNARKGAKVGAAVGAVTGVLTGNGLEGAIKGAVIGGTGGAILGKMK" gene 1204613..1205023 /locus_tag="SF1160" /db_xref="GeneID:1024138" CDS 1204613..1205023 /locus_tag="SF1160" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439241.1" /db_xref="GeneID:1024138" /translation="MNPLVWCLRADVAAELRSLRRYYHLSNGMESKSVDTRSIYRELG ATLSYNMRLGNGMEIEPCLKAAVRKEFVDDNRVRVNSDGNFVNDLSGRRGIYQAGIKA SFSSTLSGHFGVGYSHGAGVESPWNAVAGVNWSF" misc_feature <1204679..1205020 /locus_tag="SF1160" /note="outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414" /db_xref="CDD:273608" misc_feature 1204811..1205023 /locus_tag="SF1160" /note="Similar to Escherichia coli O157:H7 ATP-binding component of a transport system ref: NP_311542.1 (1571 aa). BLAST with identity of 96% in 136 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." gene complement(1205395..1205661) /gene="minE" /locus_tag="SF1161" /db_xref="GeneID:1024127" CDS complement(1205395..1205661) /gene="minE" /locus_tag="SF1161" /note="Code: D; COG: COG0851" /codon_start=1 /transl_table=11 /product="cell division topological specificity factor MinE" /protein_id="NP_707070.1" /db_xref="GeneID:1024127" /translation="MALLDFFLSRKKNTANIAKERLQIIVAERRRSDAEPHYLPQLRK DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEELK" misc_feature complement(1205404..1205661) /gene="minE" /locus_tag="SF1161" /note="cell division topological specificity factor MinE; Reviewed; Region: minE; PRK00296" /db_xref="CDD:234718" gene complement(1205665..1206477) /gene="minD" /locus_tag="SF1162" /db_xref="GeneID:1024099" CDS complement(1205665..1206477) /gene="minD" /locus_tag="SF1162" /note="Code: D; COG: COG2894" /codon_start=1 /transl_table=11 /product="cell division inhibitor MinD" /protein_id="NP_707071.1" /db_xref="GeneID:1024099" /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLYILPASQTRDKDALTREGV AKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL ASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSVL RASNQGEPVILDINADAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFGG" misc_feature complement(1205668..1206477) /gene="minD" /locus_tag="SF1162" /note="septum site-determining protein MinD; Region: PRK10818" /db_xref="CDD:182756" gene complement(1206501..1207196) /gene="minC" /locus_tag="SF1163" /db_xref="GeneID:1024130" CDS complement(1206501..1207196) /gene="minC" /locus_tag="SF1163" /note="Code: D; COG: COG0850" /codon_start=1 /transl_table=11 /product="septum formation inhibitor" /protein_id="NP_707072.2" /db_xref="GeneID:1024130" /translation="MSNTPIELKGSSFTLSVVHLHEAEPKVIHQALKDKIAQAPTFLK HAPVVLNVSALEDPVNWSAMHKAVSATGLRVIGVSGCKDAQLKAEIEKMGLPILTEGK EKAPRPAPAPQAPAQNTMPVTKTRLIDTPVRSGQRIYAPQCDLIVTSHVSAGAELIAD GNIHVYGMMRGRALAGASGDRETQIFCTNLMAELVSIAGEYWLSDQIPAEFYGKAARL QLVENALTVQPLN" misc_feature complement(1206504..1207196) /gene="minC" /locus_tag="SF1163" /note="Septum site-determining protein MinC [Cell cycle control, cell division, chromosome partitioning]; Region: MinC; COG0850" /db_xref="CDD:440611" mobile_element complement(1207909..1209239) /mobile_element_type="insertion sequence:IS2" gene complement(1207920..1208825) /locus_tag="SF1164" /db_xref="GeneID:1024119" CDS complement(1207920..1208825) /locus_tag="SF1164" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_707073.1" /db_xref="GeneID:1024119" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(1207923..1208825) /locus_tag="SF1164" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(1208783..1209193) /locus_tag="SF1165" /db_xref="GeneID:1024116" CDS complement(1208783..1209193) /locus_tag="SF1165" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_707074.3" /db_xref="GeneID:1024116" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(1208786..1209148) /locus_tag="SF1165" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" mobile_element 1209810..1211067 /mobile_element_type="insertion sequence:IS3" gene 1209866..1210174 /locus_tag="SF1166" /db_xref="GeneID:1024108" CDS 1209866..1210174 /locus_tag="SF1166" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence IS3 transposase InsE" /protein_id="NP_707075.1" /db_xref="GeneID:1024108" /translation="MTYMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSL YESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK " misc_feature 1209899..1210156 /locus_tag="SF1166" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1210171..1211025 /locus_tag="SF1167" /db_xref="GeneID:1024131" CDS 1210171..1211025 /locus_tag="SF1167" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence IS3A transposase InsF" /protein_id="NP_707076.1" /db_xref="GeneID:1024131" /translation="MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQ FRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKF SPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVI GWSMSPRMTAQLACDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSM SAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGG LSPEQFEN" misc_feature <1210171..1211019 /locus_tag="SF1167" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 1211383..1211709 /gene="ycgL" /locus_tag="SF1168" /db_xref="GeneID:1024128" CDS 1211383..1211709 /gene="ycgL" /locus_tag="SF1168" /note="Code: S; COG: COG3100" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707077.1" /db_xref="GeneID:1024128" /translation="MPKPGILKSKSMFCVIYRSSKRDQTYLYVEKKDDFSRVPEELMK GFGQPQLAMILPLDGRKKLVNADIEKVKLALTEQGYYLQLPPPPEDLLKQHLSVMGQK TDDTNK" misc_feature 1211416..1211670 /gene="ycgL" /locus_tag="SF1168" /note="Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown]; Region: YcgL; COG3100" /db_xref="CDD:442334" gene 1211781..1212440 /locus_tag="SF1169" /db_xref="GeneID:1024134" CDS 1211781..1212440 /locus_tag="SF1169" /note="Code: Q; COG: COG0179" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707078.1" /db_xref="GeneID:1024134" /translation="MYQHHNWQGALLDYPVSKVVCVGSNYAKHIKEMGSAVPEEPVLF IKPETALCDLRQPLAIPSDFGSVHHEVELAVLIGATLRQATEEHVRKAIAGYGVALDL TLRDVQGKMKKAGQPWEKAKAFDNSCPLSGFIPAAEFTGDPQNTTLGLSVNGEKRQQG TTADMIHKIVPLIAYMSKFFTLKAGDVVLTGTPDGVGPLQSGDELTVTFDGHSLTTRV L" misc_feature 1211781..1212437 /locus_tag="SF1169" /note="fumarylacetoacetate hydrolase family protein; Region: PRK10691" /db_xref="CDD:182650" gene 1212517..1212978 /gene="ycgN" /locus_tag="SF1170" /db_xref="GeneID:1025114" CDS 1212517..1212978 /gene="ycgN" /locus_tag="SF1170" /note="Code: S; COG: COG2983" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707079.3" /db_xref="GeneID:1025114" /translation="MAEHLMSDVPFWQSKTLDEMSDAEWESLCDGCGQCCLHKLMDED TDEIYFTNVACRQLNIKTCQCRNYERRFEFEPDCIKLTRENLPTFEWLPMTCAYRLLA EGKDLPAWHPLLTGSKAAMHGERISVRHIAVKESEVIDWQDHILNKPDWAQ" misc_feature 1212532..1212972 /gene="ycgN" /locus_tag="SF1170" /note="YcgN family cysteine cluster protein; Region: PRK05170" /db_xref="CDD:235356" gene complement(1213185..1214091) /gene="hlyE" /locus_tag="SF1171" /pseudo /db_xref="GeneID:1024120" misc_feature complement(1213185..1214091) /gene="hlyE" /locus_tag="SF1171" /note="Similar to Escherichia coli K12 hemolysin E gi: 1787430 (306 aa). BLAST with identity of 98% in 302 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1214458..1214877 /gene="umuD" /locus_tag="SF1172" /db_xref="GeneID:1024107" CDS 1214458..1214877 /gene="umuD" /locus_tag="SF1172" /note="Code: KT; COG: COG1974" /codon_start=1 /transl_table=11 /product="DNA polymerase V subunit UmuD" /protein_id="NP_707080.1" /db_xref="GeneID:1024107" /translation="MLFIKPADLREIVTFPLFSDLVQCGFPSPAADYVEQRIDLNQLL IQHPSATYFVKASGDSMIDGGISDGDLLIVDSAITASHGDIVIAAVDGEFTVKKLQLR PTVQLIPMNSAYSPITISSEDTLDVFGVVIHVVKAMR" misc_feature 1214458..1214874 /gene="umuD" /locus_tag="SF1172" /note="translesion error-prone DNA polymerase V autoproteolytic subunit; Region: PRK10276" /db_xref="CDD:182350" misc_feature order(1214635..1214637,1214746..1214748) /gene="umuD" /locus_tag="SF1172" /note="Catalytic site [active]" /db_xref="CDD:119397" gene 1214877..1216145 /gene="umuC" /locus_tag="SF1173" /db_xref="GeneID:1024115" CDS 1214877..1216145 /gene="umuC" /locus_tag="SF1173" /note="Code: L; COG: COG0389" /codon_start=1 /transl_table=11 /product="DNA polymerase V subunit UmuC" /protein_id="NP_707081.1" /db_xref="GeneID:1024115" /translation="MFALCDVNAFYASCETVFRPDLWGKPVVVLSNNDGCVIARNAEA KALGVKMGDPWFKQKDLFRRCGVVCFSSNYELYADMSNRVMSTLEELSPRVEIYSIDE AFCDLTGVRNCRDLTDFGREIRATVLQRTHLTVGVGIAQTKTLAKLANHAAKKWQRQT GGVVDLSNLERQRKLMSALPVDDVWGIGRRISKKLDAMGIKTVLDLADTDIRFIRKHF NVMLERTVRELRGEPCLQLEEFAPTKQEIICSRSFGERITDYTSMRQAICSYAARAAE KLRSEHQYCRFISTFIKTSPFALNEPYYGNSASVKLLTPTQDSRDIINAATRSLDAIW QAGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRPGSEQLMAVMDTLNAKEGRGTLYFA GQGIQQQWQMKRAMLSPRYTTRSSDLLRVK" misc_feature 1214877..1216142 /gene="umuC" /locus_tag="SF1173" /note="translesion error-prone DNA polymerase V subunit UmuC; Region: umuC; PRK03609" /db_xref="CDD:179607" misc_feature order(1214892..1214897,1214904..1214909,1215000..1215002, 1215009..1215011,1215177..1215182,1215336..1215338) /gene="umuC" /locus_tag="SF1173" /note="active site" /db_xref="CDD:176454" misc_feature order(1215171..1215173,1215180..1215182,1215429..1215449, 1215534..1215536,1215609..1215626,1215705..1215707, 1215762..1215776,1215780..1215782) /gene="umuC" /locus_tag="SF1173" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176454" gene complement(1216191..1216721) /gene="dsbB" /locus_tag="SF1174" /db_xref="GeneID:1024123" CDS complement(1216191..1216721) /gene="dsbB" /locus_tag="SF1174" /note="Code: O; COG: COG1495" /codon_start=1 /transl_table=11 /product="disulfide bond formation protein B" /protein_id="NP_707082.2" /db_xref="GeneID:1024123" /translation="MLRFLNQCSQGRGAWLLMAFTALALELTALWFQHVMLLKPCVLC IYERCALFGVLGAALIGAIAPKTPLRYVAMVIWLYSAFRGVQLTYEHTMLQLYPSPFA TCDFMVRFPEWLPLDKWVPQVFVASGDCAERQWDFLGMEMPQWLLGIFIAYLIVAVLV VISQPFKAKKRDLFGR" misc_feature complement(1216197..1216721) /gene="dsbB" /locus_tag="SF1174" /note="disulfide bond formation protein DsbB; Region: PRK01749" /db_xref="CDD:234979" gene complement(1216867..1218408) /gene="nhaB" /locus_tag="SF1175" /db_xref="GeneID:1024112" CDS complement(1216867..1218408) /gene="nhaB" /locus_tag="SF1175" /note="Code: P; COG: COG3067" /codon_start=1 /transl_table=11 /product="sodium/proton antiporter" /protein_id="NP_707083.2" /db_xref="GeneID:1024112" /translation="MEISWGRALWRNFLGQSPDWYKLALIIFLIVNPLIFLISPFVAG WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVFIGMTSAEHVREEVAANLEVLLLLMFM VAGIYFMKQLLLFIFTRLLLSIRSKMLLSLSFCVAAAFLSAFLDALTVVAVVISVAVG FYGIYHRVASSRTEDTDLQDDSHIDKHYNVVLEQFRGFLRSLMMHAGVGTALGGVMTM VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLICGLLTCLLVEKLRWFGYGETLPEKV REVLQQFDDQSRHQRTRQDKIRLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATSL TGVTDEHAIGKAFTESLPFTALLTVFFSVVAVIIDQQLFSPIIQFVLQASEHAQLSLF YIFNGLLSSISDNVFVGTIYINEAKAAMESGAITLKQYELLAVAINTGTNLPSVATPN GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTLVLTLVGLLCVEFTLAPVTEWFMQMG WIATL" misc_feature complement(1216879..1218408) /gene="nhaB" /locus_tag="SF1175" /note="sodium/proton antiporter NhaB; Region: nhaB; PRK09547" /db_xref="CDD:181942" misc_feature complement(order(1217050..1217067,1217080..1217115, 1217128..1217133,1217200..1217247,1217317..1217373, 1217416..1217460,1217482..1217520,1217614..1217622, 1217641..1217676,1217740..1217811,1217890..1217928, 1217956..1217970,1217974..1218018,1218085..1218138, 1218181..1218204)) /gene="nhaB" /locus_tag="SF1175" /note="transmembrane helices; other site" /db_xref="CDD:238344" gene 1218629..1219348 /gene="fadR" /locus_tag="SF1176" /db_xref="GeneID:1024109" CDS 1218629..1219348 /gene="fadR" /locus_tag="SF1176" /note="Code: K; COG: COG2186" /codon_start=1 /transl_table=11 /product="fatty acid metabolism regulator" /protein_id="NP_707084.2" /db_xref="GeneID:1024109" /translation="MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVT RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL SVRTNISTIFIRTAFRQHPDKAQEVLATANEVADHADAFAELDYNIFRGLAFASGNPI YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSALCSEGAHDQVYETVRRYGHE SGEIWHRMQKNLPGDLAIQGR" misc_feature 1218629..1219345 /gene="fadR" /locus_tag="SF1176" /note="fatty acid metabolism transcriptional regulator FadR; Region: PRK04984" /db_xref="CDD:179909" gene complement(1219400..1220932) /gene="ycgB" /locus_tag="SF1177" /db_xref="GeneID:1024118" CDS complement(1219400..1220932) /gene="ycgB" /locus_tag="SF1177" /note="Code: S; COG: COG2719" /codon_start=1 /transl_table=11 /product="SpoVR family protein" /protein_id="NP_707085.1" /db_xref="GeneID:1024118" /translation="MATIDSMNKDTTRLSDGPDWTFDLLDVYLAEIDRVAKLYRLDTY PHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNP CIAYLMEENTITMQALVMAHACYGHNSFFKNNCLFRSWTDASSIVDYLIFARKYITEC EERYGVDEVERLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWR TLPKREEEKTVAEARRYPSEPQENLLYFMEKNAPLLESWQREILRIVRKVSQYFYPQK QTQVMNEGCATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINP YALGFAMFQDIKRICQSPTEEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPK VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRNRLSSQYKLSNLEPNIQIWNVDLR GDRSLTLRYIPHNRAPLDRGRKEVLKHVHRLWGFDVMLEQQNEDGSIELLERCPPRMG NL" misc_feature complement(1219415..1220908) /gene="ycgB" /locus_tag="SF1177" /note="SpoVR family protein; Provisional; Region: PRK11767" /db_xref="CDD:236973" gene 1221262..1222560 /gene="dadA" /locus_tag="SF1178" /db_xref="GeneID:1024136" CDS 1221262..1222560 /gene="dadA" /locus_tag="SF1178" /note="Code: E; COG: COG0665" /codon_start=1 /transl_table=11 /product="D-amino acid dehydrogenase small subunit" /protein_id="NP_707086.2" /db_xref="GeneID:1024136" /translation="MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANA GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYM ENKGRMVRLAEYSRDCLKALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDA GVPYQLLESSRLAEVDPALAEVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKF RFNTPVDQLLCDGEQIYGVKFGDEVIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYS LTIPIAQEDGAPVSTILDETYKIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMV VRDLYPRGGHVEQATFWTGLRPMTPDGTPVVGSTRFKNLWLNTGHGTLGWTMACGSGQ LLSDLLSGRTPAIPYEDLSVARYSRGFTPSRPGHLHGAHS" misc_feature 1221262..1222506 /gene="dadA" /locus_tag="SF1178" /note="D-amino acid dehydrogenase; Region: PRK00711" /db_xref="CDD:234819" gene 1222570..1223640 /gene="dadX" /locus_tag="SF1179" /db_xref="GeneID:1024156" CDS 1222570..1223640 /gene="dadX" /locus_tag="SF1179" /note="Code: M; COG: COG0787" /codon_start=1 /transl_table=11 /product="alanine racemase" /protein_id="NP_707087.1" /db_xref="GeneID:1024156" /translation="MTRPIQASLDLQALKQNLSIVRQAAPHARVWSVVKANAYGHGIE RIWSALGATDGFALLNLEEAITLRERGWKGPILMLEGFFHAQDLEIYDQHRLTTCVHS NWQLKALQNARLKAPLDIYLKVNSGMNRLGFQSDRVLTVWQQLRAMANVGEMTLMSHF AEAEHPDGISGAMARIEQAAEGLECRRSLSNSAATLWHPEAHFDWVRPGIILYGASPS GQWRDIANTGLRPVMTLSSEIIGVQTLKAGERVGYGGRYTARDEQRIGIVAAGYADGY PRHAPTGAPVLVDGVRTMTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKIDDVAA AAGTVGYELMCALALRVPVVTV" misc_feature 1222573..1223637 /gene="dadX" /locus_tag="SF1179" /note="catabolic alanine racemase; Region: dadX; PRK03646" /db_xref="CDD:179622" misc_feature order(1222666..1222668,1222672..1222674,1222684..1222686, 1222804..1222806,1222936..1222938,1222957..1222959, 1223038..1223040,1223044..1223046,1223140..1223148, 1223188..1223199,1223590..1223592) /gene="dadX" /locus_tag="SF1179" /note="active site" /db_xref="CDD:143500" misc_feature order(1222666..1222668,1222672..1222674,1222684..1222686, 1222804..1222806,1223044..1223046,1223140..1223145, 1223188..1223190,1223194..1223199,1223590..1223592) /gene="dadX" /locus_tag="SF1179" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature order(1222672..1222674,1222684..1222686,1222957..1222959, 1223044..1223046,1223590..1223592) /gene="dadX" /locus_tag="SF1179" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature order(1222672..1222674,1223326..1223328) /gene="dadX" /locus_tag="SF1179" /note="catalytic residues [active]" /db_xref="CDD:143500" misc_feature order(1223287..1223289,1223296..1223298,1223314..1223319, 1223323..1223331,1223368..1223370,1223383..1223385, 1223401..1223403,1223467..1223469,1223473..1223475, 1223584..1223586,1223590..1223595,1223608..1223610, 1223617..1223619) /gene="dadX" /locus_tag="SF1179" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143500" gene complement(1223808..1225106) /locus_tag="SF1180" /pseudogene="unknown" /db_xref="GeneID:1024124" gene complement(1225833..1227443) /locus_tag="SF1181" /db_xref="GeneID:1026283" CDS complement(1225833..1227443) /locus_tag="SF1181" /note="Code: P; COG: COG0025" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707089.4" /db_xref="GeneID:1026283" /translation="MLAGVDGVGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFR VALGPALSLATLGVLITSGLTGMMAAWLFNLDLIEGLLIGAIVGSTDAAAVFSLLGGK GLNERVGSTLEIESGSNDPMAVFLTITLIAMIQQHESSVSWMFVVDILQQFGLGIVIG LGGGYLLLQMINRIALPAGLYPLLALSGGILIFALTTALEGSGILAVYLCGFLLGNRP IRNRYGILQNFDGLAWLAQIAMFLVLGLLVNPSDLLPIAIPALILSAWMIFFARPLSV FAGLLPFRGFNLRERVFISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSL LLQGTSLSWAAKKAKVVVPPVGRPVSRVGLDIHPENLWEQFVYQLSADKWCVGAALRD LHMPKETRIAALFRDNQLLHPTGSTRLREGDVLCVIGRERDLPALGKLFSQSPPVALD QRFFGDFILEASAKYADVALIYGLEDGREYRDKQQTLGEIVQQLLGAAPVVGDQVEFA GMIWTVAEKEDNEVLKIGVRVAEEEAES" misc_feature complement(1225857..1227443) /locus_tag="SF1181" /note="potassium/proton antiporter; Region: PRK05326" /db_xref="CDD:235410" gene complement(1227664..1228560) /gene="ldcA" /locus_tag="SF1182" /db_xref="GeneID:1024153" CDS complement(1227664..1228560) /gene="ldcA" /locus_tag="SF1182" /note="Code: S; COG: COG1619" /codon_start=1 /transl_table=11 /product="L,D-carboxypeptidase A" /protein_id="NP_707090.1" /db_xref="GeneID:1024153" /translation="MPHRGYSIKQHAALRGIQRLTDAGHQVNNVEVIARRCERFAGTE TERLEDLNSLARLTTPNTIVLAVRGGYGASRLLADIDWQALVARQQHDPLLICGHSDF TAIQCGLLAQGNVITFSGPMLVANFGADELNAFTEHHFWLALRNETFTIEWQGEGPTC QTEGTLWGGNLAMLISLIGTPWMPKIENGILVLEDINVHPFRVERMLLQLYHAGILPR QKAIILGSFSGSTPNDYDAGYNLESVYAFLRSRLSIPLITGLDFGHEQRTVTLPLGAH AILNNTREGAQLTISGHPVLKM" misc_feature complement(1227667..1228548) /gene="ldcA" /locus_tag="SF1182" /note="L,D-carboxypeptidase A; Provisional; Region: ldcA; PRK11253" /db_xref="CDD:183059" misc_feature complement(order(1227817..1227822,1227934..1227939, 1227946..1227951,1227955..1227960,1228024..1228029, 1228033..1228038,1228336..1228341)) /gene="ldcA" /locus_tag="SF1182" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132882" misc_feature complement(order(1227769..1227771,1227979..1227981, 1228261..1228263)) /gene="ldcA" /locus_tag="SF1182" /note="catalytic triad [active]" /db_xref="CDD:132882" gene 1228631..1229290 /gene="mltE" /locus_tag="SF1183" /db_xref="GeneID:1024114" CDS 1228631..1229290 /gene="mltE" /locus_tag="SF1183" /note="Code: M; COG: COG0741" /codon_start=1 /transl_table=11 /product="lytic murein endotransglycosylase E" /protein_id="NP_707091.1" /db_xref="GeneID:1024114" /translation="MPVVTLTGIPGYTGLRIEIDMVCLFDWLLAGCSSKHDYTNPPWN AKVPVQRAMQWMPISQKAGAAWGVDPQLITAIIAIESGGNPNAVSKSNAIGLMQLKAS TSGRDVYRRMGWSGEPTTSELKNPERNISMGAAYLNILETGPLAGIEDPKVLQYALVV SYANGAGALLRTFSSDRKKAISKINDLDADEFLDHVARNHPAPQAPRYIYKLEQALDA M" misc_feature 1228712..1229287 /gene="mltE" /locus_tag="SF1183" /note="membrane-bound lytic murein transglycosylase EmtA; Region: emtA; PRK15470" /db_xref="CDD:185367" gene complement(1229292..1230026) /gene="ycgR" /locus_tag="SF1184" /db_xref="GeneID:1024113" CDS complement(1229292..1230026) /gene="ycgR" /locus_tag="SF1184" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707092.1" /db_xref="GeneID:1024113" /translation="MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKIL AITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFIT VPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKP AELQEGMRFAQIEVNMGQWGVFHFDAQLISTSERKVIDGKNETITTPRLSFRFLNVSP TVERQLQRIIFSLEREAREKADKVRD" misc_feature complement(1229310..1229939) /gene="ycgR" /locus_tag="SF1184" /note="Cyclic di-GMP-binding flagellar brake protein FlgZ/YcgR, contains PilZNR(YcgR) and PilZ domains [Cell motility]; Region: YcgR; COG5581" /db_xref="CDD:444320" gene 1230194..1230481 /locus_tag="SF1185" /db_xref="GeneID:1024157" CDS 1230194..1230481 /locus_tag="SF1185" /note="Code: S; COG: COG2261" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707093.1" /db_xref="GeneID:1024157" /translation="MRPIHRNEGLNMGIIAWIIFGLIAGIIGKLIMPGRDGGGFFLTC ILGIVGAVVGGWLATMFGIDGSISGFNLHSFLVAVVGAILVLGVFRLLRRE" misc_feature 1230227..1230475 /locus_tag="SF1185" /note="Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only]; Region: YeaQ; COG2261" /db_xref="CDD:441862" gene 1230618..1231133 /gene="mltE" /locus_tag="SF1186" /db_xref="GeneID:1024150" CDS 1230618..1231133 /gene="mltE" /locus_tag="SF1186" /note="Code: M; COG: COG0741" /codon_start=1 /transl_table=11 /product="lytic murein endotransglycosylase E" /protein_id="NP_707094.1" /db_xref="GeneID:1024150" /translation="MQRAMQWMPISQKAGAAWGVDPQLITAIIAIESGGNPNAVSKSN AIGLMQLKASTSGRDVYRRMGWSGEPTTSELKNPERNISMGAAYLNILETGPLAGIED PKVLQYALVVSYANGAGALLRTFSSDRKKAISKINDLDADEFLDHVARNHPAPQAPRY IYKLEQALDAM" misc_feature 1230618..1231130 /gene="mltE" /locus_tag="SF1186" /note="membrane-bound lytic murein transglycosylase EmtA; Region: emtA; PRK15470" /db_xref="CDD:185367" gene complement(1231135..1231869) /locus_tag="SF1187" /db_xref="GeneID:1024162" CDS complement(1231135..1231869) /locus_tag="SF1187" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707095.1" /db_xref="GeneID:1024162" /translation="MSHYHEQFLKQNPLAVLGVLRDLHKAAIPLRLSWNGGQLISKIL AITPDKLVLDFGSQAEDNIAVLKAQHITITAETQGAKVEFTVEQLQQSEYLQLPAFIT VPPPTLWFVQRRRYFRISAPLHPPYFCQTKLADNSTLRFRLYDLSLGGMGALLETAKP AELQEGMRFAQIEVNMGQWGVFHFDAQLISTSERKVIDGKNETITTPRLSFRFLNVSP TVERQLQRIIFSLEREAREKADKVRD" misc_feature complement(1231153..1231782) /locus_tag="SF1187" /note="Cyclic di-GMP-binding flagellar brake protein FlgZ/YcgR, contains PilZNR(YcgR) and PilZ domains [Cell motility]; Region: YcgR; COG5581" /db_xref="CDD:444320" gene 1232070..1232324 /gene="ymgE" /locus_tag="SF1188" /db_xref="GeneID:1024097" CDS 1232070..1232324 /gene="ymgE" /locus_tag="SF1188" /note="Code: S; COG: COG2261" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707096.2" /db_xref="GeneID:1024097" /translation="MGIIAWIIFGLIAGIIGKLIMPGRDGGGFFLTCILGIVGAVVGG WLATMFGIDGSISGFNLHSFLVAVVGAILVLGVFRLLRRE" misc_feature 1232070..1232318 /gene="ymgE" /locus_tag="SF1188" /note="Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only]; Region: YeaQ; COG2261" /db_xref="CDD:441862" gene complement(1232374..1234349) /gene="prrA" /locus_tag="SF1189" /pseudo /db_xref="GeneID:1024161" misc_feature complement(1232374..1234349) /gene="prrA" /locus_tag="SF1189" /note="'Similar to Escherichia coli O157:H7 EDL933 outer membrane receptor, probably tonB dependent ref: NP_287437.1 (656 aa). BLAST with identity of 98% in 659 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene complement(1234354..1235208) /gene="modD" /locus_tag="SF1190" /db_xref="GeneID:1024172" CDS complement(1234354..1235208) /gene="modD" /locus_tag="SF1190" /note="Code: H; COG: COG0157" /codon_start=1 /transl_table=11 /product="molybdenum transport protein ModD" /protein_id="NP_707097.2" /db_xref="GeneID:1024172" /translation="MIFLSQAQIDALLLEDIQGGDLTTRALNIGHQPGYIAFFHRQGG CVSGVSVACKMLTTLGLTIDDAVSDGSQANAGQRLIRAQGNAAALHQGWKAVQNVLEW SCGVSDYLAQMLALLRERYPDGNIACTRKAIPGTRLLASQAILAAGGLIHRAGCAETI LLFANHRHFLHDNQGWSGAIAQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKF SPQQATEIAQIAPSLAPHCTLALTGGINLTTLKNYLDCGIRLFITSAPYYAAPADIKV SLQPTASI" misc_feature complement(1234357..1235208) /gene="modD" /locus_tag="SF1190" /note="molybdenum transport protein ModD; Provisional; Region: PRK06096" /db_xref="CDD:180397" gene complement(1235208..1236017) /locus_tag="SF1191" /db_xref="GeneID:1024166" CDS complement(1235208..1236017) /locus_tag="SF1191" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707098.1" /db_xref="GeneID:1024166" /translation="MLIDDIDFADLYLQQLKLAHRTEKTPDHWDQRAEKMAENCASPT DSYLQQLIAKIDLQGAQTLFDMGCGPGTVSLALADKLTTVYGVDYSQGMLNVAARRAA ALKADNVHWIQRAWEEDWSDLPRCDIAVASRSTLVADMRHAMSKLNNQARLRVYTTHL VSTSFVSPAIQRAAGREVIELPNYIFALNVLYQMGIYAHVDFIRGQNCQQDNSTWERF EQNVSWSLGALNDDERERLYHWYQQQDARALAPASRDWALIWWDSVPQEAL" misc_feature complement(<1235577..1235873) /locus_tag="SF1191" /note="Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Region: UbiE; COG2226" /db_xref="CDD:441828" gene complement(1236027..1236785) /locus_tag="SF1192" /db_xref="GeneID:1024140" CDS complement(1236027..1236785) /locus_tag="SF1192" /note="Code: PH; COG: COG1120" /codon_start=1 /transl_table=11 /product="ferric enterobactin ABC transporter ATP-binding protein" /protein_id="NP_707099.1" /db_xref="GeneID:1024140" /translation="MTLLAVRHASLGYSRHPVLRDVSFTLSQGTICCLLGANGCGKTT LMRSILGVIPLLKGEILLDSLSVQTLSHRQRAQAIAWVPQAHDGIFAFSVLDMVLMGL APTIGAFSVPGKQERLKATEQLEKLGILHLATRRWNTLSGGERQLALIARALVQQPRL LLLDEPASSLDFGHQIQLLDTLAQLKNNGMTMLMSTHHTLHANAIADSIIQVEPDGRV TQGLPTEQLTTNKLAALYRVSADQIHHHLSAISR" misc_feature complement(1236042..1236779) /locus_tag="SF1192" /note="ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism]; Region: FepC; COG1120" /db_xref="CDD:440737" gene complement(1236782..1237762) /locus_tag="SF1193" /db_xref="GeneID:1024139" CDS complement(1236782..1237762) /locus_tag="SF1193" /note="Code: PH; COG: COG0609" /codon_start=1 /transl_table=11 /product="iron ABC transporter permease" /protein_id="NP_707100.1" /db_xref="GeneID:1024139" /translation="MRIVNGCILLLAAISITFAAVSGAYHLDMQQLLALILRQENESV QEQIVFWQIRVPRILAALLLGAALAGAGTTYQGMLRNPLVSPDILGVSAGAGLGACAA ILWGLPIVYIQLYAFCGGLMVVAGVWLITRRVTRHDPILTLVLVGIALGTLCGAGISL IKTLADPYTQLPSITFWLLGGLSTVTLRDLCYAAPIILIGSLPLFFLRWRMNLLTLSD DEARSLGLNVTRLRFGLIVCATLITASTVAIAGIIGWIGLVVPHIARLLTGHNHQQLL PMAMCTGAILLLLTDTLARSIGTTEIPLGILTAFVGAPFFLLLLLRGGRQ" misc_feature complement(1236821..1237696) /locus_tag="SF1193" /note="ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]; Region: FepD; COG0609" /db_xref="CDD:440374" gene complement(1237762..1238784) /locus_tag="SF1194" /db_xref="GeneID:1024159" CDS complement(1237762..1238784) /locus_tag="SF1194" /note="Code: P; COG: COG0614" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_707101.2" /db_xref="GeneID:1024159" /translation="MPITRRTFAQALASTLLLQSLPSFSQTVNRFASQSLPEAQNITR IVSAGAPADLLLLAVAPEKMVGFSSFDFARQALIPLPEHIRQLPRLGRLAGRASTLSL EGLMALHPDLVVDCGNTDETLISQARQVSEQTQIPWLLLNGKLAQSAEQLTTLGKTLG EEHRAAEQANLASHFVGEAQAFATSPAANLRFYAARGPRGLETGLQGSLHTEAAELLG LHNVAQIADRHGLTQVSMENLLRWQPDIILVQEAVTADFIRRDPLWQGVKAVAEQRIL FLSGLPFGWLDAPPGINRLLGLRRLHAWLDPAINRQFKSDMQHYAQLFWHCSLSDADY QKLVAS" misc_feature complement(1237918..1238673) /locus_tag="SF1194" /note="Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding...; Region: HemV-2; cd01147" /db_xref="CDD:238567" misc_feature complement(1238530..1238532) /locus_tag="SF1194" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:238567" gene 1239104..1239562 /locus_tag="SF1195" /db_xref="GeneID:1024151" CDS 1239104..1239562 /locus_tag="SF1195" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707102.1" /db_xref="GeneID:1024151" /translation="MNILLTEVKRMLGVIQNLCCCRPDSPLADSKQRNQKLPQQDFED FKNDVINVINNNEDIYFLRESNLLNAFIRTCKKRDDNSYGNMIFTLYFDNDIYGNRII KASLNGGELQLLSTGCSNDNILHFGNDSNLLIVFYVQIMPDDLVMQLHRF" mobile_element complement(1239482..1240250) /mobile_element_type="insertion sequence:IS1" gene complement(1239920..1240195) /gene="insA" /locus_tag="SF1197" /db_xref="GeneID:1024146" CDS complement(1239920..1240195) /gene="insA" /locus_tag="SF1197" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707104.1" /db_xref="GeneID:1024146" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1239923..1240174) /gene="insA" /locus_tag="SF1197" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" mobile_element 1240514..1241842 /mobile_element_type="insertion sequence:iso-IS10R" gene 1240621..1241829 /locus_tag="SF1198" /db_xref="GeneID:1026292" CDS 1240621..1241829 /locus_tag="SF1198" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_707105.1" /db_xref="GeneID:1026292" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature 1240735..1241790 /locus_tag="SF1198" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene 1241967..1242406 /gene="ycgY" /locus_tag="SF1199" /pseudo /db_xref="GeneID:1024141" misc_feature 1241967..1242406 /gene="ycgY" /locus_tag="SF1199" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787446 (147 aa). BLAST with identity of 99% in 147 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(1242485..1244182) /gene="treA" /locus_tag="SF1200" /db_xref="GeneID:1024133" CDS complement(1242485..1244182) /gene="treA" /locus_tag="SF1200" /note="Code: G; COG: COG1626" /codon_start=1 /transl_table=11 /product="trehalase" /protein_id="NP_707106.2" /db_xref="GeneID:1024133" /translation="MKSPAPSRPQKMALIPACIFLCFAALSVQAEETPVTPQPPDILL GPLFNDVQNVKLFPDQKTFADAVPNSDPLMILADYRMQQNQSGFDLRHFVNVNFTLPK EGEKYVPPEGQSLREHIDGLWPVLTRSTENTEKWDSLLPLPEPYVVPGGRFREVYYWD NYFTMLGLAESGHWDKVADMVANFAHEINTYGHIPNGNRSYYLSRSQPPFFALMVELL AQHEGDAALKQYLPQMQKEYAYWMDGVENLQAGQQEKRVVKLQDSTLLNRYWDDRDTP RPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLNTLRTTSIVP VDLNSLMFKMEKILARASKAAGDNAMANQYETLANARQKGIEKYLWNDQQGWYADYDL KSHKVRNQLTAAALFPLYVNAAAKDRANKMATATKTHLLQPGGLNTTSVKSGQQWDAP NGWAPLQWVATEGLQNYGQKEVAMDISWHFLTNVQHTYDREKKLVEKYDVSTTGTGGG GGEYPLQDGFGWTNGVTLKMLDLICPKEQPCDNVPATHPTVKSATTQPSTKEAQPTP" misc_feature complement(1242488..1244182) /gene="treA" /locus_tag="SF1200" /note="alpha,alpha-trehalase TreA; Region: treA; PRK13271" /db_xref="CDD:237326" gene complement(1244502..1245920) /gene="ycgC" /locus_tag="SF1201" /db_xref="GeneID:1026300" CDS complement(1244502..1245920) /gene="ycgC" /locus_tag="SF1201" /codon_start=1 /transl_table=11 /product="dihydroxyacetone kinase subunit M" /protein_id="NP_707107.2" /db_xref="GeneID:1026300" /translation="MVNLVIVSHSSRLGEGVGELARQMLMSDSCKIAIAAGIDDPQNP IGTDAVKVMEAIESVADADHVLVMMDMGSALLSAETALELLAPEIAAKVRLCAAPLVE GTLAATVSAASGADIDKVIFDAMHALEAKREQLGLPSSDTEISDTCPPYDEEARSLAV VIKNRNGLHVRPASRLVYTLSTFNADMLLEKNGKCVTPESINQIALLQVRYNDTLRLI AKGPEAEEALIAFRHLAEDNFGETEEVAPPTLRPVLPVSGKAFYYQPVLCTVQAKSTL TAEEEQDRLRQAIDFTLLDLMTLTAKAEASGLDDIAAIFSGHHTLLGDPELLAAASEL LQHEHCTAEYAWQQVLKELSQQYQQLDDEYLQARYIDVDDLLHRTLVHLTQTKEELPQ FNSPTILLAENIYPSTVLQLDPAVVKGICLSAGSPVSHSALIARELGIGWICQQGEKL YAIQPEETLTLDVKTQRFNRQG" misc_feature complement(1244505..1245920) /gene="ycgC" /locus_tag="SF1201" /note="dihydroxyacetone kinase subunit M; Provisional; Region: PRK11377" /db_xref="CDD:183108" gene complement(1245931..1246563) /locus_tag="SF1202" /db_xref="GeneID:1024135" CDS complement(1245931..1246563) /locus_tag="SF1202" /note="Code: G; COG: COG2376" /codon_start=1 /transl_table=11 /product="dihydroxyacetone kinase subunit DhaL" /protein_id="NP_707108.2" /db_xref="GeneID:1024135" /translation="MSLSRTQIVNWLTRCGDIFNTESEYLTGLDREIGDADHGLNMNR GFSKVVEKLPAIADKDIGFILKNTGMTLLSSVGGASGPLFGTFFIRAAQATQARQSLT LEELYQMFRDGADGVISRGKAEPGDKTMCDVWVPVVESLRQSSEQNLSVPVALEAASS IAESAAQSTITMQARKGRASYLGERSIGHQDPGATSVMFMMQMLALAAKE" misc_feature complement(1245934..1246563) /locus_tag="SF1202" /note="dihydroxyacetone kinase ADP-binding subunit DhaL; Region: PRK10005" /db_xref="CDD:182192" gene complement(1246574..1247674) /locus_tag="SF1203" /db_xref="GeneID:1024137" CDS complement(1246574..1247674) /locus_tag="SF1203" /note="Code: G; COG: COG2376" /codon_start=1 /transl_table=11 /product="dihydroxyacetone kinase subunit DhaK" /protein_id="NP_707109.2" /db_xref="GeneID:1024137" /translation="MPYRNCWSKIMKKLINDVQDVLDEQLAGLAKAHPSLTLHQDPVY VTRADAPVAGKVALLSGGGSGHEPMHCGYIGQGMLSGACPGEIFTSPTPDKIFECSMQ IDGGEGVLLIIKNYTGDILNFETATELLHDSGVKVTTVVIDDDVAVKDSLYTAGRRGV ANTVLIEKLVGAAAERGDSLDACAELGRKLNNQGHSIGIALGACTVPAAGKPSFTLAD NEMEFGVGIHGEPGIDRRPFSSLDQTVDEMFDTLLEHGSYHRTLRFWDYQQGSWQEEP QTKQPLQSGDRVIALVNNLGATPLSELYGVYNRLTTRCQQAGLTIERNLIGAYCTSLD MTGFSITLLKVDDETLALWDAPVHTPALNWGK" misc_feature complement(1246577..1247644) /locus_tag="SF1203" /note="dihydroxyacetone kinase subunit DhaK; Provisional; Region: PRK11468" /db_xref="CDD:183150" gene 1247863..1249791 /locus_tag="SF1204" /db_xref="GeneID:1024158" CDS 1247863..1249791 /locus_tag="SF1204" /note="Code: Q; COG: COG3284" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator DhaR" /protein_id="NP_707110.1" /db_xref="GeneID:1024158" /translation="MRDMSGAFNNDGRGISPLIATSWERCNKLMKRETWNVPHQAQGV TFASIYRRKKAMLTLGQAALEDAWEYMAPRECALFILDETACILSRNGDPQTLQQLSA LGFNDGTYCAEGIIGTCALSLAAISGQAVKTMADQHFKQALWNWAFCATPLFDSKGRL TGTIALACPVEQTTAADLPLTLAIAREVGNLLLTDSLLAETNRHLNQLNALLESMDDG VISWDEQGNLQFINAQAARVLRLDATASQGRAITELLTLPAVLQQAIKLAHPLKHVEA TFESQHQFIDAVITLKPIIETQGTSFILLLHPVEQMRQLMTSQLGKVSHTFAHMPQDD PQTRRLIHFGRQAARSSFPVLLCGEEGVGKALLSQAIHNESERAAGPYIAVNCELYGD AALAEEFIGGDRTDNENGRLSRLELAHGGTLFLEKIEYLAVELQSALLQVIKQGVITR LDARRLIPIDVKVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRRGSIPAL VNNKLRSLEKRFSTRLKIDDDALARLVSCAWPGNDFELYSVIENLALSSDNGRIRVSD LPEHLFTEQATDDVSATRLSTSLSFAEVEKEAIINAAQVTGGRIQEMSALLGIGRTTL WRKMKQHGIDAGQFKRRV" misc_feature 1247872..1249785 /locus_tag="SF1204" /note="DNA-binding transcriptional regulator DhaR; Provisional; Region: PRK11388" /db_xref="CDD:183114" gene complement(1249891..1252758) /locus_tag="SF1205" /db_xref="GeneID:1024188" CDS complement(1249891..1252758) /locus_tag="SF1205" /codon_start=1 /transl_table=11 /product="adhesion and penetration protein" /protein_id="NP_707111.1" /db_xref="GeneID:1024188" /translation="MGIKQHNGNTKADRLAELKIRSPSIQLIKFGAIGLNAIIFSPLL IAADTGSQYGTNITINDGDRITGDTADPSGNLYGVMTPAGNTPGNINLGNDVTVNVND ASGYAKGIIIQGKNSSLTANRLTVDVVGQTSAIGINLIGDYTHADLGTGSTIKSNDDG IIIGHSSTLTATQFTIENSNGIGLTINDYGTSVDLGSGSKIKTDGSTGVYIGGLNGNN ANGAARFTATDLTIDVQGYSAMGINVQKNSVVDLGTNSTIKTNGDNAHGLWSFGQVSA NALTVDVTGAAANGVEVRGGTTTIGADSHISSAQGGGLVTSSSDATINFSGTAAQRNS IFSGGSYGASAQTATAVINMQNTDITVDRNGSLALGLWALSGGRITGDSLAITGAAGA RGIYAMTNSQIDLTSDLVIDMSTPDQMAIATQHDDGYAASRINASGRMLINGSVLSKG GLINLDMHPGSVWTGSSLSDNVNGGKLDVAMNNSVWNVTSNSNLDTLALSHSTVDFAS HGSTAGTFTTLNVENLSGNSTFIMRADVVGEGNGVNNRGDLLNISGSSAGNHVLAIRN QGSEATTGNEVLTVVKTTDGAASFSASSQVELGGYLYDVRKNGTNWELYASGTVPEPT PNPEPTPAPAQPPIVNPDPTPEPAPTPKPTTTADAGGNYLNVGYLLNYVENRTLMQRM GDLRNQSKDGNIWLRSYGGSLDSFASGKLSGFDMGYSGIQFGGDKRLSDVMPLYVGLY IDSTHASPDYSGGDGTARSDYMGMYASYMAQNGFYSDLVIKASRQKNSFHVLDSQNNG VNANGTANGMSISLEAGQRFNLSPTGYGFYIEPQTQLTYSHQNEMAMKASNGLNIHLN HYESLLGRASMILGYDITAGNSQLNVYVKTGAIREFSGDTEYLLNDSREKYSFKGNGW NNGVGVSAQYNKQHTFYLEADYTQGNLFDQKQVNGGYRFSF" misc_feature complement(<1250917..1252602) /locus_tag="SF1205" /note="intestinal colonization autotransporter adhesin MisL; Region: PRK15313" /db_xref="CDD:237940" misc_feature complement(1250899..1251630) /locus_tag="SF1205" /note="Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343" /db_xref="CDD:238653" misc_feature complement(1249894..1251225) /locus_tag="SF1205" /note="outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414" /db_xref="CDD:273608" gene 1253103..1253306 /locus_tag="SF1205a" /db_xref="GeneID:16608318" CDS 1253103..1253306 /locus_tag="SF1205a" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_008439242.1" /db_xref="GeneID:16608318" /translation="MYLHNKNNMRHFCITNKKKQKTSIFIFVQWIFWPIVIIVLLVII FILPGSHVITLFGDFICGILPFR" gene complement(1253602..1254693) /gene="ychF" /locus_tag="SF1206" /db_xref="GeneID:1024185" CDS complement(1253602..1254693) /gene="ychF" /locus_tag="SF1206" /note="Code: R; COG: COG0012" /codon_start=1 /transl_table=11 /product="GTP-binding protein YchF" /protein_id="NP_707112.1" /db_xref="GeneID:1024185" /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV PMPDPRLDQLAEIVKPQRTLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH VVRCFENDNIIHVSGKVNPADDIEVINTELALADLDTCERAIHRVQKKAKGGDKDAKA ELAVLEKCLPQLENAGMLRALDLSAEEKAAIRYLSFLTLKPTMYIANVNEDGFENNPY LDQVREIAAKEGSVVVPVCAAVEADIAELDDEERDEFMQELGLEEPGLNRVIRAGYKL LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTISFEDFITYKGEQ GAKEAGKMRAEGKDYIVKDGDVMNFLFNV" misc_feature complement(1253605..1254687) /gene="ychF" /locus_tag="SF1206" /note="Ribosome-binding ATPase YchF, GTP1/OBG family [Translation, ribosomal structure and biogenesis]; Region: GTP1; COG0012" /db_xref="CDD:439783" gene complement(1254810..1255394) /gene="pth" /locus_tag="SF1207" /db_xref="GeneID:1024197" CDS complement(1254810..1255394) /gene="pth" /locus_tag="SF1207" /note="Code: J; COG: COG0193" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase" /protein_id="NP_707113.1" /db_xref="GeneID:1024197" /translation="MTIKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAK FFGYTSRVTLGSEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGV AKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQK LIDEAIDEAARCTEMWFTDGLTKATNRLHAFKAQ" misc_feature complement(1254825..1255388) /gene="pth" /locus_tag="SF1207" /note="Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]; Region: Pth; COG0193" /db_xref="CDD:439963" gene 1255672..1255950 /gene="ychH" /locus_tag="SF1208" /db_xref="GeneID:1024148" CDS 1255672..1255950 /gene="ychH" /locus_tag="SF1208" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707114.1" /db_xref="GeneID:1024148" /translation="MKRKNASILGNVLMGLGLVVMVVGVGYSILNQLPQFNMPQYFAH GAVLSIFVGAILWLAGARVGGHEQVCDRYWWVRHYDKRCRRSDNRRHS" misc_feature 1255672..1255947 /gene="ychH" /locus_tag="SF1208" /note="stress response protein YchH; Region: PRK10692" /db_xref="CDD:182651" gene complement(1256005..1257657) /gene="ychM" /locus_tag="SF1209" /db_xref="GeneID:1023361" CDS complement(1256005..1257657) /gene="ychM" /locus_tag="SF1209" /note="Code: P; COG: COG0659" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707115.2" /db_xref="GeneID:1023361" /translation="MPFRALIDVCWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIG SGVAPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATLL SGIFLILMGLARFGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYLQ KVGALFMALPTINVGDAAIGIVTLGILVFWPRLGIRLPGHLPALLAGCAVMGIVNLLG GHVATIGSQFHYVLADGSQGNGIPQLLPQLVLPWDLPNSEFTLTWDSIRTLLPAAFSM AMLGAIESLLCAVVLDGMTGTKHKANSELVGQGLGNIIAPFFGGITATAAIARSAANV RAGATSPISAVIHSILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSEAHKVVDLLR HAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAPVVVDVPDDV LVLRVIGPLFFAAAEGLFTDLESRLEGKRIVILKWDAVPVLDAGGLDAFQRFVKRLPE GCELRVCNVEFQPLRTMARAGIQPIPGRLAFFPNRRAAMADL" misc_feature complement(1256008..1257657) /gene="ychM" /locus_tag="SF1209" /note="putative transporter; Provisional; Region: PRK11660" /db_xref="CDD:183265" gene complement(1257809..1258756) /gene="prsA" /locus_tag="SF1210" /db_xref="GeneID:1024194" CDS complement(1257809..1258756) /gene="prsA" /locus_tag="SF1210" /note="Code: FE; COG: COG0462" /codon_start=1 /transl_table=11 /product="ribose-phosphate pyrophosphokinase" /protein_id="NP_707116.2" /db_xref="GeneID:1024194" /translation="MPDMKLFAGNATPVLAQRIANRLYTSLGDAAVGRFSDGEVSVQI NENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVR SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP LSDEIKSLPNVRTLTLSGMLAEAIRRISNEESISAMFEH" misc_feature complement(1257815..1258747) /gene="prsA" /locus_tag="SF1210" /note="ribose-phosphate diphosphokinase; Region: PRK01259" /db_xref="CDD:234929" gene complement(1258907..1259758) /gene="ipk" /locus_tag="SF1211" /db_xref="GeneID:1024154" CDS complement(1258907..1259758) /gene="ipk" /locus_tag="SF1211" /note="Code: I; COG: COG1947" /codon_start=1 /transl_table=11 /product="4-diphosphocytidyl-2C-methyl-D-erythritol kinase" /protein_id="NP_707117.1" /db_xref="GeneID:1024154" /translation="MRTQWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTISIE LRDDGDIRLLTPVEGVEHEDNLIVRAARLLMKTAADSGRLPTGSGANISIDKRLPMGG GLGGGSSNAATVLVALNHLWQCGLSMDELAEMGLTLGADVPVFVRGHAAFAEGVGEIL TPVDPPEKWYLVAHPGVSIPTPVIFKDPELPRNTPKRSIETLLKCEFSNDCEVIARKR FREVDAVLSWLLEYAPSRLTGTGACVFAEFDTESEARQVLEQAPEWLNGFVAKGVNLS PLHRAML" misc_feature complement(1258910..1259758) /gene="ipk" /locus_tag="SF1211" /note="4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Region: ispE; TIGR00154" /db_xref="CDD:188029" gene complement(1259758..1260381) /gene="lolB" /locus_tag="SF1212" /db_xref="GeneID:1024152" CDS complement(1259758..1260381) /gene="lolB" /locus_tag="SF1212" /note="Code: M; COG: COG3017" /codon_start=1 /transl_table=11 /product="molecular chaperone LolB" /protein_id="NP_707118.1" /db_xref="GeneID:1024152" /translation="MPLPDFRLIRLLPLAALVLTACSVTTPKGPGKSPDSPQWRQHQQ DVRNLNQYQTRGAFAYISDQQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEI TYSQNGKNWKVVYGGYDTKTQPAMPANMELTDGGQRIKLKMDNWIVK" misc_feature complement(1259764..1260369) /gene="lolB" /locus_tag="SF1212" /note="outer membrane lipoprotein LolB; Region: lolB; TIGR00548" /db_xref="CDD:129639" misc_feature complement(order(1259770..1259772,1259779..1259781, 1259785..1259787,1259791..1259793,1259812..1259814, 1259818..1259820,1259827..1259829,1259863..1259865, 1259869..1259871,1259902..1259904,1260067..1260069, 1260073..1260075,1260094..1260096,1260100..1260102, 1260127..1260129,1260133..1260135,1260163..1260165, 1260169..1260171,1260175..1260177,1260202..1260204, 1260208..1260210,1260214..1260216,1260220..1260222)) /gene="lolB" /locus_tag="SF1212" /note="hydrophobic core; other site" /db_xref="CDD:319984" misc_feature complement(1260115..1260117) /gene="lolB" /locus_tag="SF1212" /note="lipid binding site [chemical binding]; lipid-binding site" /db_xref="CDD:319984" gene 1260595..1261851 /gene="hemA" /locus_tag="SF1213" /db_xref="GeneID:1024143" CDS 1260595..1261851 /gene="hemA" /locus_tag="SF1213" /note="Code: H; COG: COG0373" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA reductase" /protein_id="NP_707119.2" /db_xref="GeneID:1024143" /translation="MTLLALGINHKTAPVSLRERVSFSPDKLDQALDSLLAQPMVQGG VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEEDLRKSLYWHQDNDAVSHLMR VASGLDSLVLGEPQILGQVKKAFVDSQKGHMKASELERMFQKSFSVAKRVRTETDIGA SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER AQILADEVGAEVIALSEIDERLREADIIISSTASPLPIIGKGMVERALKSRRNQPMLL VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRKAAAVEAETIVAQETSEFMA WLRAQSASETIREYRSQAEHVRDELTAKALAALEQGGDAQAIMQDLAWKLTNRLIHAP TKSLQQAARDGDNERLNILRDSLGLE" misc_feature 1260595..1261848 /gene="hemA" /locus_tag="SF1213" /note="glutamyl-tRNA reductase; Reviewed; Region: hemA; PRK00045" /db_xref="CDD:234592" gene 1261893..1262975 /gene="prfA" /locus_tag="SF1214" /db_xref="GeneID:1027801" CDS 1261893..1262975 /gene="prfA" /locus_tag="SF1214" /note="Code: J; COG: COG0216" /codon_start=1 /transl_table=11 /product="peptide chain release factor 1" /protein_id="NP_707120.1" /db_xref="GeneID:1027801" /translation="MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQ LSDVSRCFTDWQQVQEDIETAQMMLDDPEMREMAQDELREAKEKSEQLEQQLQVLLLP KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYK EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDIN PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA RIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME GKLDMLIEPIIQEHQADQLAALSEQE" misc_feature 1261902..1262963 /gene="prfA" /locus_tag="SF1214" /note="Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Region: PrfA; COG0216" /db_xref="CDD:439986" gene 1262975..1263808 /gene="hemK" /locus_tag="SF1215" /db_xref="GeneID:1024180" CDS 1262975..1263808 /gene="hemK" /locus_tag="SF1215" /note="Code: J; COG: COG2890" /codon_start=1 /transl_table=11 /product="N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase" /protein_id="NP_707121.1" /db_xref="GeneID:1024180" /translation="MEYQHWLREAISQLQASESPRRDAEILLEHVTGRGRTFILAFGE TQLTDEQCQQLDALLTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQA LARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN IHILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIV HIIEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRYY Q" misc_feature 1262975..1263805 /gene="hemK" /locus_tag="SF1215" /note="HemK family putative methylases; Region: hemK_fam; TIGR00536" /db_xref="CDD:273125" gene 1263805..1264197 /locus_tag="SF1216" /db_xref="GeneID:1024178" CDS 1263805..1264197 /locus_tag="SF1216" /note="Code: S; COG: COG3094" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707122.1" /db_xref="GeneID:1024178" /translation="MTSFSTLLSVHLISIALSVGLLTLRFWLRYQKHPQAFARWTRIV PPVVDTVLLLSGIALMAKAHILPFSGQAQWLTEKLFGVIIYIVLGFIALDYRRMHSQQ ARIIAFPLALVVLYIIIKLATTKVPLLG" misc_feature 1263805..1264194 /locus_tag="SF1216" /note="SirB family protein; Region: PRK10278" /db_xref="CDD:182351" gene 1264201..1265010 /gene="ychA" /locus_tag="SF1217" /db_xref="GeneID:1024155" CDS 1264201..1265010 /gene="ychA" /locus_tag="SF1217" /note="Code: S; COG: COG2912" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707123.1" /db_xref="GeneID:1024155" /translation="MRSLADFEFNKAPLCEGMILACEAIRRDFPSQDVYDELERLVSL AKEEISQLLPLEEQLEKLIALFYGDWGFKASRGVYRLSDALWLDQVLKNRQGSAVSLG AVLLWVANRLDLPLLPVIFPTQLILRIECPDGEIWLINPFNGESLSEHMLDGWLKGNI SPSAELFYEDLDEADNIEVIRKLLDTLKASLMEENQMELALRTSEALLQFNPEDPYEI RDRGLIYAQLDCEHVALNDLSYFVERCPEDPISEMIRAQINNIAHKHIVLH" misc_feature 1264201..1265007 /gene="ychA" /locus_tag="SF1217" /note="tetratricopeptide repeat-containing protein; Region: PRK10941" /db_xref="CDD:182854" misc_feature 1264759..1264830 /gene="ychA" /locus_tag="SF1217" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276810" misc_feature 1264840..1264932 /gene="ychA" /locus_tag="SF1217" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276810" gene 1265046..1265900 /gene="kdsA" /locus_tag="SF1218" /db_xref="GeneID:1024177" CDS 1265046..1265900 /gene="kdsA" /locus_tag="SF1218" /note="Code: M; COG: COG2877" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxyphosphooctonate aldolase" /protein_id="NP_707124.1" /db_xref="GeneID:1024177" /translation="MKQKVVSIGDINVANDLPFVLFGGMNVLESRDLAMRICEHYVTV TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKIITDVHEPSQA QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFKEGGN EKVILCDRGANFGYDNLVVDMLGFSIMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR AQVAELARAGMAVGLAGLFIEAHPDPEHAKCDGPSALPLAKLEPFLKQMKAIDDLVKG FEELDTSK" misc_feature 1265070..1265867 /gene="kdsA" /locus_tag="SF1218" /note="2-dehydro-3-deoxyphosphooctonate aldolase; Provisional; Region: PRK05198" /db_xref="CDD:235363" gene complement(1266049..1266216) /locus_tag="SF1218a" /db_xref="GeneID:16608319" CDS complement(1266049..1266216) /locus_tag="SF1218a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439243.1" /db_xref="GeneID:16608319" /translation="MKPDTSRIAAKMLSLQQGGYMTLAQFAMTFWHDLAAPILAGIIA AAIVSWWRNRK" misc_feature complement(1266052..1266156) /locus_tag="SF1218a" /note="Toxin Ldr, type I toxin-antitoxin system; Region: Ldr_toxin; pfam13940" /db_xref="CDD:404772" gene complement(1266562..1267662) /gene="chaA" /locus_tag="SF1219" /db_xref="GeneID:1024182" CDS complement(1266562..1267662) /gene="chaA" /locus_tag="SF1219" /note="Code: P; COG: COG0387" /codon_start=1 /transl_table=11 /product="calcium/sodium:proton antiporter" /protein_id="NP_707125.1" /db_xref="GeneID:1024182" /translation="MSNAQEAVKTRHKETSLIFPVLVLVVLFLWGSSQTLPVVIAINL LALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTL MRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMA LPAANFSTGQALLVALISAAMYGVFLLIQAKTHQSLFVYEHEDDSDDDDPHHGKTSAH SSLWHAIWLIIHLIAVIAVTKMNASSLETLLDSMNAPVAFTGFLVALLILSPEGLGAL KAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAFMTGNELQFALGAPEMVVMVASLV LCHISFSTGRTNVLNGAAHLALFAAYLMTIFA" misc_feature complement(1266565..1267662) /gene="chaA" /locus_tag="SF1219" /note="sodium-potassium/proton antiporter ChaA; Region: PRK10599" /db_xref="CDD:182580" gene 1267931..1268161 /gene="chaB" /locus_tag="SF1220" /db_xref="GeneID:1024189" CDS 1267931..1268161 /gene="chaB" /locus_tag="SF1220" /codon_start=1 /transl_table=11 /product="cation transport regulator" /protein_id="NP_707126.1" /db_xref="GeneID:1024189" /translation="MPYKTKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYKDKEDRRD DASREETAHKVAWAAVKHEYAKGDDDKWHKKS" misc_feature 1267931..1268155 /gene="chaB" /locus_tag="SF1220" /note="Cation transport regulator ChaB [Inorganic ion transport and metabolism]; Region: ChaB; COG4572" /db_xref="CDD:443629" gene 1268298..1269014 /gene="chaC" /locus_tag="SF1221" /db_xref="GeneID:1024198" CDS 1268298..1269014 /gene="chaC" /locus_tag="SF1221" /note="Code: P; COG: COG3703" /codon_start=1 /transl_table=11 /product="cation transport regulator" /protein_id="NP_707127.2" /db_xref="GeneID:1024198" /translation="MQWRRCKVITRDFLMNADCKTAFGAIEESLLWSAEQRAASLAAT LACRPDEGPVWIFGYGSLMWNPALEFTESCTGTLVGWHRAFCLRLTAGRGTAHQPGRM LALKEGGRTTGVAYRLPEETLEQELTLLWKREMITGCYLPTWCQLDLDDGRTVNAIVF IMDPRHPEYESDTRAQVIAPLIAAASGPLGTNAQYLFSLEQELIKLGMQDDGLNDLLV SVKKLLAENYPDGVLRPGFA" misc_feature 1268412..1268975 /gene="chaC" /locus_tag="SF1221" /note="Gamma-glutamylcyclotransferase ChaC2 (glutathione degradation) [Inorganic ion transport and metabolism]; Region: ChaC2; COG3703" /db_xref="CDD:442917" gene complement(1269058..1269411) /gene="ychN" /locus_tag="SF1222" /db_xref="GeneID:1024181" CDS complement(1269058..1269411) /gene="ychN" /locus_tag="SF1222" /note="Code: P; COG: COG1553" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707128.1" /db_xref="GeneID:1024181" /translation="MQKIVIVANGAPYGSESLFNSLRLAIALREQESNLDLRLFLMSD AVTAGLRGQKPGEGYNIQQMLEILTAQNVPVKLCKTCTDGRGISTLPLIDGVEIGTLV ELAQWTLSADKVLTF" misc_feature complement(1269061..1269408) /gene="ychN" /locus_tag="SF1222" /note="Sulfur relay (sulfurtransferase) complex TusBCD TusD component, DsrE family [Inorganic ion transport and metabolism]; Region: DsrE; COG1553" /db_xref="CDD:441162" gene 1269737..1270990 /gene="ychP" /locus_tag="SF1223" /db_xref="GeneID:1024169" CDS 1269737..1270990 /gene="ychP" /locus_tag="SF1223" /codon_start=1 /transl_table=11 /product="invasin" /protein_id="NP_707129.2" /db_xref="GeneID:1024169" /translation="MAPENHDGEKHFAEIVKDFGETSMNDNGLDTGEQAKAFALGKVR DALSQQVNQHVESWLSPWGNASVDVKVDNEGHFTGSRGSWFVPLQDNDRYLTWSQLGL TQQDNGLVSNVGVGQRWARGNWLVGYNTFYDNLQDENLQRAGFGAEAWGEYLRLSANF YQPFAAWHEQTATQEQRMARGYDLTARMRMPFYQHLNTSVSLEQYFGDRVDLFNSGTG YHNPVALSLGLNYTPVPLVTVTAQHKQGESGENQNNLGLNLNYRFGVPLKKQLSAGEV AESQSLRGSRYDNPQRNNLPTLEYRQRKTLTVFLATPPWDLKPGETVPLKLQIRSRYG IRQLIWQGDTQILSLTPGAQANSAEGWTLIMPDWQNGEGASNHWRLSVVVEDNQGQRV SSNEITLTLVEPFDALSNDELRWEP" misc_feature 1269737..1270987 /gene="ychP" /locus_tag="SF1223" /note="YchO/YchP family invasin; Region: PRK10177" /db_xref="CDD:236661" gene complement(1270991..1271641) /gene="narL" /locus_tag="SF1224" /db_xref="GeneID:1024173" CDS complement(1270991..1271641) /gene="narL" /locus_tag="SF1224" /note="Code: TK; COG: COG2197" /codon_start=1 /transl_table=11 /product="transcriptional regulator NarL" /protein_id="NP_707130.2" /db_xref="GeneID:1024173" /translation="MSNQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQG IELAESLDPDLILLDLNMPGMNGLETLDKLREKSLSGRIVVFSVSNHEEDVVTALKRG ADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRE RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF" misc_feature complement(1270994..1271641) /gene="narL" /locus_tag="SF1224" /note="transcriptional regulator NarL; Provisional; Region: PRK10651" /db_xref="CDD:182619" gene complement(1271634..1273430) /gene="narX" /locus_tag="SF1225" /db_xref="GeneID:1024167" CDS complement(1271634..1273430) /gene="narX" /locus_tag="SF1225" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="nitrate/nitrite sensor protein NarX" /protein_id="NP_707131.1" /db_xref="GeneID:1024167" /translation="MLKRCLSPLTLVNQVALIVLLSTAIGLAGMAVSGWLVQGVQGSA HAINKAGSLRMQSYRLLAAVPLSEKDKPLIKEMEQTAFSAELTRAAERDGQLAQLQGL QDYWRNELIPALMRAQNRETVSADVSQFVAGLDQLVSGFDRTTEMRIETVVLVHRVMA VFMALLLVFTIIWLRARLLQPWRQLLAMASAVSHRDFTQRANISGRNEMAMLGTALNN MSAELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSRAPLCERLSPVLNGLQ NLTLLRDIELRVYDTDDEENHQEFTCQPDMTCDDKGCQLCPRGVLPVGDRGTTLKWRL ADSHTQYGILLATLPQGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERA TIARELHDSIAQSLSCMKMQVSCLQMQGDALPESSRELLSQIRNELNASWAQLRELLT TFRLQLTEPGLRPALEASCEEYSAKFGFPVKLDYQLPPRLVPSHQAIHLLQIAREALS NALKHSQASEVVVTVAQNDNQVKLTVQDNGCGVPENAIRSNHYGMIIMRDRAQSLRGD CRVRRRESGGTEVVVTFIPEKTFTDVQGDTHE" misc_feature complement(1271637..1273343) /gene="narX" /locus_tag="SF1225" /note="nitrate/nitrite two-component system sensor histidine kinase NarX; Region: PRK10600" /db_xref="CDD:182581" gene 1273769..1275160 /gene="narK" /locus_tag="SF1226" /db_xref="GeneID:1024179" CDS 1273769..1275160 /gene="narK" /locus_tag="SF1226" /note="Code: P; COG: COG2223" /codon_start=1 /transl_table=11 /product="nitrate transport protein NarK" /protein_id="NP_707132.2" /db_xref="GeneID:1024179" /translation="MSHSSASERATGAVITDWRPEDPAFWQQRGQRIASRNLWISVPC LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPIFGGR RWTAFSTGILIIPCVWLGFAVQDTSTPYSVFIIISLLCGFAGANFASSMANISFFFPK QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAVFGSQGVKQPDGTELYLANASWI WVPFLAIFTIAAWFGMNDLATSKASIKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG FAMLSKTQFPDVQILQYAFFGPFIGALARSAGGALSDRLGGTRVTLVNFILMAIFSGL LFLTLPTDGQGGSFMAFFAVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSD ERAMREAATGTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV VITWAVYGRHSKK" misc_feature 1273778..1275157 /gene="narK" /locus_tag="SF1226" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature order(1273910..1273915,1273922..1273927,1273934..1273936, 1274033..1274035,1274198..1274203,1274207..1274215, 1274222..1274224,1274279..1274281,1274288..1274293, 1274300..1274302,1274555..1274557,1274564..1274569, 1274576..1274584,1274591..1274593,1274669..1274671, 1274681..1274683,1274849..1274854,1274864..1274866, 1274876..1274878,1274987..1274989,1274996..1275001, 1275008..1275013,1275020..1275022) /gene="narK" /locus_tag="SF1226" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340899" gene 1275553..1279296 /gene="narG" /locus_tag="SF1227" /db_xref="GeneID:1024170" CDS 1275553..1279296 /gene="narG" /locus_tag="SF1227" /note="Code: C; COG: COG0243" /codon_start=1 /transl_table=11 /product="nitrate reductase 1 subunit alpha" /protein_id="NP_707133.1" /db_xref="GeneID:1024170" /translation="MSKFLDRFRYFKQKGETFADGHGQLLNTNRDWEDGYRQRWQHDK IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWY LYSANRLKYPMMRKRLMKMWREAKALHSDPVEAWASIIEDADKAKSFKQARGRGGFVR SSWQEVNELIAASNVYTIKNYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY DWYCYLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPSQYFTDYVRRY TDMPMLVMLEERDGYYAAGRMLRAADLVDALGQENNPEWKTVAFNTNGEMVAPNGSIG FRWGEKGKWNLEQRDGKTGEETELQLSLLGSQDEIAEVGFPYFGGDGTEHFNKVELEN VLLHKLPVKRLQLADGSTALVTTVYDLTLANYGLERGLNDVNCATSYDDVKAYTPAWA EQITGVSRSQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLIFCG CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV TAEELLSPMADKSRYTGHLIDFNVRAERMGWLPSAPQLGTNPLTIAGEAEKAGMNPVD YTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEFMLKYLLGTEHGIQ GKDLGQQGGVKPEEVDWQDNGLEGKLDLVVTLDFRLSSTCLYSDIILPTATWYEKDDM NTSDMHPFIHPLSAAVDPAWEAKSDWEIYKAIAKKFSEVCVGYLGKETDIVTLPIQHD SAAELAQPLDVKDWKKGECDLIPGKTAPHIMVVERDYPATYERFTSIGPLMEKIGNGG KGIAWNTQSEMDLLRKLNYTKAEGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAW AALSEFTGRDHTHLALNKEDEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKEVIGQKSNGNPEKALN FLTPHQKWGIHSTYSDNLLMLTLGRGGPVVWLSEADAKDLGIADNDWIEVFNSNGALT ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAH LAYGFNYYGTVGSNRDEFVVVRKMKNIDWLDGEGNDQVQESVK" misc_feature 1275556..1279260 /gene="narG" /locus_tag="SF1227" /note="Nitrate reductase alpha subunit [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NarG; COG5013" /db_xref="CDD:444037" gene 1279293..1280831 /gene="narH" /locus_tag="SF1228" /db_xref="GeneID:1024183" CDS 1279293..1280831 /gene="narH" /locus_tag="SF1228" /note="Code: P; COG: COG1140" /codon_start=1 /transl_table=11 /product="nitrate reductase 1 subunit beta" /protein_id="NP_707134.1" /db_xref="GeneID:1024183" /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGVEYAWFNNV ETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNRAMLLGKIFANPHLPGIDDYYE PFDFDYQNLHTAPEGSKSQPIARPRSLITGERMAKIEKGPNWEDDLGGEFDKLAKDKN FDNIQKAMYSQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCR GWRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYD ADAIERAASTENEKDLYQRQLDVFLDPNDPKVIEQAIKDGIPLSVIEAAQQSPVYKMA MEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVESLRIPVQYLAN LLTAGDTKPILRALKRMLAMRHYKRAETVDGKVDTRALEEVGLTEAQAQEMYRYLAIA NYEDRFVVPSSHRELAREAFPEKNGCGFTFGDGCHGSDTKFNLFNSRRIDAIDVTSKT EPHP" misc_feature 1279293..1280747 /gene="narH" /locus_tag="SF1228" /note="Nitrate reductase beta subunit [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NarY; COG1140" /db_xref="CDD:440755" gene 1280828..1281538 /gene="narJ" /locus_tag="SF1229" /db_xref="GeneID:1024186" CDS 1280828..1281538 /gene="narJ" /locus_tag="SF1229" /note="Code: C; COG: COG2180" /codon_start=1 /transl_table=11 /product="nitrate reductase 1 subunit delta" /protein_id="NP_707135.1" /db_xref="GeneID:1024186" /translation="MIELVIVSRLLEYPDAALWQHQQEMFEAIAASKNLSKEDAHALG IFLRDLTAMDPLDAQVQYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLLAQYEQHG LQLNSRELPDHLPLYLEYLSQLPQSEAVEGLKDIAPILALLSARLQQRESRYAVMFDL LLKLANTAIDSDKVAEKIADEARDDTPQALDAVWEEEQVKFFADKGCGDSAITAHQRR FAGAVAPQYLNITTGGQH" misc_feature 1280828..1281529 /gene="narJ" /locus_tag="SF1229" /note="chaperone protein TorD; Validated; Region: torD; cl00958" /db_xref="CDD:470012" gene 1281538..1282215 /gene="narI" /locus_tag="SF1230" /db_xref="GeneID:1024164" CDS 1281538..1282215 /gene="narI" /locus_tag="SF1230" /note="Code: C; COG: COG2181" /codon_start=1 /transl_table=11 /product="nitrate reductase 1 cytochrome b(NR) subunit gamma" /protein_id="NP_707136.1" /db_xref="GeneID:1024164" /translation="MQFLNMFFFDIYPYIAGAVFLIGSWLRYDYGQYTWRAASSQMLD RKGMNLASNLFHIGILGIFVGHFFGMLTPHWMYEAWLPIEVKQKMAMFAGGASGVLCL IGGVLLLKRRMFSPRVRATTTGADILILSLLVIQCTLGLLTIPFSAQHMDGSEMMKLV GWAQSVVTFHGGASQHLDGVAFIFRLHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKY QLVRARH" misc_feature 1281541..1282212 /gene="narI" /locus_tag="SF1230" /note="respiratory nitrate reductase, gamma subunit; Region: narI; TIGR00351" /db_xref="CDD:273030" misc_feature complement(1282223..1282663) /note="potential protein location (hypothetical protein SF1231 [Shigella flexneri 2a str. 301]) that overlaps RNA (tRNA-Y)" gene complement(1282577..1282661) /locus_tag="SF4466" /db_xref="GeneID:3170937" tRNA complement(1282577..1282661) /locus_tag="SF4466" /product="tRNA-Tyr" /codon_recognized="UAC" /db_xref="GeneID:3170937" gene complement(1282821..1283663) /gene="purU" /locus_tag="SF1232" /db_xref="GeneID:1024168" CDS complement(1282821..1283663) /gene="purU" /locus_tag="SF1232" /note="Code: F; COG: COG0788" /codon_start=1 /transl_table=11 /product="formyltetrahydrofolate deformylase" /protein_id="NP_707138.1" /db_xref="GeneID:1024168" /translation="MHSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRIVILVTKEAHCLGDLL MKANYGGLDVEIAAVIGNHDTLRSLVERFDIPFELVSHEGLSRNEHDQKMADAIDAYQ PDYVVLAKYMRVLTPEFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYKVLAQRVFVYGNR TIIL" misc_feature complement(1282824..1283663) /gene="purU" /locus_tag="SF1232" /note="formyltetrahydrofolate deformylase; Reviewed; Region: purU; PRK06027" /db_xref="CDD:235676" gene complement(1283713..1284171) /gene="ychJ" /locus_tag="SF1233" /db_xref="GeneID:1024163" CDS complement(1283713..1284171) /gene="ychJ" /locus_tag="SF1233" /note="Code: S; COG: COG3012" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707139.5" /db_xref="GeneID:1024163" /translation="MSQLCPCGSAVEYSLCCHPYVSGEKVAPDPEHLMRSRYCAFVMQ DADYLIKTWHPSCGAAALRAELMTGFAHTEWLGLTVFEHCWQDADNIGFVSFVARFTE GGKTGAIIERSRFLKENGQWYYIDGTRPQFGRNDPCPCGSGKKFKKCCGQ" misc_feature complement(1283716..1284171) /gene="ychJ" /locus_tag="SF1233" /note="hypothetical protein; Provisional; Region: PRK01617" /db_xref="CDD:234966" gene 1284284..1285189 /gene="ychK" /locus_tag="SF1234" /db_xref="GeneID:1026307" CDS 1284284..1285189 /gene="ychK" /locus_tag="SF1234" /note="Code: R; COG: COG1752" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707140.2" /db_xref="GeneID:1026307" /translation="MRKIKIGLALGSGAARGWSHIGVINALKKVGIEIDIVAGCSIGS LVGAAYACDRLSALEDWVTSFSYWDVLRLMDLSWQRGGLLRGERVFNQYREIMPETEI ENCSRRFAAVATNLSTGRELWFTEGDLHLAIRASCSIPGLMAPVAHNGYWLVDGAVVN PIPISLTRALGADIVIAVDLQHDAHLMQQDLLSFNVSEENSENGDSLPWHARLKERLG SITTRRAVTAPTATEIMTTSIQVLENRLKRNRMAGDPPDILIQPVCPQISTLDFHRAH AAIAAGQLAVERKMDELLPLVRTNI" misc_feature 1284284..1285183 /gene="ychK" /locus_tag="SF1234" /note="patatin-like phospholipase RssA; Region: PRK10279" /db_xref="CDD:182352" misc_feature order(1284320..1284325,1284329..1284331,1284404..1284406, 1284746..1284748) /gene="ychK" /locus_tag="SF1234" /note="active site" /db_xref="CDD:132866" misc_feature 1284398..1284412 /gene="ychK" /locus_tag="SF1234" /note="nucleophile elbow; other site" /db_xref="CDD:132866" gene 1285281..1286294 /gene="hnr" /locus_tag="SF1235" /db_xref="GeneID:1024217" CDS 1285281..1286294 /gene="hnr" /locus_tag="SF1235" /codon_start=1 /transl_table=11 /product="response regulator of RpoS" /protein_id="NP_707141.1" /db_xref="GeneID:1024217" /translation="MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDAL ELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGV EDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQEL QPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL LRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLI LVSAGLNATLNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLML SAE" misc_feature 1285308..>1285457 /gene="hnr" /locus_tag="SF1235" /note="phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs); Region: REC; cl19078" /db_xref="CDD:473134" misc_feature 1285386..1286291 /gene="hnr" /locus_tag="SF1235" /note="two-component system response regulator RssB; Region: PRK10693" /db_xref="CDD:182652" gene 1286496..1287404 /gene="galU" /locus_tag="SF1236" /db_xref="GeneID:1024213" CDS 1286496..1287404 /gene="galU" /locus_tag="SF1236" /note="Code: M; COG: COG1210" /codon_start=1 /transl_table=11 /product="UTP-glucose-1-phosphate uridylyltransferase" /protein_id="NP_707142.1" /db_xref="GeneID:1024213" /translation="MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLDEVQSICPPHV TIMQVRQGLAKGLGHAVLCAHPVVGDEPVAVILPDVILDEYESDLSQDNLAEMIRRFD ETGHSQIMVEPVADVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY VLSADIWPLLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF VEYGIRHNTLGTEFKAWLEEEMGIKK" misc_feature 1286496..1287401 /gene="galU" /locus_tag="SF1236" /note="UTP--glucose-1-phosphate uridylyltransferase GalU; Region: PRK13389" /db_xref="CDD:184021" misc_feature order(1286535..1286546,1286586..1286591,1286820..1286822, 1286829..1286840,1286898..1286900,1286904..1286909, 1287027..1287032,1287096..1287101,1287135..1287137, 1287219..1287221) /gene="galU" /locus_tag="SF1236" /note="active site" /db_xref="CDD:133021" misc_feature order(1286547..1286549,1286556..1286570,1286574..1286582, 1286592..1286600,1286604..1286612,1286622..1286624, 1286694..1286696,1286700..1286708,1286712..1286714, 1286724..1286729,1286814..1286819,1286823..1286825, 1286829..1286831,1287024..1287026,1287207..1287209, 1287279..1287281,1287297..1287305,1287309..1287317, 1287321..1287329,1287336..1287341) /gene="galU" /locus_tag="SF1236" /note="tetramer interface [active]" /db_xref="CDD:133021" gene complement(1287548..1287961) /gene="hns" /locus_tag="SF1237" /db_xref="GeneID:1023363" CDS complement(1287548..1287961) /gene="hns" /locus_tag="SF1237" /note="Code: R; COG: COG2916" /codon_start=1 /transl_table=11 /product="global DNA-binding transcriptional dual regulator H-NS" /protein_id="NP_707143.1" /db_xref="GeneID:1023363" /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSLAAVKSGTKAKRAQRPAKYSYVDE NGETKTWTGQGRTPAVIKKAMDEQGKSLDDFLIKQ" misc_feature complement(1287557..1287961) /gene="hns" /locus_tag="SF1237" /note="DNA-binding transcriptional regulator H-NS; Region: PRK10947" /db_xref="CDD:182858" gene 1288566..1289183 /gene="tdk" /locus_tag="SF1238" /db_xref="GeneID:1024199" CDS 1288566..1289183 /gene="tdk" /locus_tag="SF1238" /note="Code: F; COG: COG1435" /codon_start=1 /transl_table=11 /product="thymidine kinase" /protein_id="NP_707144.1" /db_xref="GeneID:1024199" /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF GAGKVSSRIGLSSPAKLFNQNSSLFDEIRAEHEQQAIHCVLVDECQFLTRQQVYELSE VVDQLDIPVLCYGLRTDFRGELFIGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQA GRPYNEGEQVVIGGNERYVSVCRKHYKEALQVGSLTAIQERHRHD" misc_feature 1288566..1289135 /gene="tdk" /locus_tag="SF1238" /note="thymidine kinase; Provisional; Region: PRK04296" /db_xref="CDD:235272" mobile_element complement(1289455..1290882) /mobile_element_type="insertion sequence:IS4" gene complement(1289469..1290815) /locus_tag="SF1239" /db_xref="GeneID:1024206" CDS complement(1289469..1290815) /locus_tag="SF1239" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_707145.1" /db_xref="GeneID:1024206" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRERAFPRVVKERPWKYPTAPKKSQSVA" misc_feature complement(1289727..1290725) /locus_tag="SF1239" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene complement(1290923..1293598) /gene="adhE" /locus_tag="SF1240" /db_xref="GeneID:1024221" CDS complement(1290923..1293598) /gene="adhE" /locus_tag="SF1240" /codon_start=1 /transl_table=11 /product="bifunctional acetaldehyde-CoA/alcohol dehydrogenase" /protein_id="NP_707146.1" /db_xref="GeneID:1024221" /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAE PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKDATNKAADIVLQAAIAA GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFATHGGYLLQG KELKAVQDVILKNGALNAAIVGQPAYKIAELAGFSVPENTKILIGEVTVVDESEPFAH EKLSPTLAMYRAKDFEDAVEKAEKLVAMGGIGHTSCLYTDQDNQPARVSYFGQKMKTA RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV ETEVFFEVEADPTLSIVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLAD YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHAMEAYVSVLASEFSDGQALQALKLL KEYLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL LAWLETLKAELGIPKSIREAGVQEADFLANVDKLSEDAFDDQCTGANPRYPLISELKQ ILLDTYYGRDYVEDETAAKKEAAPAKAEKKAKKSA" misc_feature complement(1291013..1293598) /gene="adhE" /locus_tag="SF1240" /note="bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional; Region: PRK13805" /db_xref="CDD:237515" gene 1294075..1294722 /gene="ychE" /locus_tag="SF1241" /db_xref="GeneID:1024165" CDS 1294075..1294722 /gene="ychE" /locus_tag="SF1241" /note="Code: S; COG: COG2095" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707147.2" /db_xref="GeneID:1024165" /translation="MIQTLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTAAARN KTNLTANLSVAIILWISLFLGDTILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED KQNKQEKSETAVRESIGVVPLALPLMAGPGAISSTIVWGTRYHSISYLFGFFVAIALF ALCCWGLFRMAPWLVRVLRQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN" misc_feature 1294078..1294719 /gene="ychE" /locus_tag="SF1241" /note="YchE family NAAT transporter; Region: PRK11111" /db_xref="CDD:236850" mobile_element complement(1295074..1295841) /mobile_element_type="insertion sequence:IS1" gene complement(1295089..1295484) /gene="insB" /locus_tag="SF1242" /db_xref="GeneID:1024176" CDS complement(1295089..1295484) /gene="insB" /locus_tag="SF1242" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707148.1" /db_xref="GeneID:1024176" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1295092..1295481) /gene="insB" /locus_tag="SF1242" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1295511..1295786) /gene="insA" /locus_tag="SF1243" /db_xref="GeneID:1024210" CDS complement(1295511..1295786) /gene="insA" /locus_tag="SF1243" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707149.1" /db_xref="GeneID:1024210" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1295514..1295765) /gene="insA" /locus_tag="SF1243" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1296237..1297868 /gene="oppA" /locus_tag="SF1244" /db_xref="GeneID:1024192" CDS 1296237..1297868 /gene="oppA" /locus_tag="SF1244" /note="Code: EP; COG: COG0747" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter substrate-binding protein OppA" /protein_id="NP_707150.2" /db_xref="GeneID:1024192" /translation="MTNITKRSLVAAGVLAALMAGNVALAADVPAGVTLAEKQTLVRN NGSEVQSLDPHKIEGVPESNISRDLFEGLLVSDLDGHPAPGVAESWDNKDAKVWTFHL RKDAKWSDGTPVTAQDFVYSWQRSVDPNTASPYASYLQYGHIAGIDEILEGKKPITDL GVKAIDDHTLEVTLSEPVPYFYKLLVHPSTSPVPKAAIEKFGEKWTQPGNIVTNGAYT LKDWVVNERIVLERSPTYWNNAKTVINQVTYLPIASEVTDVNRYRSGEIDMTYNNMPI ELFQKLKKEIPDEVHVDPYLCTYYYEINNQKPPFNDVRVRTALKLGMDRDIIVNKVKA QGDMPAYGYTPPYTDGAKLTQPEWFGWSQEKRNEEAKKLLAEAGYTADKPLTINLRYN TSDLHKKLAIAASSLWKKNIGVNVKLVNQEWKTFLDTRHQGTFDVARAGWCADYNEPT SFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAQRTALYTKAEQQLDKDSAIVPV YYYVNARLVKPWVGGYTGKDPLDNTYTRNMYIVKH" misc_feature 1296237..1297865 /gene="oppA" /locus_tag="SF1244" /note="oligopeptide ABC transporter substrate-binding protein OppA; Provisional; Region: PRK15104" /db_xref="CDD:185059" gene 1297954..1298874 /gene="oppB" /locus_tag="SF1245" /db_xref="GeneID:1024214" CDS 1297954..1298874 /gene="oppB" /locus_tag="SF1245" /note="Code: EP; COG: COG0601" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter permease OppB" /protein_id="NP_707151.1" /db_xref="GeneID:1024214" /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERTLPPE VMANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYSVNDLVASSFPVSAKLGA AAFFLAVILGVSAGVIAALKQNTKWDYTVMGLAMTGVVIPSFVVAPLLVMIFAIILHW LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR IILRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL SLTILVGALTILFNAIVDVLYAVIDPKIRY" misc_feature 1297954..1298871 /gene="oppB" /locus_tag="SF1245" /note="oligopeptide ABC transporter permease OppB; Region: oppB; PRK09471" /db_xref="CDD:181886" gene 1298889..1299797 /gene="oppC" /locus_tag="SF1246" /db_xref="GeneID:1024204" CDS 1298889..1299797 /gene="oppC" /locus_tag="SF1246" /note="Code: EP; COG: COG1173" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter permease OppC" /protein_id="NP_707152.1" /db_xref="GeneID:1024204" /translation="MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLI VLVLIALFVILAPMLSQFAYDDTDWAMMSSAPDMESGHYFGTDSSGRDLLVRVAIGGR ISLMVGVAAALVAVVVGTLYGSLSGYLGGKVDSVMMRLLEILNSFPFMFFVILLVTFF GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTPGIVIRHIVPNV LGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPA GFLVVTLFCFNFIGDGLRDALDPKDR" misc_feature 1298889..1299794 /gene="oppC" /locus_tag="SF1246" /note="oligopeptide ABC transporter permease OppC; Provisional; Region: PRK15406" /db_xref="CDD:185304" gene 1299809..1300822 /gene="oppD" /locus_tag="SF1247" /db_xref="GeneID:1024219" CDS 1299809..1300822 /gene="oppD" /locus_tag="SF1247" /note="Code: EP; COG: COG0444" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter ATP-binding protein OppD" /protein_id="NP_707153.1" /db_xref="GeneID:1024219" /translation="MSVIETATVPLAQQQADALLNVKDLRVTFSTPDGDVTAVNDLNF SLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPERELNKLR AEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKNMSKAEAFEESVRMLDAVKMPEARK RMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPVHPYSIGLLNAVPRLD AEGETMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICSSAPPLEEFTPGRLRACFKPVE ELL" misc_feature 1299830..1300816 /gene="oppD" /locus_tag="SF1247" /note="oligopeptide transporter ATP-binding component; Provisional; Region: oppD; PRK09473" /db_xref="CDD:181888" gene 1300819..1301823 /gene="oppF" /locus_tag="SF1248" /db_xref="GeneID:1024196" CDS 1300819..1301823 /gene="oppF" /locus_tag="SF1248" /note="Code: EP; COG: COG1124" /codon_start=1 /transl_table=11 /product="oligopeptide ABC transporter ATP-binding protein OppF" /protein_id="NP_707154.1" /db_xref="GeneID:1024196" /translation="MNAVTEGRKVLLEIADLKVHFEIKDGKQWFWQPPKTLKAVDGVT LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGHVAWLGKELLGMKPDEWRAVRSD IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKMSRQEVRERVKAMMLKVGLLPNLINR YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTRALMSAVPIPDPDLE KNKTIQLLEGELPSPINPPSGCVFRTRCPIAGPECAKTRPVLEGSFRHAVSCLKVDPL " misc_feature 1300828..1301820 /gene="oppF" /locus_tag="SF1248" /note="oligopeptide ABC transporter ATP-binding protein OppF; Provisional; Region: PRK15079" /db_xref="CDD:185037" misc_feature 1300987..1301010 /gene="oppF" /locus_tag="SF1248" /note="Walker A/P-loop; other site" /db_xref="CDD:213224" misc_feature order(1300996..1301001,1301005..1301013,1301140..1301142, 1301383..1301388,1301485..1301487) /gene="oppF" /locus_tag="SF1248" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213224" misc_feature 1301131..1301142 /gene="oppF" /locus_tag="SF1248" /note="Q-loop/lid; other site" /db_xref="CDD:213224" misc_feature 1301311..1301340 /gene="oppF" /locus_tag="SF1248" /note="ABC transporter signature motif; other site" /db_xref="CDD:213224" misc_feature 1301371..1301388 /gene="oppF" /locus_tag="SF1248" /note="Walker B; other site" /db_xref="CDD:213224" misc_feature 1301395..1301406 /gene="oppF" /locus_tag="SF1248" /note="D-loop; other site" /db_xref="CDD:213224" misc_feature 1301473..1301493 /gene="oppF" /locus_tag="SF1248" /note="H-loop/switch region; other site" /db_xref="CDD:213224" gene complement(1301876..1302283) /locus_tag="SF1249" /db_xref="GeneID:1024245" CDS complement(1301876..1302283) /locus_tag="SF1249" /note="Code: S; COG: COG3099" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707155.4" /db_xref="GeneID:1024245" /translation="MSPSDCFTSSARCCKTSPTEVKQVVTMDMDLNNRLTEDETLEQA YDIFLELAADNLDPADVLLFNLQFEERGGAELFDPAEDWQEHVDFDLNPDFFAEVVIG LTDSEDGEISDVFARILLCREKDHKLCHIIWRE" misc_feature complement(1301879..1302199) /locus_tag="SF1249" /note="dsDNA-mimic protein; Reviewed; Region: PRK05094" /db_xref="CDD:179934" gene complement(1302240..1303700) /gene="cls" /locus_tag="SF1250" /db_xref="GeneID:1024195" CDS complement(1302240..1303700) /gene="cls" /locus_tag="SF1250" /note="Code: I; COG: COG1502" /codon_start=1 /transl_table=11 /product="cardiolipin synthetase" /protein_id="NP_707156.1" /db_xref="GeneID:1024195" /translation="MTTVYTLVSWLAILGYWLLIAGVTLRILMKRRAVPSAMAWLLII YILPLVGIIAYLAVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAEENSSVAAP LFKLCERRQGIAGVKGNQLQLMTESDDVMQALIRDIQLARHNIEMVFYIWQPGGMADQ VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWPELMRNAGIEVVEALKVNLMRVFLRR MDLRQHRKMIMIDNYIAYTGSMNMVDPRYFKQDAGVGQWIDLMARMEGPIATAMGIIY SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTAAYSAH EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSMLVGWASRAFFTELLAAG VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLAIDDKGFGADLAAVQ DDYISRSRLLDARLWLKRPLWQRVAERLFYFFSPLL" misc_feature complement(1302243..1303688) /gene="cls" /locus_tag="SF1250" /note="cardiolipin synthetase; Reviewed; Region: cls; PRK01642" /db_xref="CDD:234967" gene complement(1304071..1305324) /gene="kch" /locus_tag="SF1251" /db_xref="GeneID:1024193" CDS complement(1304071..1305324) /gene="kch" /locus_tag="SF1251" /note="Code: P; COG: COG1226" /codon_start=1 /transl_table=11 /product="voltage-gated potassium channel" /protein_id="NP_707157.2" /db_xref="GeneID:1024193" /translation="MSHWATFKQTATNLWVTLRHDILALAVFLNGLLIFKTIYGMSVN LLDIFHIKAFSELDLSLLANAPLFMLGVFLVLNSIGLLFRAKLAWAISIILLLIALIY TLHFYPWLKFSIGFCIFTLVFLLILRKDFSHSSAAAGTIFAFISFTTLLFYSTYGALY LSEGFNPRIESLMTAFYFSIETMSTVGYGDIVPVSESARLFTISVIISGITVFATSMT SIFGPLIRGGFNKLLKGNNHTMHRKDHFIVCGHSILAINTILQLNQRGQNVTVISNLP EDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVLSAKD MSSDVKTVLAVSDSKNLNKIKMVHPDIILSPQLFGSEILARVLNGEEINNDMLVSMLL NSGHGIFSDNDEQETKADSKESAQK" misc_feature complement(1304119..1305318) /gene="kch" /locus_tag="SF1251" /note="voltage-gated potassium channel protein; Region: PRK10537" /db_xref="CDD:236711" mobile_element 1305623..1306886 /mobile_element_type="insertion sequence:IS600" gene 1305687..1305989 /locus_tag="SF1252" /db_xref="GeneID:1026318" CDS 1305687..1305989 /locus_tag="SF1252" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707158.1" /db_xref="GeneID:1026318" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 1305687..1305959 /locus_tag="SF1252" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1306130..1306843 /locus_tag="SF1253" /db_xref="GeneID:1027802" CDS 1306130..1306843 /locus_tag="SF1253" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 integrase core domain-containing protein" /protein_id="NP_707159.1" /db_xref="GeneID:1027802" /translation="MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQ KRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYT CEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGL KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHS RLGNISPATFREKYHQMAA" misc_feature <1306130..1306816 /locus_tag="SF1253" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1306891..1307187) /gene="yciI" /locus_tag="SF1254" /db_xref="GeneID:1024209" CDS complement(1306891..1307187) /gene="yciI" /locus_tag="SF1254" /note="Code: S; COG: COG2350" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707160.4" /db_xref="GeneID:1024209" /translation="MLYVIYAQDKADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP AVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKVF" misc_feature complement(1306894..1307187) /gene="yciI" /locus_tag="SF1254" /note="YciI family protein; Region: PRK11370" /db_xref="CDD:183103" gene 1307402..1308130 /gene="tonB" /locus_tag="SF1255" /db_xref="GeneID:1024200" CDS 1307402..1308130 /gene="tonB" /locus_tag="SF1255" /note="Code: M; COG: COG0810" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707161.2" /db_xref="GeneID:1024200" /translation="MTSITLDLPRRFPWPTLLSVCIHGAVVAGLLYTSVHQVIELPAP AQPISVTMVAPADLEPPQAVQPPPEPVVEPEPEPEPIPEPPKEAPVVIEKPKPKPKPK PKPVKKVQEQPKRDVKPVESRPASPFENTAPARPTSSTATAATSKPVTSVASGPRALS RNQPQYPARAQALRIEGQVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRY EPGKPGSGIVVNILFKINGTTEIQ" misc_feature 1307402..1308127 /gene="tonB" /locus_tag="SF1255" /note="transport protein TonB; Provisional; Region: PRK10819" /db_xref="CDD:236768" gene complement(1308170..1308568) /gene="yciA" /locus_tag="SF1256" /db_xref="GeneID:1024202" CDS complement(1308170..1308568) /gene="yciA" /locus_tag="SF1256" /note="Code: I; COG: COG1607" /codon_start=1 /transl_table=11 /product="acyl-CoA thioesterase" /protein_id="NP_707162.1" /db_xref="GeneID:1024202" /translation="MSTTHNVPQGDLVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVQKGTTSVSINIEVWVKKVASE PIGQRYKATEALFKYVAVDPEGKPRALPVE" misc_feature complement(1308173..1308568) /gene="yciA" /locus_tag="SF1256" /note="acyl-CoA thioester hydrolase YciA; Region: PRK10694" /db_xref="CDD:236736" gene complement(1308673..1309212) /gene="yciB" /locus_tag="SF1257" /db_xref="GeneID:1024246" CDS complement(1308673..1309212) /gene="yciB" /locus_tag="SF1257" /note="Code: D; COG: COG2917" /codon_start=1 /transl_table=11 /product="intracellular septation protein A" /protein_id="NP_707163.1" /db_xref="GeneID:1024246" /translation="MKQFLDFLPLVVFFAFYKIYDIYAATAALIVATAIVLIYSWVRF RKVEKMALITFVLVVVFGGLTLFFHNDEFIKWKVTVIYALFAGALLVSQWVMKKPLIQ RMLSKELTLPQPVWSKLNLAWAVFFILCGLANIYIAFWLPQNIWVNFKVFGLTALTLI FTLLSGIYIYRHMPQEDKS" misc_feature complement(1308676..1309212) /gene="yciB" /locus_tag="SF1257" /note="intracellular septation protein A; Reviewed; Region: PRK00259" /db_xref="CDD:234704" gene complement(1309242..1309985) /gene="yciC" /locus_tag="SF1258" /db_xref="GeneID:1024190" CDS complement(1309242..1309985) /gene="yciC" /locus_tag="SF1258" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707164.2" /db_xref="GeneID:1024190" /translation="MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPS DAQLAQLNDGVPVSGSSGLFDLVQNMSPEQQQILLQASAASTFSELIGNAILAGGVIL IIQLVSAGQRVSALRAIGASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLAL APVMLVQDKMGIFASMRSSMRLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEI GAVLANTLSNLISAILLIYLFRLYMLIRQ" misc_feature complement(1309245..1309976) /gene="yciC" /locus_tag="SF1258" /note="hypothetical protein; Provisional; Region: PRK02868" /db_xref="CDD:235080" gene 1310342..1310980 /gene="yciD" /locus_tag="SF1259" /db_xref="GeneID:1024208" CDS 1310342..1310980 /gene="yciD" /locus_tag="SF1259" /note="Code: M; COG: COG3047" /codon_start=1 /transl_table=11 /product="outer membrane protein W" /protein_id="NP_707165.1" /db_xref="GeneID:1024208" /translation="MKKLTVAALAVTTLLSGSAFAHEAGEFFMRAGSATVRPTEGAGG TLGSLGGFSVTNNTQLGLTFTYMATDNIGVELLAATPFRHKIGTRATGDIATVHHLPP TLMAQWYFGDASSKFRPYVGAGINYTTFFDNGFNDHGKEAGLSDLSLKDSWGAAGQVG VDYLINRDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRLDPWVFMFSAGYRF" misc_feature 1310342..1310977 /gene="yciD" /locus_tag="SF1259" /note="outer membrane protein W; Provisional; Region: PRK10959" /db_xref="CDD:182867" gene complement(1311040..1311546) /gene="yciE" /locus_tag="SF1260" /db_xref="GeneID:1024212" CDS complement(1311040..1311546) /gene="yciE" /locus_tag="SF1260" /note="Code: S; COG: COG3685" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707166.1" /db_xref="GeneID:1024212" /translation="MNRIEHYHDWLRDAHAMEKQAESMLESMASRIDNYPELRARIEQ HLSETKNQIVQLETILDRNDISRSVIKDSMSKMAALGQSIGGIFPSDEIVKGSIGGYV FEQFEITCYTSLLAAAKNAGDTVSIPIIEAILNEEKQMADWLIQHIPQTTEKFLIRSE TDGVEAKK" misc_feature complement(1311079..1311534) /gene="yciE" /locus_tag="SF1260" /note="Domain of unknown function (DUF892); Region: DUF892; pfam05974" /db_xref="CDD:428701" misc_feature complement(order(1311127..1311129,1311136..1311138, 1311235..1311237,1311391..1311393,1311400..1311402, 1311493..1311495)) /gene="yciE" /locus_tag="SF1260" /note="dinuclear metal binding motif [ion binding]; other site" /db_xref="CDD:153118" gene complement(1311592..1312092) /gene="yciF" /locus_tag="SF1261" /db_xref="GeneID:1024201" CDS complement(1311592..1312092) /gene="yciF" /locus_tag="SF1261" /note="Code: S; COG: COG3685" /codon_start=1 /transl_table=11 /product="structural protein" /protein_id="NP_707167.2" /db_xref="GeneID:1024201" /translation="MNMKTIEDVFIQLLSDTYSAEKQLTRALAKLARATSNEKLSQAF HAHLEETHGQIERIDQVVESESNLKIKRMKCVAMEGLIEEANEVIESTEKNEVRDAAL IAAAQKVEHYEIASYGTLATLAEQLGYRKAAKLLKETLEEEKATDIKLTDLALNNVNK KAENKA" misc_feature complement(1311595..1312092) /gene="yciF" /locus_tag="SF1261" /note="Ferritin-like metal-binding protein YciE [Inorganic ion transport and metabolism]; Region: YciE; COG3685" /db_xref="CDD:442901" gene complement(1312178..1312414) /gene="yciG" /locus_tag="SF1262" /db_xref="GeneID:1023362" CDS complement(1312178..1312414) /gene="yciG" /locus_tag="SF1262" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707168.1" /db_xref="GeneID:1023362" /translation="MSTHNTHINETMQRNGRNNMAEHRGSSGNFAEDREKASDAGRKG GQHSGGNFKNDPQRASEAGKKGGQQSGGNKSGKS" misc_feature complement(<1312229..1312339) /gene="yciG" /locus_tag="SF1262" /note="General stress protein YciG, contains tandem KGG domains [General function prediction only]; Region: GsiB; COG3729" /db_xref="CDD:442943" gene complement(1312737..1313543) /gene="trpA" /locus_tag="SF1263" /db_xref="GeneID:1024231" CDS complement(1312737..1313543) /gene="trpA" /locus_tag="SF1263" /note="Code: E; COG: COG0159" /codon_start=1 /transl_table=11 /product="tryptophan synthase subunit alpha" /protein_id="NP_707169.1" /db_xref="GeneID:1024231" /translation="MERYESLFAQLKERKEGAFVPFVTLGDPGIEQSLKIIDTLIEAG ADALELGIPFSDPLADGPTIQNATLRAFAAGVTPAQCFEMLALIRQKHPTIPIGLLMY ANLVFNKGIDEFYAQCEKVGVDSVLVADVPVEESAPFRQAALRHNVAPIFICPPNADD DLLRQIASYGRGYTYLLSRAGVTGAENRAALPLNHLVAKLKEYNAAPPLQGFGISAPD QVKAAIDAGAAGAISGSAIVKIIEQHINEPEKMLAALKVFVQPMKAATRS" misc_feature complement(1312755..1313522) /gene="trpA" /locus_tag="SF1263" /note="tryptophan synthase, alpha subunit; Region: trpA; TIGR00262" /db_xref="CDD:161792" misc_feature complement(order(1312839..1312844,1312905..1312910, 1312992..1312997,1313019..1313021,1313352..1313354, 1313364..1313366,1313397..1313399)) /gene="trpA" /locus_tag="SF1263" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:240075" misc_feature complement(order(1312995..1312997,1313238..1313240, 1313364..1313366,1313397..1313399)) /gene="trpA" /locus_tag="SF1263" /note="active site" /db_xref="CDD:240075" misc_feature complement(order(1313238..1313240,1313364..1313366, 1313397..1313399)) /gene="trpA" /locus_tag="SF1263" /note="catalytic residues [active]" /db_xref="CDD:240075" misc_feature complement(order(1313058..1313060,1313067..1313075, 1313079..1313081,1313139..1313141,1313148..1313150, 1313154..1313159,1313223..1313225,1313232..1313234, 1313346..1313351,1313358..1313360,1313367..1313369, 1313373..1313384)) /gene="trpA" /locus_tag="SF1263" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:240075" gene complement(1313543..1314736) /gene="trpB" /locus_tag="SF1264" /db_xref="GeneID:1024191" CDS complement(1313543..1314736) /gene="trpB" /locus_tag="SF1264" /note="Code: E; COG: COG0133" /codon_start=1 /transl_table=11 /product="tryptophan synthase subunit beta" /protein_id="NP_707170.1" /db_xref="GeneID:1024191" /translation="MTTLLNPYFGEFGGMYVPQILMPALRQLEEAFVSAQKDPEFQAQ FNDLLKNYAGRPTALTKCQNITAGTNTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG KTEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILE REGRLPDAVIACVGGGSNAIGMFADFINETNVGLIGVEPGGHGIETGEHGAPLKHGRV GIYFGMKAPMMQTEDGQIEESYSISAGLDFPSVGPQHAYLNSTGRADYVSITDDEALE AFKTLCLHEGIIPALESSHALAHALKMMRENPDKEQLLVVNLSGRGDKDIFTVHDILK ARGEI" misc_feature complement(1313564..1314724) /gene="trpB" /locus_tag="SF1264" /note="tryptophan synthase subunit beta; Validated; Region: PRK04346" /db_xref="CDD:235288" misc_feature complement(order(1313606..1313608,1313687..1313689, 1314029..1314043,1314167..1314169,1314395..1314397, 1314476..1314481)) /gene="trpB" /locus_tag="SF1264" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107207" misc_feature complement(1314476..1314478) /gene="trpB" /locus_tag="SF1264" /note="catalytic residue [active]" /db_xref="CDD:107207" gene complement(1314748..1316109) /gene="trpC" /locus_tag="SF1265" /db_xref="GeneID:1024227" CDS complement(1314748..1316109) /gene="trpC" /locus_tag="SF1265" /codon_start=1 /transl_table=11 /product="bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase" /protein_id="NP_707171.1" /db_xref="GeneID:1024227" /translation="MMQTVLAKIVADKAIWVETRKQQQPLASFQNEVQPSTRHFYDAL QGARTAFILECKKASPSKGVIRDDFDPARIAAIYKHYASAISVLTDEKYFQGSFDFLL IVSQIAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMG VLTEVSNEEELERAIALGAKVVGINNRDLRDLSIDLNRTRELAPKLGHNVTVISESGI NTYAQVRELSHFANGFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAG AIYGGLIFVATSPRCVNVEQAQEVMAAAPLQYVGVFRNHDIADVVDKAKVLSLAAVQL HGNEDQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQRFDW SLLNGQSLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDARLLASVFQTL RAY" misc_feature complement(1314751..1316109) /gene="trpC" /locus_tag="SF1265" /note="bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF; Region: PRK09427" /db_xref="CDD:236509" gene complement(1316110..1317705) /gene="trpD" /locus_tag="SF1266" /db_xref="GeneID:1024238" CDS complement(1316110..1317705) /gene="trpD" /locus_tag="SF1266" /note="Code: E; COG: COG0547" /codon_start=1 /transl_table=11 /product="bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase" /protein_id="NP_707172.1" /db_xref="GeneID:1024238" /translation="MADILLLDNIDSFTYNLADQLRSNGHNVVIYRNHIPAQTLIERL ATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG EILHGKASSIEHDGQAMFAGLTNPLPVARYHSLVGSNIPAGLTINAHFNGMVMAVRHD ADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPANTLQPILEKLYQAQTLSQQES HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPDYLFADI VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAN KSRQALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGKIKSYQLTAEDF GLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGHEDLQANA QTVLEVLRSGSAYDRVTALAARG" misc_feature complement(1316113..1317705) /gene="trpD" /locus_tag="SF1266" /note="bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD; Region: PRK09522" /db_xref="CDD:181927" gene complement(1317705..1319267) /gene="trpE" /locus_tag="SF1267" /db_xref="GeneID:1024203" CDS complement(1317705..1319267) /gene="trpE" /locus_tag="SF1267" /note="Code: EH; COG: COG0147" /codon_start=1 /transl_table=11 /product="anthranilate synthase component I" /protein_id="NP_707173.1" /db_xref="GeneID:1024203" /translation="MQTQKPTLELLTCEGAYRDNPTALFHQLCGNRPATLLLESADID SKDDLKSLLLIDSALRITALGDTVTIQALSGNGEALLALLDNALPAGVESEQSPNCRV LRFPPVSPLLDEDARLCSLSVFDAFRLLQNLLNVPKEEREAMFFGGLFSYDLVAGFED LPQLSAENNCPDFCFYLAETLMVIDHQKKSTRIQASLFAPNEEEKQRLTARLNELRQQ LTEAAPPLPVVSVPHMRCECNQSDEEFGGVVRLLQKAIRAGEIFQVVPSRRFSLPCPS PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDATSRQIEIYPIAGTRPRGR RADGSLDRDLDSRIELEMRTDHKELSEHLMLVDLARNDLARICTPGSRYIADLTKVDR YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIAEAEGRRRGSYG GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGVVLDSVPQSEADETRNKARAVLR AIATAHHAQETF" misc_feature complement(1317708..1319267) /gene="trpE" /locus_tag="SF1267" /note="anthranilate synthase component 1; Region: PRK13564" /db_xref="CDD:237428" gene 1319650..1320450 /gene="yciV" /locus_tag="SF1269" /db_xref="GeneID:1024234" CDS 1319650..1320450 /gene="yciV" /locus_tag="SF1269" /note="Code: R; COG: COG0613" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707175.1" /db_xref="GeneID:1024234" /translation="MVHRAVEMRVGTLAITDHDTTAAIAPAREEISRSGLALNLIPGV EISTVWENHEIHIVGLNIDITHPLMCEFLAQQTERRNQRAQQIAERLEKAQIPGALEG AQRLAQGGAVTRGHFARFLVECGKASSMADVFKKYLARGKTGYVPPQWCTIEQAIDVI HHSGGKAVLAHPGRYNLSAKWLKRLVAHFAEHHGDAMEVAQCQQSPNERTQLATLARQ HHLWASQGSDFHQPCPWIELGRKLWLPAGVEGVWQLWEQPQNTTEREL" misc_feature 1319650..1320357 /gene="yciV" /locus_tag="SF1269" /note="5'-3' exoribonuclease TrpH/YciV (RNase AM), contains PHP domain [Nucleotide transport and metabolism]; Region: YciV; COG0613" /db_xref="CDD:440378" gene 1320411..1321067 /gene="yciO" /locus_tag="SF1270" /db_xref="GeneID:1024232" CDS 1320411..1321067 /gene="yciO" /locus_tag="SF1270" /note="Code: J; COG: COG0009" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707176.1" /db_xref="GeneID:1024232" /translation="MGTAAEHHREGIMSQFFYIHPDNPQQRLINQAVEIVRKGGVIVY PTDSGYALGCKIEDKNAMERICRIRQLPDGHNFTLMCRDLSELSTYSFVDNVAFRLMK NNTPGNYTFILKGTKEVPRRLLQEKRKTIGMRVPSNPIAQALLEALGEPMLSTSLMLP GSEFTESDPEEIKDRLEKQVDLIIHGGYLGQKPTTVIDLTDDTPVVVREGVGDVKPFL " misc_feature 1320447..1321064 /gene="yciO" /locus_tag="SF1270" /note="threonylcarbamoyl-AMP synthase; Region: PRK11630" /db_xref="CDD:183245" gene 1321168..1322004 /gene="yciL" /locus_tag="SF1271" /pseudo /db_xref="GeneID:1024244" misc_feature 1321168..1322004 /gene="yciL" /locus_tag="SF1271" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787524 (292 aa). BLAST with identity of 98% in 279 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1322051..1322641) /gene="btuR" /locus_tag="SF1272" /db_xref="GeneID:1024239" CDS complement(1322051..1322641) /gene="btuR" /locus_tag="SF1272" /note="Code: H; COG: COG2109" /codon_start=1 /transl_table=11 /product="cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase" /protein_id="NP_707177.1" /db_xref="GeneID:1024239" /translation="MSDERYQQRQQRVKEKVDARVAQAQDERGIIIVFTGNGKGKTTA AFGTATRAVGHGKKVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWDTQNRESDT AACREVWQHAKRMLADSSLDMVLLDELTYMVAYDYLPLEEVVQALNERPHQQTVIITG RGCHRDILELADTVSELRPIRHAFDAGVKAQIGIDY" misc_feature complement(1322054..1322623) /gene="btuR" /locus_tag="SF1272" /note="cob(I)yrinic acid a,c-diamide adenosyltransferase; Region: PRK05986" /db_xref="CDD:235662" misc_feature complement(order(1322054..1322062,1322066..1322071, 1322075..1322083,1322090..1322095,1322099..1322101, 1322108..1322131,1322135..1322140,1322177..1322179, 1322414..1322419,1322423..1322428,1322432..1322434, 1322477..1322494,1322498..1322503,1322513..1322515, 1322525..1322527,1322558..1322560)) /gene="btuR" /locus_tag="SF1272" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:410862" misc_feature complement(order(1322057..1322059,1322096..1322098, 1322159..1322161,1322258..1322260,1322489..1322491, 1322513..1322533)) /gene="btuR" /locus_tag="SF1272" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:410862" misc_feature complement(order(1322090..1322092,1322159..1322161, 1322237..1322239,1322249..1322251,1322363..1322365, 1322435..1322437,1322444..1322446)) /gene="btuR" /locus_tag="SF1272" /note="hydroxycobalamin binding site [chemical binding]; other site" /db_xref="CDD:410862" gene complement(1322638..1323396) /gene="yciK" /locus_tag="SF1273" /db_xref="GeneID:1024233" CDS complement(1322638..1323396) /gene="yciK" /locus_tag="SF1273" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="oxoacyl-(acyl carrier protein) reductase" /protein_id="NP_707178.1" /db_xref="GeneID:1024233" /translation="MHYQPKQDLLNDRIILVTGASDGIGREAAMTYARYGATVILLGR NEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIVVNYPRLDGVLHNAGL LGDVCPMSEQNPQVWQDVMQINVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA NWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAMRASAFPTEDPQKLKTPA DIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGISQ" misc_feature complement(1322659..1323396) /gene="yciK" /locus_tag="SF1273" /note="putative oxoacyl-(acyl carrier protein) reductase; Provisional; Region: PRK08945" /db_xref="CDD:236357" misc_feature complement(order(1322791..1322796,1322800..1322802, 1322806..1322817,1322890..1322892,1322902..1322904, 1322941..1322949,1323028..1323030,1323094..1323102, 1323181..1323192,1323265..1323267,1323325..1323336, 1323340..1323342)) /gene="yciK" /locus_tag="SF1273" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187599" misc_feature complement(order(1322848..1322856,1322860..1322868, 1322872..1322880,1322884..1322889,1322896..1322901, 1322908..1322910,1322914..1322928,1322989..1322991, 1322998..1323000,1323007..1323012,1323019..1323024, 1323031..1323036,1323043..1323048,1323055..1323057, 1323061..1323075)) /gene="yciK" /locus_tag="SF1273" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187599" misc_feature complement(order(1322890..1322892,1322902..1322904, 1322941..1322943,1323025..1323027)) /gene="yciK" /locus_tag="SF1273" /note="active site" /db_xref="CDD:187599" gene 1323616..1324665 /gene="sohB" /locus_tag="SF1274" /db_xref="GeneID:1024236" CDS 1323616..1324665 /gene="sohB" /locus_tag="SF1274" /note="Code: NO; COG: COG0616" /codon_start=1 /transl_table=11 /product="inner membrane peptidase" /protein_id="NP_707179.1" /db_xref="GeneID:1024236" /translation="MELLSEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRV NNLSEQYKEMKEELAAALMDSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPR VWVLDFKGSMDAHEVNSLREEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQR LRDKNIPLTVTVDKVAASGGYMMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKD IDIELHTAGQYKRTLTLLGENTEEGREKFREELNETHQLFKDFVKRMRPSLDIEQVAT GEHWYGQQAVEKGLVDEINTSDEVILSLMEGREVVNVRYMQRKRLIDRFTGSAAESAD RLLLRWWQRGQKPLM" misc_feature 1323622..1324638 /gene="sohB" /locus_tag="SF1274" /note="putative inner membrane peptidase; Provisional; Region: PRK11778" /db_xref="CDD:236978" gene complement(1324701..1324952) /gene="yciN" /locus_tag="SF1275" /db_xref="GeneID:1024241" CDS complement(1324701..1324952) /gene="yciN" /locus_tag="SF1275" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707180.1" /db_xref="GeneID:1024241" /translation="MNKETQPIDRETLLKEANKIIREHEDTLAGIEATGVTQRNGVLV FTGDYFLDEQGLPTAKSTAVFNMFKHLAHVLSEKYHLVD" misc_feature complement(1324704..1324952) /gene="yciN" /locus_tag="SF1275" /note="hypothetical protein; Provisional; Region: PRK11037" /db_xref="CDD:182919" gene 1325332..1327929 /gene="topA" /locus_tag="SF1276" /db_xref="GeneID:1024248" CDS 1325332..1327929 /gene="topA" /locus_tag="SF1276" /note="Code: L; COG: COG0550" /codon_start=1 /transl_table=11 /product="DNA topoisomerase I subunit omega" /protein_id="NP_707181.2" /db_xref="GeneID:1024248" /translation="MGKALVIVESPAKAKTINKYLGCDYVVKSSVGHIRDLPTSGSAA KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQLAEK ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFNKPGELNID RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE FWEVDASTTTPSGEALALQVTHQNDKPFRPVNKEQTQAAVSLLEKARYSVLEREDKPT TSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM VRGYISDNFGKKYLPESPNQYASKENSQEAHEAIRPSDVNVMAESLKDMEADAQKLYQ LIWRQFVACQMTPAKYDSTTLTVGAGDFRLKARGRILRFDGWTKVMPALRKGDEDRIL PAVHKDHALTLVELTPVHHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMENSLDQVANHEAEWKAVLDH FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL PPKERCKTTINLVPENEVLNVLEGEDAETNALRAKRRCPKCGTAMDSYLIDPKRKLHV CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNEECKNTR KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVE ELYRFRDRLPEKLRYLADAPQQDPEGNKTMVRFSRKTKQQYVSSEKDGRATGWSAFYV DGKWVEGKK" misc_feature 1325335..1327878 /gene="topA" /locus_tag="SF1276" /note="DNA topoisomerase I subunit omega; Validated; Region: PRK07561" /db_xref="CDD:236048" gene 1328139..1329113 /gene="cysB" /locus_tag="SF1277" /db_xref="GeneID:1024223" CDS 1328139..1329113 /gene="cysB" /locus_tag="SF1277" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="transcriptional regulator CysB" /protein_id="NP_707182.1" /db_xref="GeneID:1024223" /translation="MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL GIQIFSRSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHT QARYALPNVIKGFIERYPRVSLHMHQGPPTQIADAVSKGNADFAIATEALHLYEDLVM LPCYHWNRAIVVTPDHPLAGKKAITIEELAQYPLVTYTFGFTGRSELDTAFNRAGLTP RIVFTATDADVIKTYVRLGLGVGVIASMAVDPVADPDLVRVDAHDIFSHSTTKIGFRR STFLRSYMYDFIQRFAPHLTRDVVDAAVALRSNEEIEVMFKDIKLPEK" misc_feature 1328139..1329110 /gene="cysB" /locus_tag="SF1277" /note="HTH-type transcriptional regulator CysB; Region: cysB; PRK12681" /db_xref="CDD:183678" gene 1329408..1329572 /locus_tag="SF1278" /db_xref="GeneID:1024242" CDS 1329408..1329572 /locus_tag="SF1278" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707183.1" /db_xref="GeneID:1024242" /translation="MLISDGDYMRLAMPSGNQEPRRDPELKRKAWLAVFLGSALFWVV VALLIWKVWG" misc_feature 1329444..1329569 /locus_tag="SF1278" /note="YmiA family putative membrane protein; Region: YmiA; NF000536" /db_xref="CDD:333720" gene 1329554..1329742 /gene="yciX" /locus_tag="SF1279" /db_xref="GeneID:1027803" CDS 1329554..1329742 /gene="yciX" /locus_tag="SF1279" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707184.1" /db_xref="GeneID:1027803" /translation="MESVGITMVGQEQLESSPLCQHSDNEPETKRECSVVIPDDWQLT SQQQAFIELFAEDDQPKQ" gene 1330115..1332790 /gene="acnA" /locus_tag="SF1280" /db_xref="GeneID:1024229" CDS 1330115..1332790 /gene="acnA" /locus_tag="SF1280" /note="Code: C; COG: COG1048" /codon_start=1 /transl_table=11 /product="aconitate hydratase 1" /protein_id="NP_707185.1" /db_xref="GeneID:1024229" /translation="MSSTLREASKDTLQAKDKTYHYYSLPLAAKSLGDITRLPKSLKV LLENLLRWQDGNSVTEEDIHALAGWLKNAHADREIAYRPARVLMQDFTGVPAVVDLAA MREAVKRLGGDTAKVNPLSPVDLVIDHSVTVDRFGDDEAFEENVRLEMERNHERYVFL KWGKQAFSRFSVVPPGTGICHQVNLEYLGKAVWSELQDGEWIAYPDTLVGTDSHTTMI NGLGVLGWGVGGIEAEAAMLGQPVSMLIPDVVGFKLTGKLREGITATDLVLTVTQMLR KHGVVGKFVEFYGDGLDSLPLADRATIANMSPEYGATCGFFPIDAVTLDYMRLSGRSE DQVELVEKYAKAQGMWRNPGDEPIFTSMLELDMNDVEASLAGPKRPQDRVALPDVPKA FAASNELKVNATHKDRLPVDYVMNGHQYQLPDGAVVIAAITSCTNTSNPSVLMAAGLL AKKAVTLGLKRQPWVKASLAPGSKVVSDYLAKAKLTPYLDELGFNLVGYGCTTCIGNS GPLPDPIETAIKKGDLTVGAVLSGNRNFEGRIHPLVKTNWLASPPLVVAYALAGNMNI NLASEPIGHDRKGEPVYLKDIWPSAQEIARAVEQVSTEMFRKEYAEVFEGTAEWKEIN VTRSDTYGWQEDSTYIRLSPFFDEMQATPAPVEDIHGARILAMLGDSVTTDHISPAGS IKPDSPAGRYLQGRGVERKDFNSYGSRRGNHEVMMRGTFANIRIRNEMVPGVEGGMTR HLPDSDVVSIYDAAMRYKQEQTPLAVIAGKEYGSGSSRDWAAKGPRLLGIRVVIAESF ERIHRSNLIGMGILPLEFPQGVTRKTLGLTGEEKIDIGDLQNLQPGATVPVTLTRADG SQEVVPCRCRIDTATELTYYQNDGILHYVIRNMLK" misc_feature 1330115..1332787 /gene="acnA" /locus_tag="SF1280" /note="aconitate hydratase AcnA; Region: PRK09277" /db_xref="CDD:236445" gene complement(1332854..1333444) /gene="ribA" /locus_tag="SF1281" /db_xref="GeneID:1024226" CDS complement(1332854..1333444) /gene="ribA" /locus_tag="SF1281" /note="Code: H; COG: COG0807" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase II" /protein_id="NP_707186.2" /db_xref="GeneID:1024226" /translation="MQLKRVAEAKLPTPWGDFLMVGFEELATGHDHVALVYGDISGHT PVLARVHSECLTGDALFSLRCDCGFQLEAALTQIAEEGRGILLYHRQEGRNIGLLNKI RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVNEVRLLTNNPKKVEILTE AGINIVERVPLIVGRNPNNEHYLDTKAEKMGHLLNK" misc_feature complement(1332857..1333444) /gene="ribA" /locus_tag="SF1281" /note="GTP cyclohydrolase II RibA; Region: ribA; PRK00393" /db_xref="CDD:234745" misc_feature complement(order(1333118..1333120,1333127..1333132, 1333136..1333141,1333148..1333153,1333175..1333177, 1333181..1333183,1333220..1333222,1333229..1333234, 1333253..1333255,1333259..1333273,1333277..1333282, 1333286..1333288,1333340..1333342,1333346..1333348, 1333352..1333354,1333373..1333381,1333385..1333387, 1333409..1333429)) /gene="ribA" /locus_tag="SF1281" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238348" misc_feature complement(order(1332983..1332985,1332992..1333000, 1333061..1333063,1333067..1333069,1333103..1333105, 1333121..1333123,1333130..1333132,1333142..1333144, 1333163..1333174,1333235..1333237,1333244..1333246, 1333250..1333252,1333277..1333279,1333283..1333300)) /gene="ribA" /locus_tag="SF1281" /note="active site" /db_xref="CDD:238348" gene 1333614..1334378 /gene="pgpB" /locus_tag="SF1282" /db_xref="GeneID:1024235" CDS 1333614..1334378 /gene="pgpB" /locus_tag="SF1282" /note="Code: I; COG: COG0671" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphatase B" /protein_id="NP_707187.1" /db_xref="GeneID:1024235" /translation="MRSIARRTAVGAALLLVMPVAVWISGWRWQPGEQSWLLKAAFWV TETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQE PRPFVIWLEKTHHIPVDEFYTLKRAERGNLVKEQLAEEKNIPQYLRSHWQKETGFAFP SGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMGSRLLLGMHWPRDLVVATLI SWALVAVATWLAQRICGPLTPPAEENREIAQREQES" misc_feature 1333614..1334345 /gene="pgpB" /locus_tag="SF1282" /note="phosphatidylglycerophosphatase B; Provisional; Region: PRK10699" /db_xref="CDD:182658" misc_feature order(1333902..1333904,1333923..1333925,1334094..1334102, 1334214..1334216,1334232..1334234,1334244..1334246) /gene="pgpB" /locus_tag="SF1282" /note="active site" /db_xref="CDD:238813" gene 1334527..1334835 /gene="yciS" /locus_tag="SF1283" /db_xref="GeneID:1026325" CDS 1334527..1334835 /gene="yciS" /locus_tag="SF1283" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707188.1" /db_xref="GeneID:1026325" /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL LAVLFAAGFAIGWLICGLFWLRVRVSLARAERKIKRLENQLSPATDVAVVPHSSAAKE " misc_feature 1334527..1334811 /gene="yciS" /locus_tag="SF1283" /note="Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family [Function unknown]; Region: YciS; COG3771" /db_xref="CDD:442985" gene 1334842..1336011 /gene="yciM" /locus_tag="SF1284" /db_xref="GeneID:1024224" CDS 1334842..1336011 /gene="yciM" /locus_tag="SF1284" /note="Code: G; COG: COG2956" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707189.1" /db_xref="GeneID:1024224" /translation="MLELLFLLLPVAAAYGWYMGRRSAQQNKQDEANRLSRDYVAGVN FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT YEQRLLAIQQLGRDYMAAGLYDRAEDMFNQLTDETDFRIGALQQLLQIYQATSEWQKA IDVAERLVKLGKDKQRVEIAHFYCELALQHMASDDLDRAMTLLKKGAAADKNSARVSI MMGRVFMAKGEYAKAVESLQRVISQDRELVSETLEMLQTCYQQLGKTAEWAEFLQRAV EENTGADAELMLADIIEARDGSEAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA KESLMVLRDMVGEKVRSKPRYSCHKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGL" misc_feature 1334869..1336008 /gene="yciM" /locus_tag="SF1284" /note="tetratricopeptide repeat protein; Provisional; Region: PRK11788" /db_xref="CDD:236983" misc_feature order(1334968..1334973,1334977..1334979,1335049..1335051, 1335058..1335063,1335070..1335075,1335079..1335084, 1335151..1335153,1335172..1335177,1335184..1335189, 1335196..1335198) /gene="yciM" /locus_tag="SF1284" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 1335043..1335135 /gene="yciM" /locus_tag="SF1284" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1335148..1335237 /gene="yciM" /locus_tag="SF1284" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1335262..1335348 /gene="yciM" /locus_tag="SF1284" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1335379..1335465 /gene="yciM" /locus_tag="SF1284" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(1335382..1335384,1335391..1335396,1335403..1335408, 1335412..1335414,1335484..1335486,1335493..1335498, 1335505..1335510,1335514..1335519,1335589..1335591, 1335598..1335603,1335610..1335615,1335622..1335624) /gene="yciM" /locus_tag="SF1284" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 1335478..1335570 /gene="yciM" /locus_tag="SF1284" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1335583..1335672 /gene="yciM" /locus_tag="SF1284" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene 1336204..1336941 /gene="pyrF" /locus_tag="SF1285" /db_xref="GeneID:1024264" CDS 1336204..1336941 /gene="pyrF" /locus_tag="SF1285" /note="Code: F; COG: COG0284" /codon_start=1 /transl_table=11 /product="orotidine 5'-phosphate decarboxylase" /protein_id="NP_707190.1" /db_xref="GeneID:1024264" /translation="MTLTASSSSRAVTNSPVVVALDYHNCDDALSFVDKIDPRDCRLK VGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASG GARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLADLGVTLSPADYAERLAALTQK CDLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALAAGVDYM VIGRPVTQSVDPAQTLKAINASLQRSA" misc_feature 1336240..1336932 /gene="pyrF" /locus_tag="SF1285" /note="orotidine-5'-phosphate decarboxylase; Region: PRK00230" /db_xref="CDD:234695" misc_feature order(1336261..1336263,1336267..1336269,1336333..1336335, 1336339..1336341,1336414..1336416,1336420..1336422, 1336591..1336596,1336768..1336770,1336864..1336869) /gene="pyrF" /locus_tag="SF1285" /note="active site" /db_xref="CDD:240076" misc_feature order(1336339..1336341,1336345..1336350,1336417..1336422, 1336426..1336431,1336438..1336443,1336450..1336455, 1336498..1336506,1336537..1336539,1336591..1336593, 1336651..1336653,1336867..1336869) /gene="pyrF" /locus_tag="SF1285" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240076" gene 1336938..1337267 /gene="yciH" /locus_tag="SF1286" /db_xref="GeneID:1024225" CDS 1336938..1337267 /gene="yciH" /locus_tag="SF1286" /note="Code: J; COG: COG0023" /codon_start=1 /transl_table=11 /product="translation initiation factor Sui1" /protein_id="NP_707191.1" /db_xref="GeneID:1024225" /translation="MMSDSNSRLVYSTETGRIDEPKAAPVRPKGDGAVRIQRQTSGRK GKGVCLITGIDLDDAELTKLAAELKKKCGCGGAVKDGVIEIQGDKRDLLKSLLEAKGM KVTLAGG" misc_feature 1336941..1337264 /gene="yciH" /locus_tag="SF1286" /note="stress response translation initiation inhibitor YciH; Region: PRK09019" /db_xref="CDD:181613" misc_feature order(1337058..1337060,1337070..1337075,1337079..1337081, 1337133..1337135,1337142..1337150,1337154..1337162, 1337166..1337168,1337193..1337195,1337202..1337204) /gene="yciH" /locus_tag="SF1286" /note="putative rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:211319" gene complement(1337394..1337612) /gene="osmB" /locus_tag="SF1287" /db_xref="GeneID:1024276" CDS complement(1337394..1337612) /gene="osmB" /locus_tag="SF1287" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_707192.1" /db_xref="GeneID:1024276" /translation="MFVTSKKMTAAVLAITLAMSLSACSNWSKRDRNTAIGAGAGALG GAVLTDGSTLGTLGGAAVGGVIGHQVGK" misc_feature complement(1337397..1337612) /gene="osmB" /locus_tag="SF1287" /note="osmotically-inducible lipoprotein OsmB; Region: PRK10540" /db_xref="CDD:182532" gene complement(1337881..1338630) /locus_tag="SF1288" /db_xref="GeneID:1024263" CDS complement(1337881..1338630) /locus_tag="SF1288" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_707193.1" /db_xref="GeneID:1024263" /translation="MNSRQQTILQMVIDQGQVSVTDLAKATGVSEVTIRQDLNTLEKL SYLRRAHGFAVSLDSDDVETRMMSNYTLKRELAEFAASLVQPGETIFIENGSSNALLA RTLGEQKKNVTIITVSSYIAHLLKDAPCEVILLGGVYQKKSESMVGPLTRQCIQQVHF SKAFIGIDGWQPETGFTGRDMMRTDVVNAVLEKESPAIVLTDSSKFGAVHSYSIGPVE RFNRVITDSKIRASDLMHLEHSKLTVHVVDI" misc_feature complement(1337890..1338630) /locus_tag="SF1288" /note="DNA-binding transcriptional regulator YciT; Region: trans_reg_YciT; NF040887" /db_xref="CDD:468823" gene complement(1338720..1338902) /locus_tag="SF1289" /db_xref="GeneID:1024207" CDS complement(1338720..1338902) /locus_tag="SF1289" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707194.1" /db_xref="GeneID:1024207" /translation="MSLMSEFDAQRVAERIDIVLDILVAGDYHSAIHNLEILKAELLR QVAESTPDIPKTPWEI" misc_feature complement(1338723..1338893) /locus_tag="SF1289" /note="hypothetical protein; Provisional; Region: PRK13658" /db_xref="CDD:184215" gene complement(1339041..1341015) /gene="yciR" /locus_tag="SF1290" /pseudo /db_xref="GeneID:1024237" misc_feature complement(1339041..1341015) /gene="yciR" /locus_tag="SF1290" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787541 (662 aa). BLAST with identity of 98% in 658 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct." /pseudo gene complement(1341250..1343184) /gene="rnb" /locus_tag="SF1291" /db_xref="GeneID:1024215" CDS complement(1341250..1343184) /gene="rnb" /locus_tag="SF1291" /note="Code: K; COG: COG0557" /codon_start=1 /transl_table=11 /product="exoribonuclease II" /protein_id="NP_707195.1" /db_xref="GeneID:1024215" /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY FIPPPQMKKVMHGDRIIAVIHSEKERESAEPEELVEPFLTRFVGKVQGKNDRLTIVPD HPLLKDAIPCRAARGLNHEFKEGDWAVAEMRRHPLKGDRSFYAELTQYITFGDDHFVP WWVTLARHNLEKEAPDGVATEMLDEGLVREDLTSLDFVTIDSASTEDMDDALFAKALP DDKLQLIVAIADPTAWIAEGSKLDKAAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN EVRPVLACRMTLSADGTIEDNIEFFAATIESKAKLVYDQVSDWLENTGDWKPESEAIA EQVRLLAQICQRRGEWRHNHALVFKDRPDYRFILGEKGEVLDIVAEPRRIANRIVEEA MIAANICAARVLRDKLGFGIYNVHMGFDPANADALAALLKTHGLHVDAEEVLTLDGFC KLRRELDAQPTGFLDSRIRRFQSFAEISSEPGPHFGLGLEAYATWTSPIRKYGDMINH RLLKAVIKGETATRPQDEITVQMAERRRLNRMAERDVGDWLYARFLKDKAGTGTRFAA EIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVI DVTIAEVRMETRSIIARPVA" misc_feature complement(1341256..1343184) /gene="rnb" /locus_tag="SF1291" /note="exoribonuclease II; Provisional; Region: PRK05054" /db_xref="CDD:179920" gene complement(1343252..1344379) /gene="yciW" /locus_tag="SF1292" /db_xref="GeneID:1024260" CDS complement(1343252..1344379) /gene="yciW" /locus_tag="SF1292" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_707196.2" /db_xref="GeneID:1024260" /translation="MEQRHITGKSHWYHETQSSTTEYDVLPLVPEAAKVSDPFLLDVI LDEETLAPFLSWLVPARVLAVELFPDQLTVTRSQTFTAYERLSTALTVAQVCGVQRLC NYYSARLTPLPGPDSSRESNHRLAQITQYARQLASSPSIIDNRSRQHLNDVGLTVWDC VIINQIIGFIGFQARTIATFQAYLGHPVRWLPGLAIQNYADASLFADESIRWRSSYEV EKLPEEHTKSSTAELCQLAETLSLHPISLSLLEKLLNSTRVNAQPDNQLAALLCARIN GSPACFSTCMDSSNEYKKISTLLRKGENEINRWADRHSVERATVQAIQWLTRAPDRFS AAQFSPLLEHEKSSTQIINLLVWSGLCGWINRLKIALGETY" misc_feature complement(1343804..>1344181) /gene="yciW" /locus_tag="SF1292" /note="N-terminal domain of uncharacterized protein YciW (function unknown) [Function unknown]; Region: YciW1; COG4950" /db_xref="CDD:443977" misc_feature complement(1343264..1343584) /gene="yciW" /locus_tag="SF1292" /note="Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism]; Region: YciW; COG2128" /db_xref="CDD:441731" gene complement(1344523..1345311) /gene="fabI" /locus_tag="SF1293" /db_xref="GeneID:1024254" CDS complement(1344523..1345311) /gene="fabI" /locus_tag="SF1293" /note="Code: I; COG: COG0623" /codon_start=1 /transl_table=11 /product="enoyl-ACP reductase" /protein_id="NP_707197.1" /db_xref="GeneID:1024254" /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL KGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDG DYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMG LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR TVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK" misc_feature complement(1344526..1345311) /gene="fabI" /locus_tag="SF1293" /note="enoyl-ACP reductase FabI; Region: PRK07984" /db_xref="CDD:181187" misc_feature complement(order(1344721..1344732,1344736..1344747, 1344823..1344825,1344844..1344846,1344874..1344882, 1344955..1344957,1345030..1345041,1345117..1345125, 1345192..1345194,1345252..1345257,1345267..1345275)) /gene="fabI" /locus_tag="SF1293" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(1344553..1344558,1344562..1344600, 1344604..1344606,1344619..1344621,1344628..1344633, 1344640..1344642,1344658..1344669,1344685..1344687, 1344694..1344696,1344775..1344780,1344784..1344801, 1344805..1344810,1344817..1344822,1344829..1344834, 1344841..1344846,1344850..1344861,1344865..1344870, 1344916..1344918,1344925..1344927,1344937..1344939, 1344946..1344951,1344958..1344963,1344970..1344975, 1344982..1344990,1344994..1345005,1345099..1345101, 1345108..1345119,1345222..1345224)) /gene="fabI" /locus_tag="SF1293" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(1344781..1344789,1344793..1344801, 1344805..1344810,1344817..1344822,1344829..1344834, 1344841..1344846,1344853..1344861,1344865..1344870, 1344916..1344918,1344925..1344930,1344937..1344939, 1344946..1344951,1344958..1344963,1344970..1344975, 1344982..1344990,1344994..1345005,1345108..1345119)) /gene="fabI" /locus_tag="SF1293" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(1344703..1344705,1344712..1344714, 1344721..1344726,1344823..1344825,1344835..1344837, 1344844..1344846,1344874..1344876,1345027..1345029, 1345033..1345035)) /gene="fabI" /locus_tag="SF1293" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187630" misc_feature complement(order(1344823..1344825,1344835..1344837, 1344874..1344876,1344952..1344954)) /gene="fabI" /locus_tag="SF1293" /note="active site" /db_xref="CDD:187630" gene complement(1345679..1346032) /gene="ycjD" /locus_tag="SF1294" /db_xref="GeneID:1024265" CDS complement(1345679..1346032) /gene="ycjD" /locus_tag="SF1294" /note="Code: S; COG: COG2852" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707198.1" /db_xref="GeneID:1024265" /translation="MMDKIKSNARDLRRNLTLQERKLWRYLRSRRFGDFKFRRQHPVG SYILDFACCSARVVVELDGGQHDLAVAYDTRRTSWLESQGWTVLRFWNNEIDCNEEAV LEIILQELNRRSPSP" misc_feature complement(1345682..1346032) /gene="ycjD" /locus_tag="SF1294" /note="DUF559 domain-containing protein; Region: PRK09767" /db_xref="CDD:182067" misc_feature complement(order(1345814..1345816,1345835..1345837, 1345886..1345888,1345973..1345975)) /gene="ycjD" /locus_tag="SF1294" /note="putative active site [active]" /db_xref="CDD:411708" gene complement(1346100..1346906) /gene="sapF" /locus_tag="SF1295" /db_xref="GeneID:1024268" CDS complement(1346100..1346906) /gene="sapF" /locus_tag="SF1295" /note="Code: EP; COG: COG1124" /codon_start=1 /transl_table=11 /product="antimicrobial peptide ABC transporter ATP-binding protein SapF" /protein_id="NP_707199.1" /db_xref="GeneID:1024268" /translation="MIETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLA IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSFRSQRIRMIFQDPSTSLN PRQRISQILDFPLRLNTDLEPEQRRKQIIETMRMVGLLPDHVSYYPHMLAPGQKQRLG LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS DQVLVMHQGEVVERGSTADVLASPLHELTKRLIAGHFGEALTADAWRKDR" misc_feature complement(1346103..1346903) /gene="sapF" /locus_tag="SF1295" /note="peptide ABC transporter ATP-binding protein SapF; Region: PRK15112" /db_xref="CDD:185067" gene complement(1346908..1347900) /gene="sapD" /locus_tag="SF1296" /db_xref="GeneID:1024262" CDS complement(1346908..1347900) /gene="sapD" /locus_tag="SF1296" /note="Code: EP; COG: COG0444" /codon_start=1 /transl_table=11 /product="antimicrobial peptide ABC transporter ATP-binding protein" /protein_id="NP_707200.1" /db_xref="GeneID:1024262" /translation="MPLLDIRNLTIEFKTGDEWVKAVDRVSMTLTEGEIRGLVGESGS GKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSARERRKLVGHNVSMIFQEPQSCL DPSERVGRQLMQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELT EGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD LQMLSQWADKINVLYCGQTVETAPSKELVTMPHHPYTQALIRAIPDFGSAMPHKSRLN TLPGAIPLLEQLPIGCRLGPRCPYAQRECIVTPRLTGAKNHLYACHFPLNMEKE" misc_feature complement(1346911..1347900) /gene="sapD" /locus_tag="SF1296" /note="peptide ABC transporter ATP-binding protein SapD; Region: PRK15093" /db_xref="CDD:185049" gene complement(1347900..1348790) /gene="sapC" /locus_tag="SF1297" /db_xref="GeneID:1024270" CDS complement(1347900..1348790) /gene="sapC" /locus_tag="SF1297" /note="Code: EP; COG: COG1173" /codon_start=1 /transl_table=11 /product="antimicrobial peptide ABC transporter permease SapC" /protein_id="NP_707201.1" /db_xref="GeneID:1024270" /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDASAMVGLYGCAGLAVLCI FGGWFAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA FVVTLAATICGLVLGTFAGATHGLRSAVLNHILDTLLAIPSLLLAIIVVAFAGPSLSH AMFAVWLALLPRMVRSIYSMVHDELEKEYVIAARLDGASTLNILWFAVMPNITAGLVT EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAIMIS VLLVNLLGDGVRRAIIAGVE" misc_feature complement(1347903..1348790) /gene="sapC" /locus_tag="SF1297" /note="peptide ABC transporter permease SapC; Region: PRK15111" /db_xref="CDD:185066" gene complement(1348777..1349742) /gene="sapB" /locus_tag="SF1298" /db_xref="GeneID:1024258" CDS complement(1348777..1349742) /gene="sapB" /locus_tag="SF1298" /note="Code: EP; COG: COG0601" /codon_start=1 /transl_table=11 /product="antimicrobial peptide ABC transporter permease SapB" /protein_id="NP_707202.1" /db_xref="GeneID:1024258" /translation="MIIFTLRRILLLIVTLFLLTFVGFSLSYFTPHAPLQGASLWNAW VFWFNGLIHWDFGVSSINGQPIAEQLKELFPATIELCILAFGFALIVGIPVGMIAGIT RHKWQDNLINAIALLGFSIPVFWLALLLTLFCSLTLGWLPVSGRFDLLYEVKPITGFA LIDAWLSDSPWRDEMIMSAIRHMILPVITLSVAPTTEVIRLMRISTIEVYDQNYVKAA ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLINAI RQQDYAAISAGVMVCGSLVIIVNVISDILGAMANPLKHKEWYALR" misc_feature complement(1348780..1349742) /gene="sapB" /locus_tag="SF1298" /note="peptide ABC transporter permease SapB; Region: PRK15110" /db_xref="CDD:185065" misc_feature complement(order(1348852..1348857,1348864..1348869, 1348876..1348881,1348885..1348890,1348897..1348902, 1348930..1348935,1348960..1348965,1348972..1348983, 1349002..1349004,1349011..1349016,1349056..1349058, 1349107..1349109,1349116..1349121,1349131..1349133, 1349137..1349142,1349149..1349151,1349155..1349157, 1349161..1349166,1349350..1349352,1349356..1349361, 1349368..1349397,1349401..1349412,1349443..1349445, 1349458..1349463,1349470..1349475)) /gene="sapB" /locus_tag="SF1298" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1348966..1348983,1349350..1349394)) /gene="sapB" /locus_tag="SF1298" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(1348900..1348902,1348930..1348932, 1348939..1348941,1348963..1348965,1349179..1349181, 1349350..1349352)) /gene="sapB" /locus_tag="SF1298" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(1349035..1349037,1349047..1349052, 1349068..1349106)) /gene="sapB" /locus_tag="SF1298" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(1349739..1351382) /gene="sapA" /locus_tag="SF1299" /db_xref="GeneID:1024271" CDS complement(1349739..1351382) /gene="sapA" /locus_tag="SF1299" /note="Code: EP; COG: COG0747" /codon_start=1 /transl_table=11 /product="antimicrobial peptide ABC transporter substrate-binding protein SapA" /protein_id="NP_707203.1" /db_xref="GeneID:1024271" /translation="MRQVLSSLLVIAGLVSGQAIAAPESPPHADIRDSGFVYCVSGQV NTFNPSKASSGLIVDTLAAQFYDRLLDVDPYTYRLMPELAESWEVLDNGATYRFHLRR DVPFQKTDWFTPTRKMNADDVVFTFQRIFDRNNPWHNVNGSNFPYFDSLQFADNVKSV RKLDNHTVEFRLAQPDASFLWHLATHYASVMSAEYARKLEKEDRQEQLDRQPVGTGPY QLSEYRAGQFIRLQRHDDFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPAAS QLSILRDDPRLRLTLRPGMNVAYLAFNTAKPPLNNPAVRHALALAINNQRLMQSIYYG TAETAASILPRASWAYDNEAKITEYNPAKSREQLKALGLENLTLKLWVPTRSQAWNPS PLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMSHDLTLSGWATDSNDPDSFFRP LLSCAAIHSQTNLAHWCNPKFDSVLRKALSSQQLAARIEAYDEAQSILAQELPILPLA SSLRLQAYRYDIKGLVLSPFGNASFAGVYREKQDEVKKP" misc_feature complement(1349742..1351382) /gene="sapA" /locus_tag="SF1299" /note="antimicrobial peptide ABC transporter periplasmic binding protein SapA; Provisional; Region: PRK15109" /db_xref="CDD:185064" gene complement(1351695..1351940) /gene="ymjA" /locus_tag="SF1300" /db_xref="GeneID:1024256" CDS complement(1351695..1351940) /gene="ymjA" /locus_tag="SF1300" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707204.1" /db_xref="GeneID:1024256" /translation="MNHDIPLKYFDIADEYATECAEPVAEAERTPLAHYFQLLLTRLM NNEEISEEAQHEMAAEAGINPVRIDEIAEFLNQWGNE" misc_feature complement(1351698..1351940) /gene="ymjA" /locus_tag="SF1300" /note="Protein of unknown function (DUF2543); Region: DUF2543; pfam10820" /db_xref="CDD:431510" gene complement(1352074..1353459) /gene="ycjJ" /locus_tag="SF1301" /db_xref="GeneID:1023365" CDS complement(1352074..1353459) /gene="ycjJ" /locus_tag="SF1301" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="amino acid/amine transport protein" /protein_id="NP_707205.2" /db_xref="GeneID:1023365" /translation="MAINSPLNIAAQPGKTRLRKSLKLWQVVMMGLAYLTPMTVFDTF GIVSGISDGHVPASYLLALAGVLFTAISYGKLVRQFPEAGSAYTYAQKSINPHVGFMV GWSSLLDYLFLPMINVLLAKIYLSALFPEVPPWVWVVTFVAILTAANLKSVNLVANFN TLFVLVQISIMVVFIFLVVQGLHKGEGVGTVWSLQPFISENAHLIPIITGATIVCFSF LGFDAVTTLSEETPDAARVIPKAIFLTAVYGGVIFIAASFFMQLFFPDISRFKDPDAA LPEIALYVGGKLFQSIFLCTTFVNTLASGLASHASVSRLLYVMGRDNVFPERVFGYVH PKWRTPALNVIMVGIVALSALFFDLVTATALINFGALVAFTFVNLSVFNHFWRRKGMN KSWKDHFHYLLMPLVGALTVGVLWVNLESTSLTLGLVWASLGGAYLWYLIRRYRKVPL YEGDRTPVSET" misc_feature complement(1352095..1353429) /gene="ycjJ" /locus_tag="SF1301" /note="Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:440297" gene complement(1353762..1355180) /locus_tag="SF1302" /db_xref="GeneID:1024230" CDS complement(1353762..1355180) /locus_tag="SF1302" /note="Code: E; COG: COG0174" /codon_start=1 /transl_table=11 /product="glutamine synthetase" /protein_id="NP_707206.2" /db_xref="GeneID:1024230" /translation="METNIVEVENFVQQSEERRGSAFTQEVKRYLERYPNTQYVDVLL TDLNGCFRGKCKPVSSLYKLDTRRYLVASIFALNILGNVVEEAGLGQEMGEPDRTCVP VLGSLTPSAADPEFIGQMLLTMVDEDGAPFDVEPRNVLNRLWQQLRQRGLFPVVAVEL EFYLLDRQRDAEGDLQPPCAPGTDDRNTQSQVYSVDNLNHFADVLNDIDELAQLQLIP ADGAVAEASPGQFEINLYHTDNVLEACDDALALKRLVRLMAEKHKMHATFMAKPYEEH AGSGMHIHISMQNNRGENVLSDTEGEDSPLLKKMLAGMIDLMPSSMALLAPNVNSYRR FQPGMYVPTQASWGHNNRTVALRIPCGDRHNHRVEYHVAGADANPYLVMAAIFAGILH GLDNELPLQEEVEGNGLEQEGLPFPIRQSDALGEFIENDHLRRYLGERFCHVYHACKN DELLQFERLITETEIEWMLKNA" misc_feature complement(1353774..1355108) /locus_tag="SF1302" /note="Glutamine synthetase [Amino acid transport and metabolism]; Region: GlnA; COG0174" /db_xref="CDD:439944" gene 1355380..1356156 /gene="puuD" /locus_tag="SF1303" /db_xref="GeneID:1027800" CDS 1355380..1356156 /gene="puuD" /locus_tag="SF1303" /note="Code: R; COG: COG2071" /codon_start=1 /transl_table=11 /product="gamma-glutamyl-gamma-aminobutyrate hydrolase" /protein_id="NP_707207.2" /db_xref="GeneID:1027800" /translation="MRLSMENIMNNPVIGVVMCRNRLKGHATQTLQEKYLNAIIHAGG LPIALPHALAEPSLLEQLLPKLDGIYLPSSPSNVQPHLYGENGDEPDADPGRDLLSMA IINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLEHREDPELPVEQQYAPS HEVQVEEGGLLSALLPECSNFWVNSLHGQGAKVVSPRLRVEARSPDGLVEAVSVINHP FALGVQWHPEWNSSEYALSRILFEGFITAWQHHIAEKQRL" misc_feature 1355392..1356153 /gene="puuD" /locus_tag="SF1303" /note="gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional; Region: puuD; PRK11366" /db_xref="CDD:183101" gene 1356183..1356740 /gene="ycjC" /locus_tag="SF1304" /db_xref="GeneID:1024243" CDS 1356183..1356740 /gene="ycjC" /locus_tag="SF1304" /note="Code: K; COG: COG1396" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor PuuR" /protein_id="NP_707208.1" /db_xref="GeneID:1024243" /translation="MSDEGLAPGKRLSEIRQQQGLSQRRAAELSGLTHSAISTIEQDK VSPAISTLQKLLKVYGLSLSEFFSEPEKPDEPQVVINQDDLIEMGSQGVSMKLVHNGN PNRTLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTINGQDYHLVAGQSYAINT GIPHSFSNTSAGICRIISAHTPTTF" misc_feature 1356183..1356737 /gene="ycjC" /locus_tag="SF1304" /note="HTH-type transcriptional regulator PuuR; Region: PRK09943" /db_xref="CDD:182158" gene 1356890..1358377 /gene="aldH" /locus_tag="SF1305" /db_xref="GeneID:1024250" CDS 1356890..1358377 /gene="aldH" /locus_tag="SF1305" /note="Code: C; COG: COG1012" /codon_start=1 /transl_table=11 /product="gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase" /protein_id="NP_707209.2" /db_xref="GeneID:1024250" /translation="MNFHHLAYWQDKALSLAIENRLFINGEYTAAAENETFETVDPVT QAPLAKIARGKSVDIDRAVSAARGVFERGDWSLSSPAKRKAVLNKLADLMEAHAEELA LLETLDTGKPIRHSLRDDIPGAARAIRWYAEAIDKVYGEVATTSSHELAMIVREPVGV IAAIVPWNFPLLLTCWKLGPALAAGNSVILKPSEKSPLSAIRLAGLAKEAGLPDGVLN VVTGFGHEAGQALSRHNDIDAIAFTGSTRTGKQLLKDAGDSNMKRVWLEAGGKSANIV FADCPDLQKAASATAAGIFYNQGQVRIAGTRLLLEESIADEFLALLKQQAQNWQPGHP LDPATTMGTLIDSAHADSVHTFIREGEGKGQLLLDGRNAGLAAAIGPTIFVDVDPNAS LSREEIFGPVLVVTRFTSEDQALQLANDSQYGLGAAVWTRDLSRAHRMSRRLKAGSVF VNNYNDGDMTVPFGGYKQSGNGRDKSLHALEKFTELKTIWISLEA" misc_feature 1356890..1358371 /gene="aldH" /locus_tag="SF1305" /note="gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional; Region: PRK09847" /db_xref="CDD:182108" misc_feature order(1357379..1357393,1357415..1357417,1357460..1357462, 1357466..1357471,1357613..1357624,1357631..1357633, 1357640..1357645,1357688..1357696,1357793..1357795, 1358078..1358080,1358084..1358086,1358162..1358164, 1358276..1358278) /gene="aldH" /locus_tag="SF1305" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143430" misc_feature order(1357391..1357393,1357688..1357690,1357784..1357786, 1357793..1357795) /gene="aldH" /locus_tag="SF1305" /note="catalytic residues [active]" /db_xref="CDD:143430" gene 1358379..1359659 /gene="ordL" /locus_tag="SF1306" /db_xref="GeneID:1024247" CDS 1358379..1359659 /gene="ordL" /locus_tag="SF1306" /note="Code: E; COG: COG0665" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_707210.1" /db_xref="GeneID:1024247" /translation="MTEHTSSYYAASANKYAPFDTLNESITCDVCVVGGGYTGLSSAL HLAEAGFDVVVLEASRIGFGASGRNGGQLVNSYSRDIDVIEKSYGMDTARMLGSMMFE GGEIIRERIKRYQIDCDYRPGGLFVAMNDKQLATLEEQKENWVRYGNKQLELLDVNAI RREVASDRYTGALLDHSGGHIHPLNLAIGEADAIRLNGGRVYELSAVTQIQHTTPAVV RTANGQVTAKYVIVAGNAYLGDKVEPELAKRSMPCGTQVITTERLSEDLARSLIPKNY CVEDCNYLLDYYRLTADNRLLYGGGVVYGARNPDDVERLVVPKLLKTFPQLKGVKIDY RWTGNFLLTLSHMPQFGRLDTNIYYMQGYSGHGVTCTHLAGRLIAELLRGDAERFDAF ANLPHYPFPGGRTLRVPFTAMGAAYYSLRDRLGV" misc_feature 1358454..1359557 /gene="ordL" /locus_tag="SF1306" /note="Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:440429" gene 1359697..1360962 /gene="goaG" /locus_tag="SF1307" /db_xref="GeneID:1024259" CDS 1359697..1360962 /gene="goaG" /locus_tag="SF1307" /note="Code: E; COG: COG0160" /codon_start=1 /transl_table=11 /product="4-aminobutyrate transaminase" /protein_id="NP_707211.1" /db_xref="GeneID:1024259" /translation="MSNNEFHQRRLSATPRGVGVMCNFFAQSAENATLKDVEGNEYID FAAGIAVLNTGHRHPDLVAAVEQQLQQFTHTAYQIVPYESYVTLAEKINTLAPVSGQA KTAFFTTGAEAVENAVKIARAHTGRPSVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP FPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGECGFNVAPK ELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGMPLS GVVGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTL IDAKESVPAIAAVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYG NVIRFLYPLTIPDAQFDAAMKILQDALSD" misc_feature 1359697..1360959 /gene="goaG" /locus_tag="SF1307" /note="4-aminobutyrate transaminase; Provisional; Region: PRK09792" /db_xref="CDD:182078" misc_feature order(1360021..1360029,1360105..1360110,1360114..1360116, 1360309..1360311,1360408..1360410,1360414..1360419, 1360495..1360497) /gene="goaG" /locus_tag="SF1307" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature order(1360024..1360029,1360105..1360110,1360309..1360311, 1360408..1360410,1360417..1360419,1360495..1360497) /gene="goaG" /locus_tag="SF1307" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 1360495..1360497 /gene="goaG" /locus_tag="SF1307" /note="catalytic residue [active]" /db_xref="CDD:99735" gene complement(1361082..1362074) /gene="pspF" /locus_tag="SF1308" /db_xref="GeneID:1024240" CDS complement(1361082..1362074) /gene="pspF" /locus_tag="SF1308" /note="Code: O; COG: COG1221" /codon_start=1 /transl_table=11 /product="psp operon transcriptional activator" /protein_id="NP_707212.3" /db_xref="GeneID:1024240" /translation="MANFIMAEYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERG TGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKLHPGRFE RADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAM VNEGTFRADLLDRLAFDVVQLPPLRERESDIMLMAEHFAIQMCREIKLPLFPGFTERA RETLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDIIIDPFKRRPPEEAIAVSENTS LPTLPLDLREFQMQQEKELLQLSLQQGKYNQKRAAELLGLTYHQFRALLKKHQI" misc_feature complement(1361085..1362059) /gene="pspF" /locus_tag="SF1308" /note="phage shock protein operon transcriptional activator; Provisional; Region: pspF; PRK11608" /db_xref="CDD:236936" gene 1362226..1362894 /gene="pspA" /locus_tag="SF1309" /db_xref="GeneID:1024253" CDS 1362226..1362894 /gene="pspA" /locus_tag="SF1309" /note="Code: I; COG: COG1842" /codon_start=1 /transl_table=11 /product="phage shock protein PspA" /protein_id="NP_707213.1" /db_xref="GeneID:1024253" /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR STSARALAEKKQLTRRIEQASAREVEWQEKAELALLKEREDLARAALIEKQKLTDLIK SLEHEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAANSSRDVRRQLDSGK LDEAMARFESFERRIDQMEAEAESHSFGKQKSLDDQFAELKADDAISEQLAQLKAKMK QDNQ" misc_feature 1362226..1362891 /gene="pspA" /locus_tag="SF1309" /note="phage shock protein PspA; Provisional; Region: PRK10698" /db_xref="CDD:182657" gene 1362948..1363172 /gene="pspB" /locus_tag="SF1310" /db_xref="GeneID:1024284" CDS 1362948..1363172 /gene="pspB" /locus_tag="SF1310" /codon_start=1 /transl_table=11 /product="phage shock protein B" /protein_id="NP_707214.1" /db_xref="GeneID:1024284" /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRSGRSELSQSEQQRLA QLVDEAKRMRERIQALESILDAEHPNWRDR" misc_feature 1362948..1363169 /gene="pspB" /locus_tag="SF1310" /note="envelope stress response membrane protein PspB; Region: pspB; PRK09458" /db_xref="CDD:236526" gene 1363172..1363531 /gene="pspC" /locus_tag="SF1311" /db_xref="GeneID:1024257" CDS 1363172..1363531 /gene="pspC" /locus_tag="SF1311" /note="Code: KT; COG: COG1983" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator PspC" /protein_id="NP_707215.1" /db_xref="GeneID:1024257" /translation="MAGINLNKKLWRIPQQGMVRGVCAGIANYFDVPVKLVRILVVLS IFFGLALFTLVAYIILSFALDPMPDNMAFGEQLPSSSELLDEVDRELAASETRLREME RYVTSDTFTLRSRFRQL" misc_feature 1363175..1363528 /gene="pspC" /locus_tag="SF1311" /note="envelope stress response membrane protein PspC; Region: PRK10697" /db_xref="CDD:182656" gene 1363540..1363761 /gene="pspD" /locus_tag="SF1312" /db_xref="GeneID:1024261" CDS 1363540..1363761 /gene="pspD" /locus_tag="SF1312" /codon_start=1 /transl_table=11 /product="peripheral inner membrane phage-shock protein" /protein_id="NP_707216.2" /db_xref="GeneID:1024261" /translation="MNTRWQQAGQKVKLGFKLAGKLVLLTALRYGPAGVAGWAIKSVA RRPLKMLLAVALEPLLSRAANKLAQRYKR" misc_feature 1363540..1363758 /gene="pspD" /locus_tag="SF1312" /note="phage shock protein PspD; Region: PRK10497" /db_xref="CDD:182498" gene 1363804..1364151 /gene="pspE" /locus_tag="SF1313" /db_xref="GeneID:1024353" CDS 1363804..1364151 /gene="pspE" /locus_tag="SF1313" /note="Code: P; COG: COG0607" /codon_start=1 /transl_table=11 /product="thiosulfate:cyanide sulfurtransferase" /protein_id="NP_707217.1" /db_xref="GeneID:1024353" /translation="MAIFIHRRTLTCLKKGLLALALVFSLPVFAAEHWIDVRVPEQYQ QEHVQGAINIPLKEVKERIATAVPDKNDTVKVYCNAGRQSGQAKELLSEMGYTHVENA GGLKDIAMPKVKG" misc_feature 1363840..1364148 /gene="pspE" /locus_tag="SF1313" /note="thiosulfate:cyanide sulfurtransferase; Provisional; Region: PRK10287" /db_xref="CDD:182356" misc_feature 1364035..1364037 /gene="pspE" /locus_tag="SF1313" /note="active site residue [active]" /db_xref="CDD:238089" gene 1364336..1366805 /gene="ycjM" /locus_tag="SF1314" /pseudo /db_xref="GeneID:1024249" misc_feature 1364336..1366805 /gene="ycjM" /locus_tag="SF1314" /note="Similar to Escherichia coli K12 polysaccharide hydrolase gi: 1787568 (569 aa). BLAST with identity of 93% in 823 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element 1365467..1365978 /note="partial" /mobile_element_type="insertion sequence:IS1" gene 1365522..1365797 /gene="insA" /locus_tag="SF1315" /db_xref="GeneID:1024251" CDS 1365522..1365797 /gene="insA" /locus_tag="SF1315" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707218.1" /db_xref="GeneID:1024251" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 1365543..>1365794 /gene="insA" /locus_tag="SF1315" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" mobile_element 1365979..1366221 /note="partial" /mobile_element_type="insertion sequence:IS1" gene 1366819..1368102 /locus_tag="SF1316" /pseudo /db_xref="GeneID:1024315" misc_feature 1366819..1368102 /locus_tag="SF1316" /note="Similar to Escherichia coli K12 transport periplasmic protein gi: 1787569 (431 aa). BLAST with identity of 95% in 428 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1368123..1369004 /gene="ycjO" /locus_tag="SF1317" /db_xref="GeneID:1024280" CDS 1368123..1369004 /gene="ycjO" /locus_tag="SF1317" /note="Code: G; COG: COG1175" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_707219.1" /db_xref="GeneID:1024280" /translation="MNRLFSGRSDMPFALLLLAPSLLLLGGLVAWPMVSNIEISFLRL PLNPNIESTFVGVSNYVRILSDPGFWHSLWMTVWYTALVVAGSTVLGLAVAMFFNREF RLRKTARSLVILSYVTPSISLVFAWKYMFNNGYGIVNYLGVDLLHLYEQAPLWFDNPG SSFVLVVLFAIWRYFPYAFISFLAILQTIDKSLYEAAEMDGANAWQRFRIVTLPAIMP VLATVVTLRTIWMFYMFADVYLLTTKVDILGVYLYKTAFAFNDLGKAAAISVVLFIII FAVILLTRKRVNLNGNK" misc_feature 1368207..1368986 /gene="ycjO" /locus_tag="SF1317" /note="ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpA; COG1175" /db_xref="CDD:440788" gene 1368991..1369833 /gene="ycjP" /locus_tag="SF1318" /db_xref="GeneID:1024352" CDS 1368991..1369833 /gene="ycjP" /locus_tag="SF1318" /note="Code: G; COG: COG0395" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_707220.1" /db_xref="GeneID:1024352" /translation="MATNKRTLSRIGFYCGLALFLIITLFPFFVMLMTSFKSAKEAIS LHPTLLPQQWTLEHYVDIFNPMIFPFVDYFRNSMVVSVVSSVVAVFLGILGAYALSRL RFKGRMTINASFYTVYMFSGILLVVPLFKIITALGIYDTEMALIITMVTQTLPTAVFM LKSYFDTIPDEIEEAAMMDGLNRLQIIFRITVPLAMSGLISVFVYCFMVAWNDYLFAS IFLSSASNFTLPVGLNALFSTPDYIWGRMMAASLVTALPVVIMYALLERFIKSGLTAG GVKG" misc_feature 1368994..1369830 /gene="ycjP" /locus_tag="SF1318" /note="ABC-type glycerol-3-phosphate transport system, permease component [Carbohydrate transport and metabolism]; Region: UgpE; COG0395" /db_xref="CDD:440164" gene 1369864..1370916 /gene="ycjQ" /locus_tag="SF1319" /db_xref="GeneID:1023364" CDS 1369864..1370916 /gene="ycjQ" /locus_tag="SF1319" /note="Code: ER; COG: COG1063" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_707221.1" /db_xref="GeneID:1023364" /translation="MKKLVATAPRVAALVEYEDRAILANEVKIRVRFGAPKHGTEVVD FRAASPFIDEDFNGEWQMFTPRPADAPRGIEFGKFQLGNMVVGDIIECGSDVTDYAVG DSVCGYGPLSETVIINAVNNYKLRKMPQGSSWKNAVCYNPAQFAMSGVRDANVRVGDF VVVVGLGAIGQIAIQLAKRAGASVVIGVDPIAHRCDIARRHGADFCLNPIGTDVGKEI KTLTGKQGADVIIETSGYADALQSALRGLAYGGTISYVAFAKPFAEGFNLGREAHFNN AKIVFSRACSEPNPDYPRWSRKRIEETCWELLMNGYLNCEDLIDPVVTFANSPESYMQ YVDQHPEQSIKMGVTF" misc_feature 1370098..1370913 /gene="ycjQ" /locus_tag="SF1319" /note="2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members; Region: 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_; cd08255" /db_xref="CDD:176217" misc_feature order(1370284..1370286,1370296..1370298,1370356..1370373, 1370428..1370433,1370443..1370445,1370497..1370499, 1370560..1370565,1370569..1370571,1370629..1370634, 1370710..1370718) /gene="ycjQ" /locus_tag="SF1319" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176217" gene 1370934..1371709 /locus_tag="SF1320" /pseudo /db_xref="GeneID:1024282" misc_feature 1371230..1371709 /locus_tag="SF1320" /note="Similar to Escherichia coli K12 transient receptor potential locus gi: 1787573 (266 aa). BLAST with identity of 96% in 160 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1371719..1372773 /gene="ycjS" /locus_tag="SF1321" /pseudo /db_xref="GeneID:1026335" misc_feature 1371719..1372773 /gene="ycjS" /locus_tag="SF1321" /note="Similar to Escherichia coli K12 dehydrogenase gi: 1787574 (352 aa). BLAST with identity of 98% in 352 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1372770..1375037 /gene="ycjT" /locus_tag="SF1322" /db_xref="GeneID:1024255" CDS 1372770..1375037 /gene="ycjT" /locus_tag="SF1322" /note="Code: G; COG: COG1554" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707222.2" /db_xref="GeneID:1024255" /translation="MTRPVTLSEPHFSQHTLNKYASLMAQGNGYLGLRASHEEDYTRQ TRGMYLAGLYHRAGKGEINELVNLPDILGMEIAINGEVFSLSREAWQRELDFASGELR RSVVWRTSNGAGYTIASRRFVSADQLPLIALEITIMPLDADASVLISTGIDATQTNHG RQHLDETQVRVFGQHLMQGIYTTQDGRSDVAISCCCQVSGDVQQCYTAKERRLLQHTS TQLHAGETVTLQKLVWIDWRDDRQAALDEWGSVSLRQLEMCAQQSYDQHLAASTENWR QWWQKRRITVNGGDAHDQQALDYALYHLRIMTPAHGERSSIAAKGLTGEGYKGHVFWD TEVFLLPFHLFSDPTVARSLLRYRWHNLPGAQEKARRNGWQGALFPWESARSGEEETP EFAAINIRTGLRQKVASAQAEHHLVADIAWAVIQYWQTTGDESFIAHEGMALLLETAK FWISRAVRVNDRLEIHDVIGPDEYTEHVNNNAFTSYMVYYNVQQALSIARQFGCSDDA FIHRAEMFLKELRLPEIQPDGVLPQDDSFMTKPAINLAKYKAAAGKQTILLDYSRAEV NEMQILKQADVVMLNYMLPEQFSSASCLANLQFYEPRTIHDSSLSKAIHGIVAARCGL LTQSYQFWREGTEIDLGADPHSCDDGIHAAATGAIWLGAIQGFAGVSVRDGELHLNPA LLEQWQQLSFPLFWQGCELQVTLDAQRIAIRTSAPVSLRLDGQLISVAEESVFCLGDF ILPFNGTATTHQEDE" misc_feature 1372785..1374959 /gene="ycjT" /locus_tag="SF1322" /note="Kojibiose phosphorylase YcjT [Carbohydrate transport and metabolism]; Region: ATH1; COG1554" /db_xref="CDD:441163" gene 1375034..1375693 /gene="ycjU" /locus_tag="SF1323" /db_xref="GeneID:1024309" CDS 1375034..1375693 /gene="ycjU" /locus_tag="SF1323" /note="Code: R; COG: COG0637" /codon_start=1 /transl_table=11 /product="beta-phosphoglucomutase" /protein_id="NP_707223.1" /db_xref="GeneID:1024309" /translation="MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISIDAQFNESL KGISRDESLRRILQHGGKEGDFNPQERAQLAYRKNLLYVHSLRELTVNAVLPGIRNLL AELRAQQIPVGLASVSLNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGL GVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTDSLTWSRLSAFWQN V" misc_feature 1375046..1375606 /gene="ycjU" /locus_tag="SF1323" /note="beta-phosphoglucomutase; Region: bPGM; TIGR01990" /db_xref="CDD:213672" gene 1375707..1376675 /gene="ycjV" /locus_tag="SF1324" /db_xref="GeneID:1024286" CDS 1375707..1376675 /gene="ycjV" /locus_tag="SF1324" /note="Code: G; COG: COG1130" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_707224.1" /db_xref="GeneID:1024286" /translation="MAQLSLQHIQKIYDNQVHVVKDFNLEIADKEFIVFVGPSGCGKS TTLRMIAGLEEISGGDLLIDGKRMNDVPAKARNIAMVFQNYALYPHMTVYDNMAFGLK MQKIAKEVIDERVNWAAQILGLREYLKRKPGALSGGQRQRVALGRAIVREAGVFLMDE PLSNLDAKLRVQMRAEISKLHQKLNTTMIYVTHDQTEAMTMAARIVIMKDGIVQQVGA PKTVYNQPANMFVAGFIGSPAMNFIRGTIDGDKFVTETLKLTILEEKLAVLKTQESLH KPIVMGIRPEDIHPDAQEENNISAKISVAELTGAEFMLYTTVGGTS" misc_feature 1375707..1376672 /gene="ycjV" /locus_tag="SF1324" /note="ABC-type sugar transport system, ATPase component MalK [Carbohydrate transport and metabolism]; Region: MalK; COG3839" /db_xref="CDD:443050" gene 1376831..1377733 /gene="ompG" /locus_tag="SF1325" /pseudo /db_xref="GeneID:1024310" misc_feature 1376831..1377733 /gene="ompG" /locus_tag="SF1325" /note="Similar to Escherichia coli K12 outer membrane protein gi: 1787579 (302 aa). BLAST with identity of 98% in 301 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(1377844..1378842) /gene="ycjW" /locus_tag="SF1326" /db_xref="GeneID:1024304" CDS complement(1377844..1378842) /gene="ycjW" /locus_tag="SF1326" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="LACI-type transcriptional regulator" /protein_id="NP_707225.1" /db_xref="GeneID:1024304" /translation="MSPTIYDIARVAGVSKSTVSRVLNKQTNISPEAREKVLRAIEEL QYQPNKLARALTSSGFDAIMVISTRSTKTTAGNPFFSEVLHAITAKAEEEGFDVILQT SHNPAEDLQKCESKIKQKMIKGIIMLSSPADESFFAQLDKYDIPVVVIGKVEGQYAHV YSVDTDNFGDSIALTDALIESGHQNIACLHAPLDVHVSVDRVNGYKQSLSAHNIAVRD KWIVDGGYTHETALQAARQLLSQSPLPEAVFATDSLKLMSIYRAAAEKNIAIPQQLAV VGYSNETLSFILTPAPGGIDVPTQELGQQSCELLFRLISGKPSPQNITVATHMTLK" misc_feature complement(1377859..1378836) /gene="ycjW" /locus_tag="SF1326" /note="DNA-binding transcriptional regulator, LacI/PurR family [Transcription]; Region: PurR; COG1609" /db_xref="CDD:441217" gene 1378998..1380395 /gene="ycjX" /locus_tag="SF1327" /db_xref="GeneID:1024303" CDS 1378998..1380395 /gene="ycjX" /locus_tag="SF1327" /note="Code: R; COG: COG3106" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707226.1" /db_xref="GeneID:1024303" /translation="MKRLKNELNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQLL NIHAGARLPLLSAVREERLLGVKRIPQRDFGIPRFTYDEGLAQLYGDPPAWPTPTRGV SEIRLALRFKSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMTGLL NGQRGEWSAKWRMMCEGLDPLAPADENRLADIAAVWTDYLHHCKQQGLHFIQPGRFVL PGDMAGAPALQFFPWPDVDAWDESKLAQADKHTNAGMLRERFNYYCEKVVKGFYKNHF LRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKLLF AAMKADHVTVDQHANMVSLLQQLIQDAWQNAAFERISMDCLGLASVQATTSGIIDVNG EKIPALRGNRLSDGALLTVYPGEVPARLPGQAFWDKQGFQFEAFRPQVMDVDKPLPHI RLDAALEFLIGDKLR" misc_feature 1378998..1380392 /gene="ycjX" /locus_tag="SF1327" /note="Ras-like GTP-binding stress-induced protein YcjX, DUF463 family [Signal transduction mechanisms]; Region: YcjX; COG3106" /db_xref="CDD:442340" gene 1380392..1381453 /gene="ycjF" /locus_tag="SF1328" /db_xref="GeneID:1024281" CDS 1380392..1381453 /gene="ycjF" /locus_tag="SF1328" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707227.1" /db_xref="GeneID:1024281" /translation="MTEPLKPRIDFDGPLEVEQNPKFRAQQTFDENQAQNFAPATLDE AQEEEGQVEAVMDAALRPKRSLWRKMVMGGLALFGASVVGQGIQWTMNAWQTQDWVAL GGCAAGALIIGAGVGSVVTEWRRLWRLRQRAHERDEARDLLHSHGTGKGRAFCEKLAQ QAGIDQSHPALQRWYASIHETQNDREVVSLYAHLVQPVLDAQARREISRSAAESTLMI AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFKLVLLNIAFAGASELVR EVGMDWMSQDLAARLSTRAAQGIGAGLLTVRLGIKAMELCRPLPWIDDDKPRLGDFRR QLIGQVKETLQKGKTPSEK" misc_feature 1380551..1381414 /gene="ycjF" /locus_tag="SF1328" /note="TIGR01620 family protein; Region: hyp_HI0043" /db_xref="CDD:130681" gene 1381601..1383142 /gene="tyrR" /locus_tag="SF1329" /db_xref="GeneID:1024252" CDS 1381601..1383142 /gene="tyrR" /locus_tag="SF1329" /note="Code: K; COG: COG3283" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator TyrR" /protein_id="NP_707228.2" /db_xref="GeneID:1024252" /translation="MRLEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPIGRIYLNFA ELEFESFSSLMAEIRRIAGVTDVRTVPWMPSEREHLALSALLEALPEPVLSVDMKSKV DMANPASCQLFGQKLDRLRNHTAAQLINGFNFLRWLESEPQDSHNEHVVINGQNFLME ITPVYLQDENDQHVLTGAVVMLRSTIRMGRQLQNVAAQDVSAFSQIVAVSPKMKHVVE QAQKLAMLSAPLLITGDTGTGKDLFAYACHQASPRAGKPYLALNCASIPEDAVESELF GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVR VICATQKNLVELVQKGVFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ GVPRPKLAADLNTVLTRYAWPGNVRQLKNAIYRALTQLDGYELRPQDILLPDYDAATV AVGEDAMEGSLDEITSRFERSVLTQLYRNYPSTRKLAKRLGVSHTAIANKLREYGLSQ KKNEE" misc_feature 1381601..1383139 /gene="tyrR" /locus_tag="SF1329" /note="transcriptional regulator TyrR; Region: PRK10820" /db_xref="CDD:236769" gene complement(1383186..1383692) /gene="tpx" /locus_tag="SF1330" /db_xref="GeneID:1024307" CDS complement(1383186..1383692) /gene="tpx" /locus_tag="SF1330" /note="Code: O; COG: COG2077" /codon_start=1 /transl_table=11 /product="2-Cys peroxiredoxin" /protein_id="NP_707229.1" /db_xref="GeneID:1024307" /translation="MSQTVHFQGNPVTVANSIPQAGSKAQTFTLVAKDLSDVTLGQFA GKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLCISADLPFAQSRFCGAEGLNN VITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPDYE AALAVLKA" misc_feature complement(1383189..1383689) /gene="tpx" /locus_tag="SF1330" /note="thiol peroxidase; Region: tpx; PRK00522" /db_xref="CDD:179055" misc_feature complement(order(1383306..1383311,1383366..1383368, 1383414..1383416,1383432..1383437,1383522..1383524, 1383528..1383530)) /gene="tpx" /locus_tag="SF1330" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:239312" misc_feature complement(order(1383294..1383296,1383510..1383512, 1383519..1383521)) /gene="tpx" /locus_tag="SF1330" /note="catalytic triad [active]" /db_xref="CDD:239312" misc_feature complement(order(1383408..1383410,1383510..1383512)) /gene="tpx" /locus_tag="SF1330" /note="peroxidatic and resolving cysteines [active]" /db_xref="CDD:239312" gene 1383811..1384776 /gene="ycjG" /locus_tag="SF1331" /db_xref="GeneID:1027796" CDS 1383811..1384776 /gene="ycjG" /locus_tag="SF1331" /note="Code: H; COG: COG1441" /codon_start=1 /transl_table=11 /product="L-Ala-D/L-Glu epimerase" /protein_id="NP_707230.2" /db_xref="GeneID:1027796" /translation="MRIVKVFEEAWPLHTPFVIARGSRSEARVVVVELEEEGIKGTGE CTPYPRYGESDASVMAQIMSVVPQLEKGLTREELQKILPAGAARNALDCALWDLAARK QQQSLADLIGITLPETVITAQTVVIGTPDQMANSASTLWQAGAKLLKVKLDNHLISER MVAIRTAVPDATLIVDANESWRAEGLAARCQLLADLGVAMLEQPLPAQDDAALENFIH PLPICADESCHTRSNLKALKGRYEMVNIKLDKTGGLTEALALATEARAQGFSLMLGCM LCTSRAISAALPLVPQVSFADLDGPTWLAVDVEPALQFTTGELHL" misc_feature 1383811..1384773 /gene="ycjG" /locus_tag="SF1331" /note="L-Ala-D/L-Glu epimerase; Provisional; Region: PRK15129" /db_xref="CDD:185083" gene complement(1384751..1385479) /gene="ycjI" /locus_tag="SF1332" /db_xref="GeneID:1024279" CDS complement(1384751..1385479) /gene="ycjI" /locus_tag="SF1332" /note="Code: E; COG: COG2866" /codon_start=1 /transl_table=11 /product="murein peptide amidase A" /protein_id="NP_707231.2" /db_xref="GeneID:1024279" /translation="MTVTRSRAERGAFPPGTEHYGRSLLGAPLIWFPAPAASRESGLI LAGTHGDENSSVVTLSCALRTLTPSLRRHHVVLCVNPDGCQLGLRANANGVDLNRNFP AANWKEGETVYRWNSAAEERDVVLLTGDKPGSEPETQALCQLIHRIQPAWVVSFHDPL ACIEDPRHNELGEWLAQSFELPLVTSVGYETPGSFGSWCADLNLHCITAEFPPISSDE ASEKYLFAMANLLRWHPKDAIRPS" misc_feature complement(1384769..1385479) /gene="ycjI" /locus_tag="SF1332" /note="murein tripeptide amidase MpaA; Region: PRK10602" /db_xref="CDD:182582" misc_feature complement(order(1384850..1384852,1384919..1384921, 1384991..1384993,1385006..1385011,1385183..1385188, 1385213..1385215,1385324..1385326,1385333..1385335)) /gene="ycjI" /locus_tag="SF1332" /note="active site" /db_xref="CDD:349475" gene complement(1385770..1386408) /locus_tag="SF1333" /db_xref="GeneID:1024302" CDS complement(1385770..1386408) /locus_tag="SF1333" /note="Code: R; COG: COG2910" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707232.2" /db_xref="GeneID:1024302" /translation="MKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYP TNSQIIMGDVLNHAALKQAMQGQDIVYANLTGEDLDIQANSVIAAMKACDVKRLIFVL SLGIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIEASGLEYTILRPAWLTDEDIIDYE LTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIGENIGINQPGTDGDKPFFM" misc_feature complement(1385797..1386405) /locus_tag="SF1333" /note="atypical (a) SDRs, subgroup 6; Region: SDR_a6; cd05267" /db_xref="CDD:187577" misc_feature complement(order(1385956..1385967,1386022..1386024, 1386034..1386036,1386100..1386108,1386184..1386192, 1386304..1386312,1386370..1386372,1386376..1386381, 1386385..1386387)) /locus_tag="SF1333" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187577" gene complement(1386426..1386956) /locus_tag="SF1334" /db_xref="GeneID:1024374" CDS complement(1386426..1386956) /locus_tag="SF1334" /note="Code: R; COG: COG1073" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707233.1" /db_xref="GeneID:1024374" /translation="MSITGVNIGRLFREGFSNYDPIGVLNAMASQRAKEARGGELQIN ELLPASLDAAKAHGLTERDVYEATDYYKTPRGQQPGGATKMLFSHAQKTLAWDAFAFT EVLLTQPVMVVVGEKVGAFGAYRDGLEVYGRAMVSQDRQLVSLPDFSHYELYDKPEAV QEALAKVIPFFNTHLG" misc_feature complement(1386432..>1386680) /locus_tag="SF1334" /note="Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; Region: FrsA; COG1073" /db_xref="CDD:440691" mobile_element complement(1387090..1388463) /mobile_element_type="insertion sequence:ISSfl2" gene 1387236..1388432 /locus_tag="SF1335" /db_xref="GeneID:1024278" CDS 1387236..1388432 /locus_tag="SF1335" /note="Code: L; COG: COG3547" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl2 transposase" /protein_id="NP_707234.1" /db_xref="GeneID:1024278" /translation="MTESSDYESVQVFIGVDVGKDTHHAVTINRSGKRVFDKALPNDE NKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAG EAKTDARNAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIR GLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKR LAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYP VLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGN KALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTF YTPQGS" misc_feature 1387272..1388408 /locus_tag="SF1335" /note="IS110 family transposase; Region: transpos_IS110; NF033542" /db_xref="CDD:468073" gene complement(1388446..1388808) /locus_tag="SF1336" /pseudogene="unknown" /db_xref="GeneID:1024285" gene complement(1388808..1389728) /gene="ycjY" /locus_tag="SF1337" /db_xref="GeneID:1024301" CDS complement(1388808..1389728) /gene="ycjY" /locus_tag="SF1337" /note="Code: R; COG: COG1073" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707236.1" /db_xref="GeneID:1024301" /translation="MMNNKVSFTNSNNPTISLSAVIYFPPKFDETRQYPAIVVSHPGG GVKEQTAGTYAEKLAEKGFVTIAYDASYQGESGGEPRQLENPYIRTEDVSAVIDYLTT LSYVDNTRIGAMGICAGAGYTANAAIQDRRIKAIGTVSAVNIGSMFRNGWENNVKSID ALPHIEAGSNARTSDISSEEYAIMPLAPMKEADAPNEELRQAWEYYHTPRAQYPTAPG YATLRSLNQIITYDAYHMAEVYLTQPMQIVAGSQAGSKWMSDDLYDRASSQDKRYHIV EGANHMDLYDGKAYVAEAISVLAPFFEETL" misc_feature complement(1388811..1389728) /gene="ycjY" /locus_tag="SF1337" /note="Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; Region: FrsA; COG1073" /db_xref="CDD:440691" gene 1389866..1390348 /gene="ycjZ" /locus_tag="SF1338" /pseudo /db_xref="GeneID:1024380" misc_feature 1389866..1390348 /gene="ycjZ" /locus_tag="SF1338" /note="Similar to Escherichia coli K12 transcriptional regulator LYSR-type gi: 1787589 (300 aa). BLAST with identity of 97% in 145 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element complement(1390302..1391565) /mobile_element_type="insertion sequence:IS600" gene complement(1390345..1391163) /locus_tag="SF1339" /db_xref="GeneID:1024272" CDS complement(1390345..1391163) /locus_tag="SF1339" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707237.1" /db_xref="GeneID:1024272" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHYSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(1390372..>1391163) /locus_tag="SF1339" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1391199..1391501) /locus_tag="SF1340" /db_xref="GeneID:1024407" CDS complement(1391199..1391501) /locus_tag="SF1340" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707238.1" /db_xref="GeneID:1024407" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(1391229..1391501) /locus_tag="SF1340" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" misc_feature 1391566..1394089 /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787622 (286 aa). BLAST with identity of 96% in 841 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element complement(1392018..1393348) /mobile_element_type="insertion sequence:IS2" gene complement(1392029..1392934) /locus_tag="SF1342" /db_xref="GeneID:1024267" CDS complement(1392029..1392934) /locus_tag="SF1342" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_707239.1" /db_xref="GeneID:1024267" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(1392032..1392934) /locus_tag="SF1342" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(1392892..1393302) /locus_tag="SF1343" /db_xref="GeneID:1024275" CDS complement(1392892..1393302) /locus_tag="SF1343" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_707240.3" /db_xref="GeneID:1024275" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(1392895..1393257) /locus_tag="SF1343" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 1394096..1394842 /locus_tag="SF1344" /db_xref="GeneID:1024375" CDS 1394096..1394842 /locus_tag="SF1344" /codon_start=1 /transl_table=11 /product="DnaC-like chromosome replication protein" /protein_id="NP_707241.4" /db_xref="GeneID:1024375" /translation="MKNIATGGVLERIRRLTPPYVTAPFRTVAEWREWQLAEGQKRCE EINRLNRQLRVEKILNRSGIQPLHRKCSFANYRAQNDGQRHALSQAKSIADELMTGCT NFVFSGKPGTGKNHLAAAIGNRLMAKGRSVIIVTVSDVMSVLHESYDNGKSGEKFLQE LCGVDLLVLDEIGMQRDTKNEQVVLNQIVDRRTASLRGVGMLTNINHAAMNTLLGERV MDRMVMNGGRWVNFNWESWRPNVSHSRVVK" misc_feature 1394096..1394839 /locus_tag="SF1344" /note="putative replication protein; Provisional; Region: PRK12377" /db_xref="CDD:183482" misc_feature 1394417..1394440 /locus_tag="SF1344" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1394420..1394443,1394603..1394605) /locus_tag="SF1344" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1394591..1394608 /locus_tag="SF1344" /note="Walker B motif; other site" /db_xref="CDD:99707" gene 1394857..1395279 /locus_tag="SF1345" /db_xref="GeneID:1024330" CDS 1394857..1395279 /locus_tag="SF1345" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707242.1" /db_xref="GeneID:1024330" /translation="MAKPFTPEQREELKTRIVELVHQDGRVTIRQLSDETGISRASVG RLCIELVASGDVYNSGYGLFPSEQARKDWQSARKKLSRVKVRKPVVVDPDLIWSLPDR EIRRYDRRLNIICRECRKSEAMQRVLAFYQGNFQEAIL" misc_feature 1394857..1395264 /locus_tag="SF1345" /note="Bacterial protein of unknown function (DUF977); Region: DUF977; pfam06163" /db_xref="CDD:310626" gene 1395280..1395693 /locus_tag="SF1346" /db_xref="GeneID:1024350" CDS 1395280..1395693 /locus_tag="SF1346" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707243.1" /db_xref="GeneID:1024350" /translation="MKLAIRLQLPLAFASKERSMEIKPEDELSNIVLFPIKEDDPRNQ VNFLYKPSERPYCHHASVRVDEKERQVRCKICGAVVEPFDWMLSVAKRETRLADDVRL LRQEEQERRRNIEKLIQIERNAKARIRRATKSRTE" gene 1395786..1396004 /locus_tag="SF1347" /db_xref="GeneID:1023742" CDS 1395786..1396004 /locus_tag="SF1347" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707244.1" /db_xref="GeneID:1023742" /translation="MVTLFRKKYPRKSRTTEFLFLILFIVLMTPISPQIFVWIIGKII EPVIELYNDVVWASFNTLHNKINPYKES" misc_feature 1395786..1395998 /locus_tag="SF1347" /note="Protein of unknown function (DUF4014); Region: DUF4014; pfam13198" /db_xref="CDD:338629" gene 1396006..1396371 /locus_tag="SF1348" /db_xref="GeneID:1024377" CDS 1396006..1396371 /locus_tag="SF1348" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707245.1" /db_xref="GeneID:1024377" /translation="MALTKKQRAELRMKFGGRCAYCGCELGEKWHADHVKPVIRFDGN MLHQERDDISNMVPECHPCNLHKHCSSLEDYRRIISDGRREFLASGKGKALVRMGLVE MKSDPVVFWFEKYQEGATA" misc_feature 1396018..1396206 /locus_tag="SF1348" /note="5-methylcytosine-specific restriction endonuclease McrA [Defense mechanisms]; Region: McrA; COG1403" /db_xref="CDD:441013" gene 1396368..1397033 /locus_tag="SF1349" /db_xref="GeneID:1026342" CDS 1396368..1397033 /locus_tag="SF1349" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707246.1" /db_xref="GeneID:1026342" /translation="MTTITKERLQWLANISGRDDIDDIDGGEIRELALIALASLEAEP VAECIVEDGGMCIDGFGEYVGHSLPDGMHELYAAPRMRQPDGWKAVAVAWKVTFTQVD QESNTFTAIYFYKAEVERWVRLHKACDFRADITPLYAAPAVPVAVNDDMAYAFHHALS DSSLGSDEIEEIKTGLRAAFANVTIQPEPIVPDEIGPNDSNTFDYVDGWNACRAAMLK GDK" gene 1397033..1397398 /locus_tag="SF1350" /db_xref="GeneID:1024274" CDS 1397033..1397398 /locus_tag="SF1350" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707247.1" /db_xref="GeneID:1024274" /translation="MINRTKLEHILEYARQQKCIGQLCKIPPGDMVEIVEMAMRKAGN SPVTLAGWISCSDAVPAEYCDVILLDDLGNVFPGSWDKVFCPTRGGNKMAFVDKDGVE VESSTHWMPLPEPPQEVNQ" misc_feature 1397183..1397383 /locus_tag="SF1350" /note="Protein of unknown function (DUF551); Region: DUF551; pfam04448" /db_xref="CDD:427954" gene 1397796..1398008 /locus_tag="SF1350a" /db_xref="GeneID:16608320" CDS 1397796..1398008 /locus_tag="SF1350a" /codon_start=1 /transl_table=11 /product="regulatory protein" /protein_id="YP_008439244.1" /db_xref="GeneID:16608320" /translation="MSHKCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVT RKDLCEVRIRTGQTEVAVFTAYEPEE" misc_feature 1397871..1397993 /locus_tag="SF1350a" /note="Hok/gef family; Region: HOK_GEF; pfam01848" /db_xref="CDD:426473" gene 1398245..1398496 /locus_tag="SF1350b" /db_xref="GeneID:16608321" CDS 1398245..1398496 /locus_tag="SF1350b" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439245.1" /db_xref="GeneID:16608321" /translation="MDITVCTYKPGGIVEKIKKLFSSKYAVIRRDDLSVIVEMDYFPE TPKSIMYRNGRKAIFLPMRVSDIMGNDKLLDELRVRASC" mobile_element complement(1398499..1399266) /mobile_element_type="insertion sequence:IS1" gene complement(1398514..1398909) /gene="insB" /locus_tag="SF1351" /db_xref="GeneID:1024273" CDS complement(1398514..1398909) /gene="insB" /locus_tag="SF1351" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707248.1" /db_xref="GeneID:1024273" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1398517..1398906) /gene="insB" /locus_tag="SF1351" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1398936..1399211) /gene="insA" /locus_tag="SF1352" /db_xref="GeneID:1024357" CDS complement(1398936..1399211) /gene="insA" /locus_tag="SF1352" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707249.1" /db_xref="GeneID:1024357" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQHYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1398939..1399190) /gene="insA" /locus_tag="SF1352" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1399345..1399944 /locus_tag="SF1353" /db_xref="GeneID:1024378" CDS 1399345..1399944 /locus_tag="SF1353" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707250.1" /db_xref="GeneID:1024378" /translation="MAHIQLVKQTSSGLLLPATPESCDFLHQIKIGEWIHADFKRVRN YAFHKRFFKLLQLGFDYWTPVGGAITPRERKLVSGFVDYLCESVGREHTPALSDAAEQ YLNTVATCRTRDTALLKSFDAFREWVTIQAGFYTEHIYPDGSRGRRAKSIAFANMDET EFQQVYKSVLNVLWNWILFRKFSSPEEVENVAAQLLEFA" misc_feature 1399357..1399938 /locus_tag="SF1353" /note="Protein of unknown function (DUF1367); Region: DUF1367; pfam07105" /db_xref="CDD:429295" gene 1399944..1400234 /locus_tag="SF1354" /db_xref="GeneID:1024366" CDS 1399944..1400234 /locus_tag="SF1354" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707251.1" /db_xref="GeneID:1024366" /translation="MVDLRKAARGQMCTVRIPGYCNHNPETSVLAHYRLAGTCGTATK PHDMQAAIACSSCHDLIDGRVKTSDYTKEELRLMHAEGVFRTQEIWRKEGYL" misc_feature 1399947..1400225 /locus_tag="SF1354" /note="Putative nuclease YbcO; Region: YbcO; pfam07102" /db_xref="CDD:429293" gene 1400231..1400785 /locus_tag="SF1355" /db_xref="GeneID:1024349" CDS 1400231..1400785 /locus_tag="SF1355" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707252.1" /db_xref="GeneID:1024349" /translation="MIYPTNTGKSGEHLRLTTLESVWIQGKLRMWGRWSYIGGGKTGN MFNQLLASKKLTKTAVNEALRRMKKAGIEKPELEAFLREMINGKQKTWLAHCTDAEAL CIDRVISEVLAEHPGLISVLRQRYEGRGMTKRKMAELLNDAHPEWCFRTCCSRVDVWL NLAEYMLYLPMRDAFSSGDLKTVC" misc_feature 1400231..1400755 /locus_tag="SF1355" /note="Protein of unknown function (DUF1133); Region: DUF1133; pfam06576" /db_xref="CDD:148278" mobile_element 1401109..1402372 /mobile_element_type="insertion sequence:IS600" gene 1401173..1401475 /locus_tag="SF1356" /db_xref="GeneID:1024356" CDS 1401173..1401475 /locus_tag="SF1356" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707253.1" /db_xref="GeneID:1024356" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 1401173..1401445 /locus_tag="SF1356" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1401511..1402329 /locus_tag="SF1357" /db_xref="GeneID:1024398" CDS 1401511..1402329 /locus_tag="SF1357" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707254.1" /db_xref="GeneID:1024398" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <1401511..1402302 /locus_tag="SF1357" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" misc_feature 1402373..1424262 /note="ipaH island II" gene 1402922..1403293 /locus_tag="SF1359" /db_xref="GeneID:1024413" CDS 1402922..1403293 /locus_tag="SF1359" /codon_start=1 /transl_table=11 /product="tail fiber assembly protein" /protein_id="NP_707256.1" /db_xref="GeneID:1024413" /translation="MVWVGKDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFV FDYRLKAEDERDALLAQVSARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFS TITDKSSYNAIEWPASPEGSS" misc_feature 1402967..1403281 /locus_tag="SF1359" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; cl17077" /db_xref="CDD:450149" gene 1403317..1404585 /locus_tag="SF1360" /db_xref="GeneID:1027508" CDS 1403317..1404585 /locus_tag="SF1360" /codon_start=1 /transl_table=11 /product="tail fiber protein" /protein_id="NP_707257.2" /db_xref="GeneID:1027508" /translation="MSVVISGALTDGAGIPMSGYHIILKSRVNPPEVVMNTVADVMTG NDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDV VKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTAN HLSEIAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPED VIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYR AKSLTFYGINGPIYHTRYRYWPISRLTDWVKINITTEDIIYRIVASSVRNRWGDPDIG GLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIASPQFFITGCSE HSLPGSYCALSGVPDAHVSGAMPGLFIRTS" misc_feature 1403317..1403706 /locus_tag="SF1360" /note="Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; Region: Peptidase_M14NE-CP-C_like; cl21470" /db_xref="CDD:473874" gene 1404596..1405159 /locus_tag="SF1361" /db_xref="GeneID:1024316" CDS 1404596..1405159 /locus_tag="SF1361" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707258.2" /db_xref="GeneID:1024316" /translation="MEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQ QIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKPLTFEWNGRIWNA GPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDE IYRRQRELKEELNSLKDLNSVRNFIVE" misc_feature 1404821..1405144 /locus_tag="SF1361" /note="Domain of unknown function (DUF4376); Region: DUF4376; pfam14301" /db_xref="CDD:433852" gene complement(1405360..1406217) /gene="sitD" /locus_tag="SF1362" /db_xref="GeneID:1024364" CDS complement(1405360..1406217) /gene="sitD" /locus_tag="SF1362" /note="Code: P; COG: COG1108" /codon_start=1 /transl_table=11 /product="iron transporter inner membrane protein" /protein_id="NP_707259.1" /db_xref="GeneID:1024364" /translation="MMALLLEPLQFTFMSHALLISLVVSIPCALLSVFLVLKGWALMG DAMSHAVFPGIVLTWILGLPLATGAFVAGVFCAVATGYLKDNSRIKQDTVMGIVFSGM FAAGLILYIAIKPDVHLDHILFGDMLGITIGDIIQTVIIAGLVTLVISVKWRDFLLFS FDYQQAQVSGLHTRWLHYGLLCMVSLTIVATLKAVGIILSISLLIAPGAIAVLLTQRF HIALLLATGISVIVSMTGVWLSFFIDSAPAPTIVVLFAVVFIMTFTVTSINARTKGNA HTQDLLSPN" misc_feature complement(1405414..1406187) /gene="sitD" /locus_tag="SF1362" /note="ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108" /db_xref="CDD:440725" gene complement(1406214..1407071) /gene="sitC" /locus_tag="SF1363" /db_xref="GeneID:1024595" CDS complement(1406214..1407071) /gene="sitC" /locus_tag="SF1363" /note="Code: P; COG: COG1108" /codon_start=1 /transl_table=11 /product="iron ABC transporter permease" /protein_id="NP_707260.1" /db_xref="GeneID:1024595" /translation="MNVLLEPFSYEYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGD ALSHSIVPGVAGAYMLGLPFSLGAFFSGGLAAGSMLFLNQRTRLKEDAIIGLIFSSFF GLGLFMVSLNPTSVNIQTIVLGNILAIDPADILQLTIIGILSIIVLFFKWKDLMVTFF DENHARAIGLHPGRLKILFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFP RLLIIAVTIGSVTSFLGAWVSYFLDGATGGIIVVAQTLLFLLAFVFAPTHGLLANRRR AHKALEDRS" misc_feature complement(1406268..1407044) /gene="sitC" /locus_tag="SF1363" /note="ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108" /db_xref="CDD:440725" gene complement(1407068..1407895) /gene="sitB" /locus_tag="SF1364" /db_xref="GeneID:1024345" CDS complement(1407068..1407895) /gene="sitB" /locus_tag="SF1364" /note="Code: P; COG: COG1121" /codon_start=1 /transl_table=11 /product="iron ABC transporter ATP-binding protein" /protein_id="NP_707261.1" /db_xref="GeneID:1024345" /translation="MMQSAGIVVNDVTVTWRNGHTALRDASFTVPSGSIAALVGVNGS GKSTLFKAIMGFVRLTSGKISVLGIPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVM MGRYGHMGMLRIAKKRDRQIVTDALERVDMVDFRHRQIGELSGGQKKRVFLARAIAQQ GDVILLDEPFTGVDVKTEAKIISLLRELRAEGKTMLVSTHNLGSVTTFCDYTVMVKGT VLASGPTDTTFTAENLELAFSGVLRHVTLNGSEESIITDDERPFVAHRPSAVQREAR" misc_feature complement(1407080..1407895) /gene="sitB" /locus_tag="SF1364" /note="manganese/iron ABC transporter ATP-binding protein; Region: PRK15056" /db_xref="CDD:185016" gene complement(1407895..1408785) /gene="sitA" /locus_tag="SF1365" /db_xref="GeneID:1024343" CDS complement(1407895..1408785) /gene="sitA" /locus_tag="SF1365" /note="Code: P; COG: COG0803" /codon_start=1 /transl_table=11 /product="iron ABC transporter substrate-binding protein" /protein_id="NP_707262.2" /db_xref="GeneID:1024343" /translation="MLLGCLALTCSIAFQASATEKFKVITTFTIIADMAKNVAGDAAE VSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGMNLELWFQRFYQHLNGVPEVIVSS GVTPVGITEGPYEGKPNPHAWMSPDNALIYVDNIRDALIKYDPANAQTYQRNADTYKA KITQTLAPLRKQITELPENQRWMVTSEGAFSYLARDLGLKELYLWPINADQQGTPQQV RKVVDIVKKNHIPAVFSESTISDKPARQVARETGAHYGGVLYVDSLSTENGPVPTYID LLKVTTSTLVQGIKAGKREK" misc_feature complement(1407916..1408782) /gene="sitA" /locus_tag="SF1365" /note="Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that...; Region: PsaA; cd01137" /db_xref="CDD:238557" misc_feature complement(order(1408000..1408002,1408225..1408227, 1408423..1408425,1408618..1408620)) /gene="sitA" /locus_tag="SF1365" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238557" misc_feature complement(1409241..1410820) /note="Similar to Escherichia coli K12 transposase gi: 1787607 (412 aa). BLAST with identity of 96% in 525 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element 1409881..1410648 /mobile_element_type="insertion sequence:IS1" gene 1409936..1410211 /gene="insA" /locus_tag="SF1366" /db_xref="GeneID:1024313" CDS 1409936..1410211 /gene="insA" /locus_tag="SF1366" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707263.1" /db_xref="GeneID:1024313" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 1409957..>1410208 /gene="insA" /locus_tag="SF1366" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1410238..1410633 /gene="insB" /locus_tag="SF1367" /db_xref="GeneID:1024597" CDS 1410238..1410633 /gene="insB" /locus_tag="SF1367" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707264.1" /db_xref="GeneID:1024597" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 1410241..1410630 /gene="insB" /locus_tag="SF1367" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" mobile_element complement(1410995..1411844) /note="partial" /mobile_element_type="insertion sequence:IS629" gene complement(1411037..1411657) /locus_tag="SF1370" /db_xref="GeneID:1024414" CDS complement(1411037..1411657) /locus_tag="SF1370" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 integrase core domain-containing protein" /protein_id="NP_707266.2" /db_xref="GeneID:1024414" /translation="MAVMGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPEQLWV ADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVH HSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNR AEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA" misc_feature complement(1411040..>1411657) /locus_tag="SF1370" /note="DDE superfamily endonuclease; Region: DDE_3; cl46863" /db_xref="CDD:481203" mobile_element complement(1411842..1412350) /note="partial" /mobile_element_type="insertion sequence:IS629" gene complement(1411970..1412296) /locus_tag="SF1371" /db_xref="GeneID:1024321" CDS complement(1411970..1412296) /locus_tag="SF1371" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_707267.1" /db_xref="GeneID:1024321" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature complement(1412006..1412293) /locus_tag="SF1371" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(1412371..1413414) /locus_tag="SF1372" /db_xref="GeneID:1024326" CDS complement(1412371..1413414) /locus_tag="SF1372" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707268.2" /db_xref="GeneID:1024326" /translation="MGFAGDGKTYTASELAIGLVMLMRQRGIEAGNRPVMFLDTETGS DWVKPRFDAENIELFTAKTRSFVDLLEAINEAESSGSVMIIDSISHFWTGLCDEYARR RNRKRGLEFSDWAWLKQEWRRFTDRFVNSQAHIIMCGRAGYEYDFFEGDDGKRQLAKT GIKMKAETETGYEPSIRIQMEKQMNIETGQVWRTARILKDRSTRIDGQVFSNPTFKNF LPHIESLNLGGEHPGIDTSRDNSELFANDGTPTWLKEKRAKEIALDEIIELLNKHHGG TSNDAKRAKADLLEKTFTSRSWERIKGMDWPTIKAGRNALWIELEGVEYAFPDPQTQN ETQQAGYDENIPV" misc_feature complement(<1412920..1413411) /locus_tag="SF1372" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" gene complement(1413474..1413794) /locus_tag="SF1373" /db_xref="GeneID:1024361" CDS complement(1413474..1413794) /locus_tag="SF1373" /codon_start=1 /transl_table=11 /product="host-nuclease inhibitor protein Gam" /protein_id="NP_707269.1" /db_xref="GeneID:1024361" /translation="MSVKLRLPQSAYPIFDRIEEMAWARHYQQIVREEKETELADDLE KGLPQHLFESLCIDHLQRHGANKQAISHAFDDDVEFQERMAEHIRYMAETIAHHQVDI DLED" misc_feature complement(1413480..1413767) /locus_tag="SF1373" /note="Host-nuclease inhibitor protein Gam; Region: Gam; pfam06064" /db_xref="CDD:399215" mobile_element 1413769..1415032 /mobile_element_type="insertion sequence:IS600" gene 1414276..1414989 /locus_tag="SF1374" /pseudogene="unknown" /db_xref="GeneID:1024502" gene complement(1415037..1416461) /locus_tag="SF1375" /db_xref="GeneID:1024410" CDS complement(1415037..1416461) /locus_tag="SF1375" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VIII" /protein_id="NP_707271.1" /db_xref="GeneID:1024410" /translation="MNTDKQVYPLYYEAKNDKVRKRLGIKGGFYWAEAKKLSIAISRG AVAIDDAGYDEDDFKKPVRVNLPVVDDLPPEGVFDTEFCNRYEKGGEDGITMVFIASS PSVQDKPASTDNTNVNGEDMTEIEENMLLPVSGQELPIRWLAQHGSEKPVTHVSRDEL QALHIARDEELPAVTALAVSHKTSLLDPLEIRDLHKLVRDTDRVFPNPGNSSLGLMTA FFEAYMDADYTDRGLLTKEWMKGNRVSRITRTASGANAGGGNLTDRGEGFVHDLTSLA RDVATGVLARSMDVDIYNLHPAHAKRVEEIIAENKPPFSVFRDKFITMPGGMDYSRAI VVASVKEAPIGIEVIPAHVTEYLNKVLTETDHANPDPEIVDIACGRSSAPMPQRVTEE GKQDDEEKTQPSGAMADEQATAETMEPDATEHHQNTQPLDAQSQVNSVDEKYQELRAE LHEARKNIPPKNPVDADKLLAALR" misc_feature complement(<1415040..1416461) /locus_tag="SF1375" /note="exodeoxyribonuclease VIII; Region: PRK09709" /db_xref="CDD:236615" gene complement(1416561..1416836) /locus_tag="SF1376" /db_xref="GeneID:1024424" CDS complement(1416561..1416836) /locus_tag="SF1376" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707272.2" /db_xref="GeneID:1024424" /translation="MITSYEATVVTTDDIVHEVNLEGKRIGYVIKTENKETPFTVVDI DGPSGNVKTLNDGVKKMCLVHIGKNLPAEKKAEFLATLIAMKLKGEI" misc_feature complement(1416564..1416836) /locus_tag="SF1376" /note="hypothetical protein; Reviewed; Region: PRK09790" /db_xref="CDD:182076" gene complement(1417081..1417302) /gene="kil" /locus_tag="SF1377" /db_xref="GeneID:1023370" CDS complement(1417081..1417302) /gene="kil" /locus_tag="SF1377" /codon_start=1 /transl_table=11 /product="FtsZ inhibitor protein" /protein_id="NP_707273.1" /db_xref="GeneID:1023370" /translation="MIAHHFGTDEIPRQCVTPGDYVLHEGRTYIASANNIKKRKLYIR SLTTKTCISDCMIKVFLGRDGLPVKAESW" misc_feature complement(1417084..1417302) /gene="kil" /locus_tag="SF1377" /note="FtsZ inhibitor protein; Reviewed; Region: kil; PRK11354" /db_xref="CDD:236900" mobile_element complement(1417368..1418698) /mobile_element_type="insertion sequence:IS2" gene complement(1417379..1418284) /locus_tag="SF1378" /db_xref="GeneID:1024420" CDS complement(1417379..1418284) /locus_tag="SF1378" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_707274.1" /db_xref="GeneID:1024420" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(1417382..1418284) /locus_tag="SF1378" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(1418242..1418652) /locus_tag="SF1379" /db_xref="GeneID:1026350" CDS complement(1418242..1418652) /locus_tag="SF1379" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_707275.1" /db_xref="GeneID:1026350" /translation="MIVLIPVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(1418245..1418607) /locus_tag="SF1379" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene complement(1418649..1418905) /locus_tag="SF1380" /pseudogene="unknown" /db_xref="GeneID:1024431" mobile_element complement(1420679..1421142) /note="partial" /mobile_element_type="insertion sequence:ISSfl4" gene 1421321..1421884 /locus_tag="SF1382" /db_xref="GeneID:1024415" CDS 1421321..1421884 /locus_tag="SF1382" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707278.1" /db_xref="GeneID:1024415" /translation="MEIKKIINPRYTESGAVDCDVFFDDRDQAVPYTATADDVAPTGQ QIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRAEQEAKPLTFEWNGRIWNA GPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDE IYRRQREMKEELSGLDDLASIRAFDVE" misc_feature 1421546..1421869 /locus_tag="SF1382" /note="Domain of unknown function (DUF4376); Region: DUF4376; pfam14301" /db_xref="CDD:433852" gene complement(1422064..1423779) /gene="ipaH_3" /locus_tag="SF1383" /db_xref="GeneID:1024395" CDS complement(1422064..1423779) /gene="ipaH_3" /locus_tag="SF1383" /codon_start=1 /transl_table=11 /product="invasion plasmid antigen" /protein_id="NP_707279.1" /db_xref="GeneID:1024395" /translation="MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGE NRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPELPASL EYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPT SLEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL HRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQ VAAWLEKLSTSAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDT GALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRF YGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEADRWAQAEEQKYEM LENEYSQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQVTDEVLALRLSENGS QLHHS" misc_feature complement(1422109..1423698) /gene="ipaH_3" /locus_tag="SF1383" /note="type III secretion system effector E3 ubiquitin transferase SlrP; Region: PRK15370" /db_xref="CDD:185268" misc_feature complement(1423537..1423593) /gene="ipaH_3" /locus_tag="SF1383" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature complement(1423360..1423416) /gene="ipaH_3" /locus_tag="SF1383" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature complement(1423297..1423356) /gene="ipaH_3" /locus_tag="SF1383" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature complement(1423138..1423236) /gene="ipaH_3" /locus_tag="SF1383" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature complement(1423027..1423083) /gene="ipaH_3" /locus_tag="SF1383" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" mobile_element 1424266..1425033 /mobile_element_type="insertion sequence:IS1" gene 1424623..1425018 /gene="insB" /locus_tag="SF1385" /db_xref="GeneID:1024438" CDS 1424623..1425018 /gene="insB" /locus_tag="SF1385" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707281.1" /db_xref="GeneID:1024438" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 1424626..1425015 /gene="insB" /locus_tag="SF1385" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 1425295..1427221 /gene="pphA" /locus_tag="SF1386" /pseudo /db_xref="GeneID:1024392" misc_feature 1425295..1427221 /gene="pphA" /locus_tag="SF1386" /note="'Similar to Escherichia coli K12 protein phosphatase 1 modulates phosphoproteins, signals protein misfolding gi: 1788143 (220 aa). BLAST with identity of 99% in 642 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'" /pseudo mobile_element 1425745..1427008 /mobile_element_type="insertion sequence:IS600" gene 1426147..1426965 /locus_tag="SF1387" /db_xref="GeneID:1024441" CDS 1426147..1426965 /locus_tag="SF1387" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707282.1" /db_xref="GeneID:1024441" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHYSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <1426147..1426938 /locus_tag="SF1387" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1427222..1427497) /locus_tag="SF1388" /db_xref="GeneID:1024419" CDS complement(1427222..1427497) /locus_tag="SF1388" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707283.1" /db_xref="GeneID:1024419" /translation="MAGYLSWLFPRCKISPKLNGTAPHFGDEMFALVLFVCYLDGGCE DIVVDVYNTEQQCLYSMSDQRIRHGSCFPIEDFIDGFWQPAQEYGDF" misc_feature complement(1427243..1427413) /locus_tag="SF1388" /note="Protein of unknown function (DUF1482); Region: DUF1482; pfam07358" /db_xref="CDD:369331" gene complement(1427518..1427754) /locus_tag="SF1389" /db_xref="GeneID:1024483" CDS complement(1427518..1427754) /locus_tag="SF1389" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707284.2" /db_xref="GeneID:1024483" /translation="MKTSVRIGAFEIDDGELHGESPGDRTLTIPCKSDPDLCMQLDAW DAETSIPALLNGEHSVLYRTRYDQQSDAWIMRLA" misc_feature complement(1427524..1427751) /locus_tag="SF1389" /note="Protein of unknown function (DUF1480); Region: DUF1480; pfam07351" /db_xref="CDD:429421" gene complement(1428046..1429266) /gene="yebU" /locus_tag="SF1390" /db_xref="GeneID:1024637" CDS complement(1428046..1429266) /gene="yebU" /locus_tag="SF1390" /note="Code: J; COG: COG0144" /codon_start=1 /transl_table=11 /product="16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF" /protein_id="NP_707285.3" /db_xref="GeneID:1024637" /translation="MREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAP YGWTLTPIPWCEEGFWIERDNEDALPLGSTTEHLSGLFYIQEASSMLPVAALFADGNA PQRVMDVAAAPGSKTTQIAARMNNEGAILANEFSASWVKVLHANISRCGISNVALTHF GGRVFGAAVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAF HALRPGGTLVYSTCTLNREENEAVCRWLKETYPDEVEFLPLGDLFPGANKALTEEGFL HVFPQIYDCEGFFVARLRKTQAIPALPAPKYKVGNFPFSPVKDREAGQIRQAAASVGL NWDGNLRLWQRDKELWLFPVGIEALIGKVRFSRLGIKLAETHNKGYRWQHEAVIAHAS PDNVNAFELTPQEA" misc_feature complement(1428049..1429266) /gene="yebU" /locus_tag="SF1390" /note="rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed; Region: yebU; PRK11933" /db_xref="CDD:183387" gene complement(1429391..1432017) /locus_tag="SF1391" /pseudo /db_xref="GeneID:1024616" misc_feature complement(1429391..1432017) /locus_tag="SF1391" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788138 (880 aa). BLAST with identity of 97% in 875 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1431980..1433263) /locus_tag="SF1392" /db_xref="GeneID:1024417" CDS complement(1431980..1433263) /locus_tag="SF1392" /note="Code: S; COG: COG2995" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707286.1" /db_xref="GeneID:1024417" /translation="MALNTPQITPTKKITVRAIGEELPRGDYQRCPQCDMLFSLPEIN SHQSAYCPRCQAKIRDGRDWSLTRLAAMAFTMLLLMPFAWGEPLLHIWLLGIRIDANV MQGIWQMTKQGDAITGSMVFFCVIGAPLILVSSIAYLWFGNRLGMNLRPVLLMLERLK EWVMLDIYLVGIGVASIKVQDYAHIQAGVGLFSFVALVILTTVTLSHLNVEELWERYY PQRPATRRDEKLRVCLGCHFTGYPDQRGLCPRCHIPLRLRRRHSLQKCWAALLASIVL LLPANLLPISIIYLNGGRQEDTILSGIMSLASSNIAVAGIVFIASILVPFTKVIVMFT LLLSIHFKCQQGLRTRILLLRMVTWIGRWSILDLFVISLTMSLINRDQILAFTMGPAA FYFGAAVILTILAVEWLDSRLLWDAHESGNARFDD" misc_feature complement(1432013..1433218) /locus_tag="SF1392" /note="integral membrane protein, PqiA family; Region: pqiA_fam; TIGR00155" /db_xref="CDD:272933" gene 1433393..1433890 /locus_tag="SF1393" /db_xref="GeneID:1024607" CDS 1433393..1433890 /locus_tag="SF1393" /note="Code: T; COG: COG1956" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707287.1" /db_xref="GeneID:1024607" /translation="MNKTEFYADLNRDFNALMAGETSFLATLANTSALLYERLTDVNW AGFYLLEDDTLVLGPFQGKIACVRIPVGRGVCGTAVARNQVQRIEDVHAFDGHIACDA ASNSEIVLPLVVKNQIIGVLDIDSTVFARFTDEDEQGLRQLVAQLEKVLATTDYKKFF ASVAG" misc_feature 1433393..1433851 /locus_tag="SF1393" /note="GAF domain-containing protein, putative methionine-R-sulfoxide reductase [Defense mechanisms, Signal transduction mechanisms]; Region: MsrC; COG1956" /db_xref="CDD:441559" gene 1433987..1434685 /gene="yebJ" /locus_tag="SF1394" /db_xref="GeneID:1024553" CDS 1433987..1434685 /gene="yebJ" /locus_tag="SF1394" /experiment="mass spectrum study" /note="Code: T; COG: COG3109" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707288.3" /db_xref="GeneID:1024553" /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVD RVAGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELDEQHVEHARKQ LEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPTTPRRKEGAERKPRAQK PVEKAPKTVKAPREEQHTPVSDISALTVGQALKVKAGQNAMDATVLEITKDGVRVQLN SGMSLIVRAEHLVF" misc_feature 1433987..1434682 /gene="yebJ" /locus_tag="SF1394" /note="ProP expression regulator; Provisional; Region: PRK04950" /db_xref="CDD:235322" gene 1434711..1436753 /gene="prc" /locus_tag="SF1395" /db_xref="GeneID:1024381" CDS 1434711..1436753 /gene="prc" /locus_tag="SF1395" /note="Code: M; COG: COG0793" /codon_start=1 /transl_table=11 /product="carboxy-terminal protease" /protein_id="NP_707289.4" /db_xref="GeneID:1024381" /translation="MFFRLTALAGLLAIAGQTFAVEDITRADQIPVLKEETQHATVSE RVTSRFTRSHYRQFDLDQAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTELGDEL RSGKLDVFYDLYNLAQKRRFERYQYALSVLEKPMDFTGNDTYNLDRSKAPWPKNEAEL NAQWDSKVKFDELSLKLTGKTDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAFAR EIDPHTNYLSRRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSMVAGGPAAKSKAISV GAKIVGVGQTGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRTVTLTRE RIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVSSVIIDLRS NGGGALTEAVSLSGLFIPAGPIVQVRDNNGKVREDSDTDGQVFYKGPLVVLVDRFSAS ASEIFAAAMQDYGRALVVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTIQK FYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAATYVKSGDLTAFE PELLKEHNARIAKDPEFQNIMKDIARFNAMKDKRNIVSLNYAVREKENNEDDATRLAR LNERFKREGKPELKKLDDLSKDYQEPDPYLDETVNIALDLAKLEKARPAEQPAPVK" misc_feature 1434714..1436726 /gene="prc" /locus_tag="SF1395" /note="carboxy terminal-processing peptidase; Region: PRK11186" /db_xref="CDD:236873" gene 1436948..1437826 /gene="htpX" /locus_tag="SF1396" /db_xref="GeneID:1024421" CDS 1436948..1437826 /gene="htpX" /locus_tag="SF1396" /note="Code: O; COG: COG0501" /codon_start=1 /transl_table=11 /product="heat shock protein HtpX" /protein_id="NP_707290.2" /db_xref="GeneID:1024421" /translation="MRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLMIMALLFGFG GSFVSLLMSKWMALRSVGGEVIEQPRNERERWLVNTVATQARQAGIAMPQVAIYHAPD INAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVNT FVIFISRILAQLAAGFMGGNRDEGEESNGNPLIYFAVATVLELVFGILASIITMWFSR HREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTHP PLDKRIEALRTGEYLK" misc_feature 1436948..1437814 /gene="htpX" /locus_tag="SF1396" /note="protease HtpX; Region: PRK05457" /db_xref="CDD:235478" gene complement(1437872..1439356) /locus_tag="SF1397" /db_xref="GeneID:1024613" CDS complement(1437872..1439356) /locus_tag="SF1397" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707291.1" /db_xref="GeneID:1024613" /translation="MVAIHLLPVSYNSATSTVNISARIIPLLIIHQRYKIPMPKVQAD GLPLPQRYGAILTIVIGISMAVLDGAIANVALPTIATDLHATPASSIWVVNAYQIAIV ISLLSFSFLGDMFGYRRIYKCGLVVFLLSSLFCALSDSLQMLTLARVIQGFGGAALMS VNTALIRLIYPQRFLGRGMGINSFIVAVSSAAGPTIAAAILSIASWKWLFLINVPLGI IALLLAMRFLPPNGSRASKPRFDLPSAVMNALTFGLLITALSGFAQGQSLTLIAAELV VMVVVGIFFIRRQLSLPVPLLPVDLLRIPLFSLSICTSVCSFCAQMLAMVSLPFYLQT VLGRSEVETGLLLTPWPLATMVMAPLAGYLIERVHAGLLGALGLFIMATGLFSLVLLP ASPADINIIWPMILCGAGFGLFQSPNNHTIITSAPRERSGGASGMLGTARLLGQSSGA ALVALMLNQFGDNGTHVSLMAAAILAVIAACVSGLRITQPRARA" misc_feature complement(1437893..1439185) /locus_tag="SF1397" /note="Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily; Region: MFS_MMR_MDR_like; cd17321" /db_xref="CDD:340879" misc_feature complement(order(1438019..1438021,1438028..1438033, 1438040..1438045,1438052..1438054,1438100..1438102, 1438112..1438114,1438124..1438129,1438283..1438285, 1438295..1438297,1438379..1438381,1438388..1438396, 1438403..1438408,1438415..1438417,1438787..1438789, 1438796..1438801,1438808..1438810,1438868..1438870, 1438877..1438885,1438889..1438894,1439042..1439044, 1439138..1439140,1439147..1439152,1439159..1439164)) /locus_tag="SF1397" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340879" gene 1439422..1440213 /locus_tag="SF1398" /db_xref="GeneID:1024615" CDS 1439422..1440213 /locus_tag="SF1398" /note="Code: K; COG: COG1414" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator KdgR" /protein_id="NP_707292.1" /db_xref="GeneID:1024615" /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS KSTVYRFLQTMKTLGYVAQEGVSEKYSLTLKLVELGARALQNVDLIRSADIQMREISR LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV KQILEGVEYKRSTERTITSTEALLPVLDQVREQGYGEDNEEQEEGLQCIAVPVFDRFG VVIAGLSISFPTLRFSEERLQEYVAMLHTAARKISAQMGYHDYPF" misc_feature 1439431..1440201 /locus_tag="SF1398" /note="DNA-binding transcriptional regulator KdgR; Provisional; Region: PRK15090" /db_xref="CDD:185046" gene complement(1440356..1440595) /locus_tag="SF1399" /db_xref="GeneID:1024555" CDS complement(1440356..1440595) /locus_tag="SF1399" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707293.1" /db_xref="GeneID:1024555" /translation="MRFIIRTVMLIALVWIGLLLSGYGVLIGSKENAAGLGLQCTYLT ARGTSTVQYLHTKSGFLEITDCPLLRKSNIVVDNG" misc_feature complement(1440383..1440592) /locus_tag="SF1399" /note="YobH-like protein; Region: YobH; pfam13996" /db_xref="CDD:433635" gene 1440754..1440897 /locus_tag="SF1400" /db_xref="GeneID:1024614" CDS 1440754..1440897 /locus_tag="SF1400" /codon_start=1 /transl_table=11 /product="PhoPQ regulatory protein" /protein_id="NP_707294.1" /db_xref="GeneID:1024614" /translation="MKKFRWVVLVVVVLACLLLWAQVFNMMCDQDVQFFSGICAINQF IPW" misc_feature 1440754..1440894 /locus_tag="SF1400" /note="PhoP/PhoQ regulator MgrB; Region: PRK10299" /db_xref="CDD:182364" gene 1440972..1441259 /locus_tag="SF1401" /db_xref="GeneID:1024604" CDS 1440972..1441259 /locus_tag="SF1401" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707295.1" /db_xref="GeneID:1024604" /translation="MNEVVNSGVMNIASLVVSVVVLLIGLILWFFINRASSRTNEQIE LLEALLDQQKRQNALLRRLCEANEPEKADKKTIESQKSVDDEDIIRLVAER" misc_feature 1441041..1441256 /locus_tag="SF1401" /note="YebO-like protein; Region: YebO; pfam13974" /db_xref="CDD:433617" gene 1441929..1442072 /locus_tag="SF1402" /db_xref="GeneID:1027798" CDS 1441929..1442072 /locus_tag="SF1402" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707296.1" /db_xref="GeneID:1027798" /translation="MCGIFSKEVLSKHVDVEYRFSAEPYIGASCSNVSVLSMLCLRAK KTI" misc_feature 1441929..1442042 /locus_tag="SF1402" /note="Protein of unknown function (DUF2627); Region: DUF2527; pfam10736" /db_xref="CDD:119256" gene 1442085..1442294 /gene="cspC" /locus_tag="SF1403" /db_xref="GeneID:1024611" CDS 1442085..1442294 /gene="cspC" /locus_tag="SF1403" /note="Code: K; COG: COG1278" /codon_start=1 /transl_table=11 /product="cold shock-like protein CspC" /protein_id="NP_707297.1" /db_xref="GeneID:1024611" /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGLKTL AEGQNVEFEIQDGQKGPAAVNVTAI" misc_feature 1442085..1442291 /gene="cspC" /locus_tag="SF1403" /note="cold shock-like protein CspC; Provisional; Region: PRK10943" /db_xref="CDD:170841" misc_feature order(1442112..1442114,1442139..1442141,1442172..1442174, 1442259..1442261) /gene="cspC" /locus_tag="SF1403" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature order(1442130..1442150,1442169..1442180) /gene="cspC" /locus_tag="SF1403" /note="RNA-binding motif [active]" /db_xref="CDD:239905" gene 1442460..1443269 /gene="rrmA" /locus_tag="SF1404" /db_xref="GeneID:1023369" CDS 1442460..1443269 /gene="rrmA" /locus_tag="SF1404" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="23S rRNA (guanine(745)-N(1))-methyltransferase" /protein_id="NP_707298.1" /db_xref="GeneID:1023369" /translation="MSFSCPLCHQPLSREKNSYICPQRHQFDMAKEGYVNLLPVQHKR SRDPGDSAEMMQARRAFLDAGHYQPLRDAIVAQLRERLDEKATAVLDIGCGEGYYTHA FADALPEITTFGLDVSKVAIKAAAKRYPQVTLCVASSHRLPFSDTSMDAIIRIYAPCK AEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGFTLQQSAELCY PMRLRGDEAVALLQMTPFAWRAKPEVWQTLAAKEVFDCQTDFNIHLWQRSY" misc_feature 1442460..1443266 /gene="rrmA" /locus_tag="SF1404" /note="23S rRNA methyltransferase A; Provisional; Region: rrmA; PRK11088" /db_xref="CDD:236841" misc_feature order(1442733..1442753,1442805..1442810,1442868..1442876, 1442922..1442924) /gene="rrmA" /locus_tag="SF1404" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1443266..1443833) /locus_tag="SF1405" /pseudogene="unknown" /db_xref="GeneID:1026363" mobile_element complement(1444281..1445048) /mobile_element_type="insertion sequence:IS1" gene complement(1444296..1444691) /gene="insB" /locus_tag="SF1406" /db_xref="GeneID:1024609" CDS complement(1444296..1444691) /gene="insB" /locus_tag="SF1406" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707300.1" /db_xref="GeneID:1024609" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKEKLHVISKRYTQRIERHNLNLRQHLAR LGRMSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1444299..1444688) /gene="insB" /locus_tag="SF1406" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1444718..1444993) /gene="insA" /locus_tag="SF1407" /db_xref="GeneID:1024593" CDS complement(1444718..1444993) /gene="insA" /locus_tag="SF1407" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707301.1" /db_xref="GeneID:1024593" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1444721..1444972) /gene="insA" /locus_tag="SF1407" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(1445022..1445498) /locus_tag="SF1408" /db_xref="GeneID:1024400" CDS complement(1445022..1445498) /locus_tag="SF1408" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707302.1" /db_xref="GeneID:1024400" /translation="MTITDLVLILFIAALLAFAIYDQFIMPRRNGPTLLAIPLLRRGR IDSVIFVGLIVILIYNNVTNHGALITTWLLSALALMGFYIFWIRIPKIIFKQKGFFFA NVWIEYSRIKAMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLVSGNAANLLI" misc_feature complement(1445052..1445492) /locus_tag="SF1408" /note="Uncharacterized membrane protein YobD, UPF0266 family [Function unknown]; Region: YobD; COG4811" /db_xref="CDD:443839" gene complement(1445553..1446413) /gene="manZ" /locus_tag="SF1409" /db_xref="GeneID:1024411" CDS complement(1445553..1446413) /gene="manZ" /locus_tag="SF1409" /codon_start=1 /transl_table=11 /product="PTS system mannose-specific transporter subunit IID" /protein_id="NP_707303.1" /db_xref="GeneID:1024411" /translation="MSEMVDTTQTTTEKKLTQSDIRGVFLRSNLFQGSWNFERMQALG FCFSMVPAIRRLYPENNEARKQAIRRHLEFFNTQPFVAAPILGVTLALEEQRANGAEI DDGAINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLV RLATRYYGVAYGYSKGIDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLV VSTITGQDGQTRVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGI AGYACGLLGL" misc_feature complement(1445559..1446404) /gene="manZ" /locus_tag="SF1409" /note="PTS mannose transporter subunit IID; Region: PRK11103" /db_xref="CDD:182965" gene complement(1446417..1447217) /gene="manY" /locus_tag="SF1410" /db_xref="GeneID:1024603" CDS complement(1446417..1447217) /gene="manY" /locus_tag="SF1410" /codon_start=1 /transl_table=11 /product="PTS system mannose-specific transporter subunit IIC" /protein_id="NP_707304.1" /db_xref="GeneID:1024603" /translation="MEITTLQIVLVFIVACIAGMGSILDEFQFHRPLIACTLVGIVLG DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVIAGHQSIGAGIALAIPL AAAGQVLTIIVRTITVAFQHAADKAADNGNLTAISWIHVSSLFLQAMRVAIPAVIVAL SVGTSEVQNMLNAIPEVVTNGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA FTNFNLVALGVIGTVMAVLYIQLSPKYNRVAGAPAQAAGNNDLDNELD" misc_feature complement(1446429..1447217) /gene="manY" /locus_tag="SF1410" /note="mannose/fructose/sorbose family PTS transporter subunit IIC; Region: PRK15065" /db_xref="CDD:237895" gene complement(1447280..1448251) /gene="manX" /locus_tag="SF1411" /db_xref="GeneID:1024605" CDS complement(1447280..1448251) /gene="manX" /locus_tag="SF1411" /codon_start=1 /transl_table=11 /product="PTS system mannose-specific transporter subunits IIAB" /protein_id="NP_707305.1" /db_xref="GeneID:1024605" /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET LIEKYNAQLAKLDTTKGVLFLVDTWGGSPFNAASRIVVDKEHYEVIAGVNIPMLVETL MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPAAAAPKAAPTPAKPMGPND YMVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTA HVVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERLVEGGVKITSVNVGGMAFRQGKTQ VNNAVSVDEKDIEAFKKLNARGIELEVRKVSTDPKLKMMDLISKIDK" misc_feature complement(1447289..1448251) /gene="manX" /locus_tag="SF1411" /note="PTS system mannose-specific transporter subunits IIAB; Provisional; Region: PRK15088" /db_xref="CDD:185045" gene 1448714..1450264 /gene="yoaE" /locus_tag="SF1412" /db_xref="GeneID:1024610" CDS 1448714..1450264 /gene="yoaE" /locus_tag="SF1412" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707306.1" /db_xref="GeneID:1024610" /translation="MEFLMDPSIWAGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD KARLLGLSLALIMRLGLLSLISWMVTLTKPLFTVMDFSFSGRDLIMLFGGIFLLFKAT TELHERLENRDHDSGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI GFSIIIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQANVQHDADNPMPIPE GAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLGVDEIREQLLSSPHSLFPV CRGELDEIIGIVRAKELLVALEEGVDVAAIASASPAIIVPETLDPINLLGVLRRARGS FVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIITDGNGWLVKGGTDLHALQQA LDVEHLADDDDIATVAGLVISANGHIPRVGDVIDVGPLHITIFEANDYRVDLVRIVKE QPAHDEDE" misc_feature 1448714..1449385 /gene="yoaE" /locus_tag="SF1412" /note="Tellurite resistance membrane protein TerC [Inorganic ion transport and metabolism]; Region: TerC; COG0861" /db_xref="CDD:440622" misc_feature 1449146..1450258 /gene="yoaE" /locus_tag="SF1412" /note="Hemolysin-related protein, contains CBS domains, UPF0053 family [General function prediction only]; Region: TlyC; COG1253" /db_xref="CDD:440865" gene complement(1450268..1451866) /locus_tag="SF1413" /db_xref="GeneID:1024612" CDS complement(1450268..1451866) /locus_tag="SF1413" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707307.2" /db_xref="GeneID:1024612" /translation="MQKAQRIIKTYRRNRMIVCTICALVTLASTLSVRFISQRNLNQQ RVVQFANHAVEELDKVLLPLQAGSKVLLPLIGLPCSVAHLPLRKQAAKLQTVRSIGLV QDGTLYCSSIFGYRNVPVVDILAELPAPQPLLRLTIDRALIKGSPVLIQWTPAAGSSN AGVIEMINIDLLTAMLLEPQLPQISSASLTVDKRHLLYGNGLVDSLPQPEDNENYQVS SQSFPFTINVNGPGATALAWHYLPTQLPLAVLLSLLVGYIAWLATAYRMSFSREINLG LAQHEFELFCQPLLNARSQQCIGVEILLRWNNPRQGWISPDVFIPIAEEHHLIVPLTH YVMAETIRQHHVFPMSSQFHVGINVAPSHFRRGVLIKDLNQYWFSAHPIQQLILEITE RDALLDVDYRIARELHRKNVKLAIDDFGTGNSSFSWLETLRPDVLKIDKSFTAAIGSD AVNSTVTDIIIALGQRLNIELVAEGVETQEQAKYLRRHGVHILQGYLYAQPMPLRDFP KWLAGSQPPPARHNGHITPIMSLR" misc_feature complement(1450301..1451842) /locus_tag="SF1413" /note="Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal transduction mechanisms]; Region: YjcC; COG4943" /db_xref="CDD:443970" gene complement(1451997..1453361) /gene="sdaA" /locus_tag="SF1414" /db_xref="GeneID:1024608" CDS complement(1451997..1453361) /gene="sdaA" /locus_tag="SF1414" /note="Code: E; COG: COG1760" /codon_start=1 /transl_table=11 /product="L-serine deaminase" /protein_id="NP_707308.1" /db_xref="GeneID:1024608" /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDSVTR VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVKERERLLLAQGR HEVDFPRDNGMRFHNGNLPLHENGMQIHAYNGDEVVYSKTYYSIGGGFIVDEEHFGQD AANEVSVPYPFKSATELLAYCNETGYSLSGLAMQNELALHSKKEIDEYFAHVWQTMQA CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSNDPMNVIDWVNMFALAVNEENA AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFMAAGAIGALYKMNASISG AEVGCQGEVGVACSMAAAGLAELLGGSPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC IERNAIASVKAINAARMALRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK VQCD" misc_feature complement(1452000..1453361) /gene="sdaA" /locus_tag="SF1414" /note="L-serine deaminase; Provisional; Region: PRK15023" /db_xref="CDD:184984" gene complement(1453545..1454123) /gene="yeaB" /locus_tag="SF1415" /db_xref="GeneID:1024602" CDS complement(1453545..1454123) /gene="yeaB" /locus_tag="SF1415" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase" /protein_id="NP_707309.1" /db_xref="GeneID:1024602" /translation="MEYRSLTLDDFLSRFQLLRPQINREPLNHRQAAVLIPIVRRPQP GLLLTQRSIHLRKHAGQVAFPGGAVDDTDASVIAAALREAEEEVAIPPSAVEVIGVLP PVDSVTGYQVTPVVGIIPPDLPYRASEDEVSAVFEMPLAQALHLGRYHPLDIYRRGDS HRVWLSWYEQYFVWGMTAGIIRELALQIGVTP" misc_feature complement(1453554..1454123) /gene="yeaB" /locus_tag="SF1415" /note="putative NUDIX hydrolase; Provisional; Region: PRK10707" /db_xref="CDD:182663" gene complement(1454127..1455488) /gene="pabB" /locus_tag="SF1416" /db_xref="GeneID:1024598" CDS complement(1454127..1455488) /gene="pabB" /locus_tag="SF1416" /note="Code: EH; COG: COG0147" /codon_start=1 /transl_table=11 /product="aminodeoxychorismate synthase subunit I" /protein_id="NP_707310.1" /db_xref="GeneID:1024598" /translation="MKTLSPTVITLPWRQDAAEFYFSRLSHLPWAMLLHSGYADHPYS RFDIVVADPICTLTTLGKETVVSESEKRTTTTDDPLQVLQQVLDRADIRPTHNEDLPF QGGALGLFGYDLGRRFESLPEIAEQDIVLPDMAVGIYDWALIVDHQRHTVSLLSHNDV NARRAWLESQQFSPQEDFTLTSDWQSNMTHEQYGEKFRQVQEYLHSGDCYQVNLAQRF HATYSGDEWQAFLQLNQANRAPFSAFLRLEQGAILSLSPERFILCDNSEIQTRPIKGT LPRLPDPQEDSKQAEKLANSAKDRAENLMIVDLMRNDIGRVAVAGSVKVPELFVVEPF PAVHHLVSTITARLPEQLHASDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWCG SIGYLSFCGNMDTSITIRTLTAINGQIYCSAGGGIVADSQEEAEYQETFDKVNKILRQ LEK" misc_feature complement(1454130..1455488) /gene="pabB" /locus_tag="SF1416" /note="aminodeoxychorismate synthase component 1; Region: pabB; PRK15465" /db_xref="CDD:185362" gene 1455562..1455741 /locus_tag="SF1417" /db_xref="GeneID:1024601" CDS 1455562..1455741 /locus_tag="SF1417" /note="Code: S; COG: COG3140" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707311.1" /db_xref="GeneID:1024601" /translation="MFAGLPSLIHEQQQKAVERIQELMAQGMSSGQAIALVAEELRAN HSGELIVARFEDEDE" misc_feature 1455562..1455735 /locus_tag="SF1417" /note="Uncharacterized conserved protein YoaH, UPF0181 family [Function unknown]; Region: yoaH; COG3140" /db_xref="CDD:442374" gene complement(1455861..1456220) /locus_tag="SF1418" /db_xref="GeneID:1024634" CDS complement(1455861..1456220) /locus_tag="SF1418" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707312.1" /db_xref="GeneID:1024634" /translation="MQIKVIYSLIDNMVNFKDKNMPAVIDKALDFIGAMDVSAPTPSS MNESTAKGIFKYLKELGVPASAADITARADQEGWNPGFTEKMVGWAKKMETGERSVIK NPEYFSTYMQEELKALV" misc_feature complement(1455873..1456160) /locus_tag="SF1418" /note="Domain of unknown function (DUF1889); Region: DUF1889; pfam08986" /db_xref="CDD:462649" gene complement(1456576..1456968) /locus_tag="SF1419" /db_xref="GeneID:1024606" CDS complement(1456576..1456968) /locus_tag="SF1419" /note="Code: J; COG: COG0251" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707313.1" /db_xref="GeneID:1024606" /translation="MAVFAARKWKYNEDKMMTIVRIDAEARWSDVVIHNNTLYYTGVP ENLDADAFEQTANTLAQIDAVLEKQGSNKSSILDATIFLADKNDFAAMNKAWDAWVVA GHAPVRCTVQAGLMNPKYKVEIKIVAAV" misc_feature complement(1456582..1456893) /locus_tag="SF1419" /note="This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_2; cd06150" /db_xref="CDD:100007" misc_feature complement(order(1456588..1456590,1456594..1456596, 1456600..1456602,1456630..1456656,1456669..1456671, 1456681..1456683,1456690..1456692,1456723..1456725, 1456729..1456731,1456735..1456740,1456744..1456746, 1456843..1456848,1456852..1456854,1456858..1456860, 1456867..1456869,1456873..1456875,1456882..1456887)) /locus_tag="SF1419" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100007" misc_feature complement(order(1456600..1456602,1456645..1456647, 1456690..1456692,1456702..1456704,1456885..1456887)) /locus_tag="SF1419" /note="putative active site [active]" /db_xref="CDD:100007" gene 1457052..1458962 /locus_tag="SF1420" /db_xref="GeneID:1024645" CDS 1457052..1458962 /locus_tag="SF1420" /note="Code: L; COG: COG1199" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707314.1" /db_xref="GeneID:1024645" /translation="MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVE AGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG RSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE ADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA QSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA AFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSW IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVPRNLPQTNQPGSAR QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD EVQLPDAVITLKQGVGRLIRDADDRGVLVICDYRLVMRPYGATFLASLPPAPRTRDIA RAVRFLAIPSSR" misc_feature 1457067..1458944 /locus_tag="SF1420" /note="Rad3-related DNA helicase DinG [Replication, recombination and repair]; Region: DinG; COG1199" /db_xref="CDD:440812" gene 1459020..1459715 /gene="yeaZ" /locus_tag="SF1421" /db_xref="GeneID:1024594" CDS 1459020..1459715 /gene="yeaZ" /locus_tag="SF1421" /note="Code: O; COG: COG1214" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707315.1" /db_xref="GeneID:1024594" /translation="MRILAIDTATEACSVALWNDGTVNAHFELCPREHTQRILPMVQD ILTTSGTSLTDINALAYGRGPGSFTGVRIGIGIAQGLALGAELPMIGVSTLMTMAQGA WRKNGATRVLSAIDARMGEVYWAEYQRDENGIWHGEETEAVLKPELVHERMQQLSGEW VTVGTGWQAWPDLGKESGLVLRDGEVLLPAAEDMLPIACQMFAEGKTVAVEHAEPVYL RNNVAWKKLPGKE" misc_feature 1459020..1459712 /gene="yeaZ" /locus_tag="SF1421" /note="tRNA A37 threonylcarbamoyladenosine modification protein TsaB [Translation, ribosomal structure and biogenesis]; Region: TsaB; COG1214" /db_xref="CDD:440827" gene 1459755..1460336 /locus_tag="SF1422" /db_xref="GeneID:1024506" CDS 1459755..1460336 /locus_tag="SF1422" /note="Code: M; COG: COG3065" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707316.1" /db_xref="GeneID:1024506" /translation="MAVQKNVIKGILAGTFALMLSGCVTVPDAIKGSSTTPQQDLVRV MSAPQLYVGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPTLGEPSRGRIYADVN GFLDPVDFRGQLVTVVGPITGAVDGKIGNTPYKFMVMQVTGYKRWHLTQQVIMPPQPI DPWFYGGRGWPYGYGGWGWYNPGPARVQTVVTE" misc_feature 1459770..1460321 /locus_tag="SF1422" /note="Outer membrane lipoprotein Slp family; Region: Slp; cl01164" /db_xref="CDD:470102" gene 1460476..1462227 /gene="fadD" /locus_tag="SF1423" /db_xref="GeneID:1024599" CDS 1460476..1462227 /gene="fadD" /locus_tag="SF1423" /note="Code: IQ; COG: COG0318" /codon_start=1 /transl_table=11 /product="long-chain-fatty-acid--CoA ligase" /protein_id="NP_707317.1" /db_xref="GeneID:1024599" /translation="MLTACISFGVAMTTNTHFRGEELKKVWLNRYPADVPTEINPDRY QSLVDMFEQSVARYADQPAFVNMGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALM MPNLLQYPVALFGILRAGIIVVNVNPLYTPRELEHQLNDSGASAIVIVSNFAHTLEKV VDKTAVQHVILTRMGDQLSTAKGTVVNFVVKYIKRLVPKYHLPDAISFRSALHNGYRM QYVKPELVPEDLAFLQYTGGTTGVAKGAMLTHRNMLANLEQVNATYGPLLHPGKELVV TALPLYHIFALTINCLLFIELGGQNLLITNPRDIPGLVKELAKYPFTAITGVNTLFNA LLNNKEFQQLDFSSLHLSAGGGMPVQQVVAERWVKLTGQYLLEGYGLTECAPLVSVNP YDIDYHSGSIGLPVPSTEAKLVDDDDNEVPPGQPGELCVKGPQVMLGYWQRPDATDEI IKNGWLHTGDIAVMDEEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMQHPGVQEVAAV GVPSGSSGEAVKIFVVKKDPSLTEESLVTFCRRQLTGYKVPKLVEFRDELPKSNVGKI LRRELRDEARGKVDNKA" misc_feature 1460542..1462221 /gene="fadD" /locus_tag="SF1423" /note="long-chain-fatty-acid--CoA ligase FadD; Region: PRK08974" /db_xref="CDD:236359" misc_feature order(1461172..1461174,1461181..1461198,1461202..1461207) /gene="fadD" /locus_tag="SF1423" /note="acyl-activating enzyme (AAE) consensus motif; other site" /db_xref="CDD:341259" misc_feature order(1461181..1461183,1461538..1461543,1461604..1461621, 1461853..1461855,1461889..1461891,1461898..1461900, 1461931..1461933,1462168..1462170) /gene="fadD" /locus_tag="SF1423" /note="putative AMP binding site [chemical binding]; other site" /db_xref="CDD:341259" misc_feature order(1461181..1461183,1461310..1461315,1461457..1461459, 1461463..1461468,1461475..1461477,1461538..1461543, 1461604..1461621,1461853..1461855,1461889..1461891, 1461898..1461900,1461922..1461933,1462111..1462113) /gene="fadD" /locus_tag="SF1423" /note="putative active site [active]" /db_xref="CDD:341259" misc_feature order(1461310..1461312,1461463..1461468,1461475..1461477, 1461538..1461540,1461922..1461930,1462093..1462095, 1462111..1462113) /gene="fadD" /locus_tag="SF1423" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:341259" gene 1462309..1463424 /gene="rnd" /locus_tag="SF1424" /db_xref="GeneID:1024596" CDS 1462309..1463424 /gene="rnd" /locus_tag="SF1424" /note="Code: J; COG: COG0349" /codon_start=1 /transl_table=11 /product="ribonuclease D" /protein_id="NP_707318.2" /db_xref="GeneID:1024596" /translation="MITTDDALASLCEAVRVFPAIALDTEFVRTRTYYPQLGLIQLFD GEHLALIDPLGITDWSPLKAILRDPSITKFLHAGSEDLEVFLNVFGELPQPLIDTQIL AAFCGRPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEYAAADVWYLLPITA KLMVETEASGWLPAALDECRLMQMRRQEVVAPEDAWRDITNAWQLRTRQLACLQLLAD WRLRKARERDLAVNFVVREEHLWSVARYMPGSLGELDSLGLSGSEIRFHGKTLLALVE KAQTLPEDALPQPMLNLMDMPGYRKAFKAIKSLITDVSETHKISAELLASRRQINQLL NWHWKLKPQNNLPELISGWRGELMAEALHNLLQEYPQ" misc_feature 1462309..1463415 /gene="rnd" /locus_tag="SF1424" /note="ribonuclease D; Provisional; Region: PRK10829" /db_xref="CDD:236771" gene complement(1463478..1464443) /gene="yeaX" /locus_tag="SF1425" /db_xref="GeneID:1024652" CDS complement(1463478..1464443) /gene="yeaX" /locus_tag="SF1425" /note="Code: C; COG: COG1018" /codon_start=1 /transl_table=11 /product="diogenase subunit beta" /protein_id="NP_707319.1" /db_xref="GeneID:1024652" /translation="MSDYQMFEVQVSQVEPLTEQVKRFTLVATDGKPLPAFTGGSHIL VQMSDGDNQYSNAYSLLSSPHNTSSYQIAVRLEENSRGGSRFLHQQVKVGDRLTISTP NNLFALIPSARKHLFIAGGIGITPFLSHMAELQHSDIDWQLHYCSRNPESCAFRAELV QHPQAEKVHLHHSSTGTRLELARLLADIEPGTHVYTCGPEALIEAVRSEAARLDIAAD TLHFEQFAIEDKTGDAFTLVLARSGKEFVVPEEMTILQVIENNKAAKVECLCREGVCG TCETAILEGEADHRDQYFSDEERASQQSMLICCSRAKGKRLVLDL" misc_feature complement(1463766..1464410) /gene="yeaX" /locus_tag="SF1425" /note="Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur...; Region: PDR_like; cd06185" /db_xref="CDD:99782" misc_feature complement(order(1463769..1463771,1464069..1464071, 1464192..1464197,1464201..1464203,1464219..1464227, 1464267..1464269,1464273..1464278)) /gene="yeaX" /locus_tag="SF1425" /note="FMN-binding pocket [chemical binding]; other site" /db_xref="CDD:99782" misc_feature complement(order(1464267..1464272,1464276..1464278)) /gene="yeaX" /locus_tag="SF1425" /note="flavin binding motif [active]" /db_xref="CDD:99782" misc_feature complement(order(1464162..1464164,1464183..1464185, 1464192..1464194,1464201..1464203)) /gene="yeaX" /locus_tag="SF1425" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99782" misc_feature complement(order(1464066..1464068,1464072..1464083, 1464093..1464095)) /gene="yeaX" /locus_tag="SF1425" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99782" misc_feature complement(order(1463847..1463852,1464000..1464008, 1464075..1464080)) /gene="yeaX" /locus_tag="SF1425" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99782" misc_feature complement(1463481..1463738) /gene="yeaX" /locus_tag="SF1425" /note="Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633" /db_xref="CDD:440398" gene complement(1464499..1465118) /gene="yeaW" /locus_tag="SF1426" /pseudo /db_xref="GeneID:1024625" misc_feature complement(1464499..1465118) /gene="yeaW" /locus_tag="SF1426" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788103 (375 aa). BLAST with identity of 99% in 206 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(1465325..1466066) /locus_tag="SF1427" /pseudogene="unknown" /db_xref="GeneID:1024654" mobile_element 1466327..1467590 /mobile_element_type="insertion sequence:IS600" gene 1466391..1466693 /locus_tag="SF1428" /db_xref="GeneID:1024646" CDS 1466391..1466693 /locus_tag="SF1428" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707321.1" /db_xref="GeneID:1024646" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 1466391..1466663 /locus_tag="SF1428" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1466729..1467547 /locus_tag="SF1429" /db_xref="GeneID:1024661" CDS 1466729..1467547 /locus_tag="SF1429" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707322.1" /db_xref="GeneID:1024661" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <1466729..1467520 /locus_tag="SF1429" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1468458..1469483) /gene="yeaP" /locus_tag="SF1430" /db_xref="GeneID:1024640" CDS complement(1468458..1469483) /gene="yeaP" /locus_tag="SF1430" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707323.2" /db_xref="GeneID:1024640" /translation="MSDQIIARVSQSLAKEQSLESLVRQLLEMLEMVTDMESTYLTKV DVEARLQHIMFARNSQKMHIPENFTVLWDYSLCKRAIDENCFFSDEVPDRWGDCIAAR NLGITTFLSTPIHLPDGSFYGTLCAASSEKRQWSERAEQVLQLFAGLIAQYIQKEALV EQLHEANAALIAQSYTDSLTGLPNRRAIFENLTTLFSLARHLNHKIMIAFIDLDNFKL INDRFGHNSGDLFLIQVGERLNTLQQNGEVIGRLGGDEFLVVSLNNENADISSLRERI QQQIRGEYHLGDVDLYYPGASLGIVEVDPETTDADSALHAADIAMYQEKKHKQKTPFV AHPALHS" misc_feature complement(1468992..1469429) /gene="yeaP" /locus_tag="SF1430" /note="Domain present in phytochromes and cGMP-specific phosphodiesterases; Region: GAF; smart00065" /db_xref="CDD:214500" misc_feature complement(1468497..1468964) /gene="yeaP" /locus_tag="SF1430" /note="Diguanylate cyclase, GGDEF domain; Region: GGDEF; pfam00990" /db_xref="CDD:425976" misc_feature complement(order(1468719..1468721,1468848..1468850)) /gene="yeaP" /locus_tag="SF1430" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature complement(order(1468716..1468727,1468731..1468733, 1468797..1468799,1468809..1468811,1468821..1468826, 1468833..1468835)) /gene="yeaP" /locus_tag="SF1430" /note="active site" /db_xref="CDD:143635" misc_feature complement(order(1468659..1468661,1468743..1468745)) /gene="yeaP" /locus_tag="SF1430" /note="I-site [active]" /db_xref="CDD:143635" gene 1469666..1469920 /gene="yoaF" /locus_tag="SF1431" /db_xref="GeneID:1027799" CDS 1469666..1469920 /gene="yoaF" /locus_tag="SF1431" /note="Code: S; COG: COG3042" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707324.1" /db_xref="GeneID:1027799" /translation="MKIISFVLPCLLVLAGCSTPSQPEAPKPPQIGMANPASVYCQQK GGTLIPVQTAQGVSNNCKLPGGETIDEWALWRRDHPAGEK" misc_feature 1469666..1469905 /gene="yoaF" /locus_tag="SF1431" /note="Putative hemolysin [General function prediction only]; Region: Hlx; COG3042" /db_xref="CDD:442276" gene complement(1469942..1470310) /gene="yeaO" /locus_tag="SF1432" /db_xref="GeneID:1024649" CDS complement(1469942..1470310) /gene="yeaO" /locus_tag="SF1432" /note="Code: S; COG: COG3189" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707325.1" /db_xref="GeneID:1024649" /translation="MKGRTNTMNIQCKRVYDPAEQSDGYRVLVDRLWPRGIKKTDLAL DEWDKEITPSTELRKAFHGEVVDFATFREQYRAELAQHEQEGKRLADIAKKQPLTLLY AAKNTTQNHALVLADWLRSL" misc_feature complement(1469945..1470289) /gene="yeaO" /locus_tag="SF1432" /note="Uncharacterized conserved protein YeaO, DUF488 family [Function unknown]; Region: YeaO; COG3189" /db_xref="CDD:442422" gene complement(1470463..1471524) /gene="yeaN" /locus_tag="SF1433" /db_xref="GeneID:1024671" CDS complement(1470463..1471524) /gene="yeaN" /locus_tag="SF1433" /note="Code: P; COG: COG2807" /codon_start=1 /transl_table=11 /product="amino acid/amine transport protein" /protein_id="NP_707326.1" /db_xref="GeneID:1024671" /translation="MTCSTSLSGKNRIVLIAGILMIATTLRVTFTGAAPLLDTIRSAY SLTTAQTGLLTTLPLLAFALISPLAAPVARRFGMERSLFAALLLICAGIAIRSLPSPY LLFGGTAVIGGGIALGNVLLPGLIKRDFPHSVARLTGAYSLTMGAAAALGSAMVVPLA LNGFGWQGALFMLMCFPLLALFLWLPQWRSQQHANLSTSRALHTRGIWRSPLAWQVTL FLGINSLVYYVIIGWLPAILISHGYSEAQAGSLHGLLQLATAAPGLLIALFLHHVKDQ RGIAAFVALMCAVGAVGLCFMPAHAITWTLLFGFGSGATMILGLTFIGLRQVLRIRRR HSRGWHNPSGICWQPVGRR" misc_feature complement(1470547..1471479) /gene="yeaN" /locus_tag="SF1433" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature complement(order(1470565..1470567,1470577..1470579, 1470589..1470594,1470736..1470738,1470748..1470750, 1470829..1470831,1470838..1470846,1470853..1470858, 1470865..1470867,1471078..1471080,1471087..1471092, 1471099..1471101,1471156..1471158,1471165..1471173, 1471177..1471182,1471327..1471329,1471423..1471425, 1471432..1471437,1471444..1471449)) /gene="yeaN" /locus_tag="SF1433" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:349949" gene 1471621..1472439 /gene="yeaM" /locus_tag="SF1434" /pseudo /db_xref="GeneID:1024621" misc_feature 1471621..1472439 /gene="yeaM" /locus_tag="SF1434" /note="Similar to Escherichia coli K12 ARAC-type regulatory protein gi: 1788091 (274 aa). BLAST with identity of 98% in 273 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(1472396..1472842) /gene="yeaL" /locus_tag="SF1435" /db_xref="GeneID:1023392" CDS complement(1472396..1472842) /gene="yeaL" /locus_tag="SF1435" /note="Code: S; COG: COG2707" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707327.1" /db_xref="GeneID:1023392" /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLSTFFP WIEKQGLSIGIIILTIGVMAPIASGTLPPSTLIHSFLNWKSLVAIAVGVIVSWLGGRG VTLMGSQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ" misc_feature complement(1472402..1472794) /gene="yeaL" /locus_tag="SF1435" /note="Uncharacterized membrane protein, DUF441 family [Function unknown]; Region: YeaL; COG2707" /db_xref="CDD:442026" gene 1472964..1473116 /locus_tag="SF1436" /db_xref="GeneID:1026370" CDS 1472964..1473116 /locus_tag="SF1436" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707328.1" /db_xref="GeneID:1026370" /translation="MHANNNVKTAISRGHAMNDQMFVETLIITSSFFAIAVVLVLSVL LIERIG" misc_feature 1473012..1473113 /locus_tag="SF1436" /note="small membrane protein YoaI; Region: membrane_YoaI; NF041475" /db_xref="CDD:469363" gene complement(1473117..1473620) /gene="yeaK" /locus_tag="SF1437" /db_xref="GeneID:1024644" CDS complement(1473117..1473620) /gene="yeaK" /locus_tag="SF1437" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707329.1" /db_xref="GeneID:1024644" /translation="MTEMAKGSVTHQQLIALLSQEGANFRVVTHEAVGKCEAVSEIRG TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHIGGLRASLASPAEVDEL TGCVFGAIPPFSFHPKLKLVADPLLFERFDEIAFNAGMLDKSVILKTADYLRIAQPEL VNFRRTA" misc_feature complement(1473129..1473590) /gene="yeaK" /locus_tag="SF1437" /note="YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting...; Region: YeaK; cd04336" /db_xref="CDD:239828" misc_feature complement(order(1473210..1473212,1473294..1473299, 1473465..1473467)) /gene="yeaK" /locus_tag="SF1437" /note="putative deacylase active site [active]" /db_xref="CDD:239828" gene complement(1473663..1474740) /gene="yeaJ" /locus_tag="SF1438" /pseudo /db_xref="GeneID:1024642" misc_feature complement(1473663..1474740) /gene="yeaJ" /locus_tag="SF1438" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788086 (557 aa). BLAST with identity of 99% in 359 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element 1474741..1476004 /mobile_element_type="insertion sequence:IS600" gene 1474805..1475107 /locus_tag="SF1439" /db_xref="GeneID:1024627" CDS 1474805..1475107 /locus_tag="SF1439" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707330.1" /db_xref="GeneID:1024627" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATVYFAQESLKNTR" misc_feature 1474805..1475077 /locus_tag="SF1439" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1475143..1475961 /locus_tag="SF1440" /db_xref="GeneID:1024631" CDS 1475143..1475961 /locus_tag="SF1440" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707331.1" /db_xref="GeneID:1024631" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHYSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <1475143..1475934 /locus_tag="SF1440" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 1476368..1477114 /gene="yeaF" /locus_tag="SF1441" /db_xref="GeneID:1024630" CDS 1476368..1477114 /gene="yeaF" /locus_tag="SF1441" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707332.1" /db_xref="GeneID:1024630" /translation="MTKLKLLALGVLIATSAGVAHAEGKFSLGAGVGVVEHPYKDYDT DVYPVPVINYEGDNFWFRGLGGGYYLWNDATDKLSITAYWSPLYFKAKDSGDHQMRHL DDRKSTMMAGLSYAHFTQYGYLRTTLAGDTLDNSNGIVWDMAWLYRYTNGGLTVTPGI GVQWNSENQNEYYYGVSRKESARSGLRGYNPNDSWSPYLELSASYNFLGDWSVYGTAR YTRLSDEVTDSPMVDKSWTGLISTGITYKF" misc_feature 1476377..1477111 /gene="yeaF" /locus_tag="SF1441" /note="Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family [Cell wall/membrane/envelope biogenesis]; Region: OmpV; COG3713" /db_xref="CDD:442927" gene 1477204..1477965 /locus_tag="SF1442" /db_xref="GeneID:1024643" CDS 1477204..1477965 /locus_tag="SF1442" /note="Code: R; COG: COG0656" /codon_start=1 /transl_table=11 /product="aldehyde reductase" /protein_id="NP_707333.1" /db_xref="GeneID:1024643" /translation="MQQKMIQFSGDVSLPAIGQGTWYMGEDASQRKTEVAALRAGIEL GLTLIDTAEMYADGGAEKVVGEALTGLREKVFLVSKVYPWNAGGQKAINACEASLRRL NTDYLDLYLLHWSGSFAFEETVAAMEKLIAQGKIRRWGVSNLGYADMQELWQLPGGNQ CATNQVLYHLGSRGIEYDLLPWCQQQQMPVMAYSPLAQAGRLRNGLLKNAVVNEIAHV QQHAAALEVELSSAELAMLDKAYPVPKGKTALDMV" misc_feature 1477213..1477917 /locus_tag="SF1442" /note="Escherichia coli YeaE and similar proteins; Region: AKR_YeaE; cd19138" /db_xref="CDD:381364" misc_feature order(1477351..1477353,1477366..1477368,1477441..1477443, 1477540..1477542) /locus_tag="SF1442" /note="catalytic tetrad [active]" /db_xref="CDD:381364" gene complement(1478016..1478900) /gene="yeaD" /locus_tag="SF1443" /db_xref="GeneID:1024655" CDS complement(1478016..1478900) /gene="yeaD" /locus_tag="SF1443" /note="Code: G; COG: COG0676" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707334.2" /db_xref="GeneID:1024655" /translation="MIKKIFALPVIEQISPVLSRRKLDELDLIVVDHPQVKASFALQG AHLLSWKPAGEEEVLWLSNNTPFKNGVAIRGGVPVCWPWFGPAAQQGLPAHGFARNLP WTLKSHHEDADGVALTFELTQSEETKKFWPHDFTLLAHFRVGKTCEIDLESHGEFETT SALHTYFNVGDIAKVSVSGLGDRFIDKVNDAKEDVLTDGIQTFPDRTDRVYLNPQDCS VINDEALNRIIAVGHQHHLNVVGWNPGPALSVSMGDMPDDGYKTFVCVETAYASETQK VTKEKPAHLAQSIRVAKR" misc_feature complement(1478022..1478900) /gene="yeaD" /locus_tag="SF1443" /note="D-hexose-6-phosphate mutarotase [Carbohydrate transport and metabolism]; Region: YeaD; COG0676" /db_xref="CDD:440440" gene complement(1478984..1479979) /gene="gapA" /locus_tag="SF1444" /db_xref="GeneID:1024650" CDS complement(1478984..1479979) /gene="gapA" /locus_tag="SF1444" /note="Code: G; COG: COG0057" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase" /protein_id="NP_707335.2" /db_xref="GeneID:1024650" /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYM LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGLFLT DETARKHITAGAKKVVMTGPSKDNTPMFVKGANFDKYAGQDIVSNASCTTNCLAPLAK VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK" misc_feature complement(1478987..1479979) /gene="gapA" /locus_tag="SF1444" /note="glyceraldehyde-3-phosphate dehydrogenase; Region: gapA; PRK15425" /db_xref="CDD:185323" gene 1480321..1480734 /gene="yeaA" /locus_tag="SF1445" /db_xref="GeneID:1024628" CDS 1480321..1480734 /gene="yeaA" /locus_tag="SF1445" /note="Code: O; COG: COG0229" /codon_start=1 /transl_table=11 /product="methionine sulfoxide reductase B" /protein_id="NP_707336.1" /db_xref="GeneID:1024628" /translation="MANKPSAEELKKNLSEMQFYVTQNHGTEPPFTGRLLHNKRDGVY HCLICDAPLFHSETKYDSGCGWPSFYEPVSEESIRYIKDLSHGMQRIEIRCGNCDAHL GHVFPDGPQPTGERYCVNSASLRFTDGENGEEING" misc_feature 1480330..1480731 /gene="yeaA" /locus_tag="SF1445" /note="methionine-R-sulfoxide reductase; Region: TIGR00357" /db_xref="CDD:129454" gene 1480776..1481048 /locus_tag="SF1446" /db_xref="GeneID:1024620" CDS 1480776..1481048 /locus_tag="SF1446" /note="Code: S; COG: COG3139" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707337.2" /db_xref="GeneID:1024620" /translation="MNLDDIINSMTPEVYQRLSTAVELGKWPDGVALTEEQKENCLQL VMLWQARHNTEAQHMTIDTNGQMVMKSKQQLKEDFGISAKPIAMFK" misc_feature 1480776..1481045 /locus_tag="SF1446" /note="Uncharacterized conserved protein YeaC, DUF1315 family [Function unknown]; Region: yeaC; COG3139" /db_xref="CDD:442373" gene 1481418..1482494 /locus_tag="SF1447" /db_xref="GeneID:1024665" CDS 1481418..1482494 /locus_tag="SF1447" /note="Code: ER; COG: COG1063" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_707338.1" /db_xref="GeneID:1024665" /translation="MKALARFGKAFGGYKMIHVPQPICGPEDVVTEIKAAAICGADMK HYNVDSGSDEFNSIRGHEFAGCIAQVGEKVKDWKVGQRVVSDNSGHVCGVCPACEQGD FLCCTEKVNLGLDNNTWGGGFSKYCLVPGEILKIHRHALWEIPDGVDYEDAAVLDPIC NAYKSIAQQSKFLPGQDVVVIGTGPLGLFSVQMARIMGAVNIVVVGLQEDVAVRFPVA KELGATAVVNGSTEDVVARCQQICGKDNLGLVIECSGANIALKQAIEMLRPNGEVVRV GMGFKPLDFSINDITAWNKSIIGHMAYDSTSWRNAIRLLASGAIKVKPMITHRIGLSQ WREGFDAMVDKTAIKVIMTYDFDE" misc_feature 1481418..1482371 /locus_tag="SF1447" /note="Alcohol dehydrogenases of the MDR family; Region: Zn_ADH4; cd08258" /db_xref="CDD:176219" misc_feature order(1481532..1481540,1481547..1481549,1481886..1481888, 1481898..1481900,1481961..1481978,1482033..1482038, 1482057..1482059,1482126..1482128,1482174..1482179, 1482183..1482185,1482243..1482248,1482315..1482323) /locus_tag="SF1447" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176219" misc_feature order(1481532..1481534,1481598..1481603,1481886..1481888) /locus_tag="SF1447" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176219" misc_feature order(1481691..1481693,1481700..1481702,1481709..1481711, 1481733..1481735) /locus_tag="SF1447" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176219" gene 1482521..1483900 /locus_tag="SF1448" /db_xref="GeneID:1024629" CDS 1482521..1483900 /locus_tag="SF1448" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707339.2" /db_xref="GeneID:1024629" /translation="MEQITKPHCGARLDRLPDCRWHSSMFAIVAFGLLVCWSNAVGGL ILAQLKALGWTDNSTTATFSAITTAGMFLGALVGGIIGDKTGRRNAFILYEAIHIASM VVGAFSPNMDFLIACRFVMDVGLGALLVTLFAGFTEYMPGRNRGTWSSRVSFIGNWSY PLCSLIAMGLTPLISAEWNWRVQLLIPAILSLIATALAWRYFPESPRWLESRGRYQEA EKVMRSIEEGVIRQTGKPLPPVVIADDGKAPQAVPYSALLTGVLLKRVILGSCVLITM NVVQYTLINWLPTIFMTQGINLKDSIVLNTMSMFGAPFGIFIAMLVMDKIPRKTMGVG LLILIAVLGYIYSLQTSMLLITLIGFFLITFVYMYVCYASAVYVPEIWPTEAKLRGSG LANAVGRISGIAAPYAVAVLLSSYGVTGVFILLGAVSNIVAIAIATIGIETKGVSVES LSIDAVANK" misc_feature 1482593..1483831 /locus_tag="SF1448" /note="Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily; Region: MFS_SV2_like; cd17316" /db_xref="CDD:340874" misc_feature order(1482623..1482628,1482635..1482640,1482647..1482649, 1482743..1482745,1482893..1482898,1482902..1482910, 1482917..1482919,1482977..1482979,1482986..1482991, 1482998..1483000,1483337..1483339,1483346..1483351, 1483358..1483366,1483373..1483375,1483454..1483456, 1483466..1483468,1483616..1483621,1483631..1483633, 1483643..1483645,1483691..1483693,1483700..1483705, 1483712..1483717,1483724..1483726) /locus_tag="SF1448" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340874" gene 1483917..1484962 /gene="ydjJ" /locus_tag="SF1449" /pseudo /db_xref="GeneID:1024666" misc_feature 1483917..1484962 /gene="ydjJ" /locus_tag="SF1449" /note="Similar to Escherichia coli K12 oxidoreductase gi: 1788073 (348 aa). BLAST with identity of 99% in 349 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1484983..1485819 /locus_tag="SF1450" /db_xref="GeneID:1024622" CDS 1484983..1485819 /locus_tag="SF1450" /note="Code: G; COG: COG0191" /codon_start=1 /transl_table=11 /product="aldolase" /protein_id="NP_707340.1" /db_xref="GeneID:1024622" /translation="MLADIRYWENDATNKYYAIAHFNVWNAEMLMGVKDAAEEAKSPV IISFSTGFVGNTSFEDFSHMMVSMAQKATVPVITHWDHGRSIEIIHNAWTHGMNSLMR DASAFDFEENIRLTKEAVDFFHPLGIPVEAELGHVGNETVYEEALAGYHYTDPDQAAE FVERTGCDSLAVAIGNQHGVYTSEPQLNFEVVKRVRDAVSVPLVLHGASGISDADIKT AISLGIAKINIHTELCQAAMVAVKENQDQPFLHLEREVRKAVKERALEKIELFGSDGK AE" misc_feature 1484983..1485813 /locus_tag="SF1450" /note="A large family of domains similar to triose phosphate isomerase (TIM) which, in general, share an eight beta/alpha closed barrel structure; Region: TIM-like beta/alpha barrel domains; cl21457" /db_xref="CDD:473867" misc_feature order(1485058..1485066,1485073..1485075,1485133..1485135, 1485142..1485150,1485160..1485162,1485172..1485174, 1485181..1485186,1485412..1485414,1485673..1485678, 1485682..1485687,1485694..1485696,1485706..1485708) /locus_tag="SF1450" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238477" misc_feature order(1485223..1485228,1485511..1485519,1485523..1485525, 1485598..1485603,1485607..1485609,1485664..1485666, 1485670..1485675) /locus_tag="SF1450" /note="active site" /db_xref="CDD:238477" misc_feature order(1485226..1485228,1485514..1485516,1485598..1485600) /locus_tag="SF1450" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:238477" misc_feature order(1485511..1485513,1485517..1485519,1485523..1485525, 1485601..1485603,1485607..1485609) /locus_tag="SF1450" /note="Na+ binding site [ion binding]; other site" /db_xref="CDD:238477" gene 1485824..1486771 /locus_tag="SF1451" /db_xref="GeneID:1024624" CDS 1485824..1486771 /locus_tag="SF1451" /note="Code: G; COG: COG0524" /codon_start=1 /transl_table=11 /product="kinase" /protein_id="NP_707341.2" /db_xref="GeneID:1024624" /translation="MDNLDVICIGAAIVDIPLQPVSKNIFDVDSYPLERIAMSTGGDA INEATIISRLGHRTALMSRIGKDASGQFILDHCRKENIDIQSLKQDVSIDTSINVGLV TEDGERTFVTNRNGSLWKLNIDDVDFARFPQAKLLSLASIFNSPLLDGKALTEIFTQA KARQMIICADMIKPRLNETLDDICEALSYVDYLFPNFAEEKLLTGKETLDEIADCFLA CGVKTVVIKTGKDGCFIKRGDMTMKVPAVAGITAIDTIGAGDNFASGFIAALLEGKNL RECARFANATAAISVLSVGATTGVKNRKLVEQLLEEYEG" misc_feature 1485836..1486714 /locus_tag="SF1451" /note="2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166" /db_xref="CDD:238571" misc_feature order(1485947..1485952,1485959..1485961,1486115..1486117, 1486157..1486159,1486163..1486165,1486247..1486249, 1486340..1486342,1486592..1486594,1486601..1486603, 1486709..1486711) /locus_tag="SF1451" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238571" misc_feature order(1486502..1486504,1486517..1486519,1486562..1486564, 1486592..1486600,1486607..1486609,1486673..1486675, 1486685..1486687) /locus_tag="SF1451" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238571" gene 1486826..1487761 /locus_tag="SF1452" /db_xref="GeneID:1024623" CDS 1486826..1487761 /locus_tag="SF1452" /note="Code: C; COG: COG0667" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707342.2" /db_xref="GeneID:1024623" /translation="MGLGTWAIGGGPAWNGDLDRQICIDTILEAHRCGINLIDTALGY NFGNSEVIVGQALKKLPREQVVVETKCGIVWERKGSLFNKVGDRQLYKNLSPESIREE VEASLQRLGIDYIDIYMTHWQSVPPFFTPIAETVAVLNELKAEGKIRAIGAANVDADH IREYLQYGELDIIQAKYSILDRAMENELLPLCRDNGIVVQVYSPLEQGLLTGTITRDY VPGGARANKVWFQRENMLKVIDMLEQWQPLCARYQCTIPTLALAWILKQSDLISILSG ATAPEQVRENVAALNINLSDADATLMREMAEALER" misc_feature 1486826..1487737 /locus_tag="SF1452" /note="Escherichia coli NADH-specific methylglyoxal reductase (YdjG) and similar proteins; Region: AKR_AKR11B2; cd19149" /db_xref="CDD:381375" misc_feature order(1486835..1486843,1486940..1486942,1486955..1486957, 1487033..1487035,1487285..1487290,1487345..1487347, 1487429..1487449,1487456..1487458,1487462..1487464, 1487495..1487497,1487594..1487596,1487645..1487653, 1487657..1487659,1487669..1487671) /locus_tag="SF1452" /note="putative active site [active]" /db_xref="CDD:381375" misc_feature order(1486940..1486942,1486955..1486957,1487033..1487035, 1487186..1487188) /locus_tag="SF1452" /note="catalytic tetrad [active]" /db_xref="CDD:381375" gene 1487898..1488656 /locus_tag="SF1453" /db_xref="GeneID:1024683" CDS 1487898..1488656 /locus_tag="SF1453" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_707343.1" /db_xref="GeneID:1024683" /translation="MAAKDRIQAIKQMVANDKKVTVSNLSGIFQVTEETIRRDLEKLE DEGFLTRTYGGAVLNTAVLTENIHFYKRASSFYEEKLLIARKALPFIDNKTTMAADSS STVMELLKLLQDRSDLTLLTNSAEAIHVLAQSEIKVVSTGGELNKNTLSLQGRITKEI ISRYHVDIMVMSCKGLDINSGALDSNEAEAEIKKTMIRQATEVALLVDHSKFDRKAFV QLADFSHINYIITDKSPGAEWIAFCKDNNIQLVW" misc_feature 1487898..1488650 /locus_tag="SF1453" /note="DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:440960" gene 1488774..1490132 /gene="ydjE" /locus_tag="SF1454" /db_xref="GeneID:1024656" CDS 1488774..1490132 /gene="ydjE" /locus_tag="SF1454" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707344.2" /db_xref="GeneID:1024656" /translation="MEQYDQIGARLDRLPLARFHYRIFGIISFSLLLTGFLSYSGNVV LAKLVSNGWSNNFLYAAFTSALMFGYFIGSLTGGFIGDYFGRRRAFRINLLIVGIAAT GAAFVPDMYWLIFFRFLMGTGMGALIMVGYASFTEFIPATVRGKWSARLSFVGNWSPM LSAAIGVVVIAFFSWRIMFLLGGIGILLAWFLSGKYFIESPRWLEGKGQIAGAESQLR EVEQQIEREKSIRLPQLTLNQSNSKVKVIKGTFRLLFKGEMLRRTLVAITVLIAMNIS LYTITVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRRLFGSALLI IIAVLGYIYSSQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVN AVGRIVAVFTPYGVAALLTHYGSITVFMVLGVMLVLCALVLSIFGIETRKVSLEEISE VN" misc_feature 1488843..1490078 /gene="ydjE" /locus_tag="SF1454" /note="Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily; Region: MFS_SV2_like; cd17316" /db_xref="CDD:340874" misc_feature order(1488873..1488878,1488885..1488890,1488897..1488899, 1488993..1488995,1489143..1489148,1489152..1489160, 1489167..1489169,1489227..1489229,1489236..1489241, 1489248..1489250,1489581..1489583,1489590..1489595, 1489602..1489610,1489617..1489619,1489698..1489700, 1489710..1489712,1489860..1489865,1489875..1489877, 1489887..1489889,1489935..1489937,1489944..1489949, 1489956..1489961,1489968..1489970) /gene="ydjE" /locus_tag="SF1454" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340874" gene complement(1490225..1490884) /gene="ydjB" /locus_tag="SF1455" /db_xref="GeneID:1024674" CDS complement(1490225..1490884) /gene="ydjB" /locus_tag="SF1455" /note="Code: Q; COG: COG1335" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707345.3" /db_xref="GeneID:1024674" /translation="MIKETAMPHRALLLVDLQNDFCAGGALAVPEGDSTVEVANRLID WCQSRGEAVIASQDWHPANHGSFASQHGVEPYTPGQLGGLRQTFWPEHCVQNSEGAQL HPLLNQKEIAAVFHKGENPLVDSYSAFFDNGRRQKTALDDWLRDHEIDELIVMGLATD YCVKFTVLDALQLGYKVNVITDGCRGVNIQPQDSAHAFMEMSAAGATLYTLADWEETQ G" misc_feature complement(1490228..1490860) /gene="ydjB" /locus_tag="SF1455" /note="bifunctional nicotinamidase/pyrazinamidase; Region: PRK11609" /db_xref="CDD:183228" misc_feature complement(order(1490399..1490401,1490534..1490536, 1490837..1490839)) /gene="ydjB" /locus_tag="SF1455" /note="catalytic triad [active]" /db_xref="CDD:238493" misc_feature complement(order(1490609..1490611,1490705..1490707, 1490711..1490713)) /gene="ydjB" /locus_tag="SF1455" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238493" misc_feature complement(1490411..1490416) /gene="ydjB" /locus_tag="SF1455" /note="conserved cis-peptide bond [active]" /db_xref="CDD:238493" gene complement(1490877..1491893) /gene="ansA" /locus_tag="SF1456" /db_xref="GeneID:1024663" CDS complement(1490877..1491893) /gene="ansA" /locus_tag="SF1456" /note="Code: EJ; COG: COG0252" /codon_start=1 /transl_table=11 /product="cytoplasmic asparaginase I" /protein_id="NP_707346.1" /db_xref="GeneID:1024663" /translation="MQKKSIYVAYTGGTIGMQRSEQGYIPVSGHLQRQLALMPEFHRP EMPDFTIHEYTPLMDSSDMTPEDWQHIAEDIKAHYDDYDGFVILHGTDTMAYTASALS FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAPNYPINEVTLFFNNRLYRGNR TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPHGEGELIVHPITPQPIGVVTIY PGISADVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELQEASDRGIVVVNLTQCMSG KVNMSGYATGNALAHAGVIDGADMTVEATLTKLHYLLSQELDTETIRKAMSQNLRGEL TPDD" misc_feature complement(1490889..1491893) /gene="ansA" /locus_tag="SF1456" /note="cytoplasmic asparaginase I; Provisional; Region: ansA; PRK09461" /db_xref="CDD:181876" misc_feature complement(order(1491405..1491407,1491543..1491545, 1491618..1491626,1491711..1491716,1491852..1491857)) /gene="ansA" /locus_tag="SF1456" /note="active site" /db_xref="CDD:199207" misc_feature complement(order(1490964..1490966,1490976..1490978, 1490988..1490990,1491045..1491047,1491057..1491071, 1491078..1491080,1491150..1491152,1491162..1491170, 1491174..1491176,1491201..1491206,1491213..1491215, 1491222..1491227,1491231..1491260,1491264..1491266, 1491390..1491407,1491537..1491542,1491606..1491608, 1491615..1491620,1491690..1491695,1491699..1491719, 1491726..1491728,1491819..1491827,1491852..1491854)) /gene="ansA" /locus_tag="SF1456" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:199207" gene complement(1492060..1493916) /gene="sppA" /locus_tag="SF1457" /db_xref="GeneID:1024676" CDS complement(1492060..1493916) /gene="sppA" /locus_tag="SF1457" /note="Code: NO; COG: COG0616" /codon_start=1 /transl_table=11 /product="protease 4" /protein_id="NP_707347.2" /db_xref="GeneID:1024676" /translation="MRTLWRFIAGFFKWTWRLLNFVREMVLNLFFIFLVLVGVGIWMQ VSGGDSKETASRGALLLDISGVIVDKPDSSQRFSKLSRQLLGASSDRLQENSLFDIVN TIRQAKDDRNITGIVMDLKNFAGGDQPSMQYIGKALKEFRDSGKPVYAVGENYSQGQY YLASFANKIWLSPQGVVDLHGFATNGLYYKSLLDKLKVSTHVFRVGTYKSAVEPFIRD DMSPAAREADSRWIGELWQNYLNTVAANRQIPAQQVFPGAQGLLEGLTKTGGDTAKYA LENKLVDALASSAEIEKALTKEFGWSKTDKNYRAISYYDYALKTPADTGDSIGVVFAN GAIMDGEETQGNVGGDTTAAQIRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAA RAAGKSVVVSMGGMAASGGYWISTPANYIVANPSTLTGSIGIFGVITTVENSLDSIGV HTDGVSTSPLADVSITRALPPEAQQMMQLSIENGYKRFITLVADARHSTPEQIDKIAQ GHVWTGQDAKANGLVDSLGDFDDAVAKAAELAKVKQWHLEYYVDEPTFFDKVMDNMSG SVRAMLPDAFQAMLPAPLASVASTVKSESDKLAAFNDPQNRYAFCLTCANVR" misc_feature complement(1492063..1493916) /gene="sppA" /locus_tag="SF1457" /note="signal peptide peptidase SppA; Region: PRK10949" /db_xref="CDD:182860" gene 1494095..1494628 /gene="ydjA" /locus_tag="SF1458" /db_xref="GeneID:1024667" CDS 1494095..1494628 /gene="ydjA" /locus_tag="SF1458" /note="Code: C; COG: COG0778" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_707348.1" /db_xref="GeneID:1024667" /translation="MINRRSASRLAEPAPTGEQLQNILRAGMRAPDHKSMQPWHFFVI EGEGCERFSAVLEQGAIAAGSDDKAIDKARNAPFRAPLIITVVAKCKENHKVPRWEQE MSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCREQDKIVGFLYLGTPQLK ASTSINVPDPTPFVTYF" misc_feature 1494095..1494625 /gene="ydjA" /locus_tag="SF1458" /note="putative oxidoreductase; Provisional; Region: PRK10828" /db_xref="CDD:182761" misc_feature order(1494104..1494106,1494155..1494160,1494164..1494172, 1494176..1494187,1494191..1494193,1494203..1494205, 1494209..1494226,1494389..1494394,1494398..1494403, 1494410..1494415,1494422..1494427,1494434..1494439, 1494446..1494451,1494467..1494469,1494473..1494475, 1494509..1494514,1494533..1494535,1494539..1494541) /gene="ydjA" /locus_tag="SF1458" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:380312" misc_feature order(1494104..1494112,1494179..1494181,1494185..1494193, 1494392..1494394,1494401..1494406,1494464..1494478) /gene="ydjA" /locus_tag="SF1458" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:380312" gene 1494745..1495788 /gene="selD" /locus_tag="SF1459" /db_xref="GeneID:1027483" CDS 1494745..1495788 /gene="selD" /locus_tag="SF1459" /note="Code: E; COG: COG0709" /codon_start=1 /transl_table=11 /product="selenophosphate synthetase" /protein_id="NP_707349.2" /db_xref="GeneID:1027483" /translation="MSENSIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV GNETRDDAAVYDLGNGTSVISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA IAILGWPINKLSPEIAREVTEGGRYACRQAGIALAGGHSIDAPEPIFGLAVTGIVPTE RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNIAGASFAN IEGVKAMTDVTGFGLLGHLSEMCQGAGVQARVDYEAIPKLPGVEEYIKLGAVPGGTER NFASYGHLMGEMPREVRDLLCDPQTSGGLLLAVMPEAENEVKTTAAEFGIELTAIGEL VPARGGRAMVEIR" misc_feature 1494745..1495785 /gene="selD" /locus_tag="SF1459" /note="selenide, water dikinase SelD; Region: PRK00943" /db_xref="CDD:234870" gene 1495793..1497754 /gene="topB" /locus_tag="SF1460" /db_xref="GeneID:1024660" CDS 1495793..1497754 /gene="topB" /locus_tag="SF1460" /note="Code: L; COG: COG0550" /codon_start=1 /transl_table=11 /product="DNA topoisomerase III" /protein_id="NP_707350.2" /db_xref="GeneID:1024660" /translation="MRLFIAEKPSLARAIADVLPKPHRKGDGFIECGNGQVVTWCIGH LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHEASEIVHAG DPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLNPQAVERAIDRLRSNSEFVPLCV SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRISGQPAIV TSYNDKRESESAPLPFSLSALQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR YLPEEHFAGRHAVMNAISVHAPDLLPQPVVDPDIRNRCWDDKKVDAHHAIIPTARSSA INLTENEAKVYNLIARQYLMQFCPDAVFRKCVIELDIAKGKFVAKARFLAEAGWRTLL GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ DKDLKKVLRATDGLGTEATRAGIIELLFKRGFLTKKGRYIHSTDAGKALFHSLPEMAT RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIDQAKRTPVRQFRGIVAPGSGG SADKKKAAPRKRSAKKSPPADEAGSGAIA" misc_feature 1495793..1497718 /gene="topB" /locus_tag="SF1460" /note="DNA topoisomerase 3; Region: PRK07726" /db_xref="CDD:236078" gene 1497770..1498921 /gene="ynjI" /locus_tag="SF1461" /db_xref="GeneID:1024705" CDS 1497770..1498921 /gene="ynjI" /locus_tag="SF1461" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707351.1" /db_xref="GeneID:1024705" /translation="MLFESYSEISSGSRKFVGYFFAWIKLSPLKYVITGNVMKKVLLQ NHPGSEKYSFNGWGIFNSNFERVIKENKAMLLCKWGFYLTCVVAVMFVFAAITSNGLN ERGLITAGCSFLYLLIMMGLIVRAGFKAKKEQLHYYQAKGIEPLSIEKLQALQLIAPY RFYHKQWSETLEFWPRKPEPGKDTFQYHVLPFDSIDIISKRRESLENQWGIEDSESYC ALMEHFLSGDHGANTFKANMEEAPEQVIALLNKFAVFPSDYISDCANNRSGKSSAKLI WAAELSWMISISSTAFQNGTIEEELAWHYIMLASRKAHELFESEEDYQKNSLMGFLYW HICCYRRKLTDAELEACYRYDKQFWEHYSKKCRWPIRNVPWGASSVKYS" misc_feature 1497881..1498918 /gene="ynjI" /locus_tag="SF1461" /note="hypothetical protein; Provisional; Region: PRK11380" /db_xref="CDD:236903" gene complement(1499038..1500204) /gene="gdhA" /locus_tag="SF1462" /db_xref="GeneID:1024664" CDS complement(1499038..1500204) /gene="gdhA" /locus_tag="SF1462" /note="Code: E; COG: COG0334" /codon_start=1 /transl_table=11 /product="glutamate dehydrogenase" /protein_id="NP_707352.1" /db_xref="GeneID:1024664" /translation="MIQFRVVWVDDRNQIQVNRAWRVQFSSAIGPYKGGMRFHPSVNL SILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGKVMRFCQTLMTELYRHLGAD TDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFTGKGLSFGGSLIRPEATGYGLVYFT EAMLKRHGMGFEGMSVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKE KLARLIEIKASRDGRAADYAKEFGLVYLEGQQPWSVPVDIALPCATQNELDVDAAHQL IANGVKAVAEGANMPTTIEATELFQQAGVLFAPGKAANAGGVATSGLEMAQNAARLGW KAEKVDARLHHIMLDIHHACVEHGGEGEQTNYVQGANIAGFVKVADAMLAQGVI" misc_feature complement(1499041..1500204) /gene="gdhA" /locus_tag="SF1462" /note="NADP-specific glutamate dehydrogenase; Region: PRK09414" /db_xref="CDD:181834" mobile_element 1500239..1501569 /mobile_element_type="insertion sequence:IS2" gene 1500285..1500695 /locus_tag="SF1463" /db_xref="GeneID:1023413" CDS 1500285..1500695 /locus_tag="SF1463" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_707353.3" /db_xref="GeneID:1023413" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 1500330..1500692 /locus_tag="SF1463" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 1500653..1501558 /locus_tag="SF1464" /db_xref="GeneID:1026378" CDS 1500653..1501558 /locus_tag="SF1464" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_707354.1" /db_xref="GeneID:1026378" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature 1500653..1501555 /locus_tag="SF1464" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene 1501953..1502225 /locus_tag="SF1465" /db_xref="GeneID:1024682" CDS 1501953..1502225 /locus_tag="SF1465" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707355.1" /db_xref="GeneID:1024682" /translation="MSRALFAVVLAFPLIALANPHYRPDVEVNVPPEVFSSGGQSAQP CTQCCVYQDQNYSEGAVIKAEGILLQCQRDDKTLSTNPLLWRRVKP" misc_feature 1502091..1502219 /locus_tag="SF1465" /note="Protein of unknown function (DUF1496); Region: DUF1496; pfam07383" /db_xref="CDD:429436" gene complement(1502191..1502598) /locus_tag="SF1466" /db_xref="GeneID:1024670" CDS complement(1502191..1502598) /locus_tag="SF1466" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase" /protein_id="NP_707356.1" /db_xref="GeneID:1024670" /translation="MKMIEVVAAIIERDGKILLAQRPAQSDQAGLWEFAGGKVELDES QQQALVRELNEELDIEATVGEYVASHQREVSGRIIHLHAWHVPDFHGTLQAHEHQALV WCSPEEALQYPLAPADIPLLEAFMALRAARAAD" misc_feature complement(1502194..1502598) /locus_tag="SF1466" /note="pyrimidine (deoxy)nucleoside triphosphate diphosphatase; Region: PRK10546" /db_xref="CDD:182536" gene 1502685..1503305 /locus_tag="SF1467" /db_xref="GeneID:1024648" CDS 1502685..1503305 /locus_tag="SF1467" /note="Code: I; COG: COG0558" /codon_start=1 /transl_table=11 /product="cytochrome oxidase" /protein_id="NP_707357.2" /db_xref="GeneID:1024648" /translation="MLDRHLHPRIKPLLHQCVRVLDKPGITPDGLTLVGFAIGVLALP FLALGWYLAALVVILLNRLLDGLDGALARRRGLTDAGGFLDISLDFLFYALVPFGFIL AAPEQNALAGGWLLFAFIGTGSSFLAFAALAAKHQIDNPGYAHKSFYYLGGLTEGTET ILLFVLGCLFPAWFAWFAWIFGALCWMTTFTRVWSGYLTLKSLQRQ" misc_feature 1502766..1503299 /locus_tag="SF1467" /note="Phosphatidylglycerophosphate synthase [Lipid transport and metabolism]; Region: PgsA; COG0558" /db_xref="CDD:440324" gene complement(1503314..1504636) /locus_tag="SF1468" /pseudo /db_xref="GeneID:1024658" misc_feature complement(1503314..1504636) /locus_tag="SF1468" /note="Similar to Escherichia coli K12 thiosulfate sulfur transferase gi: 1788054 (441 aa). BLAST with identity of 97% in 440 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1504688..1505341) /locus_tag="SF1469" /db_xref="GeneID:1024673" CDS complement(1504688..1505341) /locus_tag="SF1469" /note="Code: G; COG: COG1130" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_707358.2" /db_xref="GeneID:1024673" /translation="MLCVKNVSLRLPESRLLTNVNFTVDKGDIVTLMGPSGCGKSTLF SWMIGALAGQFSCTGELWLNEQRIDMLPTAQRQIGILFQDALLFDQFSVGQNLLLALP ATLKGNARRNAVNDALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP FSRLDVALRDNFRQWVFSEVRALAIPVVQVTHDLQDVPADSSVLDMAQWSENYNKLR" misc_feature complement(1504709..1505341) /locus_tag="SF1469" /note="ABC-type uncharacterized transport system YnjBCD, ATPase component [General function prediction only]; Region: YnjD; COG4136" /db_xref="CDD:443311" gene complement(1505341..1506767) /locus_tag="SF1470" /pseudo /db_xref="GeneID:1024653" misc_feature complement(1505341..1506767) /locus_tag="SF1470" /note="Similar to Escherichia coli K12 transport system permease gi: 1788052 (497 aa). BLAST with identity of 96% in 476 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1506785..1509391) /locus_tag="SF1472" /pseudo /db_xref="GeneID:1024669" misc_feature complement(1506785..1509391) /locus_tag="SF1472" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788051 (390 aa). BLAST with identity of 97% in 868 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element 1507637..1509064 /mobile_element_type="insertion sequence:IS4" gene 1507704..1509050 /locus_tag="SF1471" /db_xref="GeneID:1024668" CDS 1507704..1509050 /locus_tag="SF1471" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_707359.1" /db_xref="GeneID:1024668" /translation="MFPDSFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSNRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature 1507794..1508792 /locus_tag="SF1471" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene complement(1509400..1509947) /locus_tag="SF1473" /pseudogene="unknown" /db_xref="GeneID:1024662" gene complement(1509947..1510651) /gene="ydjZ" /locus_tag="SF1474" /db_xref="GeneID:1024691" CDS complement(1509947..1510651) /gene="ydjZ" /locus_tag="SF1474" /note="Code: S; COG: COG0398" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707361.2" /db_xref="GeneID:1024691" /translation="MKIQSRKIWYYRITLIILLFAMLLAWALLPGVHEFINRSVAAFA AVDQQGIERFIQSYGALAAVVSFLLMILQAIAAPLPAFLITFANASLFGAFWGGLLSW TSSMAGAALCFFIARVMGREVVEKLTGKTVLDSMDGFFTRYGKHTILVCRLLPFVPFD PISYAAGLTSIRFRSFFIATGLGQLPATIVYSWAGSMLTGGTFWFVTELFILFALTVV IFMAKKIWLERQKRND" misc_feature complement(1509956..1510534) /gene="ydjZ" /locus_tag="SF1474" /note="Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family [Function unknown]; Region: TVP38; COG0398" /db_xref="CDD:440167" gene complement(1510669..1511508) /gene="ydjY" /locus_tag="SF1475" /db_xref="GeneID:1024684" CDS complement(1510669..1511508) /gene="ydjY" /locus_tag="SF1475" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707362.2" /db_xref="GeneID:1024684" /translation="MKALRCALFYNSVWRAWRCLFSSSSQNSTPDTNMWICLLRAAAH LLTQKMKDRTMSQHYSVSWKKGLAALCLLAVAGLSGCDQKENAAAKVEYDGLSNSQPL RVDANNHTVTMLVQINGRFLTDDTRHGIVFKDGSNGHKSLFMAYAPPKAFYEALKEAG GTPGENMTMDNKETTHVTGSKLDISVNWQGAAKAYSFDEVIVDSNGKKLDMRFGGNLT AAEEKKTGCLVCLDSCPVGIVSNATYTYGAVEKHGEVKFKGNASVLPADNTLATVTFK ITE" misc_feature complement(1510678..1511205) /gene="ydjY" /locus_tag="SF1475" /note="YdjY domain; Region: ydjY_domain; NF040466" /db_xref="CDD:468506" gene complement(1511351..1512061) /gene="ydjX" /locus_tag="SF1476" /db_xref="GeneID:1024651" CDS complement(1511351..1512061) /gene="ydjX" /locus_tag="SF1476" /note="Code: S; COG: COG0398" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707363.2" /db_xref="GeneID:1024651" /translation="MNAERNFLFACLIFALVIYAIHAFGLFDLLTDLPHLQTLIRQSG LFGYSLYILLFINAPLFLLPGSILVIAGGIVFGPLLGTQLSLIAATLASSCSFLLARW LGRDLLLKYVGHSHTFQAIEKGIARNGIDFLILTRLIPLFPYNIQNYAYGFTTIAFWP YTLISALTTLPGIVIYTVMASDLANEGITLRFILQLCLAGLALFILIQLAKLYARHKH VDLSASRRSPLTHPKNEG" misc_feature complement(1511408..1512061) /gene="ydjX" /locus_tag="SF1476" /note="Uncharacterized membrane protein YdjX, related to fungal oxalate transporter, TVP38/TMEM64 family [Function unknown]; Region: TVP38; COG0398" /db_xref="CDD:440167" gene complement(1512228..1513034) /gene="xthA" /locus_tag="SF1477" /db_xref="GeneID:1024701" CDS complement(1512228..1513034) /gene="xthA" /locus_tag="SF1477" /note="Code: L; COG: COG0708" /codon_start=1 /transl_table=11 /product="exonuclease III" /protein_id="NP_707364.2" /db_xref="GeneID:1024701" /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPL EEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGFPGDDEETQRRIIMAEIPSLLGN VTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGVVDTFRHANPQTADRFSWFDYRSK GFDDNRGLRIDLLLASQPLAECCVETGIDYEIRSMEKPSDHAPVWATFRR" misc_feature complement(1512234..1513034) /gene="xthA" /locus_tag="SF1477" /note="exonuclease III; Provisional; Region: PRK11756" /db_xref="CDD:236970" misc_feature complement(order(1512258..1512260,1512576..1512578, 1512582..1512584,1512699..1512701,1512708..1512710, 1512933..1512935,1513014..1513016)) /gene="xthA" /locus_tag="SF1477" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197320" misc_feature complement(order(1512258..1512263,1512348..1512350, 1512576..1512578,1512582..1512584,1512708..1512710, 1512933..1512935,1513014..1513016)) /gene="xthA" /locus_tag="SF1477" /note="putative catalytic site [active]" /db_xref="CDD:197320" misc_feature complement(order(1512258..1512260,1512267..1512272, 1512348..1512353,1512357..1512359,1512387..1512392, 1512399..1512401,1512576..1512578,1512582..1512584, 1512672..1512674,1512693..1512695,1512699..1512701, 1512708..1512710,1512852..1512857,1512933..1512935, 1512993..1513001,1513005..1513010)) /gene="xthA" /locus_tag="SF1477" /note="active site" /db_xref="CDD:197320" misc_feature complement(order(1512258..1512263,1512933..1512935, 1513008..1513010)) /gene="xthA" /locus_tag="SF1477" /note="metal binding site A [ion binding]; metal-binding site" /db_xref="CDD:197320" misc_feature complement(order(1512267..1512272,1512387..1512392, 1512672..1512674,1512693..1512695,1512699..1512701, 1512708..1512710,1512852..1512857,1512993..1513001, 1513005..1513010)) /gene="xthA" /locus_tag="SF1477" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:197320" misc_feature complement(order(1512258..1512260,1512351..1512353, 1512357..1512359,1512399..1512401,1512576..1512578, 1512582..1512584,1512699..1512701,1512708..1512710)) /gene="xthA" /locus_tag="SF1477" /note="putative AP binding site [nucleotide binding]; other site" /db_xref="CDD:197320" misc_feature complement(order(1512258..1512260,1512576..1512578, 1512582..1512584,1512708..1512710)) /gene="xthA" /locus_tag="SF1477" /note="putative metal binding site B [ion binding]; other site" /db_xref="CDD:197320" gene 1513480..1514700 /gene="cstC" /locus_tag="SF1478" /pseudo /db_xref="GeneID:1024659" misc_feature 1513480..1514700 /gene="cstC" /locus_tag="SF1478" /note="Similar to Escherichia coli N-(alpha)-acetylornithine-(delta)-aminotransferase gb: AAB51148.1 (406 aa). BLAST with identity of 99% in 407 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1514700..1515731 /locus_tag="SF1479" /db_xref="GeneID:1024657" CDS 1514700..1515731 /locus_tag="SF1479" /note="Code: E; COG: COG3138" /codon_start=1 /transl_table=11 /product="arginine succinyltransferase" /protein_id="NP_707365.2" /db_xref="GeneID:1024657" /translation="MVIRPVERSDVSALMQLASKTGGGLTSLPANEATLSARIERAIK TWQGELPKSEQGYVFVLEDSETGTVAGICAIEVAVGLNDPWYNYRVGTLVHASKELNV YNALPTLFLSNDHTGSSELCTLFLDPDWRKEGNGYLLSKSRFMFMAAFRDKFNDKVVA EMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLSQ EAQDVIGQVHPQTAPARAVLEKEGFRYRNYIDIFDGGPTLECDIDRVRAIRKSRLVEV AEGQPAQGDFPACLVANENYHHFRVVLARTDPATERLILTAAQLDALKCHAGDRVRLV RLCAEEKTA" misc_feature 1514700..1515728 /locus_tag="SF1479" /note="arginine succinyltransferase; Provisional; Region: PRK10456" /db_xref="CDD:182474" gene 1515671..1517149 /locus_tag="SF1480" /db_xref="GeneID:1024647" CDS 1515671..1517149 /locus_tag="SF1480" /note="Code: C; COG: COG1012" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="NP_707366.3" /db_xref="GeneID:1024647" /translation="MPRRGSRSSGAPVRRGENSMTLWINGDWITGQGASRVKRNPVSG EVLWQGNDADAAQVEQACRAARAAFPRWARLSLAERQVVVERFAGLLESNKAELTAII ARETGKPRWEAATEVTAMINKIAISIKAYHVRTGEQRSEMPDGAASLRHRPHGVLAVF GPYNFPGHLPNGHIVPALLAGNTIIFKPSELTPWSGEAVMRLWQQAGLPPGVLNLVQG GRETGQALSALEDLDGLLFTGSANTGYQLHRQLSGQPEKILALEMGGNNPLIIDEVAD IDAAVHLTIQSAFVTAGQRCTCARRLLLKSGAQGDAFLASLVAVSQRLTPGNWDDEPQ PFIGGLISEQAAQQVVTAWQQLEAMGGRTLLAPRLLQAGTSLLTPGIIEMTGVGGVPD EEVFGPFLRVWRYDTFDEAIRMANNTRFGLFCGLVSPEREKFDQLLLEARAGIVNWNK PLTGAASTAPFGGIGASGNHRPSACMPQITAHGLWRAWSRTR" misc_feature 1515728..1517092 /locus_tag="SF1480" /note="succinylglutamic semialdehyde dehydrogenase; Reviewed; Region: astD; PRK09457" /db_xref="CDD:181873" misc_feature order(1516148..1516162,1516184..1516186,1516229..1516231, 1516235..1516240,1516379..1516390,1516397..1516399, 1516406..1516411,1516454..1516462,1516556..1516558, 1516850..1516852,1516856..1516858,1516934..1516936, 1517051..1517053) /locus_tag="SF1480" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143414" misc_feature order(1516160..1516162,1516454..1516456,1516547..1516549, 1516556..1516558) /locus_tag="SF1480" /note="catalytic residues [active]" /db_xref="CDD:143414" gene 1517202..1518535 /locus_tag="SF1481" /pseudo /db_xref="GeneID:1024690" misc_feature 1517202..1518535 /locus_tag="SF1481" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788041 (448 aa). BLAST with identity of 97% in 445 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1518624..1519496 /gene="ydjS" /locus_tag="SF1482" /db_xref="GeneID:1024681" CDS 1518624..1519496 /gene="ydjS" /locus_tag="SF1482" /note="Code: E; COG: COG2988" /codon_start=1 /transl_table=11 /product="succinylglutamate desuccinylase" /protein_id="NP_707367.1" /db_xref="GeneID:1024681" /translation="MLELTPLTPPQGALVISAGIHGNETAPVEMLDALLGAISHGEIP LRWRLLVILGNPPALKQGKRYCHSDMNRMFGGRWQLFAESGETCRARELEQCLEDFYD QGKESVRWHLDLHTAIRGSLHPQFGVLPQRDIPWDEKFLTWLGAAGLEALVFHQEPGG TFTHFSVRHFGALACTLELGKALPFGQNDLRQFAVTASAIAALLSGESVGIVRTPPLR YRVVSQITRHSPSFEMHMASDTLNFMPFEKGTLLAQDGEERFTVTHDVEYVLFPNPLV ALGLRAGLMLEKIS" misc_feature 1518627..1519493 /gene="ydjS" /locus_tag="SF1482" /note="succinylglutamate desuccinylase; Provisional; Region: PRK05324" /db_xref="CDD:235408" misc_feature order(1518684..1518686,1518693..1518695,1518813..1518815, 1518834..1518839,1518966..1518968,1519005..1519007, 1519101..1519103,1519113..1519115,1519155..1519157) /gene="ydjS" /locus_tag="SF1482" /note="active site" /db_xref="CDD:349428" gene 1519826..1520311 /gene="spy" /locus_tag="SF1483" /db_xref="GeneID:1024692" CDS 1519826..1520311 /gene="spy" /locus_tag="SF1483" /note="Code: S; COG: COG3678" /codon_start=1 /transl_table=11 /product="periplasmic protein" /protein_id="NP_707368.1" /db_xref="GeneID:1024692" /translation="MRKLTALFVASTLALGAANLAHAADTTTAAPADAKPMMHHKGKF GPHQDMMFKDLNLTDAQKQQIHEIMKGQRDQMKRPPLEERRAMHDIIASDTFDKAKAE AQIAKMEEQRKANMLAHMETQNKIYNILTPEQKKQFNANFEKRLTERPAAKGKMPATA E" misc_feature 1519826..1520308 /gene="spy" /locus_tag="SF1483" /note="periplasmic protein; Reviewed; Region: PRK10455" /db_xref="CDD:182473" misc_feature order(1520075..1520077,1520087..1520089,1520096..1520101, 1520111..1520113,1520117..1520119,1520129..1520131, 1520138..1520140,1520150..1520152,1520162..1520164, 1520174..1520176,1520183..1520188,1520195..1520197, 1520204..1520206,1520237..1520242,1520249..1520251) /gene="spy" /locus_tag="SF1483" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:197366" gene 1520514..1521089 /locus_tag="SF1484" /db_xref="GeneID:1024695" CDS 1520514..1521089 /locus_tag="SF1484" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707369.2" /db_xref="GeneID:1024695" /translation="MEYFDMRKMSVNLWRNAAGETREICTFPPAKRDFYWRASIASIA ANGEFSLFPGMERIVTLLEGGEMLLESADRFNHTLKPLQPFAFTADQVVKAKLTAGQM SMDFNIMTRLDVCKAKVRIAERTFTTFGSRGGVVFVINGAWQLGDKLLTTDQGVCWFD GRHTLRLLQPQGKLLFSEINWLAGHSPDQVQ" misc_feature 1520514..1521086 /locus_tag="SF1484" /note="environmental stress-induced protein Ves; Region: PRK11396" /db_xref="CDD:236905" gene complement(1521049..1521936) /locus_tag="SF1485" /db_xref="GeneID:1024688" CDS complement(1521049..1521936) /locus_tag="SF1485" /note="Code: L; COG: COG0322" /codon_start=1 /transl_table=11 /product="nucleotide excision repair endonuclease" /protein_id="NP_707370.2" /db_xref="GeneID:1024688" /translation="MVRRLTSPRLEFEAAAIYEYPEHLHSFLNDLPTRPGVYLFHGES DTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQ QPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQSIA DEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCW PWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGYKILCKPL LSGNYEITELDPANDQRAS" misc_feature complement(1521079..1521936) /locus_tag="SF1485" /note="excinuclease Cho; Region: PRK10545" /db_xref="CDD:182535" gene complement(1522166..1522993) /gene="nadE" /locus_tag="SF1486" /db_xref="GeneID:1024696" CDS complement(1522166..1522993) /gene="nadE" /locus_tag="SF1486" /note="Code: H; COG: COG0171" /codon_start=1 /transl_table=11 /product="NAD synthetase" /protein_id="NP_707371.1" /db_xref="GeneID:1024696" /translation="MTLQQQIIKALGAKPQINAEEEIRRSVDFLKSYLQTYPFIKSLV LGISGGQDSTLAGKLCQMAINELRQETRNESLQFIAVRLPYGVQADEQDCQDAIAFIQ PDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTSGVVVGT DHAAEAITGFFTKYGDGGTDINPLYRLNKRQGKQLLTALGCPEHLYKKAPTADLEDDR PSLPDEVALGVTYDNIDDYLEGKNLPEQVARTIENWYLKTEHKRRPPINVFDDFWKK" misc_feature complement(1522184..1522990) /gene="nadE" /locus_tag="SF1486" /note="ammonia-dependent NAD(+) synthetase; Region: nadE; PRK00768" /db_xref="CDD:234831" gene 1523195..1523533 /gene="osmE" /locus_tag="SF1487" /db_xref="GeneID:1026055" CDS 1523195..1523533 /gene="osmE" /locus_tag="SF1487" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator OsmE" /protein_id="NP_707372.1" /db_xref="GeneID:1026055" /translation="MNKNMAGILSAAAVLTMLAGCTAYDRTKDQFVQPVVKDVKKGMS RAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCA EYDTDPQAAK" misc_feature 1523204..1523530 /gene="osmE" /locus_tag="SF1487" /note="osmotically-inducible lipoprotein OsmE; Region: PRK11251" /db_xref="CDD:183058" gene 1523832..1524152 /gene="celA" /locus_tag="SF1488" /db_xref="GeneID:1024680" CDS 1523832..1524152 /gene="celA" /locus_tag="SF1488" /note="Code: G; COG: COG1440" /codon_start=1 /transl_table=11 /product="PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB" /protein_id="NP_707373.1" /db_xref="GeneID:1024680" /translation="MEKKHIYLFCSAGMSISLLVSKMRAQAEKYEVPVIIEAFPETLA GEKGQNADVVLLGPQIAYMLPEIQRLLPNKPVEVIDSLLYGKVDGLGVLKAAVAAIKK AAAN" misc_feature 1523832..1524149 /gene="celA" /locus_tag="SF1488" /note="PTS sugar transporter subunit IIB; Region: PRK10499" /db_xref="CDD:182499" misc_feature order(1523859..1523861,1523865..1523870,1523874..1523879, 1524006..1524008,1524081..1524083) /gene="celA" /locus_tag="SF1488" /note="active site" /db_xref="CDD:99906" misc_feature 1523859..1523879 /gene="celA" /locus_tag="SF1488" /note="P-loop; other site" /db_xref="CDD:99906" misc_feature 1523859..1523861 /gene="celA" /locus_tag="SF1488" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99906" gene 1524237..1525586 /gene="celB" /locus_tag="SF1489" /db_xref="GeneID:1024718" CDS 1524237..1525586 /gene="celB" /locus_tag="SF1489" /note="Code: G; COG: COG1455" /codon_start=1 /transl_table=11 /product="PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC" /protein_id="NP_707374.1" /db_xref="GeneID:1024718" /translation="MSNVIASLEKVLLPFAVKIGKQPHVNAIKNDFIRLMPLTLAGAM FVLINNVFLSFGEGSFFYSLGIRLDASTIETLNGLKGIGGNVYNGTLGIMSLMAPFFI GMALAEERKVDALAAGLLSVAAFMTVTPYSVGEAYAVGANWLGGANIISGIIIGLVVA EMFTFIVRRNWVIKLPDSVPASVSRSFSALIPGFIILSVMGIIAWALNTWGTNFHQII MDTISTPLASLGSVVGWAYVIFVPLLWFFGIHGALALTALDNGIMTPWALENIATYQQ YGSVEAALAAGKTFHIWAKPMLDSFIFLGGSGATLGLILAIFIASRRADYRQVAKLAL PSGIFQINEPILFGLPIIMNPVMFIPFVLVQPILAAITLAAYYMGIIPPVTNIAPWTM PTGLGAFFNTNGSVAALLVALFNLGIATLIYLPFVVVANKAQNAIDKEESEEDIANP" misc_feature 1524237..1525580 /gene="celB" /locus_tag="SF1489" /note="PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional; Region: PRK10297" /db_xref="CDD:182363" gene 1525645..1525995 /gene="celC" /locus_tag="SF1490" /db_xref="GeneID:1026385" CDS 1525645..1525995 /gene="celC" /locus_tag="SF1490" /note="Code: G; COG: COG1447" /codon_start=1 /transl_table=11 /product="PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA" /protein_id="NP_707375.2" /db_xref="GeneID:1026385" /translation="MMDLDNIPDTQTEAEELEEVVMGLIINSGQARSLAYAALKQAKQ GDFAAAKAMMDQSRMALNEAHLVQTKLIEGDAGEGKMKVSLVLVHAQDHLMTSMLARE LITELIELHEKLKA" misc_feature 1525645..1525989 /gene="celC" /locus_tag="SF1490" /note="PTS N,N'-diacetylchitobiose transporter subunit IIA; Region: PRK10454" /db_xref="CDD:182472" misc_feature order(1525693..1525695,1525855..1525857,1525903..1525908, 1525927..1525929) /gene="celC" /locus_tag="SF1490" /note="methionine cluster [active]" /db_xref="CDD:238133" misc_feature order(1525738..1525740,1525909..1525911,1525915..1525923) /gene="celC" /locus_tag="SF1490" /note="active site" /db_xref="CDD:238133" misc_feature 1525909..1525911 /gene="celC" /locus_tag="SF1490" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238133" misc_feature 1525918..1525920 /gene="celC" /locus_tag="SF1490" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238133" misc_feature 1526003..1527622 /note="Similar to Escherichia coli K12 negative transcriptional regulator of cel operon gi: 1788030 (281 aa). BLAST with identity of 98% in 540 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." gene 1526003..1526701 /locus_tag="SF1490a" /pseudogene="unknown" /db_xref="GeneID:16608322" mobile_element complement(1526680..1527447) /mobile_element_type="insertion sequence:IS1" gene complement(1526695..1527090) /gene="insB" /locus_tag="SF1492" /db_xref="GeneID:1024679" CDS complement(1526695..1527090) /gene="insB" /locus_tag="SF1492" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707376.1" /db_xref="GeneID:1024679" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1526698..1527087) /gene="insB" /locus_tag="SF1492" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1527117..1527392) /gene="insA" /locus_tag="SF1493" /db_xref="GeneID:1024702" CDS complement(1527117..1527392) /gene="insA" /locus_tag="SF1493" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707377.1" /db_xref="GeneID:1024702" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1527120..1527371) /gene="insA" /locus_tag="SF1493" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1527727..1529079 /gene="celF" /locus_tag="SF1494" /db_xref="GeneID:1024697" CDS 1527727..1529079 /gene="celF" /locus_tag="SF1494" /note="Code: G; COG: COG1486" /codon_start=1 /transl_table=11 /product="6-phospho-beta-glucosidase" /protein_id="NP_707378.1" /db_xref="GeneID:1024697" /translation="MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVSELWLVDVEGG KAKLDIIFDLCQRMIDNAGVPMKLYKTLDCREALKDADFVTTQLRVGQLPARELDERI PLSHGYLGQETNGAGGLFKGLRTIPVIFDIVKDVEELCPNAWVINFTNPAGMVTEAVY RHTGFKRFIGVCNIPIGMKMFIHDVLMLKDSDDLSIDLFGLNHMVFIKDVLVNGKSRF AELLDGVASGQLKVSGVKNIFDLPFSEGLIRSLNLLPCSYLLYYFKQKEMLAIEMGEY YKGGARAQVVQKVEKQLFELYKNPELKVKPKELEQRGGAYYSDAACEVINAIYNDKQA EHYVNIPHHGHIDNIPADWAVEMTCKLGRDGATPHPRITHFDDKVMGLIHTIKGFEIA ASNAALSGEFNDVLLALNLSPLVHSDRDAELLAREMILAHEKWLPNFADCIAELKKAH " misc_feature 1527739..1529034 /gene="celF" /locus_tag="SF1494" /note="Glycoside Hydrolases Family 4; Phospho-beta-glucosidase; Region: GH4_P_beta_glucosidase; cd05296" /db_xref="CDD:133432" misc_feature order(1527763..1527768,1527772..1527774,1527844..1527849, 1527865..1527867,1527985..1527993,1528060..1528062, 1528120..1528122,1528168..1528170,1528174..1528176, 1528594..1528596,1528660..1528662,1528675..1528677) /gene="celF" /locus_tag="SF1494" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:133432" misc_feature order(1528012..1528014,1528060..1528062,1528174..1528176, 1528243..1528245,1528333..1528335,1528498..1528500, 1528570..1528572,1528660..1528665,1528675..1528677) /gene="celF" /locus_tag="SF1494" /note="sugar binding site [chemical binding]; other site" /db_xref="CDD:133432" misc_feature order(1528240..1528242,1528333..1528335) /gene="celF" /locus_tag="SF1494" /note="divalent metal binding site [ion binding]; other site" /db_xref="CDD:133432" misc_feature order(1528300..1528302,1528309..1528311,1528357..1528359, 1528366..1528368,1528717..1528719,1528753..1528755, 1528810..1528815,1528819..1528821,1528825..1528836) /gene="celF" /locus_tag="SF1494" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:133432" misc_feature order(1528456..1528458,1528462..1528464,1528471..1528479, 1528513..1528515,1528519..1528524,1528852..1528857, 1528876..1528878,1528888..1528890,1528909..1528911, 1528933..1528935,1528942..1528947,1528975..1528980, 1528984..1528986,1528990..1528992) /gene="celF" /locus_tag="SF1494" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133432" gene 1529092..1529850 /gene="ydjC" /locus_tag="SF1495" /db_xref="GeneID:1025623" CDS 1529092..1529850 /gene="ydjC" /locus_tag="SF1495" /note="Code: S; COG: COG3394" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707379.1" /db_xref="GeneID:1025623" /translation="MERLLIVNADDFGLSKGQNYGIIEACRNGIVTSTTALVNGQAID HAVQLSRDEPSLAIGMHFVLTMGKPLTAMPGLTRDGVLGKWIWQLAEEDALPLEEITQ ELASQYLRFIELFGRKPTHLDSHHHVHMFPQIFPIVARFAAEEGIALRIDRQPLSNAG DLPANLRSSQGFSSAFYGEEISEALFLQVLDDASHRGDPSLEVMCHPAFIDNTIRQSA YCFPRLTELEVLTSASLKYAIAERGYRLGSYLDV" misc_feature 1529092..1529847 /gene="ydjC" /locus_tag="SF1495" /note="chitin disaccharide deacetylase; Region: PRK02134" /db_xref="CDD:235007" misc_feature order(1529119..1529130,1529266..1529274,1529449..1529466, 1529707..1529709,1529758..1529760) /gene="ydjC" /locus_tag="SF1495" /note="YdjC motif; other site" /db_xref="CDD:212114" misc_feature order(1529119..1529124,1529128..1529130,1529266..1529268, 1529272..1529274,1529452..1529454,1529458..1529460, 1529464..1529466,1529707..1529709,1529758..1529760) /gene="ydjC" /locus_tag="SF1495" /note="putative active site [active]" /db_xref="CDD:212114" misc_feature order(1529137..1529139,1529203..1529205,1529212..1529226, 1529323..1529328,1529332..1529334,1529395..1529397, 1529419..1529421,1529428..1529430) /gene="ydjC" /locus_tag="SF1495" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:212114" gene complement(1529897..1532158) /gene="katE" /locus_tag="SF1496" /db_xref="GeneID:1024677" CDS complement(1529897..1532158) /gene="katE" /locus_tag="SF1496" /note="Code: P; COG: COG0753" /codon_start=1 /transl_table=11 /product="hydroperoxidase II" /protein_id="NP_707380.2" /db_xref="GeneID:1024677" /translation="MSQHNEKNPHQHQSPLHDSSEAKPGMDSLAPEDGSHRPAAEPTP PGAQPTAPGSLKAPDTRNEKLNSLEDVRKGSENYALTTNQGVRIADDQNSLRAGNRGP TLLEDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKSLSDITKADFLSDPNKIT PVFVRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFV HAVKPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHT FRLINAEGKATFVRFHWKPLAGKASLVWDEAQKLTGRDPDFHRRELWEAIEAGDFPEY ELGFQLIPEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFH PGHIVPGLDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYHNFQRDGMHR MGIDTNPANYEPNSINDNWPRETPPGPKRGGFESYQERVEGNKVRERSPSFGEYYSHP RLFWLSQTPFEQRHIVDGFSFELSKVVRPYIRERVVDQLAHIDLTLAQAVAKNLGIEL TDDQLNITPPPDVNGLKKDPSLSLYAIPDGDVKGRVVAILLNDEVRSADLLAILKAMK AKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIADNGDAN YYLMEAYKHLKPIALAGDARKFKATIKVADQGEEGIVEADSTDGSFMDELLTLMAEHR VWSRIPKIDKIPA" misc_feature complement(1529900..1532149) /gene="katE" /locus_tag="SF1496" /note="hydroperoxidase II; Provisional; Region: katE; PRK11249" /db_xref="CDD:236886" gene 1532341..1532604 /locus_tag="SF1497" /db_xref="GeneID:1024686" CDS 1532341..1532604 /locus_tag="SF1497" /codon_start=1 /transl_table=11 /product="cell division modulator" /protein_id="NP_707381.2" /db_xref="GeneID:1024686" /translation="MRLVKPVMKKPLRQQNRQIISYVPRTEPAPPEHAIKMDSFRDVW MLRGKYVAFVLMGESFLRSPAFTVPESAQRWANQIRQEGEVTE" misc_feature 1532362..1532601 /locus_tag="SF1497" /note="cell division activator CedA; Region: PRK10113" /db_xref="CDD:182246" gene 1532881..1533621 /gene="ydjO" /locus_tag="SF1498" /db_xref="GeneID:1024715" CDS 1532881..1533621 /gene="ydjO" /locus_tag="SF1498" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707382.1" /db_xref="GeneID:1024715" /translation="MRREMFSTNLIQSNYGDLNIKSLAFDSFKERLESTMAALTFFIS TGQCDCDEIAESNFNRMIAYMSNINYDASKLGAPALSFDTYLQDNVKYRVIINNLYGS EFRIRDINENFVGMDFTCEFRPEKMTNLINIKNRLVIHYLRTIYYEKNYIHPAGSIFA AIQKNESLLKFPSIISMLNINLLFNPLNLPGMGSGVLEDIMSIPDSSLRKRLGYEVLS FSLQAHSLSQECIDKLDIFFADDLFKYG" mobile_element complement(1533617..1534384) /mobile_element_type="insertion sequence:IS1" gene complement(1533632..1534027) /gene="insB" /locus_tag="SF1499" /db_xref="GeneID:1024698" CDS complement(1533632..1534027) /gene="insB" /locus_tag="SF1499" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707383.1" /db_xref="GeneID:1024698" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMPDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1533635..1534024) /gene="insB" /locus_tag="SF1499" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1534054..1534329) /gene="insA" /locus_tag="SF1500" /db_xref="GeneID:1024693" CDS complement(1534054..1534329) /gene="insA" /locus_tag="SF1500" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707384.1" /db_xref="GeneID:1024693" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1534057..1534308) /gene="insA" /locus_tag="SF1500" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(1534476..1535866) /locus_tag="SF1501" /pseudogene="unknown" /db_xref="GeneID:1024678" gene complement(1535999..1536589) /locus_tag="SF1502" /db_xref="GeneID:1024675" CDS complement(1535999..1536589) /locus_tag="SF1502" /note="Code: R; COG: COG1988" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707386.2" /db_xref="GeneID:1024675" /translation="MTAEGHLLFSIACAVFAKNAELTPVLAQGDWWHIVPSAILTCLL PDIDHPKSFLGQRLKWISKPIARAFGHRGFTHSLLAVFALLATFYLKVPEGWFIPADA LQGMVLGYLSHILADMLTPAGVPLLWPCRWRFRLPILVPQKGNQLERFICMALFVWSV WMPHSLPENSAVRWSSQMINTLQIQFHRLIKHQVEY" misc_feature complement(1536005..1536589) /locus_tag="SF1502" /note="metal-dependent hydrolase; Region: PRK11648" /db_xref="CDD:183256" gene complement(1536752..1537420) /gene="yniC" /locus_tag="SF1503" /db_xref="GeneID:1024713" CDS complement(1536752..1537420) /gene="yniC" /locus_tag="SF1503" /note="Code: R; COG: COG0637" /codon_start=1 /transl_table=11 /product="2-deoxyglucose-6-phosphate phosphatase" /protein_id="NP_707387.1" /db_xref="GeneID:1024713" /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRRN ELPDTLGLRIDMVVDLWYARQPWNGPSRQEVVERVIARAISLVEETRPLLPGVREAVA LCKEQGLLVGLASASPLHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK LGVDPLTCVALEDSVNGMIASKAARMRSIVVPAPEAQNDPRFVLANVKLSSLTELTAK DLLG" misc_feature complement(1536755..1537420) /gene="yniC" /locus_tag="SF1503" /note="hexitol phosphatase HxpB; Region: PRK10826" /db_xref="CDD:236770" misc_feature complement(order(1536890..1536895,1536902..1536907, 1536977..1536979,1537073..1537078,1537370..1537384)) /gene="yniC" /locus_tag="SF1503" /note="active site" /db_xref="CDD:319808" misc_feature complement(order(1536890..1536895,1536902..1536907, 1536977..1536979,1537073..1537078,1537370..1537384)) /gene="yniC" /locus_tag="SF1503" /note="active site" /db_xref="CDD:319808" gene 1537567..1538103 /locus_tag="SF1504" /db_xref="GeneID:1024689" CDS 1537567..1538103 /locus_tag="SF1504" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707388.1" /db_xref="GeneID:1024689" /translation="MTYQQAGRIAVLKRILGWVIFIPALISTLISLLKFMNTRQENQE GINAVMLDFAHVMIDMMQANTPFLNLFWYNSPTPNFNGGVNVMFWVIFILIFVGLALQ DSGARMSRQARFLREGVEDQLILEKAKGEEGLTREQIESRIVVPHHTIFLQFFSLYIL PVICIAAGYVFFSLLGFI" misc_feature 1537609..1538097 /locus_tag="SF1504" /note="YniB-like protein; Region: YniB; pfam14002" /db_xref="CDD:433637" gene complement(1538144..1539004) /locus_tag="SF1505" /db_xref="GeneID:1024724" CDS complement(1538144..1539004) /locus_tag="SF1505" /note="Code: S; COG: COG3001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707389.1" /db_xref="GeneID:1024724" /translation="MWQAISRLLSEQLGEGEIELRNELPGGEVHAAWHLRYAGHDFFV KCDERELLPGFTAEADQLELLSRSKTVTVPKVWAVGADRDYSFLVMDYLPPRPLDAHS AFILGQQIARLHQWSDQPQFGLDFDNSLSTTPQPNTWQRRWSTFFAEQRIGWQLELAA EKGIAFGNIDAIVEHIQQRLASHQPQPSLLHGDLWSGNCALGPDGPYIFDPACDWGDR ECDLAMLPLHTEQPPQIYDGYQSVSPLPADFLERQPVYQLYTLLNRARLFGGQHLVIA QQSLDRLLAA" misc_feature complement(1538150..1539004) /locus_tag="SF1505" /note="Fructosamine kinase; Region: Fructosamin_kin; pfam03881" /db_xref="CDD:427564" gene complement(1539110..1539400) /locus_tag="SF1506" /db_xref="GeneID:1024672" CDS complement(1539110..1539400) /locus_tag="SF1506" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707390.1" /db_xref="GeneID:1024672" /translation="MASGDLVHYVITVMLHEDTLTEINELNNYLTRDGFLLTMTDDEG NIHELGTNTFGLISTQSEEEIRELVSGLTQSATGKDPEITITTWEEWNSNRK" misc_feature complement(1539122..1539376) /locus_tag="SF1506" /note="Endoribonuclease GhoS; Region: GhoS; pfam11080" /db_xref="CDD:431644" gene complement(1539501..1540430) /gene="pfkB" /locus_tag="SF1507" /db_xref="GeneID:1024716" CDS complement(1539501..1540430) /gene="pfkB" /locus_tag="SF1507" /note="Code: G; COG: COG1105" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase" /protein_id="NP_707391.2" /db_xref="GeneID:1024716" /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCTAPVFEPGGGGINV ARAIAHLGGSATAIFPAGGATGEHLVSLLADENVPVATVEAKDWTRQNLHVHVEASGE QYRFVMPGAALNEDEFRQLEEQVLEIESGAILVISGSLPPGVKLEKLTQLISAAQNQG IRCIIDSSGEALSAALAIGNIELVKPNQKELSALVNRELTQPDDVRKAAQEIVNSGKA KRVVVSLGPQGALGVDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAENASLEEMV RFGVAAGSAATLNQGTRLCSHDDTQKIYAYLSR" misc_feature complement(1539504..1540430) /gene="pfkB" /locus_tag="SF1507" /note="6-phosphofructokinase 2; Provisional; Region: PRK10294" /db_xref="CDD:182361" misc_feature complement(order(1540020..1540022,1540260..1540262, 1540266..1540268,1540284..1540286,1540296..1540298)) /gene="pfkB" /locus_tag="SF1507" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:238570" misc_feature complement(order(1539663..1539665,1539669..1539671, 1539741..1539743,1539759..1539761,1539870..1539872, 1539876..1539878,1539933..1539935)) /gene="pfkB" /locus_tag="SF1507" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:238570" gene 1540750..1541475 /locus_tag="SF1508" /db_xref="GeneID:1024723" CDS 1540750..1541475 /locus_tag="SF1508" /note="Code: M; COG: COG3137" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707392.2" /db_xref="GeneID:1024723" /translation="MLAGGMFASLNAAADDSVFTVMDDPASAKKPFEGNLNAGYLAQS GNTKSSSLTADTTMTWYGQTTAWSLWGNASNTSSNDERSSEKYAAGGRSRFNLTDYDY LFGQASWLTDRYNGYRERDVLTAGYGRQFLNGPVHSFRFEFGPGVRYDKYTDNASETQ PLGYASGAYAWQLTDNAKFTQGVSVFGAEDTTLNSESALNVAINEHFGLKVAYNVTWN SEPPESAPEHTDRRTTLSLGYSM" misc_feature 1540765..1541472 /locus_tag="SF1508" /note="Putative salt-induced outer membrane protein YdiY [Cell wall/membrane/envelope biogenesis]; Region: YdiY; COG3137" /db_xref="CDD:442371" gene complement(1541528..1541746) /locus_tag="SF1507a" /db_xref="GeneID:16608323" CDS complement(1541528..1541746) /locus_tag="SF1507a" /codon_start=1 /transl_table=11 /product="transmembrane anchor protein" /protein_id="YP_008439246.1" /db_xref="GeneID:16608323" /translation="MTMCTTPPDGCNNKKSLDACPFCYTPLSRTRDMQDTGMPTKRFD KKHWKMVVVLLAICGAMLLLRWAAMIWG" misc_feature complement(1541531..1541632) /locus_tag="SF1507a" /note="small membrane protein YniD; Region: membrane_YniD; NF041491" /db_xref="CDD:469379" gene complement(1541807..1542767) /locus_tag="SF1509" /pseudo /db_xref="GeneID:1024712" misc_feature complement(1541807..1542767) /locus_tag="SF1509" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788015 (472 aa). BLAST with identity of 99% in 320 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element complement(1542767..1543534) /mobile_element_type="insertion sequence:IS1" gene complement(1542782..1543177) /gene="insB" /locus_tag="SF1510" /db_xref="GeneID:1024703" CDS complement(1542782..1543177) /gene="insB" /locus_tag="SF1510" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707393.1" /db_xref="GeneID:1024703" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1542785..1543174) /gene="insB" /locus_tag="SF1510" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1543204..1543479) /gene="insA" /locus_tag="SF1511" /db_xref="GeneID:1024709" CDS complement(1543204..1543479) /gene="insA" /locus_tag="SF1511" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707394.1" /db_xref="GeneID:1024709" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1543207..1543458) /gene="insA" /locus_tag="SF1511" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1544438..1546366 /gene="thrS" /locus_tag="SF1512" /db_xref="GeneID:1023405" CDS 1544438..1546366 /gene="thrS" /locus_tag="SF1512" /note="Code: J; COG: COG0441" /codon_start=1 /transl_table=11 /product="threonyl-tRNA synthetase" /protein_id="NP_707395.1" /db_xref="GeneID:1023405" /translation="MPVITLPDGSQRHYDHAVSPMDVALDIGPGLAKACIAGRVNGEL VDACDLIENDAQLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVIDNGF YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHEARETFANRGESYKVSIL DENIAHDDKPGLYFHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQ IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTRPEKRIGSDEMWDRAEADLAVALEENNI PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVIMNITDSQSEYVNELTQKLSNAG IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVESGKVAVRTRRGKDLGSMDVNEV IEKLQQEIRSRSLKQLEE" misc_feature 1544438..1546354 /gene="thrS" /locus_tag="SF1512" /note="Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: ThrS; COG0441" /db_xref="CDD:440210" gene 1546478..1546912 /gene="infC" /locus_tag="SF1513" /db_xref="GeneID:1026392" CDS 1546478..1546912 /gene="infC" /locus_tag="SF1513" /note="Code: J; COG: COG0290" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-3" /protein_id="NP_707396.1" /db_xref="GeneID:1026392" /translation="MSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKS SKEQKKKQKVIQVKEIKFRPSTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQ QIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ" misc_feature 1546478..1546906 /gene="infC" /locus_tag="SF1513" /note="Translation initiation factor IF-3 [Translation, ribosomal structure and biogenesis]; Region: InfC; COG0290" /db_xref="CDD:440059" gene 1547009..1547206 /gene="rpmI" /locus_tag="SF1514" /db_xref="GeneID:1024707" CDS 1547009..1547206 /gene="rpmI" /locus_tag="SF1514" /note="Code: J; COG: COG0291" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L35" /protein_id="NP_707397.2" /db_xref="GeneID:1024707" /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL RPKAMVSKGDLGLVIACLPYA" misc_feature 1547009..1547200 /gene="rpmI" /locus_tag="SF1514" /note="Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Region: RpmI; COG0291" /db_xref="CDD:440060" gene 1547259..1547615 /gene="rplT" /locus_tag="SF1515" /db_xref="GeneID:1024687" CDS 1547259..1547615 /gene="rplT" /locus_tag="SF1515" /note="Code: J; COG: COG0292" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L20" /protein_id="NP_707398.1" /db_xref="GeneID:1024687" /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD KVAFTTLVEKAKAALA" misc_feature 1547262..1547603 /gene="rplT" /locus_tag="SF1515" /note="50S ribosomal protein L20; Provisional; Region: rplT; PRK05185" /db_xref="CDD:179959" misc_feature order(1547274..1547291,1547295..1547306,1547319..1547342, 1547346..1547357,1547364..1547369,1547379..1547384, 1547391..1547435,1547439..1547447,1547454..1547456, 1547466..1547468,1547484..1547489,1547496..1547501, 1547508..1547510,1547532..1547540) /gene="rplT" /locus_tag="SF1515" /note="23S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:197305" misc_feature order(1547364..1547366,1547376..1547378,1547385..1547390, 1547394..1547399,1547406..1547408,1547523..1547534, 1547541..1547543,1547559..1547564,1547580..1547585) /gene="rplT" /locus_tag="SF1515" /note="L21 binding site [polypeptide binding]; other site" /db_xref="CDD:197305" misc_feature order(1547427..1547429,1547436..1547441,1547448..1547450, 1547457..1547462,1547466..1547468,1547538..1547540, 1547547..1547549,1547556..1547558) /gene="rplT" /locus_tag="SF1515" /note="L13 binding site [polypeptide binding]; other site" /db_xref="CDD:197305" gene 1548065..1549048 /gene="pheS" /locus_tag="SF1517" /db_xref="GeneID:1024708" CDS 1548065..1549048 /gene="pheS" /locus_tag="SF1517" /note="Code: J; COG: COG0016" /codon_start=1 /transl_table=11 /product="phenylalanyl-tRNA synthetase subunit alpha" /protein_id="NP_707400.1" /db_xref="GeneID:1024708" /translation="MSHLAELVASAKAAISQASDVAALDNVRVEYLGKKGHLTLQMTT LRELPPEERPAAGAVINEAKEQVQQALNARKAELESAALNARLAAETIDVSLPGRRIE NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF DATRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH PNVLRNVSIDPEVYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK" misc_feature 1548065..1549045 /gene="pheS" /locus_tag="SF1517" /note="Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]; Region: PheS; COG0016" /db_xref="CDD:439787" gene 1549063..1551450 /gene="pheT" /locus_tag="SF1518" /db_xref="GeneID:1024717" CDS 1549063..1551450 /gene="pheT" /locus_tag="SF1518" /note="Code: J; COG: COG0072" /codon_start=1 /transl_table=11 /product="phenylalanyl-tRNA synthetase subunit beta" /protein_id="NP_707401.1" /db_xref="GeneID:1024717" /translation="MKFSELWLREWVNPAIDSDTLANQITMAGLEVDGVEPVAGSFHG VVVGEVVECAQHPNADKLRVTKVNVGGDRLLDIVCGAPNCRQGLRVAVATIGAVLPGD FKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPIGTDIREYLKLDDNTIEI SVTPNRADCLGIIGVARDVAVLNQLPLVEPEIVPVGATIDDTLPITVEAPEACPRYLG RVVKGINVKAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIEGGI VVRMAKEGETLVLLDGTEAKLNADTLVIADHNKALAMGGIFGGEHSGVNDETQNVLLE CAFFSPLSITGRARRHGLHTDASHRYERGVDPVLQHKAMERATRLLIDICGGEAGPVI DITNEATLPKRATITLRRSKLDRLIGHHIADEQVTDILRRLGCEVTEGKDEWQAVAPS WRFDMEIEEDLVEEVARVYGYNNIPDEPVQASLIMGTHREADLSLKRVKTLLNDKGYQ EVITYSFVDPKVQQMIHPGVEALLLASPISVEMSAMRLSLWTGLLATVVYNQNRQQNR VRIFESGLRFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESV LDLTGKLNEVEFRAEANPALHPGQSAAIYLKGERIGFVGVVHPELERKLDLNGRTLVF ELEWNKLADRVVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL FDVYRGKGVAEGYKSLAISLILQDTSRTLEEEEIAATVAKCVEALKERFQASLRD" misc_feature 1549063..1551447 /gene="pheT" /locus_tag="SF1518" /note="phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629" /db_xref="CDD:234804" gene 1551455..1551754 /gene="ihfA" /locus_tag="SF1519" /db_xref="GeneID:1024710" CDS 1551455..1551754 /gene="ihfA" /locus_tag="SF1519" /note="Code: L; COG: COG0776" /codon_start=1 /transl_table=11 /product="integration host factor subunit alpha" /protein_id="NP_707402.1" /db_xref="GeneID:1024710" /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKDE" misc_feature 1551455..1551745 /gene="ihfA" /locus_tag="SF1519" /note="integration host factor subunit alpha; Reviewed; Region: ihfA; PRK00285" /db_xref="CDD:178961" misc_feature order(1551464..1551469,1551524..1551526,1551587..1551589, 1551593..1551601,1551605..1551607,1551617..1551619, 1551623..1551625,1551632..1551652,1551665..1551667, 1551671..1551673,1551680..1551682,1551686..1551688, 1551698..1551700,1551707..1551709,1551716..1551718) /gene="ihfA" /locus_tag="SF1519" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:259857" misc_feature order(1551476..1551478,1551485..1551487,1551527..1551529, 1551539..1551541,1551548..1551553,1551557..1551562, 1551578..1551589,1551593..1551595,1551680..1551685, 1551689..1551691,1551695..1551697,1551722..1551727) /gene="ihfA" /locus_tag="SF1519" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:259857" gene 1551855..1552835 /gene="btuC" /locus_tag="SF1520" /db_xref="GeneID:1024714" CDS 1551855..1552835 /gene="btuC" /locus_tag="SF1520" /note="Code: PH; COG: COG0609" /codon_start=1 /transl_table=11 /product="vtamin B12-transporter permease" /protein_id="NP_707403.1" /db_xref="GeneID:1024714" /translation="MLTLARQQQRQNIRWLLCLSVLMLLALLLSLCAGEQWISPGDWF TPRGELFVWQIRLPRTLAVLLVGAALAISGAVMQALFENPLAEPGLLGVSNGAGVGLI AAVLLGQGQLPNWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM TWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLLWICCQSRPMNMLALGE ISARQLGLPMWFWRNVLVAATGWMVGVSVALAGAIGFIGLVIPHILRLCGLTDHRVLL PGCALAGASALLLADIVARLALAAAELPIGVVTATLGAPVFIWLLLKAGR" misc_feature 1551855..1552832 /gene="btuC" /locus_tag="SF1520" /note="vtamin B12-transporter permease; Provisional; Region: PRK03784" /db_xref="CDD:235159" misc_feature order(1552086..1552088,1552098..1552106,1552467..1552472, 1552476..1552484,1552488..1552493,1552497..1552514, 1552518..1552526,1552647..1552649,1552668..1552670) /gene="btuC" /locus_tag="SF1520" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119348" misc_feature order(1552101..1552103,1552107..1552109,1552122..1552124, 1552284..1552286,1552290..1552295,1552302..1552307, 1552314..1552319,1552326..1552328,1552335..1552340, 1552344..1552346,1552380..1552385,1552392..1552394, 1552617..1552619,1552773..1552775,1552782..1552787, 1552794..1552796,1552803..1552808,1552815..1552817) /gene="btuC" /locus_tag="SF1520" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(1552344..1552346,1552422..1552424,1552593..1552595, 1552605..1552607,1552740..1552742,1552764..1552766) /gene="btuC" /locus_tag="SF1520" /note="putative PBP binding regions [active]" /db_xref="CDD:119348" gene 1552898..1553449 /gene="btuE" /locus_tag="SF1521" /db_xref="GeneID:1024729" CDS 1552898..1553449 /gene="btuE" /locus_tag="SF1521" /note="Code: O; COG: COG0386" /codon_start=1 /transl_table=11 /product="glutathione peroxidase" /protein_id="NP_707404.1" /db_xref="GeneID:1024729" /translation="MQDSILTTVVKDIDGEVTTLEKYAGNVLLIVNVASKCGLTPQYE QLENIQKAWADRGFVVLGFPCNQFLEQEPGSDEEIKTYCTTTWGVTFPMFSKIEVNGE GRHPLYQKLIAAAPTTVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGKVIQ RFSPDMTPEDPIVMESIKLALAK" misc_feature 1552898..1553446 /gene="btuE" /locus_tag="SF1521" /note="putative glutathione peroxidase; Provisional; Region: btuE; PRK10606" /db_xref="CDD:182585" misc_feature order(1553006..1553008,1553108..1553110,1553330..1553332) /gene="btuE" /locus_tag="SF1521" /note="catalytic residues [active]" /db_xref="CDD:238207" misc_feature order(1553105..1553107,1553114..1553116,1553120..1553122, 1553129..1553131,1553138..1553140,1553150..1553152) /gene="btuE" /locus_tag="SF1521" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238207" gene 1553449..1554198 /gene="btuD" /locus_tag="SF1522" /db_xref="GeneID:1024735" CDS 1553449..1554198 /gene="btuD" /locus_tag="SF1522" /note="Code: PH; COG: COG1120" /codon_start=1 /transl_table=11 /product="vitamin B12-transporter ATPase" /protein_id="NP_707405.1" /db_xref="GeneID:1024735" /translation="MSIVMQLQDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLA RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAMPVWHYLTLHQHDKT RTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEP MNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRRE EVLTPPNLAQAYGMNFRRLDIEGHRMLISTI" misc_feature 1553461..1554192 /gene="btuD" /locus_tag="SF1522" /note="vitamin B12-transporter ATPase; Provisional; Region: PRK03695" /db_xref="CDD:235150" gene 1554276..1554740 /gene="nlpC" /locus_tag="SF1523" /db_xref="GeneID:1024725" CDS 1554276..1554740 /gene="nlpC" /locus_tag="SF1523" /note="Code: M; COG: COG0791" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_707406.1" /db_xref="GeneID:1024725" /translation="MRFCLILITALFLAGCSHHKAPPPNARLSDSITVIAGLNDQLQS WHGTPYRYGGMTRRGVDCSGFVVVTMRDRFDLHLPRETKQQASIGTQIDKDELLPGDL VFFKTGSGQNGLHVGIYDTNNQFIHASTSKGVMRSSLDNVYWQKNFWQARRI" misc_feature <1554393..1554737 /gene="nlpC" /locus_tag="SF1523" /note="bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase; Region: spr; PRK10838" /db_xref="CDD:236773" gene 1554987..1555700 /locus_tag="SF1524" /db_xref="GeneID:1026757" CDS 1554987..1555700 /locus_tag="SF1524" /note="Code: T; COG: COG2200" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707407.1" /db_xref="GeneID:1026757" /translation="MKIFLENLYHSDCYFLPIRDNQQLLVGVELITHFSSEDGTVRIP TSRVIAQLTEEQHWQLFSEQLELLKSCQHFFIQHKLFAWLNLTPQVATLLLDRDNYAG ELLKYPFIELLINENYPHLNEGKDNRDLLSLSQMYPLVLGNLGAGNSTMKAVFDGLFT RVMLEKGFIQQQITHRSFEPFIRAIQAQISPCCNCIIAGGIDTPEILAQITPFDFHAL QGCLWPAVPINQITTLVQR" misc_feature 1555026..1555646 /locus_tag="SF1524" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cl29561" /db_xref="CDD:453023" gene 1555764..1557200 /locus_tag="SF1525" /db_xref="GeneID:1026408" CDS 1555764..1557200 /locus_tag="SF1525" /note="Code: S; COG: COG0397" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707408.1" /db_xref="GeneID:1026408" /translation="MTLSFITRWRDELPETYTALSPTPLNNARLIWHNTELANTLSIP SSLFKNAAGVWGGETLLPGMSPLAQVYSGHQFVVWAGQLGDGRGILLGEQLLADGTTM DWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDSPVYRE TVEPGAMLMRVAPSHLRFGHFEHFYYRREPEKVRQLADFAIRHYWSHLEDDEDKYRLW FNDVVARTASLIAQWQTVGFAHGVMNTDNMSLLGLTLDYGPFGFLDDYEPGFICNHSD HQGRYSFDNQPAVALWNLQRLAQTLSPFVAVDALNEALDSYQQVLLTHYGQRMRQKLG FMTEQKEDNALLNELFSLMARERSDYTRTFRMLSLTEQHSAASPLREEFIDRAAFDDW FARYRGRLQQDEVSDSERQQLMQSVNPALVLRNWLAQRAIEAAEKGDMMELHRLHEAL RNPFSDRDDDYVSRPPDWGKRLEVSCSS" misc_feature 1555764..1557197 /locus_tag="SF1525" /note="Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O) [Posttranslational modification, protein turnover, chaperones]; Region: SelO; cl46173" /db_xref="CDD:480513" gene complement(1557204..1557422) /locus_tag="SF1525a" /db_xref="GeneID:16608324" CDS complement(1557204..1557422) /locus_tag="SF1525a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439247.1" /db_xref="GeneID:16608324" /translation="MLYQLLLIFMRYTDSRKLTPETDANHKTASPQPIRRITSQTLLG PDGKLIIDHDGQEYLLRKTQAGKLLLTK" misc_feature complement(1557207..1557374) /locus_tag="SF1525a" /note="hypothetical protein; Provisional; Region: PRK10183" /db_xref="CDD:182290" gene complement(1557527..1558573) /gene="aroH" /locus_tag="SF1526" /db_xref="GeneID:1024719" CDS complement(1557527..1558573) /gene="aroH" /locus_tag="SF1526" /note="Code: E; COG: COG0722" /codon_start=1 /transl_table=11 /product="phospho-2-dehydro-3-deoxyheptonate aldolase" /protein_id="NP_707409.1" /db_xref="GeneID:1024719" /translation="MNRTDELRTARIESLVTPAELALRYPVTPGVATHVTDSRRRIEK ILNGEDKRLLVIIGPCSIHDLTAAMEYATRLQSLRNQYQSRLEIVMRTYFEKPRTVVG WKGLISDPDLNGSYRVNHGLELARKLLLQVNELGVPTATEFLDMVTGQFIADLISWGA IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRAARASHMFLSPDKNGQMT IYQTSGNPYGHIIMRGGKKPNYHADDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR QLEVCEDICQQIRNGSTEIAGIMAESFLREGTQKIVGGQPLTYGQSITDPCLGWEDTE RLVEKLAFAVDTRF" misc_feature complement(1557530..1558573) /gene="aroH" /locus_tag="SF1526" /note="Trp-sensitive 3-deoxy-7-phosphoheptulonate synthase AroH; Region: PRK12756" /db_xref="CDD:183726" gene complement(1558730..1559563) /gene="ydiA" /locus_tag="SF1527" /db_xref="GeneID:1024720" CDS complement(1558730..1559563) /gene="ydiA" /locus_tag="SF1527" /note="Code: S; COG: COG1806" /codon_start=1 /transl_table=11 /product="PEP synthetase regulatory protein" /protein_id="NP_707410.1" /db_xref="GeneID:1024720" /translation="MDNAVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVE NESRARAVKDQIDAIYHQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQ EMKLDPTPIAHRTHGLNPNNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSR CGKTPTSLYLAMQFGIRAANYPFIADDMDNLVLPASLKPLQHKLFGLTIDPERLAAIR EERRENSRYASLRQCRMEVAEVEALYRKNQIPWINSTNYSVEEIATKILDIMGLSRRM Y" misc_feature complement(1558733..1559545) /gene="ydiA" /locus_tag="SF1527" /note="pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator; Region: PRK05339" /db_xref="CDD:235419" gene 1559895..1562273 /gene="ppsA" /locus_tag="SF1528" /db_xref="GeneID:1024744" CDS 1559895..1562273 /gene="ppsA" /locus_tag="SF1528" /note="Code: G; COG: COG0574" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate synthase" /protein_id="NP_707411.1" /db_xref="GeneID:1024744" /translation="MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVS VPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVTQLAKAGAQIRQWIIDTPFQP ELENAIREAYAQLSADDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAV KHVFASLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQV VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAANRPAIVRRTMGSKKIRMVYAPTQEHG KQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEKHYGRPMDIEWAKDGHTGKLFIVQ ARPETVRSRGQVMERYTLHSQGKIIAEGRAIGHRIGAGPVKVIHDISEMNRIEPGDVL VTDMTDPDWEPIMKKASAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGENV TVSCAEGDTGYVYAELLEFSVKSSSVETMPDLPLKVMMNVGNPDRAFDFACLPSEGVG LARLEFIINRMIGVHPRALLEFDDQEPQLQNEIREMMKGFDSPREFYVGRLTEGIATL GAAFYPKRVIVRLSDFKSNEYANLVGGERYEPDEENPMLGFRGAGRYVSDSFRDCFAL ECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVVEELARQGLKRGENGLKIIMMCEIP SNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRA AKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK" misc_feature 1559910..1562270 /gene="ppsA" /locus_tag="SF1528" /note="phosphoenolpyruvate synthase; Validated; Region: PRK06464" /db_xref="CDD:235809" gene complement(1562330..1564030) /gene="ydiD" /locus_tag="SF1529" /db_xref="GeneID:1024704" CDS complement(1562330..1564030) /gene="ydiD" /locus_tag="SF1529" /note="Code: IQ; COG: COG0318" /codon_start=1 /transl_table=11 /product="short chain acyl-CoA synthetase" /protein_id="NP_707412.1" /db_xref="GeneID:1024704" /translation="MHPTGPQLGPDVLFRESKMKVTLTFNEQRRAAYRQQGLWGDASL ADYWQQTARAMPDKIAVVDNHGASYTYSALDHAASCLANWMLAKGIESGDRIAFQLPG WCEFTVIYLACLKIGAVSVPLLPSWREAELVWVLNKCQAKMFFAPTLFKQTRPVDLIL PLQNQLPQLQQIVGVDKLAPATSSLSLSQIIADNIPLTTAITTHGDELAAVLFTSGTE GLPKGVMLTHNNILASERAYCARLNLTWLDVFMMPAPLGHATGFLHGVTAPFLIGARS VLLDIFTPDACLALLEQQRCTCMLGATPFVYDLLNLLEKQPADLSALRFFLCGGTTIP KKVARECQQRSIKLLSVYGSTESSPHAVVNLDNSLSRFMHTDGYAAAGVEIKVVDDAR KTLPPGCEGEEASRGPNVFMGYFDEPELTARALDEEGWYYSGDLCRMDEAGYIKITGR KKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLS LEEMAAFFSRKRVAKYKYPEHIVVIEKLPRTASDKIQKFLLRKDIIRRLTQDVCEEIE " misc_feature complement(1562333..1563973) /gene="ydiD" /locus_tag="SF1529" /note="medium-chain fatty-acid--CoA ligase; Region: PRK06087" /db_xref="CDD:180393" misc_feature complement(order(1563365..1563370,1563374..1563391, 1563398..1563400)) /gene="ydiD" /locus_tag="SF1529" /note="acyl-activating enzyme (AAE) consensus motif; other site" /db_xref="CDD:341229" misc_feature complement(order(1562402..1562404,1562648..1562650, 1562681..1562683,1562690..1562692,1562726..1562728, 1562966..1562983,1563041..1563046,1563389..1563391)) /gene="ydiD" /locus_tag="SF1529" /note="putative AMP binding site [chemical binding]; other site" /db_xref="CDD:341229" misc_feature complement(order(1562459..1562461,1562648..1562659, 1562681..1562683,1562690..1562692,1562726..1562728, 1562966..1562983,1563041..1563046,1563107..1563109, 1563116..1563121,1563125..1563127,1563266..1563271, 1563389..1563391)) /gene="ydiD" /locus_tag="SF1529" /note="putative active site [active]" /db_xref="CDD:341229" misc_feature complement(order(1562459..1562461,1562480..1562482, 1562651..1562659,1563044..1563046,1563107..1563109, 1563116..1563121,1563269..1563271)) /gene="ydiD" /locus_tag="SF1529" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:341229" gene complement(1564033..1564326) /gene="ydiT" /locus_tag="SF1530" /db_xref="GeneID:1024748" CDS complement(1564033..1564326) /gene="ydiT" /locus_tag="SF1530" /note="Code: C; COG: COG2440" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707413.1" /db_xref="GeneID:1024748" /translation="MSQNATVNVDIKLGVNKFHVDEGHPHIILTENPDINEFRKLMKA CPAGLYKQDDVGNIHFDPAGCLECGTCRVLCGNTILEQWQYPAGTFGIDFRYG" misc_feature complement(1564036..1564308) /gene="ydiT" /locus_tag="SF1530" /note="4Fe-4S dicluster domain; Region: Fer4_8; cl19102" /db_xref="CDD:473136" gene complement(1564323..1565612) /gene="ydiS" /locus_tag="SF1531" /db_xref="GeneID:1024711" CDS complement(1564323..1565612) /gene="ydiS" /locus_tag="SF1531" /note="Code: C; COG: COG0644" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_707414.1" /db_xref="GeneID:1024711" /translation="MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKN MTGGRLYAHTLEAIIPGFAVSAPVERKVTREKISFLTEESAVTLDFHREQPDVPQHAS YTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILAD GVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSD GLMGGGFLYTNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEY SAHMVPEGGLAMVPQLVNEGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAA KERADFSANSLAQYKRELEQSCVMRDMQHFRKIPALMENPRLFSQYPRMVADIMNEMF TIDGKPNQPVRKMIMGHAKKIGLINLLKDGIKGATAL" misc_feature complement(1564326..1565612) /gene="ydiS" /locus_tag="SF1531" /note="oxidoreductase; Provisional; Region: PRK10015" /db_xref="CDD:182194" gene complement(1565668..1566606) /gene="ydiR" /locus_tag="SF1532" /db_xref="GeneID:1024740" CDS complement(1565668..1566606) /gene="ydiR" /locus_tag="SF1532" /note="Code: C; COG: COG2025" /codon_start=1 /transl_table=11 /product="electron transfer flavoprotein subunit YdiR" /protein_id="NP_707415.1" /db_xref="GeneID:1024740" /translation="MSQLNSVWVFSDNPERYAELFGGAQQWGQQVYAIVQNTDQAQAV MPYGPKCIYVLEQNDALQRTENYAESIAALLKDKHPAMLLLAATKRGKALAARLSVQL NAALVNDATAVDIVDGHICAEHRMYGGLAFAQEKINSPLAIITLAPGVQEPCTSDTSH QCPTETVPYVAPRHEILCRERRAKAASSVDLSKAKRVVGVGRGLAAQDDLKMVHELAA VLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGVKVI VAINKDKNAPIFNYADYGLVGDIYKVVPALISQLSR" misc_feature complement(1565671..1566606) /gene="ydiR" /locus_tag="SF1532" /note="electron transfer flavoprotein subunit alpha; Region: PRK11916" /db_xref="CDD:183380" gene complement(1566626..1567390) /gene="ydiQ" /locus_tag="SF1533" /db_xref="GeneID:1024700" CDS complement(1566626..1567390) /gene="ydiQ" /locus_tag="SF1533" /note="Code: C; COG: COG2086" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707416.2" /db_xref="GeneID:1024700" /translation="MKIITCFKLVPEEQDIVVTPEYTLNFDNADAKISQFDLNAIEAA SQLATDDDEIAALTVAGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALA AAIEKIGFDLLIFGEGSGDLYAQQVGLLVGEILQLPVINAVSAIQRQGNTLVIERTLE DDVEVIELSVPAVLCVTSDINVPRIPSMKAILGAGKKPVNQWQASDIDWSQSAPLAEL VGIRVPPQTERKHIILDNDSPEAIAELAEHLKKALN" misc_feature complement(1566629..1567390) /gene="ydiQ" /locus_tag="SF1533" /note="electron transfer flavoprotein; Region: PRK12342" /db_xref="CDD:183455" gene 1567712..1568212 /locus_tag="SF1534" /pseudo /db_xref="GeneID:1024746" misc_feature 1567712..1568212 /locus_tag="SF1534" /note="Similar to Escherichia coli K12 ARAC-type regulatory protein gi: 1787987 (304 aa). BLAST with identity of 98% in 160 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element 1568191..1568958 /mobile_element_type="insertion sequence:IS1" gene 1568246..1568521 /gene="insA" /locus_tag="SF1535" /db_xref="GeneID:1024734" CDS 1568246..1568521 /gene="insA" /locus_tag="SF1535" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707417.1" /db_xref="GeneID:1024734" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 1568267..>1568518 /gene="insA" /locus_tag="SF1535" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1568548..1568943 /gene="insB" /locus_tag="SF1536" /db_xref="GeneID:1024738" CDS 1568548..1568943 /gene="insB" /locus_tag="SF1536" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707418.1" /db_xref="GeneID:1024738" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 1568551..1568940 /gene="insB" /locus_tag="SF1536" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1569506..1570267) /locus_tag="SF1537" /db_xref="GeneID:1024745" CDS complement(1569506..1570267) /locus_tag="SF1537" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="transcriptional regulator YdeO" /protein_id="NP_707419.1" /db_xref="GeneID:1024745" /translation="MSLVCSVIFIHHAFNANILDKDYAFSDGEILMVDNAVRTHFEPY ERHFKEIGFNENTIKKYLQCTNIQTVTVPVPAKFLRASNVPTGLLNEMIAYLNSEERN HHNFSELLLFSCLSIFAACKGFITLLTNGVLSVSGKVRNIVNMKLAHPWKLKDICDCL YISESLLKKKLKQEQTTFSQILLDARMQHAKNLIRVEGSVNKIAEQCGYASTSYFIYA FRKHFGNSPKRVSKEYRCQRHTGMNTGNTMSALAI" misc_feature complement(1569509..1570267) /locus_tag="SF1537" /note="transcriptional regulator YdeO; Provisional; Region: PRK09940" /db_xref="CDD:182157" gene complement(1570335..1570538) /locus_tag="SF1537a" /db_xref="GeneID:16608325" CDS complement(1570335..1570538) /locus_tag="SF1537a" /codon_start=1 /transl_table=11 /product="two-protein-system connector protein SafA" /protein_id="YP_008439248.1" /db_xref="GeneID:16608325" /translation="MHATTVKNKITQRDNYKEIMSVIVVVLLLTLTLIAIFSAIDQLS ISEMGRIARDLTHFIINSLQDWK" misc_feature complement(1570347..1570538) /locus_tag="SF1537a" /note="Two-component-system connector protein; Region: SafA; pfam17073" /db_xref="CDD:319116" gene complement(1570786..1573065) /locus_tag="SF1538" /db_xref="GeneID:1024706" CDS complement(1570786..1573065) /locus_tag="SF1538" /note="Code: C; COG: COG0243" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_707420.1" /db_xref="GeneID:1024706" /translation="MKKKIESYQGAAGGWGAVKSVANAVRKQMDIRHDVIAMFDMNKP EGFDCPGCAWPDPKNSASFDICENGAKAIAWEVTDKQVNASFFAENTVQSLLTWGDHE LEAAGRLTQPLKYDAVSDCYKPLSWQQAFDEIGARLQSYSDPNQVEFYTSGRTSNEAA FLYQLFAREYGSNNFPDCSNMCHEPTSVGLAASIGVGKGTVLLEDFEKCDLVICIGHN PGTNHPRMLTSLRALVKRGAKMIAINPLQERGLERFTAPQNPFEMLTNSETQLASAYY NVRIGGDMALLKGMMRLLIERDDAASAAGRPSLLDDEFIQTHTVGFDELRRDVLNSEW KDIERISGLSQTQIAELADAYAAAERTIICYGMGITQHEHGTQNVQQLVNLLLMKGNI GKPGAGICPLRGHSNVQGDRTVGITEKPSAEFLARLGERYGFPPPHAPGHAAIASMQA ICTGQARALICMGGNFALAMPDREASAVPLTQLDLAVHVATKLNRSHLLTARHSYILP VLGRSEIDMQKSGAQAVTVEDSMSMIHASRGVLKPAGVMLKSECAVVAGIAQAALPQS VVAWEYLVEDYDRIRNDIEAVLPEFADYNQRIRHPGGFHLINAAAERRWMTPSGKANF ITSKGLLEDPSSAFNSKLVMATVRSHDQYNTTIYGMDDRYRGVFGQRDVVFMSAKQAK ICRVKNGERVNLIALTPDGKRSSRRMDRLKVVIYPMADRSLVTYFPESNHMLTLDNHD PLSGIPGYKSIPVELEPSN" misc_feature complement(1570789..1573065) /locus_tag="SF1538" /note="acid resistance putative oxidoreductase YdeP; Region: PRK09939" /db_xref="CDD:182156" gene complement(1573399..1574136) /locus_tag="SF1539" /db_xref="GeneID:1024760" CDS complement(1573399..1574136) /locus_tag="SF1539" /codon_start=1 /transl_table=11 /product="minor fimbrial subunit, D-mannose specific adhesin-like protein" /protein_id="NP_707421.1" /db_xref="GeneID:1024760" /translation="MSQHISCWNDYGGWYDTDHINLVQGSAFAGSLQSYKGSLYWNNV TYPFPLTTNTNVLDIGDKTPMPLPLKLYITPVGAAGGVVIKAGEVIARIHMYKIATLG SGNPRNFTWNIISNNSVVMLTGGCTVDSRNVTVDLPDFPGSAEIPLGVYCSSEQKLSF YLSGATTDSSRQVFANTAPDATKASGVGVTLMRNGKILATGENVSLGTVNKSKVPLGL SATYGQTGNKVSAGTVQSVIGVTFIYE" misc_feature complement(1573801..>1574136) /locus_tag="SF1539" /note="Mannose binding domain of FimH and related proteins; Region: FimH_man-bind; cl07688" /db_xref="CDD:447481" misc_feature complement(order(1573816..1573818,1573822..1573824, 1573840..1573842,1573846..1573848,1574083..1574085, 1574089..1574091,1574104..1574112)) /locus_tag="SF1539" /note="mannosyl binding site [chemical binding]; other site" /db_xref="CDD:198456" misc_feature complement(1573402..>1573761) /locus_tag="SF1539" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" mobile_element 1574149..1574916 /mobile_element_type="insertion sequence:IS1" gene 1574204..1574479 /gene="insA" /locus_tag="SF1540" /db_xref="GeneID:1024757" CDS 1574204..1574479 /gene="insA" /locus_tag="SF1540" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707422.1" /db_xref="GeneID:1024757" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 1574225..>1574476 /gene="insA" /locus_tag="SF1540" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1574506..1574901 /gene="insB" /locus_tag="SF1541" /db_xref="GeneID:1024739" CDS 1574506..1574901 /gene="insB" /locus_tag="SF1541" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707423.1" /db_xref="GeneID:1024739" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 1574509..1574898 /gene="insB" /locus_tag="SF1541" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" mobile_element 1574917..1575840 /note="partial" /mobile_element_type="insertion sequence:IS600" gene 1574979..1575797 /locus_tag="SF1542" /db_xref="GeneID:1024754" CDS 1574979..1575797 /locus_tag="SF1542" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707424.1" /db_xref="GeneID:1024754" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <1574979..1575770 /locus_tag="SF1542" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1576151..1576312) /locus_tag="SF1542a" /db_xref="GeneID:16608326" CDS complement(1576151..1576312) /locus_tag="SF1542a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439249.1" /db_xref="GeneID:16608326" /translation="MILRHRTGPAFQAIKDSLAVGLNALTLTDITKNATYGVEIESLV LEINAPASS" gene complement(1576309..1576512) /locus_tag="SF1542b" /db_xref="GeneID:16608327" CDS complement(1576309..1576512) /locus_tag="SF1542b" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439250.1" /db_xref="GeneID:16608327" /translation="MLERTMAFKHYDVVRAAPPSDLAEKLTHKLKEGWQPFGSPVAIT PYTLMQAIAAEGDVVVSGATEPE" misc_feature complement(1576348..1576485) /locus_tag="SF1542b" /note="Domain of unknown function (DUF1737); Region: DUF1737; pfam08410" /db_xref="CDD:429981" gene 1576757..1577092 /gene="ycgW" /locus_tag="SF1543" /db_xref="GeneID:1024726" CDS 1576757..1577092 /gene="ycgW" /locus_tag="SF1543" /codon_start=1 /transl_table=11 /product="anti-adapter protein IraM" /protein_id="NP_707425.1" /db_xref="GeneID:1024726" /translation="MKWIVIDTVIQPSCGISFSVIWSKIKLIIWYQSDAFLPPESIFT LTHTGIMLNNKVLPVTIYNVVPFNKTFWNLIKNSQECPTNTDNVLNECFNNRCTLQIC PYGLKQQSP" misc_feature 1576757..1577089 /gene="ycgW" /locus_tag="SF1543" /note="anti-adapter protein IraM; Provisional; Region: PRK09919" /db_xref="CDD:236633" gene complement(1578004..1578080) /locus_tag="SF4467" /db_xref="GeneID:3161773" tRNA complement(1578004..1578080) /locus_tag="SF4467" /product="tRNA-Arg" /codon_recognized="AGA" /db_xref="GeneID:3161773" gene complement(1578182..1578257) /locus_tag="SF4468" /db_xref="GeneID:3161777" tRNA complement(1578182..1578257) /locus_tag="SF4468" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161777" gene complement(1578402..1579223) /locus_tag="SF1544" /db_xref="GeneID:1024741" CDS complement(1578402..1579223) /locus_tag="SF1544" /note="cryptic prophage-like protein" /codon_start=1 /transl_table=11 /product="antitermination protein" /protein_id="NP_707426.1" /db_xref="GeneID:1024741" /translation="MKLEDLPKYYSPKSPGLTDASASTSKDALSITDVMAAQGMTQNR AEMGFSAFLGKMGISMNDRARATELLADYALSRCDRVAALRKLPAEIKPVVMRIMASY AFEDYARSAASKKQCPCCYGEKFIESIVFTNKIQYPDGKPPVWAKCTKGVYPFYWEEW KKVREVVKVACPECGGKGEVSTACKDCRGRGVAIHREESVKRGMPVIRDCQRCGGRGY ERLPSTEAFNAICEVTNQITRASWEKTVKKFYDALVTRFDIEEAWAERQLKKVTR" misc_feature complement(1578891..1579151) /locus_tag="SF1544" /note="Antitermination protein; Region: Antiterm; pfam03589" /db_xref="CDD:427381" misc_feature complement(1578651..>1578728) /locus_tag="SF1544" /note="Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cl21539" /db_xref="CDD:473904" misc_feature complement(1578429..1578686) /locus_tag="SF1544" /note="Antitermination protein; Region: Antiterm; pfam03589" /db_xref="CDD:427381" gene complement(1579238..1579594) /gene="rus" /locus_tag="SF1545" /db_xref="GeneID:1024733" CDS complement(1579238..1579594) /gene="rus" /locus_tag="SF1545" /codon_start=1 /transl_table=11 /product="endodeoxyribonuclease RUS" /protein_id="NP_707427.1" /db_xref="GeneID:1024733" /translation="MLIDLVLPYPPTVNTYWRRRGSTYFISEEGKRYRRAVALIVRQQ RLKLSLSGRLAIKVIAEPPDKRRRDLDNILKAPLDALTHAGVLMDDEQFDEINIVRGQ PVSGGRLGVKIYPIMH" misc_feature complement(1579247..1579594) /gene="rus" /locus_tag="SF1545" /note="Holliday junction resolvase RusA (prophage-encoded endonuclease) [Replication, recombination and repair]; Region: RusA; COG4570" /db_xref="CDD:443627" gene complement(1579607..1580656) /locus_tag="SF1546" /db_xref="GeneID:1023944" CDS complement(1579607..1580656) /locus_tag="SF1546" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707428.1" /db_xref="GeneID:1023944" /translation="MRVLLRPVLVPELGLVVLKPGRESMPVFHNTRVLVEPEPKSMRN LPSGVVPAVRQPLVEDKTLLPFFSNARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHH SETVIHRYGTGAMVLCWHCDNQLRDQTSESLEQLAHQNLSAWMIDVIGHAISGTQERE LSLAELSWWAVRNQVADALPEAVLRRSLGLRAEKIRSMYRESDIVPGEQTATSILKQR TKNLAPLPHAHQQQNPQQEKTVVSIAVDPESPESFMKRPKRRRWVNEKYKRWVKTQPC ACCGKPADDPHHLIGHGQGGMGTKSHDIFTLPLCREHHNELHADPLAFEEKHGSQVDL IFRFLDHAFATGVPG" misc_feature complement(1579619..1580176) /locus_tag="SF1546" /note="Protein of unknown function (DUF968); Region: DUF968; cl23554" /db_xref="CDD:474016" gene complement(1581003..1581251) /locus_tag="SF1547" /db_xref="GeneID:1024721" CDS complement(1581003..1581251) /locus_tag="SF1547" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707429.2" /db_xref="GeneID:1024721" /translation="MNIEELRKIFCEDGLYAVCVENGNIVSHYRIVCLQKNGAALINF VDARVTDGFILRDGEFVTSLQALKEIGIKAGFSAFSEE" gene complement(1581472..1581627) /locus_tag="SF1547a" /db_xref="GeneID:16608328" CDS complement(1581472..1581627) /locus_tag="SF1547a" /codon_start=1 /transl_table=11 /product="regulatory protein" /protein_id="YP_008439251.1" /db_xref="GeneID:16608328" /translation="MKQQKAMLIALIVICLTVIVTALVTRKDLCEVRIRTGQTEVAVF TAYEPEE" misc_feature complement(1581487..1581609) /locus_tag="SF1547a" /note="Hok/gef family; Region: HOK_GEF; pfam01848" /db_xref="CDD:426473" gene complement(1581699..1581986) /gene="relE" /locus_tag="SF1548" /db_xref="GeneID:1024736" CDS complement(1581699..1581986) /gene="relE" /locus_tag="SF1548" /note="Code: S; COG: COG2026" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707430.1" /db_xref="GeneID:1024736" /translation="MAYFLDFDERALKEWRKLGSTVREQLKKKLVEVLESPRIEANKL RGMPDCYKIKLRSSGYRLVYQVIDEKVVVFVISVGKRERSEVYSEAVKRIL" misc_feature complement(1581726..1581983) /gene="relE" /locus_tag="SF1548" /note="mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system [Defense mechanisms]; Region: RelE; COG2026" /db_xref="CDD:441629" gene complement(1581986..1582225) /gene="relB" /locus_tag="SF1549" /db_xref="GeneID:1024732" CDS complement(1581986..1582225) /gene="relB" /locus_tag="SF1549" /note="Code: L; COG: COG3077" /codon_start=1 /transl_table=11 /product="bifunctional antitoxin/transcriptional repressor RelB" /protein_id="NP_707431.1" /db_xref="GeneID:1024732" /translation="MGSINLRIDDELKARSYAALEKMGVTPSEALRLMLEYIADNERL PFKQTLLSDEDAELVEIVKERLRNPKPVRVTLDEL" misc_feature complement(1581989..1582225) /gene="relB" /locus_tag="SF1549" /note="type II toxin-antitoxin system RelB/DinJ family antitoxin; Region: PRK11235" /db_xref="CDD:183047" mobile_element complement(1582509..1583772) /mobile_element_type="insertion sequence:IS600" gene complement(1582552..1583265) /locus_tag="SF1550" /db_xref="GeneID:1023401" CDS complement(1582552..1583265) /locus_tag="SF1550" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 integrase core domain-containing protein" /protein_id="NP_707432.1" /db_xref="GeneID:1023401" /translation="MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQ KRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYT CEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGL KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHS RLGNISPATFREKYHQMAA" misc_feature complement(1582579..>1583265) /locus_tag="SF1550" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1583406..1583708) /locus_tag="SF1551" /db_xref="GeneID:1024727" CDS complement(1583406..1583708) /locus_tag="SF1551" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707433.1" /db_xref="GeneID:1024727" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(1583436..1583708) /locus_tag="SF1551" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1583809..1584789 /locus_tag="SF1552" /db_xref="GeneID:1024780" CDS 1583809..1584789 /locus_tag="SF1552" /note="Code: GEPR; COG: COG0477; proline permease II-like protein" /codon_start=1 /transl_table=11 /product="low-affinity transport protein" /protein_id="NP_707434.1" /db_xref="GeneID:1024780" /translation="MGAGAEISGAGTMLAEYAPKGKRGIISSFVAMGTNCGTLSATAI WAFMFFILSKEELLAWGWRIPFLASVVVMVFAIWLRMNLKESPVFEKVNDSNQPTAKP APAGSMFQSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTLLFNKAIPTDALMISSIL GFMTIPFLGWLSDKIGRRIPYIIMNTSAIVLAWPMLSIIVDKSYAPSTIMVALIVIHN CAVLGLFALENITMAEMFGCKNRFTRMAISKEIGGLIASGFGPILAGIFCTMTESWYP IAIMIMAYSVIGLISALKMPEVKDRDLSALEDAAEDQPRVVRAAQPSRSL" misc_feature <1583812..1584675 /locus_tag="SF1552" /note="metabolite-proton symporter; Region: 2A0106; TIGR00883" /db_xref="CDD:273320" gene 1584878..1586338 /gene="ydfI" /locus_tag="SF1553" /db_xref="GeneID:1024767" CDS 1584878..1586338 /gene="ydfI" /locus_tag="SF1553" /note="Code: G; COG: COG0246" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_707435.1" /db_xref="GeneID:1024767" /translation="MGNNLLSAKATLPVYDRNNLAPRIVHLGFGAFHRAHQGVYADIL ATEHFSDWGYYEVNLIGGEQQIADLQQQDNLYTVAEMSADAWTARVVGVVKKALHVQM DGLETVLAAMCEPQIAIVSLTITEKGYFHSPATGQLMLEHPMVAADVQNPHQPKTATG VIVEALARRKAAGLPAFTVMSCDNMPENGHVMRDVVTSYAQAVDVKLAQWIEDNVTFP STMVDRIVPAVTEDTLAKIEQLTGVRDPAGVACEPFRQWVIEDNFVAGRPEWEKAGAE LVSDVLPYEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMEDEHYRHAAYGMMLQEQAP TLKVQGVDLQDYANRLIARYSNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLAHDSKF DLLALGVAGWMRYVGGVDEQGNPIEISDPLLPVIQKAVQSSAEGKARVQSLLAIKAIF GDDLPDNSLFTAKVTEAYLSLLAHGAKATVAKYSVK" misc_feature 1584893..1586326 /gene="ydfI" /locus_tag="SF1553" /note="Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]; Region: MtlD; COG0246" /db_xref="CDD:440016" gene complement(1586374..1586577) /locus_tag="SF1554" /db_xref="GeneID:1024779" CDS complement(1586374..1586577) /locus_tag="SF1554" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707436.1" /db_xref="GeneID:1024779" /translation="MTTYDRNRNAITTGSRVMVSGTGHTGKILSIDTEGLTAEQIRRG KTVVVEGCEEKLAPLDLIRLGMN" misc_feature complement(1586383..1586577) /locus_tag="SF1554" /note="putative selenium-binding protein YdfZ; Region: YdfZ_fam; TIGR03318" /db_xref="CDD:132361" gene complement(1586755..1587441) /locus_tag="SF1555" /pseudogene="unknown" /db_xref="GeneID:1024774" gene complement(1587530..1588276) /gene="ydfG" /locus_tag="SF1556" /db_xref="GeneID:1024772" CDS complement(1587530..1588276) /gene="ydfG" /locus_tag="SF1556" /note="Code: R; COG: COG0300" /codon_start=1 /transl_table=11 /product="malonic semialdehyde reductase" /protein_id="NP_707438.2" /db_xref="GeneID:1024772" /translation="MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELTDEL GDNLYIAQLDVRNRAAIEEMLASLPAEWSNIDILVNNAGLALGMEPAHKASVEDWETM IDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN LRTDLHGTTVRVTDIEPGLVGGTEFSNVRFKGDDGKAEKTYQNTVALTPEDVSEAVWW VSTLPAHVNINTLEMMPVTQSYAGLNVHRQ" misc_feature complement(1587533..1588276) /gene="ydfG" /locus_tag="SF1556" /note="bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG; Region: PRK10538" /db_xref="CDD:182531" misc_feature complement(order(1587725..1587730,1587737..1587748, 1587824..1587826,1587836..1587838,1587875..1587883, 1587962..1587964,1588028..1588036,1588112..1588120, 1588178..1588186,1588241..1588252,1588256..1588258)) /gene="ydfG" /locus_tag="SF1556" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187604" misc_feature complement(order(1587539..1587541,1587776..1587781, 1587785..1587790,1587794..1587799,1587806..1587811, 1587818..1587823,1587827..1587835,1587839..1587871, 1587911..1587913,1587923..1587925,1587932..1587934, 1587941..1587946,1587953..1587958,1587965..1587970, 1587977..1587982,1587986..1587991,1588004..1588009, 1588103..1588105)) /gene="ydfG" /locus_tag="SF1556" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187604" misc_feature complement(order(1587539..1587592,1587596..1587598, 1587602..1587604,1587623..1587625,1587644..1587646, 1587785..1587793,1587797..1587802,1587809..1587811, 1587818..1587823,1587827..1587832,1587842..1587853, 1587857..1587868,1587932..1587934,1587941..1587943, 1587953..1587955,1587965..1587967,1587977..1587982, 1587986..1587991,1588004..1588006,1588103..1588105)) /gene="ydfG" /locus_tag="SF1556" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187604" misc_feature complement(order(1587824..1587826,1587836..1587838, 1587875..1587877,1587959..1587961)) /gene="ydfG" /locus_tag="SF1556" /note="active site" /db_xref="CDD:187604" gene 1588413..1590458 /gene="dcp" /locus_tag="SF1557" /db_xref="GeneID:1024728" CDS 1588413..1590458 /gene="dcp" /locus_tag="SF1557" /note="Code: E; COG: COG0339" /codon_start=1 /transl_table=11 /product="dipeptidyl carboxypeptidase II" /protein_id="NP_707439.2" /db_xref="GeneID:1024728" /translation="MTTMNPFLVQSTLPYLAPHFDQIANHHYRPAFDEGMQQKRAEIA AIALNPQTPDFNNTILALEQSGELITRVTSVFFAMTAAHTNDELQRLDEQFSAELAEL ANDIYLNGELFARVDAVWQRRESLGLDSESIRLVEVIHQRFVLAGAKLAQADKAKLKV LNTEAATLTSQFNQRLLAANKSGGLVVNDIAQLAGMSEQEIALAAEAAREKGLDNKWL IPLLNTTQQPALAEMRDRATREKLFIAGWTRAEKNDANDTRAIIQRLVEIRAQQAKLL GFPHYAAWKIADQMAKTPEAALNFMREIVPAARQRASDELASIQAVIDKQQGGFSAQP WDWAFYAEQVRREKFDLDEAQLKPYFELNTVLNEGVFWTANQLFGIKFVERFDIPVYH PDVRVWEIFDHNGVGLALFYGDFFARDSKSGGAWMGNFVEQSTLNETHPVIYNVCNYQ KPAAGEPALLLWDDVITLFHEFGHTLHGLFARQRYATLSGTNTPRDFVEFPSQINEHW ATHPQVFARYARHYQSGAAMPDELQQKMRNASLFNKGYEMSELLSAALLDMRWHCLEE NEAMQDVDDFELRALVAENMDLPAIPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADD GYQWFVEQGGLTRENGQRFREAILSRGNSEDLERLHRQWRGKAPQIMPMLQHRGLNI" misc_feature 1588413..1590452 /gene="dcp" /locus_tag="SF1557" /note="peptidyl-dipeptidase Dcp; Region: PRK10280" /db_xref="CDD:182353" gene complement(1590503..1591021) /gene="ydeJ" /locus_tag="SF1558" /db_xref="GeneID:1024730" CDS complement(1590503..1591021) /gene="ydeJ" /locus_tag="SF1558" /note="Code: R; COG: COG1546" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707440.1" /db_xref="GeneID:1024730" /translation="MNINKDKIVQLADTDTIENLTSALSQRLIADQLRLTTAESCTGG KLASALCAAEDTPKFYGAGFVTFTDQAKMKILSVSQQSLERYSAVSEKVAAEMATGAI ERADADVSIAITGYGGPEGGEDGTPAGTVWFAWHIKGQNYTAVMHFAGDCETVLALAV RFALAQLLQLLL" misc_feature complement(1590536..1591006) /gene="ydeJ" /locus_tag="SF1558" /note="2-oxo-tetronate isomerase; Region: PRK03657" /db_xref="CDD:235149" mobile_element 1591523..1592784 /mobile_element_type="insertion sequence:IS600" gene 1591925..1592743 /locus_tag="SF1559" /db_xref="GeneID:1024737" CDS 1591925..1592743 /locus_tag="SF1559" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707441.1" /db_xref="GeneID:1024737" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <1591925..1592716 /locus_tag="SF1559" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1593211..1594329) /gene="ydeF" /locus_tag="SF1560" /db_xref="GeneID:1024761" CDS complement(1593211..1594329) /gene="ydeF" /locus_tag="SF1560" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707442.1" /db_xref="GeneID:1024761" /translation="MATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILA DKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFATVLKAWFADNL SSTSKTKIFSINYTMLNIGWTIGPPLGTLLVMQSINLPFWLAAICSAFPMLFIQIWVK RSEKIIATETGSVWSPKVLLQDKALLWFTCSGFLASFVSGAFASCISQYVMVIADGDF AEKVVAVVLPVNAAMVVTLQYSVGRRLNPANIRALMTAGTLCFVIGLVGFIFSGNNLL LWGMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASYFSAQSLGWLGAAINPLVSGVVL TSLPPSSLFVILALVIIAAWVLMLKGIRARPWGQPALC" misc_feature complement(1593214..1594326) /gene="ydeF" /locus_tag="SF1560" /note="efflux MFS transporter YdeE; Region: PRK10054" /db_xref="CDD:182213" gene 1594692..1595492 /gene="ydeD" /locus_tag="SF1561" /db_xref="GeneID:1024762" CDS 1594692..1595492 /gene="ydeD" /locus_tag="SF1561" /note="Code: GER; COG: COG0697" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707443.4" /db_xref="GeneID:1024762" /translation="MLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFAQFAFLF CAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLHGKQLAGIALAIFGVLVLIEDSL NGQHVAMLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVIWSALIPIIPFFVVS LILDGSASMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLV PVVGLASAALLLDERLTGLQFLGAVLIMTGLYINVFGLRWRKAVKVGS" misc_feature 1594692..1595483 /gene="ydeD" /locus_tag="SF1561" /note="O-acetylserine/cysteine exporter; Region: PRK11453" /db_xref="CDD:183142" gene complement(1595523..1595741) /gene="marB" /locus_tag="SF1562" /db_xref="GeneID:1024722" CDS complement(1595523..1595741) /gene="marB" /locus_tag="SF1562" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707444.1" /db_xref="GeneID:1024722" /translation="MKPLSSAIAAALILFSAQSVAEQTTQPVVTSCANVVVVPPSQEQ PPFDLNHMGTGSDKSDALGVPYYNQHAM" misc_feature complement(1595526..1595720) /gene="marB" /locus_tag="SF1562" /note="multiple antibiotic resistance protein MarB; Region: PRK10106" /db_xref="CDD:236651" gene complement(1595773..1596156) /gene="marA" /locus_tag="SF1563" /db_xref="GeneID:1026416" CDS complement(1595773..1596156) /gene="marA" /locus_tag="SF1563" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator MarA" /protein_id="NP_707445.2" /db_xref="GeneID:1026416" /translation="MSRRNTDAITIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQR MFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYGFESQQTLTRTFKNYFDV PPHKYRMTNMQGESRFLHPLNHYNS" misc_feature complement(1595776..1596156) /gene="marA" /locus_tag="SF1563" /note="MDR efflux pump AcrAB transcriptional activator MarA; Region: PRK11511" /db_xref="CDD:236920" gene complement(1596176..1596553) /gene="marR" /locus_tag="SF1564" /db_xref="GeneID:1024771" CDS complement(1596176..1596553) /gene="marR" /locus_tag="SF1564" /note="Code: K; COG: COG1846" /codon_start=1 /transl_table=11 /product="multiple antibiotic resistance protein" /protein_id="NP_707446.4" /db_xref="GeneID:1024771" /translation="MVNQKKDRLLNEYLSPMDITAAQFKVLCSIRCAACITPVELKKV LSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTSGAAICEQCHQLVGQDLHQ ELTKNLTADEVATLEHLLKKVLP" misc_feature complement(1596179..1596553) /gene="marR" /locus_tag="SF1564" /note="helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cl46859" /db_xref="CDD:481199" gene 1596822..1597487 /gene="ydeB" /locus_tag="SF1565" /db_xref="GeneID:1024775" CDS 1596822..1597487 /gene="ydeB" /locus_tag="SF1565" /note="Code: S; COG: COG2095" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707447.1" /db_xref="GeneID:1024775" /translation="MLDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS LMASVYVFAIMMVAYYAGQLVMDTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAIDSP EAKSKSEELEDEPSANIAFVPLAMPSTAGPGTIAMIISSASTVRQSSTFADWVLMVAP PLIFFLVAVILWGSLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGILEIIK TYH" misc_feature 1596822..1597484 /gene="ydeB" /locus_tag="SF1565" /note="MarC family NAAT transporter; Region: PRK10995" /db_xref="CDD:236814" gene complement(1597512..1598702) /locus_tag="SF1566" /pseudogene="unknown" /db_xref="GeneID:1024769" gene complement(1598852..1599967) /locus_tag="SF1567" /db_xref="GeneID:1024776" CDS complement(1598852..1599967) /locus_tag="SF1567" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707449.1" /db_xref="GeneID:1024776" /translation="MVTPVSICNYISLPDDFPARNIAPQVKEVLKDFIDALSTIICDE EWRTSLNTNSATKKIFNNLDNLSYIQRTSFRGNDTLYNEKVQFKLTYPVKNGRHKENI EFQVVINLSPIYLDNFRHDGEINIFCAPNPKPVTMGRVFQTGVERVLFLFMNDFIEQF PMINLGAPIKRAHTPHIEPLPPDHHTAADYLRQFDLLVLNFISRGNFVILPRLWNNSE VHRWFVNKDPNLITAILDITDSELKEDLLQSLMDSLGSNKHVQPEVCICFLSLLAEQE SPHFQDLFLFFANMLLHYHQFMNPNESDLNDVLMPASLSDDKIIKHMARRTLKLFVKN ETPPKVTHEDLVKNRPRSPVRPPIPATAKTPDLPERH" misc_feature complement(1598855..1599967) /locus_tag="SF1567" /note="putative protein YneK; Region: YneK; NF033404" /db_xref="CDD:468015" gene 1600263..1600982 /locus_tag="SF1568" /pseudo /db_xref="GeneID:1024756" misc_feature 1600263..1600982 /locus_tag="SF1568" /note="Similar to Escherichia coli K12 aldehyde dehydrogenase gi: 1787805 (471 aa). BLAST with identity of 98% in 240 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene 1601046..1601972 /gene="yneH" /locus_tag="SF1569" /db_xref="GeneID:1024764" CDS 1601046..1601972 /gene="yneH" /locus_tag="SF1569" /note="Code: E; COG: COG2066" /codon_start=1 /transl_table=11 /product="glutaminase" /protein_id="NP_707450.1" /db_xref="GeneID:1024764" /translation="MAVAMDNAILENILRQVRPLIGQGKVADYIPALATVDGSRLGIA ICTVDGQLFQAGDAQERFSIQSISKVLSLVVAMRHYSEEEIWQRVGKDPSGSPFNSLV QLEMEQGIPRNPFINTGALVVCDMLQGRLSAPRQRMLEVVRGLSGVSDISYDTVVARS EFEHSARNAAIAWLMKSFGNFHHDVTTVLQNYFHYCALKMSCVELARTFVFLANQGKA IHIDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI AVWSPELDDAGNSLAGIAVLEQLTKQLGRSVY" misc_feature 1601052..1601969 /gene="yneH" /locus_tag="SF1569" /note="glutaminase; Provisional; Region: PRK00971" /db_xref="CDD:234880" gene 1601972..1602331 /locus_tag="SF1570" /pseudogene="unknown" /db_xref="GeneID:1024768" gene 1602941..1603888 /locus_tag="SF1571" /db_xref="GeneID:1024765" CDS 1602941..1603888 /locus_tag="SF1571" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707452.2" /db_xref="GeneID:1024765" /translation="MLADWFSEQFSTGVLIVPCMLTLAIPGVLPRFKAEQMMPAIAFI VSVIASVVIGGAGSLAFPLPALIWCAVRYTPQVTCLLTFVTGAVEIVLVANSVIDISV GSPFSIPEMFSARLGIATMAICPIMVSFSVAAINLLMKQVALRADFDFLTQVYSRSGL YEALKSPSLKQTQHLTVMLLDIDYFKSINDNYGHECGDKVLSVFARHIQKIVGDKGLV ARMGGEEFAVAVPSVNPVDGLLMAEKIRKGVELQPFTWQQKTLYLTVSIGVGSGRASY RTLTDDFNKLMVEADTCLYRSKKDGRNRTSTMRYGEEVV" misc_feature 1603376..1603852 /locus_tag="SF1571" /note="Diguanylate cyclase, GGDEF domain; Region: GGDEF; pfam00990" /db_xref="CDD:425976" misc_feature order(1603481..1603483,1603610..1603612) /locus_tag="SF1571" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:143635" misc_feature order(1603496..1603498,1603505..1603510,1603520..1603522, 1603532..1603534,1603598..1603600,1603604..1603615) /locus_tag="SF1571" /note="active site" /db_xref="CDD:143635" misc_feature order(1603586..1603588,1603670..1603672) /locus_tag="SF1571" /note="I-site [active]" /db_xref="CDD:143635" gene 1604115..1605566 /gene="uxaB" /locus_tag="SF1572" /db_xref="GeneID:1024755" CDS 1604115..1605566 /gene="uxaB" /locus_tag="SF1572" /note="Code: G; COG: COG0246" /codon_start=1 /transl_table=11 /product="altronate oxidoreductase" /protein_id="NP_707453.1" /db_xref="GeneID:1024755" /translation="MKTLNRRDFPGAQYPERIIQFGEGNFLRAFVDWQIDLLNEHTDL NSGVVVVRPIETSFPPSLSTQDGLYTTIIRGLNEKGEAVSDARLIRSVNREISVYSEY DEFLKLAHNPEMRFVFSNTTEAGISYHAGDKFDDAPAVSYPAKLTRLLFERFSHFNGA LDKGWIIIPCELIDYNGDALRELVLRYAQEWALPEAFIQWLDQANSFCSTLVDRIVTG YPRDEVAKLEEELGYHDDFLDTAEHFYLFVIQGPKSLATELRLDKYPLNVLIVDDIKP YKERKVAILNGAHTALVPVAFQAGLDTVGEAMNDAEICAFVEKAIYEEIIPVLDLPRD ELESFASAVTGRFRNPYIKHQLLSIALNGMTKFRTRILPQLLAGQKANGTLPARLTFA LAALIAFYRGERNGETYPVQDDAHWLERYQQLWSQHRDRVIGTQELVAIVLAEKDHWE QDLTQVPGLVEQVANDLDAILEKGMREAVRPLC" misc_feature 1604115..1605530 /gene="uxaB" /locus_tag="SF1572" /note="tagaturonate reductase; Region: PRK03643" /db_xref="CDD:235147" mobile_element complement(1605695..1607043) /note="partial" /mobile_element_type="insertion sequence:IS1294" gene complement(1605863..1607061) /locus_tag="SF1573" /pseudogene="unknown" /db_xref="GeneID:1024743" gene complement(1607071..1607259) /locus_tag="SF1574" /db_xref="GeneID:1024786" CDS complement(1607071..1607259) /locus_tag="SF1574" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707455.1" /db_xref="GeneID:1024786" /translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI LERRGDTAALTRLQHTGG" gene 1607409..1608374 /locus_tag="SF1575" /db_xref="GeneID:1024742" CDS 1607409..1608374 /locus_tag="SF1575" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707456.1" /db_xref="GeneID:1024742" /translation="MIVITFNRATFPRLKITMIVRPQQHWLRRIFVWHGSVLSKISSR LLLNFLFSIAVIFMLPWYTHLGIKFTLAPFSILGVAIAIFLGFRNNAGYARYVEARKL WGQLMIASRSLLREVKTTLPDSASVREFARLQIAFAHCLRMTLRKQPQAEVLAHYLKT GDLQRVLASNSPANRILLIMGEWLAVQRRNGQLSDILFISLNDRLNDISAVLAGCERI AYTPIPFAYTLILHRTVYLFCIMLPFALVVDLHYMTPFISVLISYTFISLDCLAEELE DPFGTENNDLPLDAICNAIEIDLLQMNDEAEIPAKILPDRHYQLT" misc_feature 1607460..1608368 /locus_tag="SF1575" /note="Predicted membrane chloride channel, bestrophin family [Inorganic ion transport and metabolism]; Region: YneE; COG3781" /db_xref="CDD:442995" gene complement(1608378..1609136) /locus_tag="SF1576" /db_xref="GeneID:1024758" CDS complement(1608378..1609136) /locus_tag="SF1576" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="trans-aconitate 2-methyltransferase" /protein_id="NP_707457.1" /db_xref="GeneID:1024758" /translation="MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGN STALLHQRWPAARITGIDSSPAMIAEARSALPDCQFVEADIRNWQPEQALDLIFANAS LQWLPDHYELFPHLVSLLNPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLA GVHAYYDILSEAGCEVDIWRTTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFL TRYHQMLEEQYPLQENGQILLAFPRLFIVARRTE" misc_feature complement(1608381..1609136) /locus_tag="SF1576" /note="trans-aconitate 2-methyltransferase; Provisional; Region: PRK01683" /db_xref="CDD:234970" gene complement(1609176..1609466) /locus_tag="SF1577" /db_xref="GeneID:1024749" CDS complement(1609176..1609466) /locus_tag="SF1577" /note="Code: S; COG: COG1359" /codon_start=1 /transl_table=11 /product="autoinducer-2 (AI-2) modifying protein LsrG" /protein_id="NP_707458.1" /db_xref="GeneID:1024749" /translation="MHVTLVEINVHEDKVDEFIEVFRQNHLGSVQEEGNLRFDVLQDP EVNSRFYIYEAYKDEDTVAFHKTTPHYKTCVAKLESLMTGPRKKRLFNGLMP" misc_feature complement(1609179..1609466) /locus_tag="SF1577" /note="(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase; Region: PRK10486" /db_xref="CDD:182494" gene complement(1609490..1610260) /locus_tag="SF1578" /db_xref="GeneID:1023374" CDS complement(1609490..1610260) /locus_tag="SF1578" /note="Code: G; COG: COG1830" /codon_start=1 /transl_table=11 /product="autoinducer 2 aldolase" /protein_id="NP_707459.1" /db_xref="GeneID:1023374" /translation="MQSRLSWIFNPKTGKTVMLAFDHGYFQGPTIGLERIDINIAPLF EHADVLMCTRGILRSVVPPATNKPVVLRASGANSILAELSNEAVALSMDDAVRLNSCA VAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAA EMGAQIIKTYYVEKGFERIVAGCPVPIVIAGGKKLPERETLEMCWQAIDQGASGVDMG RNIFQSDHPVAMMKAVQAVVHHNETADRAYELYLSEKQ" misc_feature complement(1609493..1610260) /locus_tag="SF1578" /note="3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase; Region: PRK08227" /db_xref="CDD:181306" misc_feature complement(order(1609571..1609579,1609637..1609645, 1609706..1609708,1609715..1609717)) /locus_tag="SF1578" /note="putative active site; other site" /db_xref="CDD:188645" misc_feature complement(1609715..1609717) /locus_tag="SF1578" /note="catalytic residue [active]" /db_xref="CDD:188645" mobile_element complement(1610274..1611406) /note="partial" /mobile_element_type="insertion sequence:IS2" gene complement(1610285..1611124) /locus_tag="SF1579" /db_xref="GeneID:1024766" CDS complement(1610285..1611124) /locus_tag="SF1579" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_707460.3" /db_xref="GeneID:1024766" /translation="MSRAQLHVILRRTDDWMDGRRSRHTDDTDVLLRIHHVIGELPTY GYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKE SNQRWCSDGFEFCCDNGERLRVTFALDCCDREVLHWAVTTGGFNSETVQDVMLGAVER RFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTI KRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRC LEI" misc_feature complement(1610288..1611124) /locus_tag="SF1579" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(1611782..1612605) /gene="ydeV" /locus_tag="SF1581" /pseudo /db_xref="GeneID:1024803" misc_feature complement(1611782..1612605) /gene="ydeV" /locus_tag="SF1581" /note="Similar to Escherichia coli K12 kinase gi: 1787789 (531 aa). BLAST with identity of 98% in 274 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(1612684..1613637) /gene="ydeW" /locus_tag="SF1582" /db_xref="GeneID:1027794" CDS complement(1612684..1613637) /gene="ydeW" /locus_tag="SF1582" /note="Code: K; COG: COG2390" /codon_start=1 /transl_table=11 /product="transcriptional regulator LsrR" /protein_id="NP_707462.1" /db_xref="GeneID:1027794" /translation="MTINDSAISEQGMCEEEQVARIAWFYYHDGLTQSEISDRLGLTR LKVSRLLEKGHQSGIIRVQINSRFEGCLEYETQLRRQFSLQHVRVIPGLADADVGGRL GIGAAHMLMSLLQPQQMLAIGFGEATMNTLQRLSGFISSQQIRLVTLSGGVGSYMTGI GQLNAACSVNIIPAPLRASSADIARTLKNENCVKDVLLAAQAADVAIVGIGAVSQQDD ATIIRSGYISQGEQLMIGRKGAVGDILGYFFDAKGDVVTDIKIHNELIGLPLSALKTI PVRVGVAGGENKAEAIAAAMKGGYINALVTDQDTAAAILRS" misc_feature complement(1612687..1613634) /gene="ydeW" /locus_tag="SF1582" /note="transcriptional regulator LsrR; Provisional; Region: PRK15418" /db_xref="CDD:237962" gene 1613886..1615421 /locus_tag="SF1583" /db_xref="GeneID:1024806" CDS 1613886..1615421 /locus_tag="SF1583" /note="Code: G; COG: COG1129" /codon_start=1 /transl_table=11 /product="autoinducer 2 ABC transporter ATP-binding protein LsrA" /protein_id="NP_707463.1" /db_xref="GeneID:1024806" /translation="MQTSDTRALPLLCARSVYKQYSGVNVLKGIDFTLHQGEVHALLG GNGAGKSTLMKIIAGITPADSGTLEIGGNNYARLTPVHAHQLGIYLVPQEPLLFPSLS IKENILFGLAKKQLSMQKMKNLLAALGCQFDLHSLAGSLDVADRQMVEILRGLMRDSR ILILDEPTASLTPAETERLFSRLQELLATGVGIVFISHKLPEIRQIADRISVMRDGTI ALSGKTSELSTDDIIQAITPAVREKSLSASQKLWLELPGNRPQHAVGTPVLTLENLTG EGFRNVSLTLNAGEILGLAGLVGAGRTELAETLYGLRTLRGGRIMLNGKEINKLSTGE RLLRGLVYLPEDRQSSGLNLDASLAWNVCALTHNLRGFWAKTAKDNATLERYRRALNI KFNQPEQAARTLSGSNQQKILIAKCLEASPQALIVDEPTRGVDVSARNDIYQLLRSIA AQNVAVLFISSDMEEIELMADRVYVMHQGEITHSALTGRDINVETIMRVAFGDSQRQE ASC" misc_feature 1613886..1615418 /locus_tag="SF1583" /note="autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional; Region: PRK15439" /db_xref="CDD:185336" gene 1615415..1616443 /gene="ydeY" /locus_tag="SF1584" /db_xref="GeneID:1024751" CDS 1615415..1616443 /gene="ydeY" /locus_tag="SF1584" /note="Code: G; COG: COG1172" /codon_start=1 /transl_table=11 /product="autoinducer 2 ABC transporter permease LsrC" /protein_id="NP_707464.1" /db_xref="GeneID:1024751" /translation="MLKFIQNNREITALLAVVLLFVLPGFLDRQYLSVQTLTMVYSSA QILILLAMGATLVMLTRNIDVSVGSITGMCAVLLGMLLNAGYSLPVACVATLLLGLLA GFFNGALVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAELKQLSAPLLLGIS AIGWLTIILVAFMAWLLAKTAFGRSFYATGDNLQGARQLGVRTEAIRIVAFSLNGCMA ALAGIVFASQIGFILNQTGTGLEMKAIAACVLGGISLLGGSGAIIGAVLGAWFLTQID SVLVLLRIPAWWNDFIAGLVLLAVLVFDGRLRCALERNLRRQKYARFMTPPPSVKPAS SGKKREAA" misc_feature 1615415..1616440 /gene="ydeY" /locus_tag="SF1584" /note="autoinducer 2 ABC transporter permease LsrC; Provisional; Region: PRK15432" /db_xref="CDD:185330" misc_feature 1615994..1616050 /gene="ydeY" /locus_tag="SF1584" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119321" gene 1616443..1617435 /gene="ydeZ" /locus_tag="SF1585" /db_xref="GeneID:1024763" CDS 1616443..1617435 /gene="ydeZ" /locus_tag="SF1585" /note="Code: G; COG: COG1172" /codon_start=1 /transl_table=11 /product="autoinducer 2 import system permease LsrD" /protein_id="NP_707465.1" /db_xref="GeneID:1024763" /translation="MRIRYGWELALAALLVIEIVAFGAINPRMLDLNMLLFSTSDFIC IGIVALPLTMVIVSGGIDISFGSTIGLCAIALGVLFQSGVPMPLAILLTLLLGALCGL INAGLIIYTKVNPLVITLGTLYLFAGSALLLSGMAGATGYEGIGGFPMAFTDFANLDV LGLPVPLIIFLICLLVFWLWLHKTHAGRNVFLIGQSPRVALYSAIPVNRTLCALYAMT GLASAVAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIIGTAIAVLLV GYLQQGLQMAGVPNQVSSALSGALLIVVVVGRSVSLHRQQIKEWLARRANNPLP" misc_feature 1616443..1617432 /gene="ydeZ" /locus_tag="SF1585" /note="autoinducer 2 ABC transporter permease LsrD; Region: PRK15038" /db_xref="CDD:184998" misc_feature 1617034..1617090 /gene="ydeZ" /locus_tag="SF1585" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119321" gene 1617447..1618470 /locus_tag="SF1586" /pseudo /db_xref="GeneID:1024759" misc_feature 1617447..1618470 /locus_tag="SF1586" /note="Similar to Escherichia coli K12 LACI-type transcriptional regulator gi: 1787795 (341 aa). BLAST with identity of 99% in 341 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo mobile_element 1618594..1619934 /mobile_element_type="insertion sequence:IS2" gene 1618640..1619050 /locus_tag="SF1587" /db_xref="GeneID:1024788" CDS 1618640..1619050 /locus_tag="SF1587" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_707466.3" /db_xref="GeneID:1024788" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 1618685..1619047 /locus_tag="SF1587" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 1619099..1619923 /locus_tag="SF1588" /db_xref="GeneID:1024783" CDS 1619099..1619923 /locus_tag="SF1588" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_707467.3" /db_xref="GeneID:1024783" /translation="MHVILRRTDDWKDGRRSRHSDDTDVLLRIHHVIGELPTYGYRRV WALLRRQAELDGMPAINAKRIYRLMRQNALLLERKLAVPPSKRAHTGRVAVKESNQRW CSDGFEFRCDNGEKLRVTFALDCCDRKALHWAVTTGGFNSETVQDVMLGAVERRFGND LPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYI SIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI" misc_feature 1619099..1619920 /locus_tag="SF1588" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(1619973..1620785) /locus_tag="SF1589" /db_xref="GeneID:1024777" CDS complement(1619973..1620785) /locus_tag="SF1589" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707468.1" /db_xref="GeneID:1024777" /translation="MLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGY RKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNP DAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWW RNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRER IKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSEQMSPTEYENQYYQRLGSV" misc_feature complement(1620006..>1620782) /locus_tag="SF1589" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1620842..1621126) /locus_tag="SF1590" /db_xref="GeneID:1024797" CDS complement(1620842..1621126) /locus_tag="SF1590" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707469.1" /db_xref="GeneID:1024797" /translation="MPMSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYAW IKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDILKKAAAYFAKLSD" misc_feature complement(1620860..1621126) /locus_tag="SF1590" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(1621197..1622411) /gene="rspA" /locus_tag="SF1591" /db_xref="GeneID:1024798" CDS complement(1621197..1622411) /gene="rspA" /locus_tag="SF1591" /note="Code: H; COG: COG1441" /codon_start=1 /transl_table=11 /product="bifunctional D-altronate/D-mannonate dehydratase" /protein_id="NP_707470.1" /db_xref="GeneID:1024798" /translation="MKIVKAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELSVA SYLQDHLCPRLIGRDAHRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAAN MPLYQLLGGASREGVMVYCHTTGHSIDEALDDYARHQELGFKAIRVQCGIPGMKTTYG MSKGKGLAYEPATKGQWPEEQLWSTEKYLDFMPKLFDAVRNKFGFNEHLLHDMHHRLT PIEAARFGKSIEDYRMFWMEDPTPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLI EEQLIDYIRTTLTHAGGITGMRRIADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWV PNFGVQEYMGYSEQMLEVFPHNWTFDNGYMHPGDKPGLGIEFDEKLAAKYPYEPAYLP VARLEDGTLWNR" misc_feature complement(1621203..1622411) /gene="rspA" /locus_tag="SF1591" /note="D-galactonate dehydratase family protein; Region: PRK15072" /db_xref="CDD:237901" misc_feature complement(order(1621389..1621391,1621470..1621472, 1621551..1621553,1621620..1621622,1621698..1621700, 1621704..1621706,1621776..1621778,1621965..1621967, 1621971..1621973,1622052..1622054)) /gene="rspA" /locus_tag="SF1591" /note="putative active site pocket [active]" /db_xref="CDD:239438" misc_feature complement(order(1621620..1621622,1621698..1621700, 1621776..1621778)) /gene="rspA" /locus_tag="SF1591" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:239438" gene complement(1622617..1622943) /locus_tag="SF1592" /db_xref="GeneID:1024787" CDS complement(1622617..1622943) /locus_tag="SF1592" /note="Code: S; COG: COG1742" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707471.2" /db_xref="GeneID:1024787" /translation="MIKTTLLFFATALCEIIGCFLPWLWLKRNASIWLLLPAGISLAL FVWLLTLHPAASGRVYAAYGGVYVCTALMWLRVVDGVKLSLYDWTGALIALCGMLIIV AGWGRT" misc_feature complement(1622629..1622943) /locus_tag="SF1592" /note="Uncharacterized inner membrane protein YnfA, drug/metabolite transporter superfamily [General function prediction only]; Region: YnfA; COG1742" /db_xref="CDD:441348" gene 1623078..1623419 /locus_tag="SF1593" /db_xref="GeneID:1024782" CDS 1623078..1623419 /locus_tag="SF1593" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707472.1" /db_xref="GeneID:1024782" /translation="MKITLSKRIGLLAFLLPCALALSTTVHAETNKLVIESGDSAQSR QHAAMEKEQWNDTRNLRQKVNKRTEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRC LDRRTGRVITP" misc_feature 1623108..1623416 /locus_tag="SF1593" /note="DUF1283 family protein; Region: PRK13659" /db_xref="CDD:184216" gene 1623454..1624014 /gene="speG" /locus_tag="SF1594" /pseudo /db_xref="GeneID:1024789" misc_feature 1623454..1624014 /gene="speG" /locus_tag="SF1594" /note="Similar to Escherichia coli K12 spermidine N1-acetyltransferase gi: 1787867 (187 aa). BLAST with identity of 98% in 187 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(1624017..1624763) /gene="ynfC" /locus_tag="SF1595" /db_xref="GeneID:1024794" CDS complement(1624017..1624763) /gene="ynfC" /locus_tag="SF1595" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707473.4" /db_xref="GeneID:1024794" /translation="MIENHLYSLVTVVKYKLLPCLLAIFLTGCDRTEVTLSFTPEMAS FSNEFDFDPLRGPVKDFTQTLMDEQGEVTKRVSGTLSEEGCFDSLELLDLENNTVVAL VLDANYYRDAETLEKRVRLQGKCQLAELPSAGVSWETDDNGFVIKASSKQMQMEYRYD DQGYPLGKTTKSNDKTLSVSATPSTDPIKKLDYTAVTLLNNQRVGNVKQSCEYDSHAN PVDCQLIIVDEGVKPAVERVYTIKNTIDYY" misc_feature complement(1624020..1624727) /gene="ynfC" /locus_tag="SF1595" /note="YnfC family lipoprotein; Region: PRK02939" /db_xref="CDD:179506" gene 1624835..1625140 /locus_tag="SF1596" /db_xref="GeneID:1024792" CDS 1624835..1625140 /locus_tag="SF1596" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707474.2" /db_xref="GeneID:1024792" /translation="MKLSTCCAALLLALASPAVLAAPGSCERIQSDISQRIINNGVPE SSFTLSIVPNDQVDQPDSQVVGHCANDTHKILYNRTTSGNVSAPAQSTQDGAPAEPQ" misc_feature 1624910..1625071 /locus_tag="SF1596" /note="Protein of unknown function (DUF1161); Region: DUF1161; pfam06649" /db_xref="CDD:429051" gene 1625339..1626797 /locus_tag="SF1597" /pseudogene="unknown" /db_xref="GeneID:1026423" gene complement(1627483..1628472) /locus_tag="SF1599" /db_xref="GeneID:1024773" CDS complement(1627483..1628472) /locus_tag="SF1599" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707477.2" /db_xref="GeneID:1024773" /translation="MTTIKDAFQFGIEPVRITDTDNIQVNEGLPTNADPQVYALQLAK TVKAMLNGVLKDAQENIPFPVEVLPTRNSLPTPIIAHTLADRSVVVPVRGGKRPEVVT VPSGQEIVVEPIEQAILISEQTKLWDAKSSTGFTQGTLQQDAMNICENVVRTINARMV DVLESSKLLKTVELPVLTGSLTAKADAIMDALYENTESSFGSEVSDYGIIAHESQLKA LSRLAAKQGFSGEDAIVDMLGTDIAYYNGEDKGVFMLAKRFTALSFGCFRHDGENITV VLSRDGDSQSHDLEILGKVFVVAEAATTIKMGTGSATAVLPVVKRLKFTKTEA" gene complement(1628557..1629048) /locus_tag="SF1600" /db_xref="GeneID:1024770" CDS complement(1628557..1629048) /locus_tag="SF1600" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707478.1" /db_xref="GeneID:1024770" /translation="MMFNNNNWKLSVTDINLYENTVSLDGQPYPLSLAIKTLIPGYLS GLPSTSREAMELLEALAEAGVTIGNFFSNDLMTAYGRRQMNKRAEAERIAKEQRLQAE RMREENMTDAEWQKELQRREQVKAERRTYGESLRSATHSAGRSRAAIVADLESGGNWM DSL" misc_feature complement(<1628656..1628907) /locus_tag="SF1600" /note="Predicted Zn-dependent peptidase, M16 family [General function prediction only]; Region: PqqL; COG0612" /db_xref="CDD:440377" gene complement(1629369..1629869) /locus_tag="SF1601" /db_xref="GeneID:1023400" CDS complement(1629369..1629869) /locus_tag="SF1601" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707479.2" /db_xref="GeneID:1023400" /translation="MTSDNKQEYTIHIFGQDITSQDGLFRLDEIRRVGIQIGKVEDNR STEVARFMRTKAGRSLTNPENGFVKKINMGHLGTSWLADPVAAIEFGRWLDLGYGLAV TRAFVSMTSSATVQSAVASAEDIKPETKEFIQRHGTGLYIAGREVSQAEYSDYQAVTA GRCEWR" gene complement(1629859..1630374) /locus_tag="SF1602" /db_xref="GeneID:1024784" CDS complement(1629859..1630374) /locus_tag="SF1602" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707480.2" /db_xref="GeneID:1024784" /translation="MNTELPVTNRQFLIILLTNAESSVDCCRYNLDLLKLSRWYAQAE DWDYEKIREMYAEPIQSYLQTHTEEELKRGLQDIFYFNNPYTCEGDSEEMDWIASRSD ADLKHISNAMMQVESKWSRRLQVLTEDYENGTFDKLVPPDAERLQAKADQEQRFKSFA EALAGGASYDF" gene complement(1630805..1631173) /locus_tag="SF1603" /db_xref="GeneID:1024800" CDS complement(1630805..1631173) /locus_tag="SF1603" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707481.1" /db_xref="GeneID:1024800" /translation="MARPIATHDNTFTKAYLQQHCGDLLSFDGQGDLSGWLDDVLTGA GRLNESMASNTKPVSPYLILTQLLTHDTLTVSAVQESLSRKRVALGEPMVSTRYARYV YATVVSASKSVQYHASKAGS" gene complement(1631585..1632070) /locus_tag="SF1604" /db_xref="GeneID:1024795" CDS complement(1631585..1632070) /locus_tag="SF1604" /codon_start=1 /transl_table=11 /product="integrase" /protein_id="NP_707482.1" /db_xref="GeneID:1024795" /translation="MSVVTGARSAEVCHLTKRDIVTLDNGLVCIDINEDGDGKSVKNK HSVRLVPLTDGAYGFDLTSFLSWVDMQPDEGPLFGMTPSAYSSWFNSRVLTEALGDSQ DVSLHSLRHWLATRMKERGVNLVDAQGILGHSSQSITYDLYGKGHAVGRLADVLKTAL L" misc_feature complement(1631636..1632058) /locus_tag="SF1604" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain; Region: DNA_BRE_C; cl00213" /db_xref="CDD:469662" misc_feature complement(order(1631642..1631644,1631750..1631752, 1631801..1631803,1631807..1631809,1632044..1632049)) /locus_tag="SF1604" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:271175" misc_feature complement(order(1631642..1631644,1631672..1631674, 1631741..1631743,1631750..1631752,1632047..1632049)) /locus_tag="SF1604" /note="active site" /db_xref="CDD:271175" mobile_element complement(1632134..1633382) /mobile_element_type="insertion sequence:IS911" gene complement(1632142..1632981) /locus_tag="SF1605" /db_xref="GeneID:1024793" CDS complement(1632142..1632981) /locus_tag="SF1605" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_707483.1" /db_xref="GeneID:1024793" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature complement(1632151..1632960) /locus_tag="SF1605" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(1633008..1633346) /locus_tag="SF1606" /db_xref="GeneID:1025465" CDS complement(1633008..1633346) /locus_tag="SF1606" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_707484.1" /db_xref="GeneID:1025465" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature complement(1633038..1633307) /locus_tag="SF1606" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(1633380..1634417) /locus_tag="SF1608" /db_xref="GeneID:1024825" CDS complement(1633380..1634417) /locus_tag="SF1608" /codon_start=1 /transl_table=11 /product="integrase" /protein_id="NP_707485.1" /db_xref="GeneID:1024825" /translation="MTDINHDNTVYPSSSFSGSPYRYQQVYTSSPDTRLTQINLLSVA KPQLVRRANGRYTIRFRLKGQTTPFLSVSTRSTDRRVATMRQRELAATAKAFMLDRPE VSLQELTEHLRSMAEQFLTDASDDYWNGLEVATLVDEKSNLKELAATQALSLDQQKGI RLALEVLTAAQQRVDTGDTSGLIKLIDDNNLTDDSTIGDSTSILNNEQGDRPAVFTQE RQSSVVFSSLVSSLLAEKVQTLKTSSYKDLSSSLNTVSRFLPEDMDLMSRSGWLAVRD SMLASEVRPSTINKLLTKAKMCLDYGLMNGQLEGRNPIERMKLTKDIDSKRRAFTDEE LERLLVRVESE" misc_feature complement(<1633401..1633700) /locus_tag="SF1608" /note="Site-specific recombinase XerD [Replication, recombination and repair]; Region: XerD; COG4974" /db_xref="CDD:443999" gene 1634343..1635509 /locus_tag="SF1607" /db_xref="GeneID:1024785" CDS 1634343..1635509 /locus_tag="SF1607" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase subunit A" /protein_id="NP_707486.1" /db_xref="GeneID:1024785" /translation="MLIPIGRPRERTGWIYSVIMINVSHIRTLSSIESTTSSPSIRLA MESIWNYAGNTLVNQHSDINKTHEILQDESKCEMIVVIENFMTSSAKYADILLEDLMT VEQEDIIPNDYAGNMGYLIFLQPVTSEKFERKPIYWILSEVAKRLGPDVYQKFTEGRT QEQWLQHLYAKMLAKDPALPSYDELKKMGIYKRKDPNGHFVAYKAFRDDPEANPLKTP SGKIEIYSSKLAEIARTWELEKDEVISPLPVYASTFEGWDSPERRTFPLQLFGFHYKS RTHSTYGNIDVLKAACRQEVWINPIDAQKRGIANGDMVRVFNHRGEVRLPAKVTPRIL PGVSAMGQGAWHEPNMSGDKIDHGGCVNTLTTLRPSPLAKGNPQHTNLVEIEKI" misc_feature <1634484..1635506 /locus_tag="SF1607" /note="anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Region: dmsA_ynfE; TIGR02166" /db_xref="CDD:274006" gene 1635567..1637608 /locus_tag="SF1609" /pseudo /db_xref="GeneID:1024820" misc_feature 1635567..1637608 /locus_tag="SF1609" /note="'Similar to Escherichia coli K12 oxidoreductase, major subunit gi: 1787871 (809 aa). BLAST with identity of 98% in 681 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct.'" /pseudo gene 1637619..1638236 /locus_tag="SF1610" /db_xref="GeneID:1024815" CDS 1637619..1638236 /locus_tag="SF1610" /note="Code: C; COG: COG0437" /codon_start=1 /transl_table=11 /product="oxidoreductase, Fe-S subunit" /protein_id="NP_707487.1" /db_xref="GeneID:1024815" /translation="MTTQYGFFIDSSRCTGCKTCELACKDFKDLGPEVSFRRIYEYAG CDWQEDNGIWHQNVFAYYLSISCNHCDDPACTKVCPSGAMHKREDGFVVVDEDVCIGC RYCHMACPYGAPQYNAEKGHMTKCDGCYSRVAEGKQPICVESCPLRALEFGPIEELRQ KHGTLAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPEEV" misc_feature 1637628..1638107 /locus_tag="SF1610" /note="DMSO reductase, iron-sulfur subunit; Region: DMSO_dmsB; TIGR02951" /db_xref="CDD:131996" gene 1638238..1639092 /locus_tag="SF1611" /db_xref="GeneID:1024791" CDS 1638238..1639092 /locus_tag="SF1611" /note="Code: R; COG: COG3302" /codon_start=1 /transl_table=11 /product="DMSO reductase anchor subunit" /protein_id="NP_707488.2" /db_xref="GeneID:1024791" /translation="MGNGWHEWPLVIFTVLGQCVVGALIVSGIGWFAAKNDADRQHIV RGMFFLWLLMGIGFIASVMHLGSPLRAFNSLNRIGASGLSNEIAAGSIFFAVGGLWWL VAVIGKMPQALGKLWLLVSMALGVIFVWMMTCVYQIDTVPTWHNGYTTLAFFLTVLLS GPILAAAILRAARVTFNTTPFAIISVLALIACAEVIVLQGLSLASIHSSVQQASALVP DYASLQVWRVVLLCAGLGCWLCPLIRRREPHVAGLVLGLILILVGEMIGRVLFYGLHM TVGMAIAG" misc_feature 1638238..1639059 /locus_tag="SF1611" /note="DMSO reductase anchor subunit (DmsC); Region: DmsC; pfam04976" /db_xref="CDD:398575" gene 1639135..1639749 /locus_tag="SF1612" /db_xref="GeneID:1024778" CDS 1639135..1639749 /locus_tag="SF1612" /note="Code: R; COG: COG3381" /codon_start=1 /transl_table=11 /product="twin-argninine leader-binding protein DmsD" /protein_id="NP_707489.2" /db_xref="GeneID:1024778" /translation="MTHFSQQDNFSVAARVLGALFYYAPESAEAAPLVAVLTSDGWET QWPLPEASLAPLVTAFQTQCEETHAQAWQRLFVGPWALPSPPWGSVWLDRESVLFGDS TLALRQWMREKGIQFEMKQNEPEDHFGSLLLMAAWLAENGRQTECEELLAWHLFPWST RFLDVFIEKAEHPFYRALGELARLTLAQWQSQLLIPVAVKPLFR" misc_feature 1639135..1639746 /locus_tag="SF1612" /note="Tat proofreading chaperone DmsD; Region: PRK11621" /db_xref="CDD:236938" gene 1639884..1641200 /locus_tag="SF1613" /db_xref="GeneID:1024819" CDS 1639884..1641200 /locus_tag="SF1613" /note="Code: P; COG: COG0038" /codon_start=1 /transl_table=11 /product="chloride channel protein" /protein_id="NP_707490.3" /db_xref="GeneID:1024819" /translation="MFHCPFLLMHHLHIYPDLRTMFRRLLIATVVGILAVFAVAGFRH AMLLLEWLFLNNDSGSLVNAATNLSSWRRLLTPALGGLAAGLLLMGWQKFTQQRPHAP TDYMEALQTDGQFDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRFTP RQEWKLWIACGAAAGMAAAYRAPLAGSLFIAEVLFGTMMLASLGPVIISAIVAWLVSN LINHSDALLYNVQLSVTVQARDYALIISTGVLAGLCGPLLLTLMNACHRGFVSLKLAP PWQLALGGLIVGLLSLFTPAVWGNGYSTVQSFLTAPPLLMIIAGIFLCKLCAVLASSG SGAPGGVFTPTLFIGLAIGMLYGRSLGLWFPDGEEITLLLGLTGMATLLAATTHAPIM STLMICEMTGEYQLLPGLLIACVIASVISRTLHRDSIYRQHTAQHS" misc_feature 1639944..1641197 /locus_tag="SF1613" /note="putative voltage-gated ClC-type chloride channel ClcB; Provisional; Region: PRK01610" /db_xref="CDD:234963" misc_feature order(1640193..1640207,1640295..1640309,1640901..1640915) /locus_tag="SF1613" /note="Cl- selectivity filter [active]" /db_xref="CDD:238233" misc_feature order(1640196..1640198,1640202..1640204,1640301..1640306, 1640901..1640909) /locus_tag="SF1613" /note="Cl- binding residues [ion binding]; other site" /db_xref="CDD:238233" misc_feature 1640301..1640303 /locus_tag="SF1613" /note="pore gating glutamate residue [active]" /db_xref="CDD:238233" misc_feature order(1640433..1640435,1640460..1640462,1640505..1640507, 1640526..1640528,1641045..1641047,1641054..1641056, 1641078..1641080,1641102..1641104,1641123..1641128) /locus_tag="SF1613" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238233" gene complement(1641153..1641848) /gene="bioD" /locus_tag="SF1614" /db_xref="GeneID:1024805" CDS complement(1641153..1641848) /gene="bioD" /locus_tag="SF1614" /note="Code: H; COG: COG0132" /codon_start=1 /transl_table=11 /product="dithiobiotin synthetase" /protein_id="NP_707491.2" /db_xref="GeneID:1024805" /translation="MLKRFFITGTDTSVGKTVVSRALLQALASQGKRVAGYKPVAKGS KETPEGLRNKDALVLQSVSTIELPYEAVNPIALSEEESSVAHSCPINYTLISNGLANL TDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAIA NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLA MLRSVLAVDRVTV" misc_feature complement(1641195..1641842) /gene="bioD" /locus_tag="SF1614" /note="Dethiobiotin synthetase [Coenzyme transport and metabolism]; Region: BioD; COG0132" /db_xref="CDD:439902" gene complement(1641973..1643193) /gene="mlc" /locus_tag="SF1615" /db_xref="GeneID:1024810" CDS complement(1641973..1643193) /gene="mlc" /locus_tag="SF1615" /note="Code: K; COG: COG1940" /codon_start=1 /transl_table=11 /product="NagC-like transcriptional regulator" /protein_id="NP_707492.1" /db_xref="GeneID:1024810" /translation="MVAENQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP ASITKIVREMLEAHLVRELEIKEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALR DLSSKLVVEESQELALKDDLPLLDRIISHIDQFFIRHQKKLERLTSIAITLPGIIDTE NGIVHRMPFYEDVKEMPLGEALEQHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV VIDHNVGVGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSILE LAQLRLNQSMSSMLHGQPLTVDSLCQAALRGDLLAKDIIIGVGAHVGRILAIMVNLFN PQKILIGSPLSKAADILFPVISDSIRQQALPAYSQHISVESTQFSNQGTMAGAALVKD AMYNGSLLIRLLQG" misc_feature complement(1643014..1643136) /gene="mlc" /locus_tag="SF1615" /note="helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cl46859" /db_xref="CDD:481199" misc_feature complement(1641976..1642944) /gene="mlc" /locus_tag="SF1615" /note="ATPase-like domain of protein Mlc and similar proteins; Region: ASKHA_ATPase_ROK_Mlc; cd24074" /db_xref="CDD:466924" gene complement(1643328..1644230) /gene="ynfL" /locus_tag="SF1616" /db_xref="GeneID:1024818" CDS complement(1643328..1644230) /gene="ynfL" /locus_tag="SF1616" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_707493.1" /db_xref="GeneID:1024818" /translation="MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQALEQQ IGARLLARTNRSVLLTAAGKQFLADSRQILSMVDDAAARAERLHQGEAGELRIGFTSS APFIRAVSDTLSLFRRDYPDVHLQTREMNTREQIAPLIEGTLDMGLLRNTALPETLEH AVIVHEPLMAMIPYDHPLANNPSVTLAELAELAKEPFVFFDPHVGTGLYDDILGLMRR YHLTPVITQEVGEAMTIIGLVSAGLGVSILPASFKRVQLNEMRWVPIAEEDAVSEMWL VWPKHHEQSPAARNFRIHLLNALR" misc_feature complement(1644039..1644218) /gene="ynfL" /locus_tag="SF1616" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature complement(1643355..1643951) /gene="ynfL" /locus_tag="SF1616" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature complement(order(1643454..1643456,1643508..1643513, 1643517..1643522,1643538..1643543,1643598..1643603, 1643712..1643714,1643844..1643846,1643850..1643852, 1643856..1643858,1643880..1643882,1643889..1643894, 1643898..1643903,1643910..1643912,1643934..1643936)) /gene="ynfL" /locus_tag="SF1616" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature complement(order(1643607..1643609,1643628..1643633, 1643781..1643783,1643931..1643933)) /gene="ynfL" /locus_tag="SF1616" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene 1644337..1645590 /gene="ynfM" /locus_tag="SF1617" /pseudo /db_xref="GeneID:1024817" misc_feature 1644337..1645590 /gene="ynfM" /locus_tag="SF1617" /note="Similar to Escherichia coli K12 transport protein gi: 1787880 (418 aa). BLAST with identity of 98% in 418 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1645987..1646322 /gene="asr" /locus_tag="SF1618" /db_xref="GeneID:1024808" CDS 1645987..1646322 /gene="asr" /locus_tag="SF1618" /codon_start=1 /transl_table=11 /product="acid shock protein" /protein_id="NP_707494.3" /db_xref="GeneID:1024808" /translation="MKKQIEGMTMKKVLALVVAAAMGLSSAAFAAETATTPAPTATTT KAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAGKHGHQQP AKPAAQPAA" misc_feature 1646014..1646283 /gene="asr" /locus_tag="SF1618" /note="acid shock protein; Region: PRK03577" /db_xref="CDD:235132" gene 1646598..1647419 /locus_tag="SF1619" /db_xref="GeneID:1024802" CDS 1646598..1647419 /locus_tag="SF1619" /note="Code: E; COG: COG3591" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707495.1" /db_xref="GeneID:1024802" /translation="MRTTIAVVLGAISLTSAFVFADKPDVAKSANDEVSTLFFGHDDR VPVNDTTQSPWDAVGQLETASGNLCTATLIAPNLALTAGHCLLTPPKGKADKAVALRF VSNKGLWRYEIHDIEGRVDPTLGKRLKADGDGWIVPPAAAPWDFGLIVLRNPPSGITP LPLFEGDKAALTAALKSAGRKVTQAGYPEDHLDTLYSHQNCEVTGWAQTSVMSHQCDT LPGDSGSPLMLHTDDGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLDQLSQK" misc_feature 1646766..1647413 /locus_tag="SF1619" /note="V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones]; Region: eMpr; COG3591" /db_xref="CDD:442810" gene complement(1647458..1647787) /locus_tag="SF1620" /db_xref="GeneID:1024848" CDS complement(1647458..1647787) /locus_tag="SF1620" /note="Code: P; COG: COG2076" /codon_start=1 /transl_table=11 /product="multidrug efflux system protein MdtI" /protein_id="NP_707496.1" /db_xref="GeneID:1024848" /translation="MAQFEWVHAAWLALAIVLEIVANVFLKFSDGFRRKIFGLLSLAA VLAAFSALSQAVKGIDLSVVYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAG MIMVKLA" misc_feature complement(1647461..1647787) /locus_tag="SF1620" /note="multidrug/spermidine efflux SMR transporter subunit MdtI; Region: PRK10650" /db_xref="CDD:182618" gene complement(1647774..1648139) /locus_tag="SF1621" /db_xref="GeneID:1024804" CDS complement(1647774..1648139) /locus_tag="SF1621" /note="Code: P; COG: COG2076" /codon_start=1 /transl_table=11 /product="multidrug efflux system protein MdtJ" /protein_id="NP_707497.1" /db_xref="GeneID:1024804" /translation="MYIYWILLGLAIATEITGTLSMKWASVSEGNGGFILMLVMISLS YIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI KSGTRKARKPELEVNHGAV" misc_feature complement(1647777..1648136) /locus_tag="SF1621" /note="multidrug/spermidine efflux SMR transporter subunit MdtJ; Region: PRK10452" /db_xref="CDD:182471" gene 1648550..1649584 /gene="tqsA" /locus_tag="SF1622" /db_xref="GeneID:1023378" CDS 1648550..1649584 /gene="tqsA" /locus_tag="SF1622" /note="Code: R; COG: COG0628" /codon_start=1 /transl_table=11 /product="pheromone autoinducer 2 transporter" /protein_id="NP_707498.1" /db_xref="GeneID:1023378" /translation="MAKPIITLNGLKIVIMLGMLVIILCGIRFAAEIIVPFILALFIA VILNPLVQHMVRWRVPRVLAVSILMTIIVMAMVLLLAYLGSALNELTRTLPQYRNSIM TPLQALEPLLQRVGIDVSVDQLAHYIDPNAAMTLLTNLLTQLSNAMSSIFLLLLTVLF MLLEVPQLPGKFQQMMARPVEGMAAIQRAIDSVSHYLVLKTAISIITGLVAWAMLAAL DVRFAFVWGLLAFALNYIPNIGSVLAAIPPIAQVLVFNGFYEALLVLAGYLLINLVFG NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTAGGQSI AVLLSDLNKE" misc_feature 1648550..1649581 /gene="tqsA" /locus_tag="SF1622" /note="pheromone autoinducer 2 transporter; Reviewed; Region: tqsA; PRK12287" /db_xref="CDD:183405" gene complement(1649609..1650997) /gene="pntB" /locus_tag="SF1623" /db_xref="GeneID:1026430" CDS complement(1649609..1650997) /gene="pntB" /locus_tag="SF1623" /note="Code: C; COG: COG1282" /codon_start=1 /transl_table=11 /product="pyridine nucleotide transhydrogenase" /protein_id="NP_707499.1" /db_xref="GeneID:1026430" /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA LIATIFGPDTGNVGWILLAMVIGGAIGIRLAKKVEMTEMPELVAILHSFVGLAAVLVG FNSYLHHDAGMAPILVNIHLTEVFLGIFIGAVTFTGSVVAFGKLCGKISSKPLMLPNR HKMNLAALVVSFLLLIVFVRTDSVGLQVLALLIMTAIALVFGWHLVASIGGADMPVVV SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG TDGSSTGDDQEVGEHREITAEETAELLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND TVNPAAQDDPKSPIAGMPVLEVWKAQNVIVFKRSMNTGYAGVQNPLFFKENTHMLFGD AKASVDAILKAL" misc_feature complement(1649612..1650997) /gene="pntB" /locus_tag="SF1623" /note="Re/Si-specific NAD(P)(+) transhydrogenase subunit beta; Region: pntB; PRK09444" /db_xref="CDD:236520" gene complement(1651008..1652555) /gene="pntA" /locus_tag="SF1624" /db_xref="GeneID:1024826" CDS complement(1651008..1652555) /gene="pntA" /locus_tag="SF1624" /note="Code: C; COG: COG3288" /codon_start=1 /transl_table=11 /product="NAD(P) transhydrogenase subunit alpha" /protein_id="NP_707500.2" /db_xref="GeneID:1024826" /translation="MEGNIMRIGIPRERLTNETRVAATPKTVEQLLKLGFTVAVESGA GQLASFDDKAFVQAGAEIVEGNSVWQSEIILKVNAPLDDEIALLNPGTTLVSFIWPAQ NPELMQKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTG QITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLE LDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREM VDSMKAGSVIVDLAAQNGGNCEYIVPGEIFSTENGVKVIGYTDLPGRLPTQSSQLYGT NLVNLLKLLCKEKDGNITVDFDDVVIRGVTVIRAGEITWPAPPIQVSAQPQAAQKAAP EVKTEEKCACSPWRKYALMALAIILFGWLSSVAPKEFLGHFTVFALACVVGYYVVWNV SHALHTPLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRM LKMFRKN" misc_feature complement(1651014..1652540) /gene="pntA" /locus_tag="SF1624" /note="Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha; Region: pntA; PRK09424" /db_xref="CDD:236507" gene 1653064..1654008 /locus_tag="SF1625" /db_xref="GeneID:1024827" CDS 1653064..1654008 /locus_tag="SF1625" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707501.1" /db_xref="GeneID:1024827" /translation="MKLKNTLLASALLSATAFSVNAATELTPEQAAAVKPFDRVVVTG RFNAIGEAVKAVSRRADKEGAASFYVVDTSDFGNSGNWRVVADLYKADAEKAEETSNR VINGVVELPKDQAVLIEPFDTVTVQGFYRSQPEVNDAITKAAKAKGAYSFYIVRQIDA NQGGNQRITAFIYKKDAKKRIVQSPDVIPADSEAGRAALAAGGEAAKKVEIPGVATTA SPSSEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSIKFSGNYGNMTE VSYQVAKRAAKKGAKYYHITRQWQKRGNNLTVSADLYK" misc_feature 1653064..1654005 /locus_tag="SF1625" /note="DUF1471 family protein YdgH; Region: ydgH_STM1478; NF040471" /db_xref="CDD:439699" gene 1654194..1655576 /locus_tag="SF1626" /db_xref="GeneID:1024796" CDS 1654194..1655576 /locus_tag="SF1626" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="arginine/ornithine antiporter" /protein_id="NP_707502.1" /db_xref="GeneID:1024796" /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWG ITGAGILLLAFAMLILTRIRPELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY LVIVFSALSFFTDTPELRLFGDGNTWQSIVGASALLWIVHFLILRGVQTAASINLVAT LAKLLPLGLFVVLAMMMFKLDTFKLDFTGLALGVPVWEQVKNTMLITLWVFIGVEGAV VVSARARNKRDVGKATLLAVLSALGVYLLVTLLSLGVVARPELAEIRNPSMAGLMVEM MGPWGEIIIAAGLIVSVCGAYLSWTIMAAEVPFLAATHKAFPRIFARQNAQAAPSASL WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHKAVGVG ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARKTHTHDNVLNRQEMVLIGMLLIA SVPATWMLVG" misc_feature 1654200..1655573 /locus_tag="SF1626" /note="transporter, basic amino acid/polyamine antiporter (APA) family; Region: 2A0302; TIGR00905" /db_xref="CDD:129983" gene 1655613..1656335 /gene="ydgB" /locus_tag="SF1627" /db_xref="GeneID:1024813" CDS 1655613..1656335 /gene="ydgB" /locus_tag="SF1627" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="dihydromonapterin reductase" /protein_id="NP_707503.1" /db_xref="GeneID:1024813" /translation="MGKTQPLPILITGGGRRIGLALAWHFINQKQPVIVSYRTHYPAI DGLINAGAQCIQADFSTNDGVMAFADEVLKTTHGLRAILHNASAWIAEKPGAPLADVL ACMMQIHVNTPYLLNHALERLLRGHGHAASDIIHFTDYVVERGSDKHVAYAASKAALD NMTRSFARKLAPEVKVNSIAPSLILFNEHDDAEYRQQALNKSLMKTAPGEKEVIDLVD YLLTSCFVTGRSFPLDGGRHLR" misc_feature 1655625..1656332 /gene="ydgB" /locus_tag="SF1627" /note="dihydromonapterin reductase; Provisional; Region: PRK06483" /db_xref="CDD:180586" misc_feature order(1655649..1655651,1655658..1655666,1655718..1655732, 1655781..1655789,1655865..1655876,1655922..1655924, 1655934..1655936,1656021..1656029,1656066..1656068, 1656078..1656080,1656153..1656167) /gene="ydgB" /locus_tag="SF1627" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187615" misc_feature order(1655661..1655663,1655871..1655873,1655877..1655879, 1655883..1655885,1656027..1656029,1656057..1656059, 1656066..1656068,1656156..1656161,1656168..1656173) /gene="ydgB" /locus_tag="SF1627" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:187615" misc_feature order(1655937..1655939,1656027..1656029,1656066..1656068, 1656078..1656080) /gene="ydgB" /locus_tag="SF1627" /note="active site" /db_xref="CDD:187615" gene complement(1656332..1656667) /gene="ydgC" /locus_tag="SF1628" /db_xref="GeneID:1024842" CDS complement(1656332..1656667) /gene="ydgC" /locus_tag="SF1628" /note="Code: R; COG: COG3136" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707504.1" /db_xref="GeneID:1024842" /translation="MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHY IVASERGIEALRATIIFSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWV LIICWIKLH" misc_feature complement(1656335..1656667) /gene="ydgC" /locus_tag="SF1628" /note="Dual-topology membrane protein YdgC, GlpM family [Function unknown]; Region: GlpM; COG3136" /db_xref="CDD:442370" gene 1656796..1657539 /gene="rstA" /locus_tag="SF1629" /db_xref="GeneID:1024809" CDS 1656796..1657539 /gene="rstA" /locus_tag="SF1629" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator RstA" /protein_id="NP_707505.2" /db_xref="GeneID:1024809" /translation="MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRE NPDLVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKT TPPAVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEI SLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAA EPYRIKTVRNKGYLFAPHAWDSDNKQSDD" misc_feature 1656796..1657515 /gene="rstA" /locus_tag="SF1629" /note="DNA-binding transcriptional regulator RstA; Provisional; Region: PRK10701" /db_xref="CDD:236738" gene 1657764..1659083 /locus_tag="SF1631" /db_xref="GeneID:1024816" CDS 1657764..1659083 /locus_tag="SF1631" /note="Code: R; COG: COG1823" /codon_start=1 /transl_table=11 /product="L-cystine transporter TcyP" /protein_id="NP_707507.2" /db_xref="GeneID:1024816" /translation="MLFLICSWGIFKTDQKSESLSKSVFIAIFLGAIIGISLHFIPET SSETVIEWYNIAGNGYVNLLKLVAVPLIFISILSAINKLENSAGIGKMSLTIVACMLC LVMIAGLVGLAIASAIGLDASAFGHMQSSLTSDDVSKTAAVSLPRLITSLIPTNLFLD LTGARSVSVIGIVIFTILAGIALLKVKKDAPAEGEKLSAGINAIQIWVMKMVRIVIAL TPYGVMALMAKVFSTYQLSQFTNLLGFIVACYLAVFVMFIVHSGILLLIGKNPVNYYK TVWQVLTFAFVSRSSAASIPLAISALEKLGVPNTIANIAASFGSSMGQNGCAGIYPAV MVAMIAPTMGIDPFSLQFLATLLPAIALGSIGVAGVGSGGTFAALIVLSTLNFPVALV VIFIAIEPIVDMARTALNVNGSIMSGVISARLLKDRETKEQQSVTLN" misc_feature 1657767..1659044 /locus_tag="SF1631" /note="L-cystine transporter TcyP, sodium:dicarboxylate symporter family [Amino acid transport and metabolism]; Region: TcyP; cl46791" /db_xref="CDD:481131" gene 1659262..1660563 /gene="rstB" /locus_tag="SF1632" /db_xref="GeneID:1024811" CDS 1659262..1660563 /gene="rstB" /locus_tag="SF1632" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="sensor protein RstB" /protein_id="NP_707508.2" /db_xref="GeneID:1024811" /translation="MKKLFIQFYLLLFVCFLVMSLLVGLVYKFTAERAGKQSLDDLMN SSLYLMRSELREIPPHDWGKTLKEMDLNLSFDLRVEPLSKYHLDDISMHRLRGGEIVA LDDQYTFLQRIPRSHYVLAVGPVPYLYYLHQMRLLDIALIAFIAISLAFPVFIWMRPH WQDMLKLEAAAQRFGDGHLNERIHFDEGSSFERLGIAFNQMADNINALIASKKQLIDG IAHELRTPLVRLRYRLEMSDNLSAAESQALNRDISQLEALIEELLTYARLDRPQNELH LSEPDLPLWLSTHLADIQAVTPDKTVRIKTLMQGHYAALDMRLMERVLDNLLNNALRY CHSTVETSLLLSGNRATLIVEDDGPGIAPENREHIFEPFVRLDPSRDRSTGGCGLGLA IVHSIALTMGGTVNCDISELGGARFSFSWPLWHNIPQFTSA" misc_feature 1659262..1660560 /gene="rstB" /locus_tag="SF1632" /note="sensor protein RstB; Provisional; Region: PRK10604" /db_xref="CDD:236724" gene 1660639..1661568 /gene="tus" /locus_tag="SF1633" /db_xref="GeneID:1024823" CDS 1660639..1661568 /gene="tus" /locus_tag="SF1633" /codon_start=1 /transl_table=11 /product="DNA replication terminus site-binding protein" /protein_id="NP_707509.2" /db_xref="GeneID:1024823" /translation="MARYDLVDRLNTTFRQMEQELATFAAHLEQHKLLVARVFSLPEV KKEDEHNPLNRIEVKQHLGNDAQSLALRHFRHLFIQQQSENRSSKAAVRLPGVLCYQV DNLSQAALVSHIQHINKLKTTFEHIVTVESELPTAARFEWVHRHLPGLITLNAYRTLT VLHDPATLRFGWANKHIIKNLHRDEVLAQLEKSLKSPRSVAPWTREEWQRKLEREYQD IAALPQNAKLKIKRPVKVQPIARVWYKGDQKQVQHACPTPLIALINRDNGAGVPDVGE LLNYDADNVQHRYKPQAQPLRLIIPRLHLYVAD" misc_feature 1660639..1661565 /gene="tus" /locus_tag="SF1633" /note="DNA replication terminus site-binding protein; Provisional; Region: PRK02951" /db_xref="CDD:235090" gene complement(1661565..1662968) /gene="fumC" /locus_tag="SF1634" /db_xref="GeneID:1027791" CDS complement(1661565..1662968) /gene="fumC" /locus_tag="SF1634" /note="Code: C; COG: COG0114" /codon_start=1 /transl_table=11 /product="fumarate hydratase" /protein_id="NP_707510.1" /db_xref="GeneID:1027791" /translation="MNTVRSEKDSMGAIDVPADKLWGAQTQRSLEHFRISTEKMPTSL IHALALTKRAAAKVNEDLDLLSEEKASAIRQAADEVLAGQHDDEFPLAIWQTGSGTQS NMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQL IPQLKTLTQTLSEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYS LPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQ AHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALT MLCCQVMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIE PNRERINQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKAAALALGYLSEAEF DSWVRPEQMVGSMKAGR" misc_feature complement(1661577..1662968) /gene="fumC" /locus_tag="SF1634" /note="fumarate hydratase; Reviewed; Region: fumC; PRK00485" /db_xref="CDD:234779" misc_feature complement(order(1661976..1661978,1661991..1661993, 1661997..1661999,1662405..1662407,1662546..1662554, 1662573..1662584,1662591..1662593,1662669..1662671, 1662675..1662677)) /gene="fumC" /locus_tag="SF1634" /note="active site" /db_xref="CDD:176465" misc_feature complement(order(1661739..1661741,1661898..1661906, 1661913..1661915,1661937..1661939,1662087..1662092, 1662099..1662104,1662108..1662113,1662120..1662125, 1662132..1662134,1662141..1662146,1662153..1662155, 1662159..1662164,1662171..1662173,1662180..1662185, 1662273..1662275,1662327..1662329,1662339..1662341, 1662351..1662353,1662369..1662374,1662390..1662392, 1662402..1662413)) /gene="fumC" /locus_tag="SF1634" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176465" gene complement(1663111..1664757) /gene="fumA" /locus_tag="SF1635" /db_xref="GeneID:1024833" CDS complement(1663111..1664757) /gene="fumA" /locus_tag="SF1635" /note="Code: C; COG: COG1951" /codon_start=1 /transl_table=11 /product="fumarate hydratase FumA" /protein_id="NP_707511.1" /db_xref="GeneID:1024833" /translation="MSNKPFHYQSPFPLKKNDTEYYLLTSEHVSVSEFEGQEILKVAP EALTLLARQAFHDASFMLRPAHQQQVADILRDPEASENDKYVALQFLRNSDIAAKGVL PTCQDTGTAIIVGKKGQRVWTGGGDEAALARGVYNTYIEDNLRYSQNAPLDMYKEVNT GTNLPAQIDLYAVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVEKMRT LGTAACPPYHIAFVIGGTSAETNLKTVKLASAKYYDELPTEGNEHGQAFRDVELEKEL LIEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRQGIW IEKLEHNPGKYIPEELRKAGEGEAVRVDLNRPMKEILAQLSQYPVSTRLSLNGTIIVG RDIAHAKLKERMDNGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ LQAQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKSLECVEYPEL GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQLTQCTRCVK" misc_feature complement(1663147..1664754) /gene="fumA" /locus_tag="SF1635" /note="fumarate hydratase; Provisional; Region: PRK15389" /db_xref="CDD:237955" gene 1664956..1666131 /gene="manA" /locus_tag="SF1636" /db_xref="GeneID:1024799" CDS 1664956..1666131 /gene="manA" /locus_tag="SF1636" /note="Code: G; COG: COG1482" /codon_start=1 /transl_table=11 /product="mannose-6-phosphate isomerase" /protein_id="NP_707512.2" /db_xref="GeneID:1024799" /translation="MQKLINSVQNYAWGSKTALTELYGMENPSSQPMAELWMGAHPKS SSRVQNAAGDIVSLRDVIESDKSTLLGEAVAKRFGELPFLFKVLCAAQPLSIQVHPNK HNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSEIVSLLQP VAGAHPAIAHFLQQPHAERLSELFANLLNMQGEEKSRALAILKSALDSQQGEPWQTIR LISEFYPEDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG LTPKYIDIPELVANVKFEAKPANQLLTQPVKQGAELDFPIPVDDFAFSLHDLSDKETT ISQQSAAILFCVEGDATLWKGSQQLQLKPGESAFIAANESPVTVKGHGRLARVYNKL" misc_feature 1664956..1666122 /gene="manA" /locus_tag="SF1636" /note="mannose-6-phosphate isomerase; Provisional; Region: PRK15131" /db_xref="CDD:185085" misc_feature order(1664992..1664994,1665058..1665060,1665064..1665066, 1665211..1665213,1665235..1665240,1665244..1665246, 1665250..1665252,1665349..1665351,1665355..1665357, 1665361..1665363,1665718..1665720,1665724..1665726, 1665745..1665747,1665751..1665753,1665763..1665765, 1665775..1665777) /gene="manA" /locus_tag="SF1636" /note="active site" /db_xref="CDD:380414" gene 1666232..1667740 /gene="ydgA" /locus_tag="SF1637" /db_xref="GeneID:1024801" CDS 1666232..1667740 /gene="ydgA" /locus_tag="SF1637" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707513.1" /db_xref="GeneID:1024801" /translation="MNKSLVAVGVIVALGVVWTGGAWYTGKKIETHLEDMVAQANAQL KLTAPESNLEVSYQNYHRGVFSSQLQLLVKPIAGKENPWIKSGQSVIFNESVDHGPFP LAQLKKLNLIPSMASIQTTLVNNEVSKPLFDMAKGETPFEINSRIGYSGDSSSDISLN PLNYEQKDEKVAFSGGEFQLNADRDGKAISLSGEAQSGRIDAVNEYNQKVQLTFNNLK TDGSSTLGSFGERVGNQKLSLEKMTISVEGKELALLEGMEISGKSDLVNDGKTINSQL DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYNAQTQALLAQPEIANNPELY QEKVTEAFFSALPLMLKGDPVITIAPLSWKNSQGESALNLSLFLKDPATTKEAPQTLA QEVDRSVKSLDAKLTIPVDMATELMTQVAKLEGYQEDQAKKLAKQQVEGASAMGQMFR LTTLQDNTITTSLQYANGQITLNGQKMSLEDFVGMFAMPALNVPAVPAIPQQ" misc_feature 1666232..1667674 /gene="ydgA" /locus_tag="SF1637" /note="Uncharacterized conserved protein YdgA, DUF945 family [Function unknown]; Region: YdgA; COG5339" /db_xref="CDD:444123" gene complement(1667966..1669232) /locus_tag="SF1638" /pseudogene="unknown" /db_xref="GeneID:1024839" gene complement(1669271..1670305) /gene="uidB" /locus_tag="SF1639" /pseudo /db_xref="GeneID:1024812" misc_feature complement(1669271..1670305) /gene="uidB" /locus_tag="SF1639" /note="Similar to Escherichia coli K12 glucuronide permease gi: 1787902 (458 aa). BLAST with identity of 98% in 344 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(1670302..1672005) /gene="uidA" /locus_tag="SF1640" /db_xref="GeneID:1024814" CDS complement(1670302..1672005) /gene="uidA" /locus_tag="SF1640" /note="Code: G; COG: COG3250" /codon_start=1 /transl_table=11 /product="beta-D-glucuronidase" /protein_id="NP_707515.1" /db_xref="GeneID:1024814" /translation="MLRPVETPTREIKKLDGLWAFSLDRENCGIDQRWCESALQESRA IAVPGSFNDQFADADIRNYVGNVWYQREVFIPKGWAGQRIVLRFDAVTHYGKVWVNNQ EVMEHQGGYTPFEADVTPYVIAGKSVRITVCVNNELNWQTIPPGMVITDENGKKKQSY FHDFFNYAGIHRSVMLYTTPNTWVDDITVVTHVAQDCNHASVDWQVVANGDISVELRD ADQQVVATGQGTSGTLQVVNPHLWQPGEGYLYELCVTAKSQTECDIYPLRVGIRSVAV KGEQFLINHKPFYFTGFGRHEDADLRGKGFDNVLMVHDHALMDWIGANSYRTSHYPYA EEMLDWADEHGIVVIDETAAVGFNLSLGIGFEAGNKPKELYSEEAGNGETQQAHLQAI KELIARDKNHPSVVMWSIANEPDTRPQGAREYFAPLAEATRKLDPTRPITCVNVMFCD AHTDTISDLFDVLCLNRYYGWYVQSGDLETAEKVLEKELLAWQEKLHQPIIITEYGVD TLAGLHSMYTDMWSEEYQCAWLDMYHRVFDRVSAVVGEQVWNFADFATSQGILRVGGN N" misc_feature complement(1670305..1672005) /gene="uidA" /locus_tag="SF1640" /note="beta-D-glucuronidase; Provisional; Region: PRK10150" /db_xref="CDD:236657" gene complement(1672393..1672983) /gene="uidR" /locus_tag="SF1641" /db_xref="GeneID:1024844" CDS complement(1672393..1672983) /gene="uidR" /locus_tag="SF1641" /note="Code: K; COG: COG1309" /codon_start=1 /transl_table=11 /product="uid operon repressor" /protein_id="NP_707516.1" /db_xref="GeneID:1024844" /translation="MMDNMQTEAQPTRTRILNAAREIFSENGFHSASMKAICKSCAIS PGTLYHHFISKEALIQAIILQDQERALARFREPIEGIHFVDYMVESIVSLTHEAFGQR ALVVEIMAEGMRNPQVAAMLKNKHMTITEFVAQRMRDAQQKGEISPDINTAMTSRLLL DLTYGVLADIEAEDLAREASFAQGLRAMIGGILTAS" misc_feature complement(1672522..1672968) /gene="uidR" /locus_tag="SF1641" /note="DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:440920" mobile_element complement(1673373..1674140) /mobile_element_type="insertion sequence:IS1" gene complement(1673388..1673783) /gene="insB" /locus_tag="SF1642" /db_xref="GeneID:1024834" CDS complement(1673388..1673783) /gene="insB" /locus_tag="SF1642" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707517.1" /db_xref="GeneID:1024834" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1673391..1673780) /gene="insB" /locus_tag="SF1642" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1673810..1674085) /gene="insA" /locus_tag="SF1643" /db_xref="GeneID:1024843" CDS complement(1673810..1674085) /gene="insA" /locus_tag="SF1643" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707518.1" /db_xref="GeneID:1024843" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1673813..1674064) /gene="insA" /locus_tag="SF1643" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(1674136..1674756) /locus_tag="SF1644" /db_xref="GeneID:1024838" CDS complement(1674136..1674756) /locus_tag="SF1644" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="2-deoxy-D-gluconate 3-dehydrogenase" /protein_id="NP_707519.1" /db_xref="GeneID:1024838" /translation="MFNSDNLRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDIN ADAANHVVDEIQQLDGQAFAWRCDITSEQELSALADFAVSNLGKVDILVNNAGGGGPK PFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYA SSKAAASHLVRNMAFDLGEKNIRVNSIAPGAILTDALKSVITPEIG" misc_feature complement(1674142..1674756) /locus_tag="SF1644" /note="A large family of proteins that share a Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The NADB domain is found in numerous dehydrogenases of metabolic pathways such as glycolysis, and many other redox enzymes. NAD binding involves numerous...; Region: Rossmann-fold NAD(P)(+)-binding proteins; cl21454" /db_xref="CDD:473865" misc_feature complement(order(1674181..1674192,1674268..1674270, 1674280..1674282,1674319..1674327,1674466..1674474, 1674625..1674633,1674688..1674690,1674694..1674699, 1674703..1674705)) /locus_tag="SF1644" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(1674268..1674270,1674280..1674282, 1674319..1674321,1674403..1674405)) /locus_tag="SF1644" /note="active site" /db_xref="CDD:187535" gene complement(1674868..1675896) /gene="malI" /locus_tag="SF1646" /db_xref="GeneID:1024855" CDS complement(1674868..1675896) /gene="malI" /locus_tag="SF1646" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor MalI" /protein_id="NP_707520.1" /db_xref="GeneID:1024855" /translation="MATAKKITIHDVALAAGVSVSTVSLVLNGKGRISTATGERVNAA IEELGFVRNRQASALRGGQSGVIGLIVRDLSAPFYAELTAGLTEALEAQGRMVFLLHG GKDGEQLAQRFSLLLNQGVDGVVIAGAAGSSDDLRRMAEEKAIPVIFASRASYLDDVD TVRPDNMQAAQLLTEHLIRNGHQRIAWLGGQSSSLTRAERVGGYCATLLKFGLPFHSD WVLECTSSQKQAAEAITALLRHNPTISAVVCYNETIAMGAWFGLLKAGRQSGESGVDR YFEQQVSLAAFTDATPTTLDDIPVTWASTPARELGITLADRMMQKITHEETHSRNLII PARLIAAK" misc_feature complement(1674871..1675896) /gene="malI" /locus_tag="SF1646" /note="DNA-binding transcriptional repressor MalI; Provisional; Region: PRK10014" /db_xref="CDD:182193" gene 1676071..1677663 /gene="malX" /locus_tag="SF1645" /db_xref="GeneID:1026438" CDS 1676071..1677663 /gene="malX" /locus_tag="SF1645" /note="Code: G; COG: COG1263" /codon_start=1 /transl_table=11 /product="bifunctional PTS system maltose and glucose-specific transporter subunits IICB" /protein_id="NP_707521.2" /db_xref="GeneID:1026438" /translation="MTAKTAPKVTLWEFFQQLGKTFMLPVALLSFCGIMLGIGSSLSS HDVITLIPVLGNPVLQAIFTWMSKIGSFAFSFLPVMFCIAIPLGLARENKGVAAFAGF VGYAVMNLAVNFWLTNKGILPTTDAAVLKANNIQSILGIQSIDTGILGAVIAGIIVWM LHERFHNIRLPDALAFFGGTRFVPIISSLVMGLVGLVILLVWPIFAMGISGLGHMINS AGDFGPMLFGTGERLLLPFGLHHILVALIRFTDAGGTQEVCGQTVSGALTIFQAQLSC PTTHGFSESVTRFLSQGKMPAFLGGLPGAALAMYHCARPENRHKIKGLLISGLIACVV GGTTEPLEFLFLFVAPVLYVIHALLTGLGFTVMSVLGVTIGNTDGNIIDFVVFGILHG LSTKWYMVPVVAAIWFVVYYVIFRFAITRFNLKTPGRDSEVASSIEKAVAGAPGKSGY NVPAILEALGGADNIVSLDNCITRLRLSVEDMSLVNVQALKDNRAIGVVQLNQHNLQV VIGPQVQSVKDEMAGLMHTVQA" misc_feature 1676071..1677660 /gene="malX" /locus_tag="SF1645" /note="PTS maltose transporter subunit IICB; Region: PRK10110" /db_xref="CDD:182245" gene 1677673..1678845 /gene="malY" /locus_tag="SF1647" /db_xref="GeneID:1024837" CDS 1677673..1678845 /gene="malY" /locus_tag="SF1647" /note="Code: E; COG: COG1168" /codon_start=1 /transl_table=11 /product="cystathionine beta-lyase" /protein_id="NP_707522.1" /db_xref="GeneID:1024837" /translation="MFDFSKVVDRHGTWCTQWDYVADRFGTADLLPFTISDMDFATAP CIIEALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDTQTVVYGPSVIYMVSE LIRQWSETGEGVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK PECKIMLLCNPQNPTGKVWTCDELEIMADLCERHDVRVISDEIHMDMVWGEQPHIPWS NVARGDWALLTSGSKSFNIPALTGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTA HIAAYQQGAPWLDALRVYLKDNLTYISDKMNAAFPELNWQIPQSTYLAWLDLRPLNID DNALQKALIEQEKVAIMPGYTYGEEGRGFVRLNAGCPRSKLEKGVAGLINAIRAVR" misc_feature 1677673..1678830 /gene="malY" /locus_tag="SF1647" /note="Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism, General function prediction only]; Region: MalY; COG1168" /db_xref="CDD:440782" gene 1678949..1679950 /gene="add" /locus_tag="SF1648" /db_xref="GeneID:1024851" CDS 1678949..1679950 /gene="add" /locus_tag="SF1648" /note="Code: F; COG: COG1816" /codon_start=1 /transl_table=11 /product="adenosine deaminase" /protein_id="NP_707523.1" /db_xref="GeneID:1024851" /translation="MIDTTLPLTDIHRHLDGNIRPQTILELGRQYNISLPAQSLETLI PHVQVIANEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLRYVELRFSPG YMAMAHKLPVAGVVEAVIDGVREGCRTFGVQAKLIGIMSRTFGEAACQQELEAFLAHR DQITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAER IGHGVKAIEDRALMDFLAEQQIGIESCLTSNIQTSTVAELAAHPLKTFLEHGIRASIN TDDPGVQGVDIIHEYTVAAPAAGLSREQIRQAQINGLEMAFLSAEEKRALREKVAAK" misc_feature 1678967..1679947 /gene="add" /locus_tag="SF1648" /note="Adenosine deaminase; Region: A_deaminase; pfam00962" /db_xref="CDD:425964" misc_feature order(1678982..1678984,1678988..1678990,1679537..1679539, 1679546..1679548,1679609..1679611,1679780..1679785) /gene="add" /locus_tag="SF1648" /note="active site" /db_xref="CDD:238645" misc_feature order(1678988..1678990,1678994..1678996,1679456..1679458, 1679546..1679548,1679780..1679785) /gene="add" /locus_tag="SF1648" /note="purine riboside binding site [chemical binding]; other site" /db_xref="CDD:238645" gene complement(1679986..1681065) /locus_tag="SF1649" /db_xref="GeneID:1024845" CDS complement(1679986..1681065) /locus_tag="SF1649" /note="Code: R; COG: COG0673" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707524.3" /db_xref="GeneID:1024845" /translation="MSNSHHTSMRGNDMSDNIRVGLIGYGYASKTFHAPLIAGTPGLE LAVISSSDETKVKADWPTVTVVSEPKHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGK HVVVDKPFTVTLSQARELDALAKSLGRVLSVFHNRRWDSDFLTLKGLLAEGVLGEVAY FESHFDRFRPQVRDRWREQGGPGSGIWYDLAPHLLDQAITLFGLPVSMTVDLAQLRPG AQSTDYFHAILSYPQRRVILHGTMLAAAESARYIVHGSRGSYVKYGLDPQEERLKNGE RLPQEDWGYDMRDGVLTRVEGEERVEETLLTVPGNYPAYYAAIRDALNGDGENPVPAS QAIQVMELIELGIESAKHRATLCLA" misc_feature complement(1679989..1681026) /locus_tag="SF1649" /note="putative oxidoreductase; Provisional; Region: PRK11579" /db_xref="CDD:183212" gene 1681194..1681394 /locus_tag="SF1649a" /db_xref="GeneID:16608329" CDS 1681194..1681394 /locus_tag="SF1649a" /codon_start=1 /transl_table=11 /product="beta-lactam resistance family protein" /protein_id="YP_008439252.1" /db_xref="GeneID:16608329" /translation="MLELLLLSNIYPLKLMDQSREMWAVMNRLIELTGWIVLVVSVIL LGVASHIDNYQPPEQSASVQHK" misc_feature 1681272..1681391 /locus_tag="SF1649a" /note="division septum protein Blr; Region: small_Blr; NF033231" /db_xref="CDD:380226" gene 1681667..1681882 /locus_tag="SF1650" /db_xref="GeneID:1023375" CDS 1681667..1681882 /locus_tag="SF1650" /codon_start=1 /transl_table=11 /product="oriC-binding nucleoid-associated protein" /protein_id="NP_707525.1" /db_xref="GeneID:1023375" /translation="MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAAD HRRAELVSGGRLFDLGQVPKSVWHYVQ" misc_feature 1681667..1681879 /locus_tag="SF1650" /note="transcription modulator YdgT; Region: PRK10391" /db_xref="CDD:182426" gene 1681968..1682408 /locus_tag="SF1651" /db_xref="GeneID:1024835" CDS 1681968..1682408 /locus_tag="SF1651" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707526.2" /db_xref="GeneID:1024835" /translation="MTTTTPQRIGGWLLGPLAWLLVALLSTTLALLLYTAALSSPQTF QTLGGQALTTQILWGVSFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLISVLLAV KAFAFSPVEVGIAVRQLLFTLLATALIVPYFKRSSRVKATFVNP" misc_feature 1681983..1682399 /locus_tag="SF1651" /note="Protein of unknown function (DUF2569); Region: DUF2569; pfam10754" /db_xref="CDD:431473" gene 1682485..1683066 /locus_tag="SF1652" /db_xref="GeneID:1024850" CDS 1682485..1683066 /locus_tag="SF1652" /note="Code: C; COG: COG2209" /codon_start=1 /transl_table=11 /product="electron transport complex protein RsxA" /protein_id="NP_707527.1" /db_xref="GeneID:1024850" /translation="MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA TTFVMTLTSICAWLIDTWILIPLNLIYLRTLAFILVIAVVVQFTEMVVRKTSPVLYRL LGIFLPLITTNCAVLGVALLNINLGHNFLQSALYGFSAAVGFSLVMVLFAAIRERLAV ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL" misc_feature 1682485..1683063 /locus_tag="SF1652" /note="electron transport complex protein RsxA; Provisional; Region: PRK05151" /db_xref="CDD:235352" gene 1683066..1683644 /locus_tag="SF1653" /db_xref="GeneID:1024854" CDS 1683066..1683644 /locus_tag="SF1653" /note="Code: C; COG: COG2878" /codon_start=1 /transl_table=11 /product="electron transport complex protein RnfB" /protein_id="NP_707528.1" /db_xref="GeneID:1024854" /translation="MNAIWIAVAAVSLLGLAFGAILGYASRRFAVEDDPVVEKIDEIL PQSQCGQCGYPGCRPYAEAISCNGEKINRCAPGGEAVMLKIAELLNVEPQPLDGEAQE LTPARMVAVIDENNCIGCTKCIQACPVDAIVGATRVMHTVMSDLCTGCNLCVDPCPTH CISLQPVAETPDSWKWDLNTIPVRIIPVEHHA" misc_feature 1683066..1683641 /locus_tag="SF1653" /note="electron transport complex protein RnfB; Provisional; Region: PRK05113" /db_xref="CDD:235347" gene 1683637..1685859 /locus_tag="SF1654" /db_xref="GeneID:1024831" CDS 1683637..1685859 /locus_tag="SF1654" /note="Code: C; COG: COG1726" /codon_start=1 /transl_table=11 /product="electron transport complex protein RnfC" /protein_id="NP_707529.1" /db_xref="GeneID:1024831" /translation="MLKLFSAFRKNKIWDFNGGIHPPEMKTQTNGTPLRQVLLAQHFV IPLKQHIGAEGELCVSVGDKVLRGQPLTRGRGKMLPVHAPTSGTVTAIAPHSTAHPSA LAELSVIIDADGEDCWIPRDGWVDYRSRSREELIERIHQFGVAGLGGAGFPTGVKLQG GGDKIETLIINAAECEPYITADDRLMQDCAAQVVEGIRILAHILQPREILIGIEDNKP QAISMLRAVLADSNDISLRVIPTKYPSGGAKQLTYILTGKQVPHGGRSSDIGVLMQNV GTAYAVKRAVIDGEPITERVVTLTGEAIARPGNVWARLGTPVRHLLNDAGFCPSADQM VIMGGPLMGFTLPWLDVPVVKITNCLLAPSANELGEPQEEQSCIRCSACADACPVDLL PQQLYWFSKGQQHDKATTHNIADCIECGACAWVCPSNIPLVQYFRQEKAEIAAIRQEE KRAAEAKARFEARQARLEREKATRLERHKSAAVQPAAKDKDAIAAALARVKEKQAQAT QPIVIKAGERPDNSAIIAEREARKAQARAKQAELEQTNDAATVAEPRKTAVEAAIARS KARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVE AAIARAKARKLEQQQANAEPEEQVDPRKAAVEAAIARAKARKLEQQQANAEPEEQVDP RKAAVEAAIARAKARKLEQQQANAEPEEQVDPRKAAVAAAIARVQAKKAAQQKVVNED " misc_feature 1683655..1685688 /locus_tag="SF1654" /note="electron transport complex protein RnfC; Provisional; Region: PRK05035" /db_xref="CDD:235334" gene 1685860..1686918 /gene="rnfD" /locus_tag="SF1655" /db_xref="GeneID:1024858" CDS 1685860..1686918 /gene="rnfD" /locus_tag="SF1655" /note="Code: C; COG: COG1805" /codon_start=1 /transl_table=11 /product="electron transport complex protein RnfD" /protein_id="NP_707530.1" /db_xref="GeneID:1024858" /translation="MVFRIASSPYTHNQRQTSRIMLLVLLAAVPGIAAQLRFFGWGTL VQILLASVSALLAEALVLKLRKQSVAATLKDNSALLTGLLLAVSIPPLAPWWMVVLGT VFAVIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPHEIAVNIPGFIDAIQ VIFSGHTASGGDMNTLRLGIDGISQATPLDTFKTSVRAGHSVEQIMQYPIYSGILAGA GWQWVNLAWLAGGVWLLWQKAIRWHIPLSFLVTLALCATLGWLFSPETLAAPQIHLLS GATMLGAFFILTDPVTASTTNRGRLMFGALAGLLVWLIRSFGGYPDGVAFAVLLANIT VPLIDYYTRPRVYGHRKG" misc_feature 1685863..1686912 /gene="rnfD" /locus_tag="SF1655" /note="electron transport complex protein RnfD; Reviewed; Region: rnfD; PRK00816" /db_xref="CDD:234844" gene 1686922..1687542 /locus_tag="SF1656" /db_xref="GeneID:1024821" CDS 1686922..1687542 /locus_tag="SF1656" /note="Code: C; COG: COG2869" /codon_start=1 /transl_table=11 /product="electron transport complex protein RnfG" /protein_id="NP_707531.1" /db_xref="GeneID:1024821" /translation="MLKTIRKHGITLALFAAGSTGLTAAINQMTKTTIAEQASLQQKT LFDQVLPAERYNNALAQSCYLVTAPELGKGEHRVYIAKQDDKPVAAVLEATAPDGYSG AIQLLVGADFNGTVLGTRVTEHHETPGLGDKIELRLSDWLTHFAGKKISGADDAHWAV KKDGGDFDQFTGATITPRAVVNAVKRAGLYAQTLPAQLSQLPACGE" misc_feature 1686934..1687539 /locus_tag="SF1656" /note="electron transport complex protein RnfG; Validated; Region: PRK01908" /db_xref="CDD:179350" gene 1687546..1688241 /gene="ydgQ" /locus_tag="SF1657" /db_xref="GeneID:1024879" CDS 1687546..1688241 /gene="ydgQ" /locus_tag="SF1657" /note="Code: C; COG: COG1347" /codon_start=1 /transl_table=11 /product="electron transport complex protein RsxE" /protein_id="NP_707532.1" /db_xref="GeneID:1024879" /translation="MSEIKDVIVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA TTLVLTLTNLTISTLRHWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI PLIVTNCIVVGRAEAFAAKKGPALSALDGFSIGTGATCAMFVLGSLREIIGNGTLFDG ADALLGSWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAGKYLIDERMKKRRAEAA AERALPNGETGNV" misc_feature 1687546..1688181 /gene="ydgQ" /locus_tag="SF1657" /note="electron transport complex RsxE subunit; Provisional; Region: PRK12405" /db_xref="CDD:237091" gene 1688241..1688876 /gene="nth" /locus_tag="SF1658" /db_xref="GeneID:1024830" CDS 1688241..1688876 /gene="nth" /locus_tag="SF1658" /note="Code: L; COG: COG0177" /codon_start=1 /transl_table=11 /product="endonuclease III" /protein_id="NP_707533.1" /db_xref="GeneID:1024830" /translation="MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATD ISVNKATAKLYPVANTPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNG EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE EKLLKVVPAEFKVDCHHWLILHGRYTCIARKPRCGSCIIEDLCEYKEKVDI" misc_feature 1688241..1688873 /gene="nth" /locus_tag="SF1658" /note="endonuclease III; Provisional; Region: PRK10702" /db_xref="CDD:182661" gene 1689487..1690989 /gene="tppB" /locus_tag="SF1659" /db_xref="GeneID:1024841" CDS 1689487..1690989 /gene="tppB" /locus_tag="SF1659" /note="Code: E; COG: COG3104" /codon_start=1 /transl_table=11 /product="tripeptide transporter permease" /protein_id="NP_707534.1" /db_xref="GeneID:1024841" /translation="MSTANQKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGY ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYEKNDPRLDGAFTMYYMSVN IGSFFSMIATPWLAAKYGWSVAFALSVVGLLITIVNFAFCQRWVKQYGSKPDFEPVNY RNLLLTIIGVVALIAVATWLLHNQEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMI VAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGLAVEPEQYQALNPFWIIIGSP ILAAIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLGAKFASDAGIVSVSWLVASYGLQ SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANLIGGYVAGMMAVPDNVTDP LMSLEVYGRVFLQIGVATAVIAVLMLLTAPKLHRMTQDDAADKAAKATVA" misc_feature 1689487..1690947 /gene="tppB" /locus_tag="SF1659" /note="dipeptide/tripeptide permease DtpA; Region: tppB; PRK09584" /db_xref="CDD:181969" misc_feature order(1689586..1689588,1689598..1689600,1689874..1689876, 1689952..1689954,1689961..1689966,1689973..1689975, 1690360..1690362,1690459..1690464,1690471..1690473, 1690672..1690674) /gene="tppB" /locus_tag="SF1659" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340904" gene 1691095..1691700 /gene="gst" /locus_tag="SF1660" /db_xref="GeneID:1024836" CDS 1691095..1691700 /gene="gst" /locus_tag="SF1660" /note="Code: O; COG: COG0625" /codon_start=1 /transl_table=11 /product="glutathionine S-transferase" /protein_id="NP_707535.1" /db_xref="GeneID:1024836" /translation="MKLFYKPGACSLASHITLRESGKDFTLVSVDLMKKRLENGDDYF SVNHKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVNSISRYKTIEWLNYIA TELHKGFTPLFRPDTPEEYKPTVRAQLDKKLQYVNEALKDEHWICGQRFTIADAYLFT VLRWAYAVKLNLEGLEHIAAFMQRMAERPEVQDALSAEGLK" misc_feature 1691095..1691697 /gene="gst" /locus_tag="SF1660" /note="glutathionine S-transferase; Provisional; Region: PRK10542" /db_xref="CDD:182533" gene complement(1691744..1692607) /gene="pdxY" /locus_tag="SF1661" /db_xref="GeneID:1024828" CDS complement(1691744..1692607) /gene="pdxY" /locus_tag="SF1661" /note="Code: H; COG: COG2240" /codon_start=1 /transl_table=11 /product="pyridoxamine kinase" /protein_id="NP_707536.1" /db_xref="GeneID:1024828" /translation="MMKNILAIQSHVVYGHAGNSAAEFPMRRLGANVWPLNTVQFSNH TQYGKWTGCVMPPSHLTEIVQGIAAIDKLHTCDAVLSGYLGSAEQGEHILGIVRQVKA ANPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRHGLPASDIIAPNLVELEILCEHAVNN VEEAVLAARELIEQGPQIVLVKHLARAGYSRDRFEMLLVTADEVWHISRPLVDFGMRQ PVGVGDVTSGLLLVKLLQGATLQEALEHVTAAVYEIMVTTKAMQEYELQVVAAQDRIA KPEHYFSATKL" misc_feature complement(1691747..1692604) /gene="pdxY" /locus_tag="SF1661" /note="pyridoxal kinase PdxY; Region: PRK05756" /db_xref="CDD:235592" misc_feature complement(order(1692398..1692400,1692419..1692424, 1692443..1692445,1692449..1692454,1692479..1692481, 1692488..1692490,1692497..1692514,1692527..1692529, 1692536..1692538,1692548..1692550,1692560..1692562, 1692566..1692571,1692575..1692577,1692596..1692598)) /gene="pdxY" /locus_tag="SF1661" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238578" misc_feature complement(order(1691936..1691938,1691945..1691950, 1692353..1692355,1692359..1692361,1692458..1692460, 1692473..1692478,1692485..1692487,1692554..1692559, 1692578..1692580)) /gene="pdxY" /locus_tag="SF1661" /note="pyridoxal binding site [chemical binding]; other site" /db_xref="CDD:238578" misc_feature complement(order(1691843..1691845,1691855..1691857, 1691930..1691932,1691936..1691944,1691951..1691953, 1691972..1691977,1691981..1691983,1692026..1692028, 1692059..1692064,1692161..1692163,1692170..1692172, 1692176..1692178,1692257..1692259,1692272..1692274)) /gene="pdxY" /locus_tag="SF1661" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238578" gene complement(1692714..1693988) /gene="tyrS" /locus_tag="SF1662" /db_xref="GeneID:1024866" CDS complement(1692714..1693988) /gene="tyrS" /locus_tag="SF1662" /note="Code: J; COG: COG0162" /codon_start=1 /transl_table=11 /product="tyrosyl-tRNA synthetase" /protein_id="NP_707537.2" /db_xref="GeneID:1024866" /translation="MASSNLIKQLQERGLVAQVTDEEALAERLAQGPIALYCGFDPTA DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVD KIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQR LNREDEGMSITEFSYNLQQGYDWTCLNTHYYVELQIGGSDQRWNITSEIDLTRRLHQN HVLGLPDPLITNGDGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT FMSIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLQAAKRITECLFSGSLSA LSEADFEQLAQDGVPMVEMEKGADLMQALVDSELQPSRGQARKTIASNAITINGEKQS DPEYFFKEEDRLFGRFTLLRRGKKNYCLICWK" misc_feature complement(1692717..1693979) /gene="tyrS" /locus_tag="SF1662" /note="Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: TyrS; COG0162" /db_xref="CDD:439932" gene complement(1694117..1694773) /gene="pdxH" /locus_tag="SF1663" /db_xref="GeneID:1024832" CDS complement(1694117..1694773) /gene="pdxH" /locus_tag="SF1663" /note="Code: H; COG: COG0259" /codon_start=1 /transl_table=11 /product="pyridoxamine 5'-phosphate oxidase" /protein_id="NP_707538.1" /db_xref="GeneID:1024832" /translation="MSDNDELQQIAHLRREYTKGGLRRRDLPADPLTLFERWLSQACE AKLADPTAMVVATVDEHGQPYQRIVLLKHYDEKGMVFYTNLGSRKAHQIENNPRVSLL FPWHTLERQVMVIGKAERLSTLEVMKYFHSRPRDSQIGAWVSKQSSRISARGILESKF LELKQKFQQGEVPLPSFWGGFRVSLEQIEFWQGGEHRLHDRFLYQRENDAWKIDRLAP " misc_feature complement(1694120..1694704) /gene="pdxH" /locus_tag="SF1663" /note="pyridoxal 5'-phosphate synthase; Region: PRK05679" /db_xref="CDD:235555" gene complement(1694832..1695080) /gene="ydhA" /locus_tag="SF1664" /db_xref="GeneID:1024824" CDS complement(1694832..1695080) /gene="ydhA" /locus_tag="SF1664" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707539.1" /db_xref="GeneID:1024824" /translation="MQTDTLEYQCDEKPLTVKLNNPRQEVSFVYDNQLLHLKQGLSAS GARYSDGIYVFWSKGEEATVYKRDRIVLNNCQLQNPQR" misc_feature complement(1694835..>1695080) /gene="ydhA" /locus_tag="SF1664" /note="C-type lysozyme inhibitor; Region: PRK11372; cl01604" /db_xref="CDD:470265" mobile_element complement(1695091..1696421) /mobile_element_type="insertion sequence:IS2" gene complement(1695102..1696007) /locus_tag="SF1665" /db_xref="GeneID:1024869" CDS complement(1695102..1696007) /locus_tag="SF1665" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_707540.1" /db_xref="GeneID:1024869" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALFRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(1695105..1696007) /locus_tag="SF1665" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(1695965..1696375) /locus_tag="SF1666" /db_xref="GeneID:1024829" CDS complement(1695965..1696375) /locus_tag="SF1666" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_707541.1" /db_xref="GeneID:1024829" /translation="MIVLIPVFRLVIGEQIIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(1695968..1696330) /locus_tag="SF1666" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene complement(1696595..1697704) /gene="anmK" /locus_tag="SF1667" /db_xref="GeneID:1024861" CDS complement(1696595..1697704) /gene="anmK" /locus_tag="SF1667" /note="Code: S; COG: COG2377" /codon_start=1 /transl_table=11 /product="anhydro-N-acetylmuramic acid kinase" /protein_id="NP_707542.1" /db_xref="GeneID:1024861" /translation="MKSGRFIGVMSGTSLDGVDVVLATIDEHRVAQLASLSWPIPVSL KQAVLDICQGQQLTLSQFGQLDTQLGRLFADAVNALLKEQNLQARDIVAIGCHGQTVW HEPTGVAPHTLQIGDNNQIVARTGITVVGDFRRRDIALGGQGAPLVPAFHHALLAHPT ERRMVLNIGGIANLSLLIPGQLVGGYDTGPGNMLMDAWIWRQAGKPYDKDAEWARAGK VILPLLQNMLSDPYFSQPAPKSTGREYFNYGWLERHLRHFPGVDPRDVQATLAELTAV TISEQVLLSGGCERLMVCGGGSRNPLLMARLAVLLLGTEVTTTDAVGISGDDMEALAF AWLAWRTLAGLPGNLPSVTGASQETVLGAIFPANS" misc_feature complement(1696604..1697695) /gene="anmK" /locus_tag="SF1667" /note="Anhydro-N-acetylmuramic acid kinase; Region: AnmK; pfam03702" /db_xref="CDD:397660" gene 1697978..1698445 /gene="slyB" /locus_tag="SF1668" /db_xref="GeneID:1024859" CDS 1697978..1698445 /gene="slyB" /locus_tag="SF1668" /note="Code: M; COG: COG3133" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707543.1" /db_xref="GeneID:1024859" /translation="MIKRVLVVSMVGLSLVGCVNNDTLSGDVYTASEAKQVQNVSYGT IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTVGGGTGRSLATAAGAVAGGVAGQGV QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSPGQRVVLASNGSQVTVSPR" misc_feature 1697978..1698442 /gene="slyB" /locus_tag="SF1668" /note="Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis]; Region: SlyB; COG3133" /db_xref="CDD:442367" gene complement(1698492..1698932) /gene="slyA" /locus_tag="SF1669" /db_xref="GeneID:1024872" CDS complement(1698492..1698932) /gene="slyA" /locus_tag="SF1669" /note="Code: K; COG: COG1846" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_707544.3" /db_xref="GeneID:1024872" /translation="MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQ LPPDQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLI SEMEAVINKTRAEILHGISAEELEQLITLIAKLEHNIIELQAKG" misc_feature complement(1698495..1698926) /gene="slyA" /locus_tag="SF1669" /note="transcriptional regulator SlyA; Provisional; Region: PRK03573" /db_xref="CDD:179596" gene 1699127..1699363 /locus_tag="SF1670" /db_xref="GeneID:1024877" CDS 1699127..1699363 /locus_tag="SF1670" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707545.1" /db_xref="GeneID:1024877" /translation="MKFMLNATGLPLQDLVFGASVYFPPFFKAFAFGFVIWLVVHRLL RGWIYAGDIWHPLLMDLSLFAICVCLALAILIAW" misc_feature 1699172..1699336 /locus_tag="SF1670" /note="Protein of unknown function (DUF1656); Region: DUF1656; pfam07869" /db_xref="CDD:429704" gene 1699357..1700223 /locus_tag="SF1671" /db_xref="GeneID:1024873" CDS 1699357..1700223 /locus_tag="SF1671" /note="Code: Q; COG: COG1566" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707546.1" /db_xref="GeneID:1024873" /translation="MVTMSIKTIKYFSTIIVAIVAVLAGWWLWNYYMQSPWTRDGKIR AEQVSITPQVSGRIVELNIKDNQLVNAGELLLTIDKTPFQIAELNAQAQLAKAQSDLA KANNEANRRRHLSQNFIFAEELDTANLNVKAMQASVNAAQATLKQTQWQLAQTEIRAP VSGWVTNLTTRIGDYADTGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYSD NKTLQGHVSSIGRAIYDQSVESDSSLIPDVKPNVPWVRLAQLVPVRFALDKVPGDVTL VSGTTCSIAVGQ" misc_feature 1699357..1700217 /locus_tag="SF1671" /note="p-hydroxybenzoic acid efflux pump subunit AaeA; Region: PRK10559" /db_xref="CDD:182548" gene 1700223..1702231 /locus_tag="SF1672" /pseudo /db_xref="GeneID:1026749" misc_feature 1700223..1702231 /locus_tag="SF1672" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787933 (671 aa). BLAST with identity of 98% in 670 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1702236..1702772) /gene="sodC" /locus_tag="SF1673" /db_xref="GeneID:1024862" CDS complement(1702236..1702772) /gene="sodC" /locus_tag="SF1673" /note="Code: P; COG: COG2032" /codon_start=1 /transl_table=11 /product="superoxide dismutase" /protein_id="NP_707547.2" /db_xref="GeneID:1024862" /translation="MNGGPMKRFSLAILALVVATGAQAASEKVEMNLVTSQGVGQSIG SVTITETDKGLEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAESAGGHLDPQN TGKHEGPEGTGHLGDLPALVVNNDGKATDAVIAPRLKSLDEIKDKALMVHVGGDNMSD QPKPLGGGGERYACGVIK" misc_feature complement(1702239..1702757) /gene="sodC" /locus_tag="SF1673" /note="superoxide dismutase [Cu-Zn] SodC2; Region: PRK10290" /db_xref="CDD:182357" misc_feature complement(order(1702407..1702409,1702605..1702607)) /gene="sodC" /locus_tag="SF1673" /note="P-class dimer interface [polypeptide binding]; other site" /db_xref="CDD:238186" misc_feature complement(order(1702317..1702319,1702422..1702424, 1702431..1702433,1702482..1702484,1702551..1702553, 1702557..1702559)) /gene="sodC" /locus_tag="SF1673" /note="active site" /db_xref="CDD:238186" misc_feature complement(order(1702317..1702319,1702482..1702484, 1702551..1702553,1702557..1702559)) /gene="sodC" /locus_tag="SF1673" /note="Cu2+ binding site [ion binding]; other site" /db_xref="CDD:238186" misc_feature complement(order(1702422..1702424,1702431..1702433, 1702455..1702457,1702482..1702484)) /gene="sodC" /locus_tag="SF1673" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238186" gene complement(1702838..1703734) /locus_tag="SF1674" /db_xref="GeneID:1024860" CDS complement(1702838..1703734) /locus_tag="SF1674" /note="Code: R; COG: COG0656" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707548.1" /db_xref="GeneID:1024860" /translation="MVQRITIAPEGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL GVTTVDHADIYGGYQCEAAFGEALKLAPHLRERMEIVSKCGIATTAREENVIGHYITD RNHIIKSAEQSLINLATDHLDLLLIHRPDPLMDADEVADAFKHLHQSGKVRHFGVSNF TPAQFALLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRVRPMAWSCLGGGRLF NDDYFQPLRDELAVVAEELNAGSIEQVVYAWVLRLPSQPLPIIGSGKIERVRAAVEAE TLKMTRQQWFRIRKAALGYDVP" misc_feature complement(1702841..1703728) /locus_tag="SF1674" /note="Predicted oxidoreductase YdhF [General function prediction only]; Region: YdhF; COG4989" /db_xref="CDD:444013" gene complement(1703783..1704160) /locus_tag="SF1675" /db_xref="GeneID:1024856" CDS complement(1703783..1704160) /locus_tag="SF1675" /note="Code: R; COG: COG3313" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707549.2" /db_xref="GeneID:1024856" /translation="MFASIMFGVFVHALECSRPVGLVQAKLLLWTLTASIMVIILSEE GEVAEQLEFFPVQSPCRGICQSDERGFCRGCFRSRDERFNWNKMSDGEKQEVLRLCRQ RLMRKLRANKPASSDEPEQPSLF" misc_feature complement(1703849..1703998) /locus_tag="SF1675" /note="Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only]; Region: YdhL; COG3313" /db_xref="CDD:442542" gene 1704125..1704724 /locus_tag="SF1676" /db_xref="GeneID:1026444" CDS 1704125..1704724 /locus_tag="SF1676" /note="Code: K; COG: COG1309" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707550.2" /db_xref="GeneID:1026444" /translation="MNKHTEHDTREHLLATGEQLCLQRGFTGMGLSELLKTAEVPKGS FYHYFRSKEAFGVAMLERHYAAYHQRLAELLQSGEGNYRDRILAYYQQTLNQFCQHGT ISGCLTVKLSAEVCDLSEDMRSAMDKGARGVIALLSQALENGRENHCLTFCGEPLQQA QVLYALWLGANLQAKISRSFEPLENALAHVKNIIATPAV" misc_feature 1704146..1704631 /locus_tag="SF1676" /note="DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:440920" gene 1704761..1705858 /gene="nemA" /locus_tag="SF1677" /db_xref="GeneID:1024863" CDS 1704761..1705858 /gene="nemA" /locus_tag="SF1677" /note="Code: C; COG: COG1902" /codon_start=1 /transl_table=11 /product="N-ethylmaleimide reductase" /protein_id="NP_707551.1" /db_xref="GeneID:1024863" /translation="MSSEKLYSPLKVGAITAANRIFMAPLTRLRSIEPGDIPTPLMAE YYRQRASAGLIISEATQISAQAKGYAGAPGIHSPEQIAAWKKITAGVHAENGHMALQL WHTGRISHASLQPGGQAPVAPSALSAGTRTSLRDENGQAIRVETSMPRALELEEIPGI VNDFRQAIANAREAAFDLVELHSAHGYLLHQFLSPSSNHRTDQYGGSVENRARLVLEV VDAGIEEWGADRIGIRVSPIGTFQNTDNGPNEEADALYLIEQLGKRGIAYLHMSEPDW AGGEPYTDAFREKVRARFHGPIIGAGAYTVEKAETLIGKGLIDAVAFGRDWIANPDLV ARLQLKAELNPQRAESFYGGGAEGYTDYPTL" misc_feature 1704770..1705855 /gene="nemA" /locus_tag="SF1677" /note="N-ethylmaleimide reductase; Provisional; Region: PRK10605" /db_xref="CDD:182584" misc_feature order(1704833..1704835,1704839..1704841,1704935..1704937, 1705061..1705063,1705460..1705462,1705664..1705666, 1705724..1705726,1705730..1705738) /gene="nemA" /locus_tag="SF1677" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:239243" misc_feature order(1704833..1704835,1704839..1704841,1704935..1704937, 1705061..1705063,1705067..1705069,1705088..1705090, 1705304..1705306,1705313..1705315,1705319..1705321, 1705460..1705462,1705481..1705483,1705664..1705666, 1705724..1705726,1705730..1705735) /gene="nemA" /locus_tag="SF1677" /note="active site" /db_xref="CDD:239243" misc_feature order(1704839..1704841,1705067..1705069,1705304..1705306, 1705313..1705315,1705319..1705321,1705733..1705735) /gene="nemA" /locus_tag="SF1677" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:239243" misc_feature 1705319..1705321 /gene="nemA" /locus_tag="SF1677" /note="catalytic residue [active]" /db_xref="CDD:239243" gene 1705939..1706346 /gene="gloA" /locus_tag="SF1678" /db_xref="GeneID:1024857" CDS 1705939..1706346 /gene="gloA" /locus_tag="SF1678" /note="Code: E; COG: COG0346" /codon_start=1 /transl_table=11 /product="glyoxalase" /protein_id="NP_707552.1" /db_xref="GeneID:1024857" /translation="MRLLHTMLRVGDLQRSIDFYTKVLGMKLLRTSENPEYKYSLAFV GYGPETEEAVIELTYNWGVDKYELGTAYGHIALSVDNAAEACEKIRQNGGNVTREAGP VKGGTTVIAFVEDPDGYKIELIEEKDAGRGLGN" misc_feature 1705942..1706343 /gene="gloA" /locus_tag="SF1678" /note="lactoylglutathione lyase; Region: glyox_I; TIGR00068" /db_xref="CDD:272886" misc_feature order(1705945..1705965,1706008..1706010,1706074..1706076, 1706095..1706106,1706134..1706145,1706149..1706172, 1706176..1706178,1706293..1706295,1706302..1706304, 1706308..1706310) /gene="gloA" /locus_tag="SF1678" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:319965" misc_feature order(1705951..1705953,1705963..1705965,1706038..1706040, 1706053..1706055,1706059..1706061,1706104..1706106, 1706110..1706112,1706116..1706118,1706158..1706160, 1706230..1706232,1706266..1706268,1706272..1706274, 1706296..1706298,1706302..1706304) /gene="gloA" /locus_tag="SF1678" /note="active site" /db_xref="CDD:319965" misc_feature order(1705963..1705965,1706038..1706040,1706053..1706055, 1706059..1706061,1706110..1706112,1706116..1706118, 1706230..1706232,1706266..1706268,1706272..1706274, 1706296..1706298) /gene="gloA" /locus_tag="SF1678" /note="glutathione binding site [chemical binding]; other site" /db_xref="CDD:319965" gene 1706449..1707096 /gene="rnt" /locus_tag="SF1679" /db_xref="GeneID:1024880" CDS 1706449..1707096 /gene="rnt" /locus_tag="SF1679" /note="Code: L; COG: COG0847" /codon_start=1 /transl_table=11 /product="ribonuclease T" /protein_id="NP_707553.1" /db_xref="GeneID:1024880" /translation="MSDNAQLTGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL KMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSEYEALHEIFKV VRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLPAAEEV" misc_feature 1706476..1707075 /gene="rnt" /locus_tag="SF1679" /note="ribonuclease T; Region: RNaseT; TIGR01298" /db_xref="CDD:188129" misc_feature order(1706485..1706487,1706491..1706493,1706815..1706817, 1706884..1706898,1706905..1706907,1706914..1706919, 1706926..1706931,1707049..1707051) /gene="rnt" /locus_tag="SF1679" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99837" misc_feature order(1706515..1706526,1706530..1706532,1706806..1706811, 1706815..1706823,1706989..1706991,1707004..1707006) /gene="rnt" /locus_tag="SF1679" /note="putative active site [active]" /db_xref="CDD:99837" misc_feature order(1706515..1706526,1706530..1706532,1706806..1706811, 1706815..1706820,1706989..1706991,1707004..1707006) /gene="rnt" /locus_tag="SF1679" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:99837" misc_feature order(1706515..1706517,1706521..1706523,1706821..1706823, 1706989..1706991,1707004..1707006) /gene="rnt" /locus_tag="SF1679" /note="catalytic site [active]" /db_xref="CDD:99837" gene 1707189..1711647 /gene="lhr" /locus_tag="SF1680" /pseudo /db_xref="GeneID:1024868" misc_feature 1707189..1711647 /gene="lhr" /locus_tag="SF1680" /note="Similar to Escherichia coli K12 member of ATP-dependent helicase superfamily II gi: 1787942 (1539 aa). BLAST with identity of 98% in 1486 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1711695..1712899) /locus_tag="SF1681" /pseudo /db_xref="GeneID:1024891" misc_feature complement(1711695..1712899) /locus_tag="SF1681" /note="Similar to Escherichia coli K12 virulence protein gi: 1787702 (403 aa). BLAST with identity of 98% in 401 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1713446..1713793) /gene="ydhD" /locus_tag="SF1682" /db_xref="GeneID:1024840" CDS complement(1713446..1713793) /gene="ydhD" /locus_tag="SF1682" /note="Code: O; COG: COG0278" /codon_start=1 /transl_table=11 /product="glutaredoxin-4" /protein_id="NP_707554.1" /db_xref="GeneID:1024840" /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALAACG ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE TAAKYKSEEPDAE" misc_feature complement(1713449..1713793) /gene="ydhD" /locus_tag="SF1682" /note="Grx4 family monothiol glutaredoxin; Region: PRK10824" /db_xref="CDD:182759" misc_feature complement(order(1713581..1713586,1713698..1713706, 1713728..1713730)) /gene="ydhD" /locus_tag="SF1682" /note="putative GSH binding site [chemical binding]; other site" /db_xref="CDD:239326" misc_feature complement(order(1713695..1713697,1713704..1713706)) /gene="ydhD" /locus_tag="SF1682" /note="catalytic residues [active]" /db_xref="CDD:239326" gene 1714128..1714955 /gene="ydhO" /locus_tag="SF1683" /db_xref="GeneID:1024867" CDS 1714128..1714955 /gene="ydhO" /locus_tag="SF1683" /note="Code: M; COG: COG0791" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_707555.2" /db_xref="GeneID:1024867" /translation="MARINRISITLCALLFTTLPLTPMAHASKQARESSATTHITKKA DKKKSTATTKKTQKASQKTAKKAASKSMTKSKTASSVKKSSITASKNAKTRSKHAVNK TASASFTEKCTKRKGYKSHCVKVKNAASGTLADAHKAKVQKATKVAMNKLMQQIGKPY RWGGSSPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAGPIERSELKNGDLVFF RTQGRGTADHVGVYVGNGKFIQSPRTGQEIQITSLSEDYWQRHYVGARRVMTPKTLR" misc_feature 1714302..1714931 /gene="ydhO" /locus_tag="SF1683" /note="Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis]; Region: NlpC; COG0791" /db_xref="CDD:440554" gene 1715083..1715664 /gene="sodB" /locus_tag="SF1684" /db_xref="GeneID:1023373" CDS 1715083..1715664 /gene="sodB" /locus_tag="SF1684" /note="Code: P; COG: COG0605" /codon_start=1 /transl_table=11 /product="superoxide dismutase" /protein_id="NP_707556.1" /db_xref="GeneID:1023373" /translation="MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIK GTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFG SFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWE HAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA" misc_feature 1715083..1715661 /gene="sodB" /locus_tag="SF1684" /note="superoxide dismutase [Fe]; Region: PRK10543" /db_xref="CDD:182534" gene complement(1715810..1716979) /locus_tag="SF1685" /db_xref="GeneID:1024847" CDS complement(1715810..1716979) /locus_tag="SF1685" /note="Code: G; COG: COG2814" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707557.1" /db_xref="GeneID:1024847" /translation="MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGM LISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRIL TSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRM SFLATAGLGVISMVSLFFSLPKGGTGARPEVKKELAVLMRPQVLSALLTTVLGAGAMF TLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLL MVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMHVASEAPGLSSSVNIGAF NLGNALGAAAGGAVISAGLGYSFVPVTGAIVAGLALLLVFMSARKQPETVCVANS" misc_feature complement(1715858..1716961) /locus_tag="SF1685" /note="Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily; Region: MFS_NepI_like; cd17324" /db_xref="CDD:340882" misc_feature complement(order(1715966..1715968,1715975..1715980, 1715987..1715992,1715999..1716001,1716044..1716046, 1716056..1716058,1716068..1716073,1716218..1716220, 1716230..1716232,1716314..1716316,1716323..1716331, 1716338..1716343,1716350..1716352,1716554..1716556, 1716563..1716568,1716575..1716577,1716635..1716637, 1716644..1716652,1716656..1716661,1716809..1716811, 1716905..1716907,1716914..1716919,1716926..1716931)) /locus_tag="SF1685" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340882" gene 1717533..1718468 /locus_tag="SF1686" /pseudogene="unknown" /db_xref="GeneID:1024852" gene complement(1718584..1719525) /gene="ydhB" /locus_tag="SF1687" /db_xref="GeneID:1024846" CDS complement(1718584..1719525) /gene="ydhB" /locus_tag="SF1687" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator" /protein_id="NP_707559.1" /db_xref="GeneID:1024846" /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL AVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIV RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAF RDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR LVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQND MSPALTWLLEYLSDSETLNKEWLREPEQTPATGDYRR" misc_feature complement(1718626..1719525) /gene="ydhB" /locus_tag="SF1687" /note="putative DNA-binding transcriptional regulator; Provisional; Region: PRK11074" /db_xref="CDD:182948" gene 1719638..1720849 /gene="ydhC" /locus_tag="SF1688" /db_xref="GeneID:1024888" CDS 1719638..1720849 /gene="ydhC" /locus_tag="SF1688" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707560.1" /db_xref="GeneID:1024888" /translation="MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVS ASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRF VQAVGVCAAPVIWQALVTDYYRSQKVNRIFATIMPLVGLSPALAPLLGSWIMVHFSWQ AILATLYAITVVMILPIFWLKPTTKARNNSQDGLTLPDLLRSKTYRGNVLIYSACSAS FFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLV LFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAA LQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVDCPNH GNAEVAHSESH" misc_feature 1719638..1720846 /gene="ydhC" /locus_tag="SF1688" /note="Bcr/CflA family multidrug efflux MFS transporter; Region: PRK11043" /db_xref="CDD:182924" gene 1721140..1722288 /gene="cfa" /locus_tag="SF1689" /db_xref="GeneID:1024893" CDS 1721140..1722288 /gene="cfa" /locus_tag="SF1689" /note="Code: M; COG: COG2230" /codon_start=1 /transl_table=11 /product="cyclopropane fatty acyl phospholipid synthase" /protein_id="NP_707561.1" /db_xref="GeneID:1024893" /translation="MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNP DFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGAR LFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMIC EKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCKGLDVTIL LQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLN VDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPE IADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR" misc_feature 1721140..1722285 /gene="cfa" /locus_tag="SF1689" /note="cyclopropane fatty acyl phospholipid synthase; Region: PRK11705" /db_xref="CDD:183282" gene complement(1722328..1722969) /gene="ribE" /locus_tag="SF1690" /db_xref="GeneID:1024885" CDS complement(1722328..1722969) /gene="ribE" /locus_tag="SF1690" /note="Code: H; COG: COG0307" /codon_start=1 /transl_table=11 /product="riboflavin synthase subunit alpha" /protein_id="NP_707562.1" /db_xref="GeneID:1024885" /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAH NGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGH IMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVH LIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA" misc_feature complement(1722349..1722969) /gene="ribE" /locus_tag="SF1690" /note="riboflavin synthase subunit alpha; Provisional; Region: PRK13020" /db_xref="CDD:183846" gene 1723184..1723866 /gene="ydhE" /locus_tag="SF1691" /pseudo /db_xref="GeneID:1024853" misc_feature 1723184..1723866 /gene="ydhE" /locus_tag="SF1691" /note="Similar to Escherichia coli K12 transport protein gi: 1787953 (458 aa). BLAST with identity of 99% in 228 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element complement(1723873..1725200) /mobile_element_type="insertion sequence:iso-IS10R" gene complement(1725935..1727191) /locus_tag="SF1694" /db_xref="GeneID:1024890" CDS complement(1725935..1727191) /locus_tag="SF1694" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707565.1" /db_xref="GeneID:1024890" /translation="MGSDAKNLMSDGNVQIVKTGEVLGATQLTEGELIVEAGGRAENT VVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRH PEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGE LLVYPSGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGSIYRLGT DGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRA PVELTGSVALLDGASMIIGYGAELQQSTITVQQGGVLILDGSTVKGDSVTFIVGNINL NGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVNGDIRVEITD ASRQTLCNALKLQPDEDGIGATLQPA" misc_feature complement(1725938..1727191) /locus_tag="SF1694" /note="hypothetical protein; Provisional; Region: PRK09945" /db_xref="CDD:137602" gene 1727499..1727575 /locus_tag="SF4469" /db_xref="GeneID:3161824" tRNA 1727499..1727575 /locus_tag="SF4469" /product="tRNA-Val" /codon_recognized="GUC" /db_xref="GeneID:3161824" gene 1727683..1727988 /locus_tag="SF1695" /db_xref="GeneID:1024896" CDS 1727683..1727988 /locus_tag="SF1695" /codon_start=1 /transl_table=11 /product="monooxygenase" /protein_id="NP_707566.1" /db_xref="GeneID:1024896" /translation="MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTES EKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA" misc_feature 1727683..1727982 /locus_tag="SF1695" /note="putative monooxygenase; Provisional; Region: PRK11118" /db_xref="CDD:182975" gene 1728114..1729536 /locus_tag="SF1696" /pseudo /db_xref="GeneID:1024892" misc_feature 1728114..1729536 /locus_tag="SF1696" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787957 (535 aa). BLAST with identity of 98% in 474 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct." /pseudo gene complement(1729548..1730360) /locus_tag="SF1697" /db_xref="GeneID:1024901" CDS complement(1729548..1730360) /locus_tag="SF1697" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707567.1" /db_xref="GeneID:1024901" /translation="MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIRHALIEEGYT DWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCED NARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRI ANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTG VVDSIILGLGGSAALAYHDGERVRFAVAIEGENNIRTGVRYRLNEQHQFVEC" misc_feature complement(1729551..1730360) /locus_tag="SF1697" /note="hypothetical protein; Provisional; Region: PRK09946" /db_xref="CDD:182159" gene complement(1730364..1731149) /gene="ydhU" /locus_tag="SF1698" /db_xref="GeneID:1024881" CDS complement(1730364..1731149) /gene="ydhU" /locus_tag="SF1698" /codon_start=1 /transl_table=11 /product="thiosulfate reductase cytochrome subunit B" /protein_id="NP_707568.1" /db_xref="GeneID:1024881" /translation="MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVL GLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFAMVGAT AVKSLVAVHEVCGFLLLACWLGFVLINAVGDNGHHYRIRRQGWLERAAKQTRFYLFGI MQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYW LLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH" misc_feature complement(1730367..1731149) /gene="ydhU" /locus_tag="SF1698" /note="thiosulfate reductase cytochrome B subunit; Provisional; Region: PRK15006" /db_xref="CDD:184968" gene complement(1731146..1731865) /locus_tag="SF1699" /db_xref="GeneID:1027793" CDS complement(1731146..1731865) /locus_tag="SF1699" /note="Code: C; COG: COG0437" /codon_start=1 /transl_table=11 /product="oxidoreductase, Fe-S subunit" /protein_id="NP_707569.1" /db_xref="GeneID:1027793" /translation="MSWIGWTVAATALGDNQMSFTRRKFVLGMGTVIFFTGSASSLLA NTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQY HFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYLVRYLNP VTKVADKCDFCAESRLEKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLP GAGKPHLYRRFGQHLIKKENV" misc_feature complement(1731185..1731811) /locus_tag="SF1699" /note="cytochrome c nitrite reductase, Fe-S protein; Region: cyt_nit_nrfC; TIGR03149" /db_xref="CDD:274451" gene complement(1731878..1732516) /locus_tag="SF1700" /db_xref="GeneID:1024882" CDS complement(1731878..1732516) /locus_tag="SF1700" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707570.2" /db_xref="GeneID:1024882" /translation="MNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAE FIRQHSAAGQLVARTVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYS TQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEA AIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP" misc_feature complement(1731881..1732516) /locus_tag="SF1700" /note="YdhW family putative oxidoreductase system protein; Region: PRK09947" /db_xref="CDD:182160" gene complement(1732529..1734325) /gene="ydhV" /locus_tag="SF1701" /db_xref="GeneID:1024878" CDS complement(1732529..1734325) /gene="ydhV" /locus_tag="SF1701" /note="Code: C; COG: COG2414" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707571.1" /db_xref="GeneID:1024878" /translation="MKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRAT TEEICRLTSPETCVAAIGQAGENLIPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEG TKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWG AAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNI PRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWC NYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELS HLADGSYAIAERWNLGKEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVKCMFNRDCM THTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLH NAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHR AYTVKPMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGW DPQLGCPTRETLQRLGLEDIAADLAAHNLLPA" misc_feature complement(1732532..1734325) /gene="ydhV" /locus_tag="SF1701" /note="putative oxidoreductase; Provisional; Region: PRK09849" /db_xref="CDD:236629" gene complement(1734651..1735277) /locus_tag="SF1702" /db_xref="GeneID:1024895" CDS complement(1734651..1735277) /locus_tag="SF1702" /note="Code: C; COG: COG1142" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707572.1" /db_xref="GeneID:1024895" /translation="MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQE DIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFG DNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCS ACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV" misc_feature complement(1734654..1735277) /locus_tag="SF1702" /note="ferredoxin-like protein; Region: PRK09898" /db_xref="CDD:182135" gene complement(1735733..1735942) /locus_tag="SF1703" /db_xref="GeneID:1024874" CDS complement(1735733..1735942) /locus_tag="SF1703" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707573.1" /db_xref="GeneID:1024874" /translation="MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTA LANKRIQRSELEKQAMETVINALVK" misc_feature complement(1735736..1735942) /locus_tag="SF1703" /note="fumarate hydratase FumD; Region: PRK10292" /db_xref="CDD:182359" mobile_element 1735974..1736741 /mobile_element_type="insertion sequence:IS1" gene 1736223..1736726 /gene="insB" /locus_tag="SF1704" /db_xref="GeneID:1024871" CDS 1736223..1736726 /gene="insB" /locus_tag="SF1704" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707574.1" /db_xref="GeneID:1024871" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG CPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 1736331..1736723 /gene="insB" /locus_tag="SF1704" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 1737275..1738687 /gene="pykF" /locus_tag="SF1705" /db_xref="GeneID:1024886" CDS 1737275..1738687 /gene="pykF" /locus_tag="SF1705" /note="Code: G; COG: COG0469" /codon_start=1 /transl_table=11 /product="pyruvate kinase" /protein_id="NP_707575.2" /db_xref="GeneID:1024886" /translation="MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHG QRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGN SEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL PGVSIALPALAEKDKQDLIFGCEKGVDFVAASFIRKRSDVIEIREHLKAHGGENIHII SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER TDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFP DATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVV MVSGALVPSGTTNTASVHVL" misc_feature 1737275..1738684 /gene="pykF" /locus_tag="SF1705" /note="pyruvate kinase PykF; Region: PRK09206" /db_xref="CDD:181699" misc_feature order(1737281..1737286,1737452..1737454,1737458..1737460, 1737482..1737493,1737746..1737751,1737767..1737769, 1737776..1737790,1737833..1737835,1737857..1737859, 1737878..1737880,1737914..1737916,1738022..1738024, 1738076..1738081,1738091..1738093,1738187..1738189, 1738193..1738195,1738280..1738282,1738286..1738291, 1738439..1738441,1738445..1738447,1738451..1738453, 1738484..1738486,1738493..1738498,1738502..1738504, 1738508..1738516) /gene="pykF" /locus_tag="SF1705" /note="domain interfaces [active]" /db_xref="CDD:238178" misc_feature order(1737368..1737370,1737374..1737376,1737470..1737472, 1737851..1737853,1737932..1737934,1737938..1737940, 1738010..1738012,1738106..1738108) /gene="pykF" /locus_tag="SF1705" /note="active site" /db_xref="CDD:238178" gene 1738999..1739235 /gene="lpp" /locus_tag="SF1706" /db_xref="GeneID:1024897" CDS 1738999..1739235 /gene="lpp" /locus_tag="SF1706" /codon_start=1 /transl_table=11 /product="murein lipoprotein" /protein_id="NP_707576.1" /db_xref="GeneID:1024897" /translation="MKATKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQL SNDVNAMRSDVQAAKDDAARANQRLDNMATKYRK" misc_feature 1738999..1739232 /gene="lpp" /locus_tag="SF1706" /note="major outer membrane lipoprotein; Region: PRK15396" /db_xref="CDD:185294" gene complement(1739298..1740302) /gene="ynhG" /locus_tag="SF1707" /db_xref="GeneID:1024904" CDS complement(1739298..1740302) /gene="ynhG" /locus_tag="SF1707" /note="Code: S; COG: COG1376" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707577.1" /db_xref="GeneID:1024904" /translation="MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTV QEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTTITIPSQLLLPDAPRQGIIVNL AELRLYYYPPGENIVQVYPIGIGLQGLETPVMETRVGQKIPNPTWTPTAGIRQRSLER GIKLPPVVPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIK ALFSSVRTGTPVKVINEPVKYSVEPNGMRYVEVHRPLSAEEQQNVQTMPYTLPAGFTQ FKDNKAVDQKLVDKALYRRAGYPVSVSSGATPAASNAPSVESAQNGEPEQGNMLRATQ " misc_feature complement(1739394..1740284) /gene="ynhG" /locus_tag="SF1707" /note="L,D-transpeptidase; Provisional; Region: PRK10260" /db_xref="CDD:182341" gene complement(1740451..1740867) /gene="ynhA" /locus_tag="SF1708" /db_xref="GeneID:1024916" CDS complement(1740451..1740867) /gene="ynhA" /locus_tag="SF1708" /note="Code: R; COG: COG2166" /codon_start=1 /transl_table=11 /product="cysteine desufuration protein SufE" /protein_id="NP_707578.1" /db_xref="GeneID:1024916" /translation="MALLPDKEKLLRNFLRCANWEEKYLYIIELGQRLPELRAEDGSP QNSIQGCQSQVWIVMRQNAQGIIELQGDSDAAIVKGLIAVVFILYDQMTPQDIVNFDV RPWFEKMALTQHLTPSRSQGLEAMIRAIRAKAAALS" misc_feature complement(1740490..1740867) /gene="ynhA" /locus_tag="SF1708" /note="cysteine desulfuration protein SufE; Region: PRK09296" /db_xref="CDD:181767" gene complement(1740880..1743438) /locus_tag="SF1710" /pseudo /db_xref="GeneID:1024876" misc_feature complement(1740880..1743438) /locus_tag="SF1710" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787970 (407 aa). BLAST with identity of 98% in 852 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element 1741707..1743035 /mobile_element_type="insertion sequence:iso-IS10R" gene 1741814..1743022 /locus_tag="SF1709" /db_xref="GeneID:1024911" CDS 1741814..1743022 /locus_tag="SF1709" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_707579.1" /db_xref="GeneID:1024911" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature 1741928..1742983 /locus_tag="SF1709" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene complement(1743435..1744706) /gene="ynhC" /locus_tag="SF1711" /db_xref="GeneID:1024883" CDS complement(1743435..1744706) /gene="ynhC" /locus_tag="SF1711" /note="Code: R; COG: COG0719" /codon_start=1 /transl_table=11 /product="cysteine desulfurase" /protein_id="NP_707580.1" /db_xref="GeneID:1024883" /translation="MAGLPNSSNALQQWHHLFEAEGTKRSPQAQQHLQQLLRTGLPTR KHENWKYTPLEGLTNSQFVSIAGDISPQQRDALALTLDAVRLVFVDGRYVPALSDAIE GSGYEVSINDDRQGLPDAIQAEVFLHLTESLAQSVTHIAVKRGQRPAKPLLLMHITQG VAGEEVNTAHYRHHLDLAEGAEATVIEHFVSLNDARHFTGARFTINVAANAHLQHIKL AFENPVSHHFAHNDLLLADDATAFSHSFLLGGAVLRHNTSTQLNGENSTLRINSLAMP VKNEVCDTRTWLEHNKGFCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNN LLMGKLAEVDTKPQLEIYADDVKCSHGATVGRIDDEQMFYLRSRGINQQDAQQMIIYA FAAELTEALRDEGLKQQVLARIGQRLPGGAR" misc_feature complement(1743438..1744706) /gene="ynhC" /locus_tag="SF1711" /note="Fe-S cluster assembly protein SufD; Region: PRK10948" /db_xref="CDD:236804" gene complement(1744681..1745427) /gene="sufC" /locus_tag="SF1712" /db_xref="GeneID:1024870" CDS complement(1744681..1745427) /gene="sufC" /locus_tag="SF1712" /note="Code: R; COG: COG0396" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_707581.1" /db_xref="GeneID:1024870" /translation="MLSIKDLHVSVEDKAILRGLSLDVRPGEVHAIMGPNGSGKSTLS ATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTA LNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA VLEPELCILDESDTGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHV LYQGRIVKSGDFTLVKQLEEQGYGWLTEQQ" misc_feature complement(1744684..1745427) /gene="sufC" /locus_tag="SF1712" /note="cysteine desulfurase ATPase component; Reviewed; Region: sufC; PRK09580" /db_xref="CDD:181965" gene complement(1745437..1746924) /gene="ynhE" /locus_tag="SF1713" /db_xref="GeneID:1027795" CDS complement(1745437..1746924) /gene="ynhE" /locus_tag="SF1713" /note="Code: R; COG: COG0719" /codon_start=1 /transl_table=11 /product="cysteine desulfurase" /protein_id="NP_707582.1" /db_xref="GeneID:1027795" /translation="MSRNTEATDDVKTWTGGPLNYKEGFFTQLATDELAKGINEEVVR AISAKRNEPEWMLEFRLNAYRAWLEMEEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDT CASEPGAVQQTGANAFLSKEVEAAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLA EQGIIFCSFGEAIHDHTELVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCP MELSTYFRINAEKTGQFERTILVADEDSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKN AEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCIL RGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTKSTIISKGISAGHSQNSYRGLVKI MPTATNARNFTQCDSMLIGANCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQ RGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG" misc_feature complement(1745440..1746924) /gene="ynhE" /locus_tag="SF1713" /note="cysteine desulfurase activator complex subunit SufB; Provisional; Region: PRK11814" /db_xref="CDD:236990" gene complement(1746933..1747301) /gene="sufA" /locus_tag="SF1714" /db_xref="GeneID:1024900" CDS complement(1746933..1747301) /gene="sufA" /locus_tag="SF1714" /note="Code: S; COG: COG0316" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster assembly scaffold protein" /protein_id="NP_707583.1" /db_xref="GeneID:1024900" /translation="MDMHSGTFNPQDFAWQGLTLTPAAAIHIRELVAKQPGMVGVRLG VKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQSMPFIDGTEVDFVREGLNQI FKFHNPKAQNECGCGESFRV" misc_feature complement(1746936..1747301) /gene="sufA" /locus_tag="SF1714" /note="iron-sulfur cluster assembly scaffold protein; Provisional; Region: sufA; PRK09504" /db_xref="CDD:181915" gene complement(1747849..1748118) /locus_tag="SF1715" /db_xref="GeneID:1024912" CDS complement(1747849..1748118) /locus_tag="SF1715" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707584.1" /db_xref="GeneID:1024912" /translation="MTHIAFGHYLHSKRWYTVQVLSKSEDAMSTQLDPTQLAIEFLRR DQSNLSPAQYLKRLKQLELEFADLLTLSSAELKEEIYFAWRLGVH" misc_feature complement(1747852..1748037) /locus_tag="SF1715" /note="Domain of unknown function; Region: YdiH; pfam15930" /db_xref="CDD:318201" gene complement(1748137..1748547) /locus_tag="SF1716" /db_xref="GeneID:1023371" CDS complement(1748137..1748547) /locus_tag="SF1716" /note="Code: Q; COG: COG2050" /codon_start=1 /transl_table=11 /product="acyl-CoA esterase" /protein_id="NP_707585.1" /db_xref="GeneID:1023371" /translation="MIWKRKITLEALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDS RTKQPFGLLHGGASVVLAESIGSVAGYLCTEGEQKVVGLEINANHVRSAREGRVRGIC KPLHLGSRHQVWQIEIFDEKGRLCCSSRLTTAIL" misc_feature complement(1748140..1748547) /locus_tag="SF1716" /note="1,4-dihydroxy-2-naphthoyl-CoA hydrolase; Region: PRK10293" /db_xref="CDD:182360" misc_feature complement(order(1748272..1748283,1748302..1748304, 1748389..1748391)) /locus_tag="SF1716" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:239527" misc_feature complement(order(1748281..1748283,1748287..1748301, 1748371..1748373,1748380..1748382,1748386..1748388)) /locus_tag="SF1716" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:239527" misc_feature complement(order(1748302..1748304,1748344..1748349, 1748356..1748361,1748383..1748385)) /locus_tag="SF1716" /note="PHB binding site [active]" /db_xref="CDD:239527" gene complement(1748544..1751600) /gene="ydiJ" /locus_tag="SF1717" /db_xref="GeneID:1024875" CDS complement(1748544..1751600) /gene="ydiJ" /locus_tag="SF1717" /codon_start=1 /transl_table=11 /product="oxidase" /protein_id="NP_707586.1" /db_xref="GeneID:1024875" /translation="MIPQISLAPGVVQLVLNFLQELEQQGFTGDAATSYADRLTMSTD NSIYQLLPDAVVFPRSTADVALIARLAAQERYSSLIFTPRGGGTGTNGQALNQGIIVD MSRHMNRIIEINPEEGWVRVEAGVIKDQLNQYLKPFGYFFAPELSTSNRATLGGMINT DASGQGSLVYGKTSDHVLGVRAVLLGGDILDTQPLPVELAETLGKSNTTIGRIYNTVY QRCRQQRQLIIDNFPKLNRFLTGYDLRHVFNDEMTEFDLTRILTGSEGTLAFITEARL DITRLPKVRRLVNVKYDSFDSALRNAPFMVEARALSVETVDSKVLNLAREDIVWHSVS ELITDMPDKEMLGLNIVEFAGDDEALIDERVNALCVRLDELIASQQAGVIGWQVCREL AGVERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDSHGLSY GMFGHVDAGVLHVRPALDMCDPQQEILMKQISDDVVALTAKYGGLLWGEHGKGFRAEY SPAFFGEELFAELRKVKAAFDPHNRLNPGKICPPEGLDAPMMKVDAVKRGTFDRQIPI AVRQQWRGAMECNGNGLCFNFDARSPMCPSMKITQNRIHSPKGRATLVREWLRLLADR GVDPLKLEQELPESGVSLRTLIARTRNSWHANKGEYDFSHEVKEAMSGCLACKACSTQ CPIKIDVPEFRSRFLQLYHTRYLRPLRDHLVATVESYAPLMARAPKTFNFFINQPLVR KLSEKHIGMVDLPLLSVPSLQQQMVGHRSANMTLEQLEALNAEQKARTVLVVQDPFTS YYDAQVVADFVRLVEKLGFQPVLLPFSPNGKAQHIKGFLNRFAKTAKKTADFLNRMAK LGMPMVGVDPALVLCYRDEYKLALGEERGEFNVLLANEWLASALESHPVATVSGESWY FFGHCTEVTALPGAPAQWAAIFARFGAKLENVSVGCCGMAGTYGHEAKNHENSLGIYE LSWHQAMQRLPRNRCLATGYSCRSQVKRVEGTGVRHPVQALLEIIK" misc_feature complement(1749972..1751549) /gene="ydiJ" /locus_tag="SF1717" /note="FAD/FMN-containing lactate dehydrogenase/glycolate oxidase [Energy production and conversion]; Region: GlcD; COG0277" /db_xref="CDD:440046" misc_feature complement(1748547..1750118) /gene="ydiJ" /locus_tag="SF1717" /note="Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:440017" gene 1751989..1753101 /locus_tag="SF1718" /db_xref="GeneID:1024908" CDS 1751989..1753101 /locus_tag="SF1718" /note="Code: R; COG: COG0628" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707587.1" /db_xref="GeneID:1024908" /translation="MVNVRQPRDVAQILLSVLFLAIMIVACLWIVQPFILGFAWAGTV VIATWPVLLRLQKIMFGRRSLAVLVMTLLLVMVFIIPIALLVNSIVDGSGPLIKAISS GDMTLPDLAWLNTIPVIGAKLYAGWHNLLDMGGTAIMAKVRPYIGTTTTWFVGQAAHI GRFMVHCALMLLFSALLYWRGEQVAQGIRHFATRLAGVRGDAAVLLAAQAIRAVALGV VVTALVQAVLGGIGLAVSGVPYATLLTVLMILSCLVQLGPLPVLIPAIIWLYWTGDTT WGTVLLVWSGVVGTLDNVIRPMLIRMGADLPLILILSGVIGGLIAFGMIGLFIGPVLL AVSWRLFAAWVEEVPPPTDQPEEILEELGEIEKPNK" misc_feature 1751989..1753053 /locus_tag="SF1718" /note="AI-2E family transporter YdiK; Region: PRK10983" /db_xref="CDD:182881" gene 1753530..1753886 /locus_tag="SF1719" /db_xref="GeneID:1024920" CDS 1753530..1753886 /locus_tag="SF1719" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707588.2" /db_xref="GeneID:1024920" /translation="MNAYELQALRHIFAMTIDECATWIAQTGDSESWRQWENGKCAIP DCVVEQLLAMRQQRKKHLHAIIEKINNRIGNNTMRFFPDLTAFQQVYPDGNFIDWKIY QSVAAELYAHDLERLC" misc_feature 1753533..1753883 /locus_tag="SF1719" /note="Domain of unknown function (DUF1870); Region: DUF1870; pfam08965" /db_xref="CDD:401061" gene 1754046..1755191 /locus_tag="SF1720" /db_xref="GeneID:1024913" CDS 1754046..1755191 /locus_tag="SF1720" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_707589.2" /db_xref="GeneID:1024913" /translation="MGVILMSLNMASLETLWQTNAAGVSIVISSLGIGRLSVLLFAGL LSDRFGRRPFIMLGMCCYMAFFFDILQTNNIIIAYVFGFLAGMANSFLDAGTYPSLME AFPRSPGTANILIKAFVSSGQFLLPLIISLLVWAELWFGWSFMIAAGIMFINALFLYR CTFPPHPGRRLPVIKKTTSSTEHRCSIIDLASYTLYGYISMATFYLVSQWLAQYGQFV AGMSYTMSIKLLSIYTVGSLLCVFITAPLIRNTVRPTTLLMLYTFISFIALFTVCLHP TFYVVIIFAFVIGFTSAGGVVQIGLTLMAERFPYAKGKATGIYYSTGSIATFTIPLIT AHLSQRSIADIMWFDTAIGFLLALFIGLRSRKKTRHHSLKENVAPGG" misc_feature 1754046..1755143 /locus_tag="SF1720" /note="Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters; Region: MFS_YdiM_like; cd17396" /db_xref="CDD:340954" misc_feature order(1754052..1754057,1754064..1754066,1754160..1754162, 1754310..1754315,1754319..1754327,1754334..1754336, 1754391..1754393,1754400..1754405,1754412..1754414, 1754625..1754627,1754634..1754639,1754646..1754654, 1754661..1754663,1754754..1754756,1754766..1754768, 1754919..1754924,1754934..1754936,1754946..1754948, 1754994..1754996,1755003..1755008,1755015..1755020, 1755027..1755029) /locus_tag="SF1720" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340954" gene 1755485..1756645 /locus_tag="SF1721" /db_xref="GeneID:1024884" CDS 1755485..1756645 /locus_tag="SF1721" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="amino acid/amine transport protein" /protein_id="NP_707590.1" /db_xref="GeneID:1024884" /translation="MTSLAEKFSTDNAGIAYLISGIGLGRLISILFFGVISDKFGRRA VILMAVIMYLLFFFGIPACPNLTLAYGLAVCVGIANSALDTGGYPALMECFPKASGSA VILVKAMVSFGQMFYPMLVSYMLLNNIWYGYGLIIPGILFVLITLMLLKSKFPSQLVD ASVANELPQMNSKPLVWLEGVSSVLFGVAAFSTFYVIVVWMPKYAMAFAGMSEAEALK TISYYSMGSLVCVFIFAALLKKMVRPIWANVFNSALATITAAIIYLYPSPLVCNAGAF VIGFSAAGGILQLGVSVMSEFFPKSKAKVTSIYMMMGGLANFVIPLITGYLSNIGLQY IIVLDFTFALLALITAIIVFSRYYRVFIIPENDVRFGERKFSTRLNTIKHRG" misc_feature 1755485..1756561 /locus_tag="SF1721" /note="Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters; Region: MFS_YdiM_like; cd17396" /db_xref="CDD:340954" misc_feature order(1755572..1755574,1755722..1755727,1755731..1755739, 1755746..1755748,1755803..1755805,1755812..1755817, 1755824..1755826,1756034..1756036,1756043..1756048, 1756055..1756063,1756070..1756072,1756163..1756165, 1756175..1756177,1756328..1756333,1756343..1756345, 1756355..1756357,1756403..1756405,1756412..1756417, 1756424..1756429,1756436..1756438) /locus_tag="SF1721" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340954" gene 1756657..1757523 /gene="aroE" /locus_tag="SF1722" /db_xref="GeneID:1024925" CDS 1756657..1757523 /gene="aroE" /locus_tag="SF1722" /note="Code: E; COG: COG0169" /codon_start=1 /transl_table=11 /product="quinate/shikimate dehydrogenase" /protein_id="NP_707591.1" /db_xref="GeneID:1024925" /translation="MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEV DNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLR GYNTDGTGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEF FDKALAFAQRVNENTDCVVTDTDLADQQAFAEALASADILTNGTKVGMKPFENESLVN DISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFP LEYVKQVMGFGA" misc_feature 1756657..1757520 /gene="aroE" /locus_tag="SF1722" /note="quinate/shikimate dehydrogenase; Reviewed; Region: PRK12749" /db_xref="CDD:183721" gene 1757554..1758312 /gene="aroD" /locus_tag="SF1723" /db_xref="GeneID:1024864" CDS 1757554..1758312 /gene="aroD" /locus_tag="SF1723" /note="Code: E; COG: COG0710" /codon_start=1 /transl_table=11 /product="3-dehydroquinase" /protein_id="NP_707592.1" /db_xref="GeneID:1024864" /translation="MKTVTVKDLVIGAGAPKIIVSLMAKDIARVKSEALAYREADFDI LEWRVDHFADLSNVESVMAAAKILRETMPEKPLLFTFRSAKEGGEQAISTEAYIALNR AAIDSGLVDMIDLELFTGDDQVKETVAYAHAHDVKVVMSNHDFHKTPEAEEIIARLRK MQSFDADIPKIALMPQSTSDVLTLLAATLEMQEQYADRPIITMSMAKTGVISRLVGEV FGSAATFGAVKKASAPGQISVNDLRTVLTILHQA" misc_feature 1757554..1758309 /gene="aroD" /locus_tag="SF1723" /note="type I 3-dehydroquinate dehydratase; Region: aroD; PRK02412" /db_xref="CDD:235036" misc_feature order(1757614..1757616,1757689..1757691,1757695..1757697, 1757797..1757799,1757980..1757982,1758061..1758063, 1758190..1758192,1758247..1758252,1758259..1758261) /gene="aroD" /locus_tag="SF1723" /note="active site" /db_xref="CDD:188633" misc_feature 1758061..1758063 /gene="aroD" /locus_tag="SF1723" /note="catalytic residue [active]" /db_xref="CDD:188633" misc_feature order(1758097..1758099,1758109..1758111,1758118..1758120, 1758193..1758198,1758208..1758210,1758274..1758276, 1758286..1758288,1758295..1758297) /gene="aroD" /locus_tag="SF1723" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188633" mobile_element complement(1758379..1759146) /mobile_element_type="insertion sequence:IS1" gene complement(1758394..1758789) /gene="insB" /locus_tag="SF1724" /db_xref="GeneID:1024889" CDS complement(1758394..1758789) /gene="insB" /locus_tag="SF1724" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707593.1" /db_xref="GeneID:1024889" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1758397..1758786) /gene="insB" /locus_tag="SF1724" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1758816..1759091) /gene="insA" /locus_tag="SF1725" /db_xref="GeneID:1024922" CDS complement(1758816..1759091) /gene="insA" /locus_tag="SF1725" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707594.1" /db_xref="GeneID:1024922" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1758819..1759070) /gene="insA" /locus_tag="SF1725" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1759201..1760691 /gene="ydeN" /locus_tag="SF1726" /db_xref="GeneID:1026452" CDS 1759201..1760691 /gene="ydeN" /locus_tag="SF1726" /note="Code: P; COG: COG3119" /codon_start=1 /transl_table=11 /product="sulfatase" /protein_id="NP_707595.1" /db_xref="GeneID:1026452" /translation="MDDLGYGQLPFDKGSFDPKTMENREVVDTYKIGIDKAIEAAQKS TPTLLSLMDEGVRFTNGYVAHGVSGPSRAAIMTGRAPARFGVYSNTDAQDGIPLTETF LPELFQNHGYYTAAVGKWHLSKISNVPVPEDKQTRDYHDNFTTFSAEEWQPQNRGFDY FMGFHAAGTAYYNSPSLFKNRERVPAKGYISDQLTDEAIGVVDRAKTLDQPFMLYLAY NAPHLPNDNPAPDQYQKQFNTGSQTADNYYASVYSVDQGVKRILEQLKKNGQYDNTII LFTSDNGAVIDGPLPLNGAQKGYKSQTYPGGTHTPMFMWWKGKLQPGNYDKLISAMDF YPTALDAADISIPKDLKLDGVPLLPWLQDKKQGEPHKNLTWITSYSHWFDEENIPFWD NYHKFVRHQSDDYPHNPNTEDLSQFSYTVRNNDYSLVYTVENNQLGLYKLTDLQQKDN LAAANPQVVKEMQGVVREFIDSSQPPLSEVNQEKFNNIKKALSEAK" misc_feature 1759330..1760589 /gene="ydeN" /locus_tag="SF1726" /note="alkaline phosphatases and sulfatases; Region: ALP_like; cl23718" /db_xref="CDD:474031" misc_feature order(1759402..1759404,1759864..1759866,1760041..1760046) /gene="ydeN" /locus_tag="SF1726" /note="active site" /db_xref="CDD:293765" gene 1760743..1761900 /locus_tag="SF1727" /db_xref="GeneID:1024903" CDS 1760743..1761900 /locus_tag="SF1727" /note="Code: R; COG: COG0641" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707596.2" /db_xref="GeneID:1024903" /translation="MHVTAKPSSFQCNLKCDYCFYLEKESQFTHEKWMDDSTLKEFIK QYIEASGNQVYFTWQGGEPTLAGLDFFRKVIHYQQRYAGQKRIFNTLQTNGILLNNEW CAFLKEHEFLVGISIDGPQELHDRYRRSNSGNGTFAKVIAAIERLKSYQVEFNTLTVI NNVNVHYPLEVYHFLKSIGSKHMQFIELLETGTPNIDFSGHSENTFRIIDFSVPPTAY GKFMSTIFMQWVKNDVGEIFIRQFESFVSRFLGNGHTSCIFQESCKDNLVVESNGDIY ECDHFVYPQYKIGNINKSELKTMNSVQLTAQKKRISAKCQQCAYKPICNGGCPKHRIT KVNNETVSYFCEGYKILFSTMVPYMNAMVELAKNRVPLYHIMDVAKQMENN" misc_feature 1760746..1761837 /locus_tag="SF1727" /note="anaerobic sulfatase-maturating enzyme; Region: sulfatase_rSAM; TIGR03942" /db_xref="CDD:188457" gene 1762191..1763876 /gene="yddA" /locus_tag="SF1728" /pseudo /db_xref="GeneID:1024924" misc_feature 1762191..1763876 /gene="yddA" /locus_tag="SF1728" /note="Similar to Escherichia coli K12 ATP-binding component of a transport system gi: 1787772 (562 aa). BLAST with identity of 98% in 562 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1763914..1766274 /gene="yddB" /locus_tag="SF1729" /db_xref="GeneID:1024919" CDS 1763914..1766274 /gene="yddB" /locus_tag="SF1729" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707597.1" /db_xref="GeneID:1024919" /translation="MKRVLIPGVILCGADVAQAVDDKNMYMYFFEEMTVYAPVPVPVN GNTHYTSESIERLPTGNGNISDLLRTNPAVRMDSTQSTSLNQGDIRPEKISIHGASPY QNAYLIDGISATNNLNPANESDASSATNISGMSQGYYLDVSLLDNVTLYDSFVPVEFG RFNGGVIDAKIKRFNADDSKVKLGYRTTRLDWLTSHIDENNKSAFNQGSSGSTYFSPD FKKNFYTLSFNQELADNFGVTAGLSRRQSDITRADYVSNDGIVAGRAQYKNVIDTALS KFTWFASDRFTHDLTLKYTGSSRDYNTSTFPQSDREMGNKSYGLAWDMDTQLAWAKLR TTVGWDHISDYTRHDHDIWYTELSCTYGDITGRCTRGGLGHISQAVDNYTFKTRLDWQ KFAVGDVSHQPYFGAEYIYSDAWTERHNQSESYVINAAGKKTNHTIYHKGKGSLGIDN YTLYMADHISWRNVSLMPGVRYDYDNYLSNHNISPRFMTEWDIFADQTSMITAGYNRY YGGNILDMGLRDIRNSWTESVSGNKTLTRYQNLKTPYNDELAMGLQQKIDKNVIARAS EAHDQISKSSRTDSATKTTITEYNNDGKTKTHSFNLSFELAEPLHIRQVDINPQIVFS YIKSKGNLSLNNGYEESNTGDNQVVYNGNLVSYDSVPVADFNNPLKISLNMDFTHQPS GLVWANTLAWQEARKARIILGKTNAQYISEYSDYKQYVDEKLDSSLTWDTRLSWTPQF LKQQNLTISADILNVLDSKTAVDTTNTGVATYASGRTFWLDVSMKF" misc_feature 1764004..1765731 /gene="yddB" /locus_tag="SF1729" /note="Outer membrane receptor for ferrienterochelin and colicins [Inorganic ion transport and metabolism]; Region: FepA; COG4771" /db_xref="CDD:443803" mobile_element complement(1766529..1767296) /mobile_element_type="insertion sequence:IS1" gene complement(1766544..1767047) /gene="insB" /locus_tag="SF1730" /db_xref="GeneID:1024906" CDS complement(1766544..1767047) /gene="insB" /locus_tag="SF1730" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707598.1" /db_xref="GeneID:1024906" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKLLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature complement(1766547..1766939) /gene="insB" /locus_tag="SF1730" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 1767122..1769053 /locus_tag="SF1731" /pseudogene="unknown" /db_xref="GeneID:1024887" mobile_element 1769032..1769799 /mobile_element_type="insertion sequence:IS1" gene 1769087..1769362 /gene="insA" /locus_tag="SF1732" /db_xref="GeneID:1024905" CDS 1769087..1769362 /gene="insA" /locus_tag="SF1732" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707600.1" /db_xref="GeneID:1024905" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 1769108..>1769359 /gene="insA" /locus_tag="SF1732" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1769389..1769784 /gene="insB" /locus_tag="SF1733" /db_xref="GeneID:1024902" CDS 1769389..1769784 /gene="insB" /locus_tag="SF1733" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707601.1" /db_xref="GeneID:1024902" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 1769392..1769781 /gene="insB" /locus_tag="SF1733" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 1770262..1771662 /gene="gadB" /locus_tag="SF1734" /db_xref="GeneID:1024938" CDS 1770262..1771662 /gene="gadB" /locus_tag="SF1734" /note="Code: E; COG: COG0076" /codon_start=1 /transl_table=11 /product="glutamate decarboxylase" /protein_id="NP_707602.2" /db_xref="GeneID:1024938" /translation="MDKKQVTDLRSELLDSRFGAKSISTIAESKRFPLHEMRDDVAFQ IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVN MVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG PVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYE FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTL YDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD HPKLQGIAQQNSFKHT" misc_feature 1770307..1771608 /gene="gadB" /locus_tag="SF1734" /note="glutamate decarboxylase; Region: Glu-decarb-GAD; TIGR01788" /db_xref="CDD:130848" misc_feature order(1770637..1770642,1770649..1770651,1770883..1770885, 1770988..1770990,1770997..1770999,1771078..1771080, 1771087..1771089) /gene="gadB" /locus_tag="SF1734" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99743" misc_feature 1771087..1771089 /gene="gadB" /locus_tag="SF1734" /note="catalytic residue [active]" /db_xref="CDD:99743" gene 1771818..1773353 /gene="xasA" /locus_tag="SF1735" /db_xref="GeneID:1024915" CDS 1771818..1773353 /gene="xasA" /locus_tag="SF1735" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="acid sensitivity protein transporter" /protein_id="NP_707603.2" /db_xref="GeneID:1024915" /translation="MATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVF FLLLGGILWFIPVGLCAAEMATVDGWEEGGVFAWVSNTLGPRWGFAAISFGYLQIAIG FIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTARIAKVGF FAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVE ASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFT VLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMYVTAQKNLLPAAFAKMNK NGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVL VLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGDSTDMYVELLV VSFLVVLALPFILYAVHDRKGKANTGVTLEPINSQNAPKGHFFLHPRARSPHYIVMND KKH" misc_feature 1771839..1773344 /gene="xasA" /locus_tag="SF1735" /note="glutamate:gamma-aminobutyrate antiporter; Region: 2A0307_GadC; TIGR00910" /db_xref="CDD:129988" gene 1773484..1774803 /locus_tag="SF1736" /db_xref="GeneID:1024952" CDS 1773484..1774803 /locus_tag="SF1736" /note="Code: S; COG: COG1649" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707604.1" /db_xref="GeneID:1024952" /translation="MDICSRNKKLTIRRPAILVALALLLCSCKSTPPESMVTPPAGSK PPATTQQSSQPMRGIWLATVSRLDWPPVSSVNISNPTSRARVQQQAMIDKLDHLQRLG INTVFFQVKPDGTALWPSKILPWSDLMTGKIGENPGYDPLQFMLDEAHKRGMKVHAWF NPYRVSVNTKPGTIRELNSTLSQQPASVYVQHRDWIRTSGDRFVLDPGIPEVQDWITS IVAEVVSRYPVDGVQFDDYFYTESPGSRLNDNETYRKYGGAFASKADWRRNNTQQLIA KVSHTIKSIKPGVEFGVSPAGVWRNRSHDPLGSDTRGAAAYDESYADTRRWVEQGLLD YIAPQIYWPFSRSAARYDVLAKWWADVVKPTRTRLYIGIAFYKVGEPSKIEPDWMING GVPELKKQLDLNDAVPEISGTILFREDYLNKPQTQQAVSYLQSRWGS" misc_feature 1773646..1774653 /locus_tag="SF1736" /note="Glycosyl hydrolase-like 10; Region: GHL10; pfam02638" /db_xref="CDD:251441" gene 1775180..1776325 /gene="yddV" /locus_tag="SF1737" /db_xref="GeneID:1024899" CDS 1775180..1776325 /gene="yddV" /locus_tag="SF1737" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707605.1" /db_xref="GeneID:1024899" /translation="MEMYFKRMKDEWTGLVEQADPLIRAKAAEIALAHAHYLSIEFYR IVRIDPHAEEFLSNEQVERQLKSAMERWIINVLSAQVDDVERLIQIQHTVAEVHARIG IPVEIVEMGFRVLKKILYPVIFSSDYSAAEKLQVYHFSINSIDIAMEVMTRAFTFSDS SASKEDENYRIFSLLENAEEEKERQIASILSWEIDIIYKVLLDSDLGSSLPLSQADFG LWFNHKGRHYFSGIAEVGHISRLIQDFDGIFNQTMRNTRILNNRSLRVKFLLQIRNTV SQIITLLRELFEEVSRHEVGMDVLTKLLNRRFLPTIFKREIAHANRTGTPLSVLIIDV DKFKEINDTWGHNTGDEILRKVSFLSQKRLVKSKILGAGSSRKLAVS" misc_feature 1775198..1775638 /gene="yddV" /locus_tag="SF1737" /note="Globin sensor domain of Escherichia coli Direct Oxygen Sensing Cyclase and related proteins; coupled to a C-terminal GGDEF domain; Region: GS_EcDosC-like_GGDEF; cd14757" /db_xref="CDD:381271" misc_feature order(1775216..1775224,1775312..1775314,1775492..1775500, 1775504..1775509,1775516..1775518,1775525..1775527, 1775588..1775593,1775600..1775605,1775612..1775614, 1775624..1775626) /gene="yddV" /locus_tag="SF1737" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381271" misc_feature order(1775333..1775335,1775342..1775344,1775372..1775374, 1775381..1775386,1775393..1775395,1775459..1775461, 1775468..1775473,1775486..1775488,1775498..1775500, 1775510..1775515,1775630..1775632) /gene="yddV" /locus_tag="SF1737" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:381271" misc_feature 1775732..>1776250 /gene="yddV" /locus_tag="SF1737" /note="GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants [Signal transduction mechanisms]; Region: GGDEF; COG2199" /db_xref="CDD:441801" misc_feature 1776068..>1776247 /gene="yddV" /locus_tag="SF1737" /note="Class III nucleotidyl cyclases; Region: Nucleotidyl_cyc_III; cl11967" /db_xref="CDD:448371" gene 1776250..1776867 /locus_tag="SF1738" /pseudo /db_xref="GeneID:1024898" misc_feature 1776250..1776867 /locus_tag="SF1738" /note="Similar to Escherichia coli K12 enzyme gi: 1787765 (808 aa). BLAST with identity of 98% in 206 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene 1777125..1777456 /locus_tag="SF1739" /pseudo /db_xref="GeneID:1024909" misc_feature 1777125..1777456 /locus_tag="SF1739" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787763 (194 aa). BLAST with identity of 97% in 111 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene 1777471..1778367 /locus_tag="SF1740" /pseudo /db_xref="GeneID:1024953" misc_feature 1777471..1778367 /locus_tag="SF1740" /note="Similar to Escherichia coli K12 transport protein gi: 1787760 (299 aa). BLAST with identity of 98% in 299 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene 1778364..1779350 /locus_tag="SF1741" /db_xref="GeneID:1024940" CDS 1778364..1779350 /locus_tag="SF1741" /note="Code: EP; COG: COG0444" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_707606.1" /db_xref="GeneID:1024940" /translation="MTQPVLDIQQLHLSFPGFNGDVHALNNVSLQINRGEIVGLVGES GSGKSVTAMLIMRLLPTGSYCVHRGQISLLGEDVLNAREKQLRQWRGARVAMIFQEPM TALNPTRRIGLQMMDVIRHHQPISRREARAKAIALLEEMQIPDAVEVMSRYPFELSGG MRQRVMIAPAFSCEPQLIIAGEPTTALDVTVQLQVLRLLKHKARASGTAVLFISHDMA VVSQLCDSVYVMYAGSVIESGGTADVIHHPRHPYTIGLLQCAPEHGVPRQPLPAIPGT VPNLTHLPDGCAFRDRCYAAGAQCENVPALTACGDNNQHCTCWYPQQEVISV" misc_feature 1778376..1779338 /locus_tag="SF1741" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]; Region: DppD; COG0444" /db_xref="CDD:440213" gene 1779343..1780113 /locus_tag="SF1742" /db_xref="GeneID:1024894" CDS 1779343..1780113 /locus_tag="SF1742" /note="Code: EP; COG: COG1124" /codon_start=1 /transl_table=11 /product="peptide ABC transporter ATP-binding protein" /protein_id="NP_707607.1" /db_xref="GeneID:1024894" /translation="MSDTLLTLRDVHINFPARKNWLGKSTEHVHAINGIDLQIRRGET LGIVGESGCGKSTLAQLLMGMLQPSHGQYIRSGSQRIMQMVFQDPLSSLNPRLPVWRI ITESLWIAKRSSEQQRRALAEELAVQVGIRPEYLDRLPHAFSGGQRQRIAIARALSSQ PDVIVLDEPTSALDISVQAQILNLLVTLQENHGLTYVLISHNVSVIRHMSDRVAVMYL GQIVELGDAQQVLTASAHPYTRLLLDSLPAIDKPLEEE" misc_feature 1779343..1780092 /locus_tag="SF1742" /note="ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]; Region: AppF; COG4608" /db_xref="CDD:443658" gene complement(1780325..1780756) /gene="osmC" /locus_tag="SF1743" /db_xref="GeneID:1024939" CDS complement(1780325..1780756) /gene="osmC" /locus_tag="SF1743" /note="Code: O; COG: COG1764" /codon_start=1 /transl_table=11 /product="osmotically inducible protein" /protein_id="NP_707608.1" /db_xref="GeneID:1024939" /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGEK GTNPEELIGAAHAACFSMALSLMLGEAGFTPTSIDTTADVSLDKVDAGFAITKIALKS EVAVPGIDASTFDGIIQKAKAGCPVSQVLKAEITLDYQLKS" misc_feature complement(1780343..1780744) /gene="osmC" /locus_tag="SF1743" /note="peroxiredoxin, OsmC subfamily; Region: osmo_induc_OsmC; TIGR03562" /db_xref="CDD:274650" mobile_element complement(1780914..1781681) /mobile_element_type="insertion sequence:IS1" gene complement(1780929..1781324) /gene="insB" /locus_tag="SF1744" /db_xref="GeneID:1024936" CDS complement(1780929..1781324) /gene="insB" /locus_tag="SF1744" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707609.1" /db_xref="GeneID:1024936" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1780932..1781321) /gene="insB" /locus_tag="SF1744" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1781351..1781626) /gene="insA" /locus_tag="SF1745" /db_xref="GeneID:1024907" CDS complement(1781351..1781626) /gene="insA" /locus_tag="SF1745" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707610.1" /db_xref="GeneID:1024907" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1781354..1781605) /gene="insA" /locus_tag="SF1745" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1781814..1783511 /gene="sfcA" /locus_tag="SF1746" /db_xref="GeneID:1023372" CDS 1781814..1783511 /gene="sfcA" /locus_tag="SF1746" /note="Code: C; COG: COG0281" /codon_start=1 /transl_table=11 /product="malate dehydrogenase" /protein_id="NP_707611.2" /db_xref="GeneID:1023372" /translation="MEPKTKKQRSLYIPYAGPVLLEFPLLNKGSAFSMEERRNFNLLG LLPEVVETIEEQAERAWIQYQGFKTEIDKHIYLRNIQDTNETLFYRLVNNHLDEMMPV IYTPTVGAACERFSEIYRRSRGVFISYQNRHNMDDILQNVPNHNIKVIVVTDGERILG LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRNPRI TDDEYYEFVDEFIQAVKQRWPDVLLQFEDFAQKNAMPLLNRYRNEICSFNDDIQGTAA VTVGTLIAASRAAGGQLSEKKIVFLGAGSAGCGIAEMIIAQTQREGLSEEAARQKVFM VDRFGLLTDKMPNLLPFQTKLVQKRENLSDWDTDSDVLSLLDVVRNVKPDILIGVSGQ TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFNPVV WKDKIYPIAQCNNAFIFPGIGLGVIASGASRITDEMLMSASETLAQYSPLVLNGEGLV LPELKDIQKVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWQAEYRDYRRTSI" misc_feature 1781814..1783502 /gene="sfcA" /locus_tag="SF1746" /note="oxaloacetate-decarboxylating malate dehydrogenase; Region: PRK13529" /db_xref="CDD:237414" gene 1783645..1784655 /gene="adhP" /locus_tag="SF1747" /db_xref="GeneID:1024935" CDS 1783645..1784655 /gene="adhP" /locus_tag="SF1747" /note="Code: R; COG: COG1064" /codon_start=1 /transl_table=11 /product="ethanol-active dehydrogenase/acetaldehyde-active reductase" /protein_id="NP_707612.1" /db_xref="GeneID:1024935" /translation="MKTAVVTKDHHVDVTDKTLRSLKHGEALLKMECCGVCHTDLHVK NGDFGDKTGVILGHEGIGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNSGNETL CRSVKNAGYSVDGGMEEECIVVADYAVKVPDGLDSAAPSSITCAGVTTYKAVKLSKIR PGQWIAIYGLGGLGNLALQYAKNVFNAKVIAIDVNDEQLKLATEMDADLAINSRTEDA AKIVQEKTGGAHAAVVTAVAKAAFNSAVDAVRAGGRVVAVGLPPESMSLDIPRLVLDG IEVVGSLVGTRQDLTEAFQFAAEGKVVPKVALRPLADINTIFTEMEEGKIRGRMVIDF RH" misc_feature 1783645..1784652 /gene="adhP" /locus_tag="SF1747" /note="ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional; Region: PRK09422" /db_xref="CDD:181842" gene 1784723..1785085 /gene="yddM" /locus_tag="SF1748" /db_xref="GeneID:1024914" CDS 1784723..1785085 /gene="yddM" /locus_tag="SF1748" /note="Code: N; COG: COG3093" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707613.1" /db_xref="GeneID:1024914" /translation="MDYCCVGRNNNDSVPREVTLLRVKTLMKMANHPRPGDIIQESLD ELNVSLREFARAMEIAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQNAWSL AEAEKTVVVSRLRRLVTQ" misc_feature 1784813..1785043 /gene="yddM" /locus_tag="SF1748" /note="addiction module antidote protein, HigA family; Region: antidote_HigA; TIGR02607" /db_xref="CDD:274228" gene complement(1785313..1785966) /gene="fdnI" /locus_tag="SF1749" /db_xref="GeneID:1024930" CDS complement(1785313..1785966) /gene="fdnI" /locus_tag="SF1749" /note="Code: C; COG: COG2864" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-N subunit gamma" /protein_id="NP_707614.2" /db_xref="GeneID:1024930" /translation="MSKSKMIVRTKFIDRACHWTVVICFFLVALSGISFFFPTLQWLT QTFGTPQMGRILHPFFGIAIFVALMFMFVRFVHHNIPDKKDIPWLLNIVEVLKGNEHK VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI ILIHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGI" misc_feature complement(1785316..1785966) /gene="fdnI" /locus_tag="SF1749" /note="formate dehydrogenase-N subunit gamma; Provisional; Region: PRK10179" /db_xref="CDD:182289" gene complement(1785959..1786843) /gene="fdnH" /locus_tag="SF1750" /db_xref="GeneID:1024947" CDS complement(1785959..1786843) /gene="fdnH" /locus_tag="SF1750" /note="Code: C; COG: COG0437" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-N iron-sulfur subunit beta" /protein_id="NP_707615.1" /db_xref="GeneID:1024947" /translation="MAMETQDIIKRSATNSITPPSQVRDYKAEVAKLIDVSTCIGCKA CQVACSEWNDIRDEVGHCVGVYDNPADLSAKSWTVMRFSETEQNGKLEWLIRKDGCMH CEDPGCLKACPSAGAIIQYANGIVDFQSENCIGCGYCIAGCPFNIPRLNKEDNRVYKC TLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELAEQRVAKLKARGYEHAGVYNPEG VGGTHVMYVLHHADQPELYHGLPKDPKIDTSVSLWKGALKPLAAAGFIATFAGLIFHY IGIGPNKEVDDDEEDHHE" misc_feature complement(1785974..1786825) /gene="fdnH" /locus_tag="SF1750" /note="formate dehydrogenase, beta subunit, Fe-S containing; Region: FDH-beta; TIGR01582" /db_xref="CDD:273705" gene complement(1786856..1789903) /gene="fdnG" /locus_tag="SF1751" /db_xref="GeneID:1027797" CDS complement(1786856..1789903) /gene="fdnG" /locus_tag="SF1751" /note="Code: C; COG: COG0243" /codon_start=1 /transl_except=(pos:complement(1789316..1789318),aa:Sec) /transl_table=11 /product="formate dehydrogenase-N subunit alpha" /protein_id="NP_707616.1" /db_xref="GeneID:1027797" /translation="MDVSRRQFFKICAGGMAGTTVAALGFAPKQALAQARNYKLLRAK EIRNTCTYCSVGCGLLMYSLGDGAKNAREAIYHIEGDPDHPVSRGALCPKGAGLLDYV NSENRLRYPKYRAPGSDKWQRISWEEAFSRIAKLMKADRDANFIEKNEQGVTVNRWLS TGMLCASGASNETGMLTQKFARSLGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIR SGTDITFLSGILRYLIENNKINAEYVKHYTNASLLVRDDFAFEDGLFSGYDAEKRQYD KSSWNYQFDENGYAKRDETLTHPRCVWNLLKAHVSRYTPDVVENICGTPKADFLKVCE VLASTSAPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN IQGLTDLGLLSTSLPGYLTLPSEKQVDLQSYLEANTPKATLADQVNYWSNYPKFFVSL MKSFYGDAAQKENNWGYDWLPKWDQTYDVIKYFNMMDEGKVTGYFCQGFNPVASFPDK NKVVSCLSKLKYMVVIDPLVTETSTFWQNHGESNDVDPASIQTEVFRLPSTCFAEEDG SIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHHLRELYQAEGGKGVEPLMKMSWNY KQPHEPQSDEVAKENNGYALEDLYDANGVLIAKKGQLLSSFAHLRDDGTTASSCWIYT GSWTEQGNQMANRDNSDPSGLGNTLGWAWAWPLNRRVLYNRASADINGKPWDPKRMLI QWNGSKWTGNDIPDFGNAAPGTPTGPFIMQPEGMGRLFAINKMAEGPFPEHYEPIETP LGTNPLHPNVVSNPVVRLYEQDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIA QPEQFVEISETQAAAKGINNGDRVTVSSKRGFIRAVAVVTRRLKPLNVNGQQVETVGI PIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA" misc_feature complement(1786862..1789900) /gene="fdnG" /locus_tag="SF1751" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:447860" misc_feature complement(order(1789187..1789192,1789628..1789630, 1789733..1789735,1789745..1789750,1789754..1789756)) /gene="fdnG" /locus_tag="SF1751" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:239153" misc_feature complement(order(1787957..1787959,1788053..1788055, 1788143..1788145,1788152..1788160,1788218..1788220, 1788230..1788238,1788560..1788565,1788659..1788664, 1788671..1788679,1789064..1789066,1789070..1789072, 1789121..1789129,1789196..1789201,1789208..1789210, 1789214..1789216,1789316..1789318,1789328..1789330, 1789622..1789624)) /gene="fdnG" /locus_tag="SF1751" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:239153" gene 1790135..1791016 /gene="yddG" /locus_tag="SF1752" /db_xref="GeneID:1024943" CDS 1790135..1791016 /gene="yddG" /locus_tag="SF1752" /note="Code: GER; COG: COG0697" /codon_start=1 /transl_table=11 /product="aromatic amino acid exporter" /protein_id="NP_707617.1" /db_xref="GeneID:1024943" /translation="MTRQKATLIGLIAIVLWSTMVGLIRGVSEGLGPVGGAAAIYSLS GLLLIFTVGFPRIRQIPKGYLLAGSLLFVSYEIYLALSLGYAATRHQAIEVGMVNYLW PSLTILFAILFNGQKTNWLIVPGLLLALVGVCWVLGGENGLHYDEIINNITTSPLSYF LAFIGAFIWAAYCTVTNKYARGFNGITVFVLLTGACLWIYYFLTPQPEMVFSTPVMIK LISAAFTLGFAYTAWNVGILHGNVTIMAVGSYFTPVLSSALAAVLLSAPLSFSFWQGA LMVCGGSLLCWLATRRG" misc_feature 1790138..1791010 /gene="yddG" /locus_tag="SF1752" /note="aromatic amino acid efflux DMT transporter YddG; Region: PRK11689" /db_xref="CDD:183277" mobile_element complement(1791204..1791971) /mobile_element_type="insertion sequence:IS1" gene complement(1791219..1791614) /gene="insB" /locus_tag="SF1753" /db_xref="GeneID:1024933" CDS complement(1791219..1791614) /gene="insB" /locus_tag="SF1753" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707618.1" /db_xref="GeneID:1024933" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(1791222..1791611) /gene="insB" /locus_tag="SF1753" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1791641..1791916) /gene="insA" /locus_tag="SF1754" /db_xref="GeneID:1024910" CDS complement(1791641..1791916) /gene="insA" /locus_tag="SF1754" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707619.1" /db_xref="GeneID:1024910" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<1791644..1791895) /gene="insA" /locus_tag="SF1754" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1792048..1793148 /locus_tag="SF1755" /db_xref="GeneID:1026460" CDS 1792048..1793148 /locus_tag="SF1755" /note="Code: M; COG: COG3203" /codon_start=1 /transl_table=11 /product="porin" /protein_id="NP_707620.1" /db_xref="GeneID:1026460" /translation="MKLKIVAVVVTGLLAANVAHAAEVYNKDGNKLDLYGKVTALRYF TDDKRDDGDKTYARLGFKGETQINDQMIGFGHWEYDFKGYNDEANGSRGNKTRLAYAG LKISEFGSLDYGRNYGVGYDIGSWTDMLPEFGGDTWSQKDVFMTYRTTGLATYRNYDF FGLIEGLNFAAQYQGKNKRTDNSHLYGADDTRANGDGFGISSTYVYDGFGIGAVYTKS DRTNAQERAAANPLNASGKNAELWATGIKYDANNIYFAANYDETLNMTTYGDGYISNK AQSFEVVAQYQFDFGLRPSLAYLKSKGRDLGRYADQDMIEYIDVGATYFFNKNMSTYV DYKINLIDESDFTRTVDIRTDNIVATGITYQF" misc_feature 1792087..1793145 /locus_tag="SF1755" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" misc_feature order(1792135..1792137,1792141..1792143,1792159..1792161, 1792165..1792173,1792234..1792248,1792264..1792266, 1792270..1792278,1792282..1792284,1792288..1792299, 1792333..1792338,1792342..1792356,1792384..1792392, 1792489..1792491,1792495..1792500,1793023..1793028, 1793035..1793037,1793131..1793133,1793137..1793139, 1793143..1793145) /locus_tag="SF1755" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238208" misc_feature order(1792156..1792158,1792219..1792221,1792336..1792338, 1792429..1792431,1792489..1792491) /locus_tag="SF1755" /note="eyelet of channel [active]" /db_xref="CDD:238208" gene 1793312..1793797 /locus_tag="SF1756" /db_xref="GeneID:1024937" CDS 1793312..1793797 /locus_tag="SF1756" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707621.1" /db_xref="GeneID:1024937" /translation="MIMTNINTACVKNNASYQLNNALPNKETISSNFCERLEQWGNKS VNNGEERAIAVERIKEAYNSNMASLDLSYLDLSELPPIPSTVNTLNLENNCLTCLDLA DNASLVNINLSVNKINTITFPKEPKLENIYINHNNLESLDLKNQHSLVNLEAQNNSLK K" misc_feature <1793501..>1793794 /locus_tag="SF1756" /note="type III secretion system effector E3 ubiquitin transferase SlrP; Region: PRK15370" /db_xref="CDD:185268" misc_feature 1793507..1793566 /locus_tag="SF1756" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 1793567..1793629 /locus_tag="SF1756" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 1793630..1793692 /locus_tag="SF1756" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 1793693..1793755 /locus_tag="SF1756" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" gene 1793907..1795133 /locus_tag="SF1757" /pseudogene="unknown" /db_xref="GeneID:1024934" mobile_element 1795129..1795896 /mobile_element_type="insertion sequence:IS1" gene 1795184..1795459 /gene="insA" /locus_tag="SF1758" /db_xref="GeneID:1024931" CDS 1795184..1795459 /gene="insA" /locus_tag="SF1758" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707623.1" /db_xref="GeneID:1024931" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 1795205..>1795456 /gene="insA" /locus_tag="SF1758" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1795486..1795881 /gene="insB" /locus_tag="SF1759" /db_xref="GeneID:1024918" CDS 1795486..1795881 /gene="insB" /locus_tag="SF1759" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707624.1" /db_xref="GeneID:1024918" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 1795489..1795878 /gene="insB" /locus_tag="SF1759" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 1796339..1797727 /gene="narU" /locus_tag="SF1760" /db_xref="GeneID:1024946" CDS 1796339..1797727 /gene="narU" /locus_tag="SF1760" /note="Code: P; COG: COG2223" /codon_start=1 /transl_table=11 /product="nitrate/nitrite transport protein NarU" /protein_id="NP_707625.2" /db_xref="GeneID:1024946" /translation="MALQNEKNSRYLLRDWKPENPAFWENKGKHIARRNLWISVSCLL LAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRW PVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFAGANFASSMGNISFFFPKAK QGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWV PLLAIATIAAWSGMNDIASSRASIADQLPVLQRLHLWLLSLLYLATFGSFIGFSAGFA MLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLF LTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQA QREAVTETAATLGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLT WLVYGRRKFSQK" misc_feature 1796339..1797724 /gene="narU" /locus_tag="SF1760" /note="nitrate/nitrite transport protein NarU; Provisional; Region: PRK15034" /db_xref="CDD:184994" misc_feature order(1796474..1796479,1796486..1796491,1796498..1796500, 1796597..1796599,1796762..1796767,1796771..1796779, 1796786..1796788,1796843..1796845,1796852..1796857, 1796864..1796866,1797119..1797121,1797128..1797133, 1797140..1797148,1797155..1797157,1797233..1797235, 1797245..1797247,1797410..1797415,1797425..1797427, 1797437..1797439,1797548..1797550,1797557..1797562, 1797569..1797574,1797581..1797583) /gene="narU" /locus_tag="SF1760" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340899" gene 1797752..1801549 /gene="narZ" /locus_tag="SF1761" /pseudo /db_xref="GeneID:1024923" misc_feature 1797752..1801549 /gene="narZ" /locus_tag="SF1761" /note="'Similar to Escherichia coli K12 cryptic nitrate reductase 2, alpha subunit ref: NP_415985.1 (1246 aa). BLAST with identity of 100% in 1266 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene 1801546..1802478 /locus_tag="SF1762" /db_xref="GeneID:1024968" CDS 1801546..1802478 /locus_tag="SF1762" /codon_start=1 /transl_table=11 /product="nitrate reductase 1 subunit beta" /protein_id="NP_707626.1" /db_xref="GeneID:1024968" /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCNNVWTGREGMEYAWFNNV ETKPGIGYPKNWEDQEEWQGGWVRDVNGKIRPRLGSKMGVITKIFANPVVPQQIDDYY EPFTFDYEHLHSTPEGKHIPTARPRSLIDGKRMDKVIWGPNWEELLGGEFEKRARDRN FEAMQKEMYGQFENTFMMYLPRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCR GWRLCISGCPYKKIYFNWKSGKSEKCIFCYPRIESGQPTVCSETCVGRIRYLGVLLYD ADRIEEASSTEREVDLYRVGSLTAAACHGLQLPL" misc_feature 1801546..>1802427 /locus_tag="SF1762" /note="Nitrate reductase beta subunit [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NarY; COG1140" /db_xref="CDD:440755" mobile_element 1802425..1804253 /mobile_element_type="insertion sequence:IS91" gene 1802456..1802878 /locus_tag="SF1763" /db_xref="GeneID:1024929" CDS 1802456..1802878 /locus_tag="SF1763" /codon_start=1 /transl_table=11 /product="insertion sequence IS91 protein" /protein_id="NP_707627.1" /db_xref="GeneID:1024929" /translation="MVCNYRYKNRQCHCLSGGYMARSAKPRKRKPASQRSKLPRYVVK LHEDDFFDEEDAEVLRFDSFDDAVECCADLNIPFFVDAGNKKLVFWFVRVDDEGYPEI ARCTEREFATILAGISAGGMYCPECGTVHWPDGVAPPF" gene 1802878..1804065 /locus_tag="SF1764" /db_xref="GeneID:1024928" CDS 1802878..1804065 /locus_tag="SF1764" /codon_start=1 /transl_table=11 /product="insertion sequence IS91 transposase" /protein_id="NP_707628.1" /db_xref="GeneID:1024928" /translation="MLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTT LMGYTQWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPYCPWQHIVF TLPCQYWSLVFHNRWLLAEMSRIAADVILEICHQADVEPGIFTVIHTWGRDQQWHPHI HLSTTAGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPDLVMPDALAAEGSSKR EWNRFLDTHYRRGWNVNVSRVMDNATHVAVYFGSYLKKPPVPMSRLEHYAGQDEIGLR YNSHRTKREEYLLMSGDEFMERFSWHVADKGFRMVRYYGFLSPAKRRLLEEVVYIITE TVRKTAMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMR WCG" misc_feature 1802890..1804005 /locus_tag="SF1764" /note="IS91 family transposase; Region: transpos_IS91; NF033538" /db_xref="CDD:468069" gene complement(1804336..1805058) /locus_tag="SF1765" /db_xref="GeneID:1025010" CDS complement(1804336..1805058) /locus_tag="SF1765" /note="Code: K; COG: COG1802" /codon_start=1 /transl_table=11 /product="colanic acid/biofilm transcriptional regulator" /protein_id="NP_707629.1" /db_xref="GeneID:1025010" /translation="MNSFCHAGRVGQKTREGIKMPGTGKMKHVSLTLQVENDLKHQLS IGALKPGARLITKNLAEQLGMSITPVREALLRLVSVNALSVAPAQAFTVPEVRQSQLD EINRIRYELELMAVALAVENLSSQDIAELQELLGKLQQAQEKGDMEQIINVNRLFRLA IYHRSNMPILCEMIEQLWIRMGPALHYLYEAINPAELRERIENYHLLLAALKAKDKEG CKHCLAEIMQQNIAILYQQYNR" misc_feature complement(1804339..1805001) /locus_tag="SF1765" /note="GntR family transcriptional regulator; Region: PRK11414" /db_xref="CDD:183126" gene complement(1805163..1806359) /gene="yncB" /locus_tag="SF1766" /db_xref="GeneID:1024921" CDS complement(1805163..1806359) /gene="yncB" /locus_tag="SF1766" /note="Code: R; COG: COG2130" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_707630.1" /db_xref="GeneID:1024921" /translation="MLQRGCDGCKQNQSREPATIDGFMPKAQESIMGQQKQRNRRWVL PSRPHGAPVPENFRLEEDDVATPGEGQVLLRTVYLSLDPYMRGRMSDEPSYSPPVDIG GVMVGGTVSRVVESNHPDYQPGDWVLGYSGWQDYDISSGDDLVKLGDHPQNPSWSLGV LGMPGFTAYMGLLDIGQPKEGETLVVAAATEPVGATVGQIGKLKGCRVVGVAGGAEKC RHATEVLGFDVCLDHHADDFAEQLAKACPKGIDIYYENVGGKVFDAVLPLLNTSARIP VCGLVSSYNATELPPGPDRLPLLMATVLKKRIRLQGFIIAQDYGHRIHEFQKEMGQWV KEDKIHYREDITDGLENAPQTFIGLLKGKNFGKVVIRVAGDDKSFNGGVSRHKNPGKK LIFSFN" misc_feature complement(1805244..1806245) /gene="yncB" /locus_tag="SF1766" /note="NADPH-dependent curcumin reductase CurA [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]; Region: CurA; COG2130" /db_xref="CDD:441733" mobile_element complement(1806385..1807715) /mobile_element_type="insertion sequence:IS2" gene complement(1806396..1807301) /locus_tag="SF1767" /db_xref="GeneID:1024927" CDS complement(1806396..1807301) /locus_tag="SF1767" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_707631.1" /db_xref="GeneID:1024927" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREVLHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(1806399..1807301) /locus_tag="SF1767" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(1807259..1807669) /locus_tag="SF1768" /db_xref="GeneID:1024966" CDS complement(1807259..1807669) /locus_tag="SF1768" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_707632.3" /db_xref="GeneID:1024966" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMKNELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(1807262..1807624) /locus_tag="SF1768" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 1807783..1808301 /locus_tag="SF1769" /db_xref="GeneID:1024956" CDS 1807783..1808301 /locus_tag="SF1769" /note="Code: M; COG: COG1247" /codon_start=1 /transl_table=11 /product="resistance protein" /protein_id="NP_707633.2" /db_xref="GeneID:1024956" /translation="MSIRFARKADCAAIAEIYNHAVLYTAAIWNDQTVDADNRIAWFE ARTIAGYPVLVSEEDGVVTGYASFGDWRSFDGFRHTVEHSVYVHPDHQGKGLGRKLLS RLIDEARDCGKHVMVAGIESQNQASLHLHQSLGFVVTAQMPQVGTKFGHWLDLTFMQL QLDERTEPDAIG" misc_feature 1807783..1808268 /locus_tag="SF1769" /note="L-amino acid N-acyltransferase MnaT [Amino acid transport and metabolism]; Region: MnaT; COG1247" /db_xref="CDD:440860" gene 1808298..1808747 /locus_tag="SF1770" /db_xref="GeneID:1024967" CDS 1808298..1808747 /locus_tag="SF1770" /note="Code: S; COG: COG3238" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707634.1" /db_xref="GeneID:1024967" /translation="MNQSLTLAFLIAAGIGLVVQNTLMARITQTSSTILIAMLLNSLV GIVLFVSILWFKQGMAGFGELVSSVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV LVASQLIGGLVLDIFRSHGVPLRALFGPICGAILLVVGAWLVARRSF" misc_feature 1808310..1808726 /locus_tag="SF1770" /note="Putative inner membrane exporter, YdcZ; Region: DMT_YdcZ; pfam04657" /db_xref="CDD:428052" gene complement(1808748..1808981) /locus_tag="SF1771" /db_xref="GeneID:1024926" CDS complement(1808748..1808981) /locus_tag="SF1771" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707635.1" /db_xref="GeneID:1024926" /translation="MSHLDEVIARVDAAIEESVIAHMNELLIALSDDAELSREDRYTQ QQRLRTAIAHHGRKHKEDMEARHEQLTKGGTIL" misc_feature complement(1808754..1808981) /locus_tag="SF1771" /note="Protein of unknown function (DUF2526); Region: DUF2526; pfam10735" /db_xref="CDD:402390" gene complement(1809067..1809315) /locus_tag="SF1772" /db_xref="GeneID:1024962" CDS complement(1809067..1809315) /locus_tag="SF1772" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707636.1" /db_xref="GeneID:1024962" /translation="MKKLDARQKMAHICARFIHMAGRPYMFLYQHMLVFYAVMAAIAF LITWFLSHDKKRIRFLSAFLVGATWPMSFPVALLFSLF" misc_feature complement(1809070..1809231) /locus_tag="SF1772" /note="Toxin GhoT_OrtT; Region: Toxin_GhoT_OrtT; pfam10753" /db_xref="CDD:431472" gene complement(1809932..1810741) /locus_tag="SF1773" /db_xref="GeneID:1024932" CDS complement(1809932..1810741) /locus_tag="SF1773" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="NP_707637.1" /db_xref="GeneID:1024932" /translation="MKVQLYKFTEDKNKTLTFRWTKKHFEFCMDNKIFLNHKGKKSYK ERNLFLFSKGDKITIEDNVIAEEYSTMPVKNFSSVGAFSFPTCHFSGNIRIGRFCSIA SNVKIMGGNHPLNRFTTHMMTYNGEFDKFAMSEFERSWTLKPFITKPENPIIGNDVWI GNDVVLKGGIAIGDGAVIAANSVVTKDVPPYAIVAGVPAKIIRFRFDSNVIDELLRIK WWNYNYSDLPDNNKCDDINYFVEEMNRLISNGNIQERDYKKFNLSEVFRGL" misc_feature complement(1810076..1810516) /locus_tag="SF1773" /note="Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and...; Region: LbH_XAT; cd03349" /db_xref="CDD:100040" misc_feature complement(order(1810127..1810129,1810151..1810153, 1810199..1810201,1810256..1810258,1810265..1810267, 1810271..1810273,1810376..1810378,1810382..1810384, 1810388..1810390,1810403..1810408,1810442..1810444, 1810490..1810492,1810496..1810498)) /locus_tag="SF1773" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100040" misc_feature complement(order(1810136..1810138,1810148..1810150, 1810154..1810159,1810163..1810165,1810187..1810189, 1810202..1810207,1810256..1810258,1810265..1810267, 1810370..1810375,1810400..1810402,1810406..1810411, 1810484..1810486,1810490..1810492)) /locus_tag="SF1773" /note="active site" /db_xref="CDD:100040" misc_feature complement(order(1810370..1810375,1810409..1810411, 1810484..1810486,1810490..1810492)) /locus_tag="SF1773" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100040" misc_feature complement(order(1810136..1810138,1810148..1810150, 1810154..1810159,1810163..1810165,1810187..1810189, 1810202..1810207,1810241..1810243,1810256..1810258, 1810265..1810267,1810298..1810300,1810400..1810402, 1810406..1810408)) /locus_tag="SF1773" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100040" gene complement(1810951..1812375) /locus_tag="SF1774" /db_xref="GeneID:1024951" CDS complement(1810951..1812375) /locus_tag="SF1774" /note="Code: C; COG: COG1012" /codon_start=1 /transl_table=11 /product="gamma-aminobutyraldehyde dehydrogenase" /protein_id="NP_707638.1" /db_xref="GeneID:1024951" /translation="MQHKLLINGERVSGEGEKQPVYNPATGDVLLEIAEVSAEQVDAA VRAADAAFAEWGQTTPKARAECLLKLADVIEENGQVFAELESRNCGKPLHSAFNDEIP AIVDVFRFFAGAARCLNGLAAGEYLEGHTSMIRRDPLGVVASIAPWNYPLMMAAWKLA PALAAGNCVVLKPSEITPLTALKLAELAKDIFPAGVINILFGRGKTVGDPLTGHPKVR MVSLTGSIATGEHIISHTASSIKRTHMELGGKAPVIVFDDADIEAVVEGVRTFGYYNA GQDCTAACRIYAQKGIYDTLVEKLGAAVATLKSGAPDDESTELGPLSSLAHLERVSKA VEEAKATGHIKVITGGEKRKGNGYYYAPTLLAGALQDDAIVQKEVFGPVVSVTPFDNE EQVVNWANDSQYGLASSVWTKDVGRAHRVSARLQYGCTWVNTHFMLVSEMPHGGQKLS GYGKDMSLYGLEDYTVVRHVMVKH" misc_feature complement(1810957..1812372) /locus_tag="SF1774" /note="NAD(P)+-dependent aldehyde dehydrogenase superfamily; Region: ALDH-SF; cl11961" /db_xref="CDD:448367" misc_feature complement(order(1810960..1810977,1811014..1811016, 1811029..1811034,1811047..1811055,1811080..1811097, 1811101..1811103,1811110..1811112,1811116..1811121, 1811128..1811142,1811635..1811637,1811656..1811658, 1811677..1811679,1811686..1811688,1811722..1811724, 1811971..1811976,1811992..1811994,1811998..1812003, 1812007..1812018,1812028..1812030,1812058..1812060, 1812199..1812201)) /locus_tag="SF1774" /note="tetrameric interface [polypeptide binding]; other site" /db_xref="CDD:143411" misc_feature complement(order(1811242..1811244,1811395..1811397, 1811536..1811538,1811632..1811634,1811638..1811640, 1811683..1811685,1811692..1811694,1811701..1811709, 1811749..1811751,1811764..1811766,1811851..1811856, 1811860..1811862,1811932..1811934,1811938..1811943)) /locus_tag="SF1774" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143411" misc_feature complement(order(1811536..1811538,1811545..1811547, 1811638..1811640,1811929..1811931)) /locus_tag="SF1774" /note="catalytic residues [active]" /db_xref="CDD:143411" misc_feature complement(order(1811062..1811064,1811539..1811541)) /locus_tag="SF1774" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143411" gene complement(1812397..1813191) /locus_tag="SF1775" /db_xref="GeneID:1024955" CDS complement(1812397..1813191) /locus_tag="SF1775" /note="Code: E; COG: COG1177" /codon_start=1 /transl_table=11 /product="ABC transporter permease" /protein_id="NP_707639.1" /db_xref="GeneID:1024955" /translation="MHSERAPFFLKLAAWGGVVFLHFPILIIAAYAFNTEDAAFSFPP QGLTLRWFSVAAQRSDILDAVTLSLKVAALATLIALVLGTLAAAALWRRDFFGKNAIS LLLLLPIALPGIVTGLALLTAFKTINLEPGFFTIVVGHATFCVVVVFNNVIARFRRTS WSLVEASMDLGANGWQTFRYVVLPNLSSALLAGGMLAFALSFDEIIVTTFTAGHERTL PLWLLNQLGRPRDVPVTNVVALLVMLVTTLPILGAWWLTREGDNGQ" misc_feature complement(1812409..1813179) /locus_tag="SF1775" /note="ABC-type spermidine/putrescine transport system, permease component II [Amino acid transport and metabolism]; Region: PotC; COG1177" /db_xref="CDD:440790" gene complement(1813181..1813528) /locus_tag="SF1776" /pseudo /db_xref="GeneID:1024961" misc_feature complement(1813181..1813528) /locus_tag="SF1776" /note="Similar to Escherichia coli K12 transport system permease gi: 1787713 (314 aa). BLAST with identity of 100% in 115 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element 1813529..1813654 /note="partial" /mobile_element_type="insertion sequence:IS91" mobile_element 1813662..1813972 /note="partial" /mobile_element_type="insertion sequence:IS1294" gene 1813871..1815217 /locus_tag="SF1777" /db_xref="GeneID:1024917" CDS 1813871..1815217 /locus_tag="SF1777" /codon_start=1 /transl_table=11 /product="insertion sequence IS91 transposase" /protein_id="NP_707640.1" /db_xref="GeneID:1024917" /translation="MQREKTPEWREKQKSSRGIRRGQRYRLVFQFPIRVLPGVWHGSL AGRSRPALLMLPRFADIFQQGNRWLNWLEKQPEGAVRPVVIESVTKIMACGTTLMGYT QWCCSSPDCCHTKKVCFRCKSRSCPHCGVKAGAQWIQYLLSLVPYCPWQHIVFTLPCQ YWSLVFHNRWLLAEMSRIAADVILEICHQADVEPGIFTVIHTWGRDQQWHPHIHLSTT AGGVTSGHTWKNLHFYARKVMSMWRYRITRLLSRKYPDLVMPDALAAEGSSKREWNRF LDTHYRRGWNVNVSRVMDNATHVAVYFGSYLKKPPVPMSRLEHYAGQDEIGLRYNSHR TKREEYLLMSGDEFMERFSWHVADKGFRMVRYYGFLSPAKRRLLEEVVYIITETVRKT AMQITWRGMYQRLLKVDPLKCVLCGSQMRFTGLKRGYRLAEQVLMHEPLARMRWCG" misc_feature 1814042..1815157 /locus_tag="SF1777" /note="IS91 family transposase; Region: transpos_IS91; NF033538" /db_xref="CDD:468069" mobile_element 1813972..1815405 /note="partial" /mobile_element_type="insertion sequence:IS91" gene complement(1815406..1816298) /locus_tag="SF1778" /pseudo /db_xref="GeneID:1024969" misc_feature complement(1815406..1816298) /locus_tag="SF1778" /note="Similar to Escherichia coli K12 virulence protein gi: 1787702 (403 aa). BLAST with identity of 98% in 297 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene 1816306..1816812 /locus_tag="SF1778a" /pseudogene="unknown" /db_xref="GeneID:16608330" gene complement(1816781..1817487) /locus_tag="SF1779" /pseudogene="unknown" /db_xref="GeneID:1024965" gene complement(1817790..1818383) /gene="tehB" /locus_tag="SF1780" /db_xref="GeneID:1024948" CDS complement(1817790..1818383) /gene="tehB" /locus_tag="SF1780" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="tellurite resistance protein TehB" /protein_id="NP_707642.1" /db_xref="GeneID:1024948" /translation="MNIRDENYFTDKYELTRTHSEVLEAVKVVKPGKTLDLGCGNGRN SLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDGQYDFILST VVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFTFAFKEGELRRYY EGWERVKYNEDVGELHRTDANGNRIKLRFATMLARKK" misc_feature complement(1817796..1818383) /gene="tehB" /locus_tag="SF1780" /note="tellurite resistance methyltransferase TehB; Region: PRK11207" /db_xref="CDD:183040" gene complement(1818380..1819372) /gene="tehA" /locus_tag="SF1781" /db_xref="GeneID:1024945" CDS complement(1818380..1819372) /gene="tehA" /locus_tag="SF1781" /note="Code: P; COG: COG1275" /codon_start=1 /transl_table=11 /product="potassium-tellurite ethidium and proflavin transporter" /protein_id="NP_707643.2" /db_xref="GeneID:1024945" /translation="MQSDKVLNLPAGYFGIVLGTIGMGFAWRYASQVWQVSHWLGDGL VILAMIIWGLLTSAFITRLIRFPHSVLAEVRHPVLSSFVSLFPATTMLVAIGFVPWFR PLAVCMFSFGVVVQLAYAAWQTAGLWRGSHPEEATTPGLYLPTVANNFISAMACGALG YTDAGLVFLGAGVFSWLSLEPVILQRLRSSGELPTALRTSLGIQLAPALVACSAWLSV NGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGLHLGS GSDNGFFHTLAVPLFIFTNFIIAILLIRTFALLMQGKLLVRTERAVLMKAEDKE" misc_feature complement(1818401..1819372) /gene="tehA" /locus_tag="SF1781" /note="potassium-tellurite ethidium and proflavin transporter; Provisional; Region: PRK10764" /db_xref="CDD:236756" misc_feature complement(1818587..1818589) /gene="tehA" /locus_tag="SF1781" /note="gating phenylalanine in ion channel; other site" /db_xref="CDD:187764" gene 1819496..1820476 /locus_tag="SF1782" /db_xref="GeneID:1024963" CDS 1819496..1820476 /locus_tag="SF1782" /note="Code: M; COG: COG1044" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707644.1" /db_xref="GeneID:1024963" /translation="MRKYRLSEEQRAFSYQEDGTKKSVLLRQIIAISDFNDVIAGTAG GWIDRETVLAQEGNCWIYDQNAIAFGGTVISGNTRITGTSVLWGEVYATDNVWIDNSE ISQGAYISDSVTIHDSLVYVQCRIFGHALIDQHSMIVAAQGLTPDHQLLLQIYDRARV SASRIVHQAQIYGDAVVRYAFIEHRAEVFDFASVEGNEENNVWLCDCAKVYGHAQVKA GIEEDAIPTIHYSSQVAEYAIVEGNCVLKHHVLIGGNAVVRGGPILLDEHVVIQGESR ITGAVIIENHVELTDHAVVEAFDGDTVHVRGPKVINGEERITRTPLAGLL" misc_feature 1819496..1820473 /locus_tag="SF1782" /note="YdcK family protein; Region: YdcK_fam; NF040481" /db_xref="CDD:439707" gene complement(1820471..1821007) /gene="rimL" /locus_tag="SF1783" /db_xref="GeneID:1024954" CDS complement(1820471..1821007) /gene="rimL" /locus_tag="SF1783" /note="Code: J; COG: COG1670" /codon_start=1 /transl_table=11 /product="ribosomal-protein-L7/L12-serine acetyltransferase" /protein_id="NP_707645.2" /db_xref="GeneID:1024954" /translation="MTETIKVSESLELHAVAESHVTPLYQLICKNKTWLQQSLNWPQF VQSEEDTRKTVQGNVMLHQRGYAKMFMIFKEDELIGVISFNRIEPLNKTAEIGYWLDE SHQGQGIISQALQTLIHHYAQSGELRRFVIKCRVDNPQSNQVALRNGFILEGCLKQAE FLNDAYDDVNLYARIIDS" misc_feature complement(1820474..1821007) /gene="rimL" /locus_tag="SF1783" /note="50S ribosomal protein L7/L12-serine acetyltransferase; Region: PRK10151" /db_xref="CDD:182270" misc_feature complement(order(1820675..1820680,1820708..1820713)) /gene="rimL" /locus_tag="SF1783" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(1821070..1821237) /gene="ydcH" /locus_tag="SF1784" /db_xref="GeneID:1024958" CDS complement(1821070..1821237) /gene="ydcH" /locus_tag="SF1784" /note="Code: S; COG: COG2841" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707646.2" /db_xref="GeneID:1024958" /translation="MSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEML KILQQESVKEV" misc_feature complement(1821073..>1821237) /gene="ydcH" /locus_tag="SF1784" /note="hypothetical protein; Provisional; Region: PRK11415" /db_xref="CDD:183127" gene complement(1821434..1823089) /gene="mdoD" /locus_tag="SF1786" /db_xref="GeneID:1024950" CDS complement(1821434..1823089) /gene="mdoD" /locus_tag="SF1786" /note="Code: P; COG: COG3131" /codon_start=1 /transl_table=11 /product="glucan biosynthesis protein D" /protein_id="NP_707648.1" /db_xref="GeneID:1024950" /translation="MDRRRFIKGSMAMAAVCGTSGIASLFSQAAFAADSDIADGQTQR FDFSILQSMAHDLAQTAWRGAPRPLPDTLATMTPQAYNSIQYDAEKSLWHNVENRQLD AQFFHMGMGFRRRVRMFSVDPATHLAREIHFRPELFKYNDAGVDTKQLEGQSDLGFAG FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDSKEEFPDFTAFW FDTVKPGATTFTVYALLDSASITGAYKFTIHCEKSQVIMDVENHLYARKDIKQLGISP MTSMFSCGTNERRMCDTIHPQIHDSDRLSMWRGNGEWICRPLNNPQKLQFNAYTDNNP KGFGLLQLDRDFSHYQDIMGWYNKRPSLWVEPRNKWGKGTIGLMEIPTTGETLDNIVC FWQPEKAVKAGDEFAFQYRLYWSAQPPVHCPLARVMATRTGMGGFPEGWAPGEHYPEK WARRFAVDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYIEPIDGYRIQFDWYPTSD STDPVDMRMYLRCQGDAISETWLYQYFPPAPDKRQYVDDRVMS" misc_feature complement(1821500..1822957) /gene="mdoD" /locus_tag="SF1786" /note="glucan biosynthesis protein D; Provisional; Region: mdoD; PRK13273" /db_xref="CDD:237327" gene complement(1823314..1824657) /locus_tag="SF1787" /db_xref="GeneID:1026467" CDS complement(1823314..1824657) /locus_tag="SF1787" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707649.1" /db_xref="GeneID:1026467" /translation="MANSITADEIREQFSQAMSAMYQQEVPQYGTLLELVADVNLAVL ENNPQLHEKMVNADELARLNVERHGAIRVGTAQELATLRRMFAIMGMYPVSYYDLSQA GVPVHSTAFRPIDDASLARNPFRVFTSLLRLELIENEILRQKAAEILRQRDIFTPRCR QLLEEYEQQGGFNETQAQEFVQEALETFRWHQLATVDEETYRALHNEHRLIADVVCFP GCHINHLTPRTLDIDRVQSMMPECGIEPKILIEGPPRREVPILLRQTSFKALEETVLF AGQKQGTHTARFGEIEQRGVALTPKGRQLYDDLLRNAGTGQDNLTHQMHLQETFRTFP DSEFLMRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVVAQPITYEDFLPVS AAGIFQSNLGNETQTRSHGNASREAFEQALGCPVLDEFQLYQEAEERSKRRCGLL" misc_feature complement(1823719..1824636) /locus_tag="SF1787" /note="uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ; Region: VOC_YdcJ_like; cd16348" /db_xref="CDD:319958" misc_feature complement(1823326..1823883) /locus_tag="SF1787" /note="Uncharacterized metalloenzyme YdcJ, glyoxalase superfamily [General function prediction only]; Region: YdcJ; COG5383" /db_xref="CDD:444147" gene 1824733..1825797 /locus_tag="SF1788" /db_xref="GeneID:1024944" CDS 1824733..1825797 /locus_tag="SF1788" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_707650.1" /db_xref="GeneID:1024944" /translation="MISPRKHQYYPFCCNIIALIVNNILQSSYHNQTTSLVSDTASFL TSLMEKNSLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSNTLNELEQLTGA RLFERGRQGAQLTLPGEQFLTHAVRVLDAINTAGQSLHRKEGLNNDVVRVGALPTAAL GILPSVIGQFHQQQKETTLQVATMSNPMILAGLKTGEIDIGIGRMSDPELMTGLNYEL LFLESLKLVVRPNHPLLQENVTLSRVLEWPVVVSPEGTAPRQHSDALVQSQGCKIPSG CIETLSTSLSRQLTVEYDYVWFVPSGAVKDDLRHATLVALPVPGHGAGEPIGILTRVD ATFSSGCQLMINAIRKSMPF" misc_feature 1824898..1825779 /locus_tag="SF1788" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature order(1825222..1825227,1825231..1825236,1825243..1825245, 1825255..1825257,1825261..1825281,1825561..1825578, 1825594..1825599,1825603..1825608) /locus_tag="SF1788" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176126" gene complement(1825835..1827475) /gene="trg" /locus_tag="SF1789" /db_xref="GeneID:1024960" CDS complement(1825835..1827475) /gene="trg" /locus_tag="SF1789" /note="Code: N; COG: COG0840" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein III" /protein_id="NP_707651.1" /db_xref="GeneID:1024960" /translation="MNTTPSQRLGFLHHIRLVPLFACILGGILVLFALSSALAGYFLW QADRDQRDVTAEIEIRTGLANSSDFLRSARINMIQAGAASRIAEMEAMKRNIAQAESE IKQSQQGYRAYQNRPVKTPADEAFDTELNQRFQAYITGMQPMLKYAKNGMFEAIINHE SEQIRPLDNAYTDILNKAVKIRSTRANQLAELAHQRTRLGGMFMIGAFVLALVMTLIT FMVLRRIVIRPLQHAAQRIEKIASGDLTMNDEPAGRNEIGRLSRHLQQMQHSLGMTVG TVRQGAEEIYRGTSEISAGNADLSSRTEEQAAAIEQTAASMEQLTATVKQNADNAHHA SKLAQEASIKASDGGQTVSGVVKTMGAISTSSKKISEITAVINSIAFQTNILALNAAV EAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLISESVRLIDLGSDEVATAGKTM STIVDAVASVTHIMQEIAAASDEQSRGITQVSQAISEMDKVTQQNASLVEEASAAAVS LEEQAARLTEAVNVFRLNKHSVSAEPRGAGEPVSFATV" misc_feature complement(1825850..1827442) /gene="trg" /locus_tag="SF1789" /note="Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cl46910" /db_xref="CDD:481250" misc_feature complement(order(1825973..1825975,1825982..1825984, 1825991..1825996,1826003..1826005,1826012..1826017, 1826021..1826026,1826033..1826038,1826042..1826047, 1826054..1826056,1826063..1826068,1826075..1826077, 1826084..1826089,1826096..1826101,1826105..1826110, 1826117..1826119,1826126..1826131,1826138..1826140, 1826147..1826152,1826189..1826194,1826201..1826206, 1826210..1826215,1826222..1826227,1826234..1826236, 1826243..1826248,1826255..1826257,1826264..1826266, 1826276..1826278,1826297..1826299,1826306..1826308, 1826318..1826320,1826327..1826332,1826339..1826341, 1826348..1826350,1826357..1826362,1826369..1826374, 1826381..1826383,1826390..1826395,1826399..1826401, 1826411..1826416,1826420..1826425,1826432..1826434, 1826441..1826446,1826453..1826458,1826465..1826467, 1826474..1826479,1826486..1826488,1826495..1826500, 1826504..1826509,1826516..1826518,1826525..1826530, 1826537..1826542)) /gene="trg" /locus_tag="SF1789" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature complement(1826231..1826332) /gene="trg" /locus_tag="SF1789" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" mobile_element 1827804..1828286 /note="partial" /mobile_element_type="insertion sequence:IS150" gene 1827851..1828333 /locus_tag="SF1790" /db_xref="GeneID:1024957" CDS 1827851..1828333 /locus_tag="SF1790" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion element IS150 protein" /protein_id="NP_707652.1" /db_xref="GeneID:1024957" /translation="MSKPKYPFEKRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVA LYEKHGEKGLIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLK VYEERGEAGLRALKIGTKRNIAISVDPEKAASALKLSKDRRIEVRCTGNSGHYHLFFF " misc_feature 1827875..>1828279 /locus_tag="SF1790" /note="CRISPR-associated protein Csa3, CARF domain [Defense mechanisms]; Region: Csa3; COG3415" /db_xref="CDD:442641" misc_feature 1827878..1828030 /locus_tag="SF1790" /note="Helix-turn-helix domain; Region: HTH_28; pfam13518" /db_xref="CDD:463908" mobile_element complement(1828287..1829550) /mobile_element_type="insertion sequence:IS600" gene complement(1828330..1829148) /locus_tag="SF1791" /db_xref="GeneID:1023383" CDS complement(1828330..1829148) /locus_tag="SF1791" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707653.1" /db_xref="GeneID:1023383" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(1828357..>1829148) /locus_tag="SF1791" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1829184..1829486) /locus_tag="SF1792" /db_xref="GeneID:1024964" CDS complement(1829184..1829486) /locus_tag="SF1792" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="YP_008439253.1" /db_xref="GeneID:1024964" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(1829214..1829486) /locus_tag="SF1792" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element 1829621..1829786 /note="partial" /mobile_element_type="insertion sequence:IS150" gene 1829861..1830010 /locus_tag="SF1792a" /db_xref="GeneID:16608331" CDS 1829861..1830010 /locus_tag="SF1792a" /codon_start=1 /transl_table=11 /product="protein HokB" /protein_id="YP_008439254.1" /db_xref="GeneID:16608331" /translation="MKRNPLVVCLLIICITILAFTLLTRQTLYELRFRDGDKEVAALM ACTSR" misc_feature 1829861..1830007 /locus_tag="SF1792a" /note="small toxic polypeptide; Provisional; Region: PRK09738" /db_xref="CDD:182055" gene complement(1830082..1830255) /gene="ydcA" /locus_tag="SF1793" /db_xref="GeneID:1024949" CDS complement(1830082..1830255) /gene="ydcA" /locus_tag="SF1793" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707655.1" /db_xref="GeneID:1024949" /translation="MKKLALILFMGTLVSFYADAGRKPCSGSKGGISHCTAGGKFVCN DGSISASKKTCTN" misc_feature complement(1830085..1830243) /gene="ydcA" /locus_tag="SF1793" /note="hypothetical protein; Provisional; Region: PRK10040" /db_xref="CDD:182205" gene complement(1830500..1831066) /gene="cybB" /locus_tag="SF1794" /db_xref="GeneID:1025003" CDS complement(1830500..1831066) /gene="cybB" /locus_tag="SF1794" /note="Code: C; COG: COG3038" /codon_start=1 /transl_table=11 /product="cytochrome b(561)" /protein_id="NP_707656.3" /db_xref="GeneID:1025003" /translation="MLTENYVKAGNVMENKYSRLQISIHWLVFLLVIAAYCAMEFRGF FPRSDRPLINMIHVSCGISILVLMVVRLLLRLKYPTPPIIPKPKPMMTGLAHLGHLVI YLLFIALPVIGLVMMYNRGNPWFAFGLTMPYASEANFERVDSLKSWHETLANLGYFVI GLHAAAALAHHYFWKDNTLLRMMPRKRS" misc_feature complement(1830503..1831030) /gene="cybB" /locus_tag="SF1794" /note="cytochrome b561; Provisional; Region: PRK11513" /db_xref="CDD:236921" gene 1831219..1831971 /locus_tag="SF1795" /db_xref="GeneID:1024959" CDS 1831219..1831971 /locus_tag="SF1795" /note="Code: G; COG: COG0057" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase" /protein_id="NP_707657.1" /db_xref="GeneID:1024959" /translation="MSKVGINGFGRIGRLVLRRLLEVKSNIDVVAINDLTSPKILAYL LKHDSNYGPFPWSVDFTEDSLIVDGKSIAVYAEKEAKNIPWKAKGAEIIVECTGFYTS ADKSQAHLDAGAKKVLISAPAGEMKTIVYNVNDDTLDGNDTIVSVASCTTNCLAPMAK ALHDSFGIEVGTMTTIHAYTGTQSLVDGPRGKDLRASRAAAENIIPHTTGAAKAIGLV IPELSGKLKGHAQRVPVKTGSVTELVSILGKK" misc_feature 1831219..>1831968 /locus_tag="SF1795" /note="Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]; Region: GapA; COG0057" /db_xref="CDD:439827" gene 1831968..1832219 /gene="gapC" /locus_tag="SF1796" /db_xref="GeneID:1024986" CDS 1831968..1832219 /gene="gapC" /locus_tag="SF1796" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase" /protein_id="NP_707658.1" /db_xref="GeneID:1024986" /translation="MTAEEVNNALKQATTNNESFGYTDEEIVSSDIIGSHFGSVFDAT QTEITAVGDLQLVKTVAWYDNEYGFVTQLIRTLEKFAKL" misc_feature <1831971..1832192 /gene="gapC" /locus_tag="SF1796" /note="glyceraldehyde-3-phosphate dehydrogenase, type I; Region: GAPDH-I; TIGR01534" /db_xref="CDD:273675" gene complement(1832261..1833700) /gene="aldA" /locus_tag="SF1797" /db_xref="GeneID:1024942" CDS complement(1832261..1833700) /gene="aldA" /locus_tag="SF1797" /note="Code: C; COG: COG1012" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="NP_707659.1" /db_xref="GeneID:1024942" /translation="MSVPVQHPMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQAE DARKAIDAAERAQPEWEALPAIERASWLCKISAGIRERASEISALIVEEGGKIQQLAE VEVAFTADYIDYMAEWARRYEGEIIQSDRPGENILLFKRALGVTTGILPWNFPFFLIA RKMAPALLTGNTIVIKPSEFTPNNAIAFAKIVDEIGLPRGVFNLVLGRGETVGQELAG NPKVAMVSMTGSVSAGEKIMATAAKNITKVCLELGGKAPAIVMDDADLELAVKAIVDS RVINSGQVCNCAERVYVQKGIYDQFVNLLGEALQAVQFGNPAERNDIAMGPLINAAAL ERVEQKVARAVEEGARVALGGKAVEGKGYYYPPTLLLDVRQEMSIMHEETFGPVLPVV AFDTLEDAISMANDSDYGLTSSIYTQNLNVAMKAIKGLKFGETYINRENFEAMQGFHA GWRKSGIGGADGKHGLHEYLQTQVVYLQS" misc_feature complement(1832264..1833487) /gene="aldA" /locus_tag="SF1797" /note="aldehyde dehydrogenase A; Provisional; Region: PRK10090" /db_xref="CDD:182233" misc_feature complement(order(1832693..1832695,1832705..1832707, 1832993..1832995,1833002..1833004,1833011..1833013, 1833020..1833022,1833059..1833064,1833074..1833076, 1833164..1833166,1833173..1833175,1833245..1833256)) /gene="aldA" /locus_tag="SF1797" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143407" misc_feature complement(order(1832846..1832848,1832855..1832857, 1832948..1832950,1833242..1833244)) /gene="aldA" /locus_tag="SF1797" /note="catalytic residues [active]" /db_xref="CDD:143407" misc_feature complement(order(1832354..1832356,1832372..1832374, 1832843..1832848,1832948..1832950,1833218..1833220, 1833239..1833241)) /gene="aldA" /locus_tag="SF1797" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143407" gene complement(1833897..1834426) /gene="ydcF" /locus_tag="SF1798" /pseudo /db_xref="GeneID:1024991" misc_feature complement(1833897..1834426) /gene="ydcF" /locus_tag="SF1798" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787683 (267 aa). BLAST with identity of 98% in 176 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element 1834428..1834902 /note="partial" /mobile_element_type="insertion sequence:IS600" mobile_element 1834903..1836151 /mobile_element_type="insertion sequence:IS911" gene 1834975..1835277 /locus_tag="SF1799" /db_xref="GeneID:1026474" CDS 1834975..1835277 /locus_tag="SF1799" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_707660.1" /db_xref="GeneID:1026474" /translation="MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVK QLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR" misc_feature 1834978..1835247 /locus_tag="SF1799" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1835304..1836143 /locus_tag="SF1800" /db_xref="GeneID:1024984" CDS 1835304..1836143 /locus_tag="SF1800" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_707661.1" /db_xref="GeneID:1024984" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature 1835325..1836134 /locus_tag="SF1800" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" mobile_element 1836153..1836944 /note="partial" /mobile_element_type="insertion sequence:IS600" gene 1836188..1836901 /locus_tag="SF1801" /db_xref="GeneID:1025002" CDS 1836188..1836901 /locus_tag="SF1801" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 integrase core domain-containing protein" /protein_id="NP_707662.1" /db_xref="GeneID:1025002" /translation="MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQ KRKFRATTNPNHNLPVAPNLLNQTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYT CEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGL KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHS RLGNISPAAFREKYHQMTA" misc_feature <1836188..1836874 /locus_tag="SF1801" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1837102..1840947) /gene="hrpA" /locus_tag="SF1802" /db_xref="GeneID:1024989" CDS complement(1837102..1840947) /gene="hrpA" /locus_tag="SF1802" /note="Code: L; COG: COG1643" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase HrpA" /protein_id="NP_707663.2" /db_xref="GeneID:1024989" /translation="MLRDRLRFSRRLHCVKKVKNPDAQQAIFQEMAKEIDQAAGKVLL REAARPEITYPDNLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICMELGRGI KGLIGHTQPRRLAARTVANRIAEELKTEPGGCIGYKVRFSDHVSDNTMVKLMTDGILL AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERF SRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELSQESPGDILI FMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSHSGRRIVLATNVAET SLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRL YSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLL EELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSI QDPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWNYLGEQQKALSSNAFRRLCRTDY LNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHIALLTGLLSHIGMKDADKQE YTGARNARFSIFPGSGLFKKPPKWVMVAELVETSRLWGRIAARIDPEWVEPVAQHLIK RTYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQIDSALCRELFIRHALVEGDW QTRHAFFRENLKLRAEVEELEHKSRRRDILVDDETLFEFYDQRISHDVISARHFDSWW KKVSRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGNLKLRLSYQFEPGADADGVT VHIPLPLLNQVEESGFEWQIPGLRRELVIALIKSLPKPVRRNFVPAPNYAEAFLGRVT PLELPLLDSLERELRRMTGVTVDREDWHWDQVPDHLKITFRVVDDKNKKLKEGRSLQD LKDALKGKVQETLSAVADDGIEQSGLHIWSFGQLPESYEQKRGNYKVKAWPALVDERD SVTIKLFDNPLEQKQAMWNGLRRLLLLNISSPIKYLHEKLPNKAKLGLYFNPYGKVLE LIDDCISCGVDQLIDANGGPVWTEEGFAALHEKVRAELNDTVVDIAKQVEQILTAVFN INKRLKGRVDMTMALGLSDIKAQMGGLVYRGFVTGNGFKRLGDTLRYLQAIEKRLEKL AVDPHRDRAQMLKVENVQQAWQQWINKLPPARREDEDVKEIRWMIEELRVSYFAQQLG TPYPISDKRILQAMEQISG" misc_feature complement(1837111..1840947) /gene="hrpA" /locus_tag="SF1802" /note="ATP-dependent RNA helicase HrpA; Provisional; Region: PRK11131" /db_xref="CDD:182986" gene 1841205..1841810 /gene="acpD" /locus_tag="SF1803" /db_xref="GeneID:1027790" CDS 1841205..1841810 /gene="acpD" /locus_tag="SF1803" /note="Code: I; COG: COG1182" /codon_start=1 /transl_table=11 /product="azoreductase" /protein_id="NP_707664.1" /db_xref="GeneID:1027790" /translation="MSKVLVLKSSILAGYSQSNQLSDYFVEQWSEKHSADEITVRDLA ANPIPVLDGELVGALRPSDAPLTPRQQEALALSDELIAELKAHDVIVIAAPMYNFNIS TQLKNYFDLVARAGVTFRYTENGPEGLVTGKKAIVITSRGGIHKDGPTDLVTPYLSTF LGFIGITDVKFVFAEGIAYGPEMAAKAQSDAKAAIDSIVAA" misc_feature 1841205..1841807 /gene="acpD" /locus_tag="SF1803" /note="azoreductase; Reviewed; Region: PRK00170" /db_xref="CDD:234675" misc_feature complement(1841864..1844417) /note="Similar to Escherichia coli K12 enzymes gi: 1787679 (431 aa). BLAST with identity of 98% in 850 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." gene complement(1841864..1842472) /locus_tag="SF1803a" /db_xref="GeneID:16608332" CDS complement(1841864..1842472) /locus_tag="SF1803a" /codon_start=1 /transl_table=11 /product="phosphatase" /protein_id="YP_008439255.1" /db_xref="GeneID:16608332" /translation="MMMVQLWWSVWLCWPVLSLLIIGRGCGGLGAITTGKDSQGKLPP AVYWLTLPWRIGMWLSMRWFCRRLEPVSKMTAGVYLRAFPRHIPAQNAVLDVTFEFPR GRATKDRLYFCVPMLDLVVPEEGELRQAVAMLETLREEQGSVLVHCALGLSRSALVVA AWLLCYGHCKTVDEAIIFIRARRSHIVLKEEHKAMLKLWENR" misc_feature complement(1841870..1842274) /locus_tag="SF1803a" /note="unknown subfamily of bacterial and plant dual specificity protein phosphatases; Region: DSP_bac; cd14527" /db_xref="CDD:350376" mobile_element 1842509..1843772 /mobile_element_type="insertion sequence:IS600" gene 1842573..1842875 /locus_tag="SF1804" /db_xref="GeneID:1024978" CDS 1842573..1842875 /locus_tag="SF1804" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707665.1" /db_xref="GeneID:1024978" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 1842573..1842845 /locus_tag="SF1804" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1842911..1843729 /locus_tag="SF1805" /db_xref="GeneID:1024990" CDS 1842911..1843729 /locus_tag="SF1805" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707666.1" /db_xref="GeneID:1024990" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVVPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <1842911..1843702 /locus_tag="SF1805" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1843770..1844480) /locus_tag="SF1807" /db_xref="GeneID:1024988" CDS complement(1843770..1844480) /locus_tag="SF1807" /note="Code: I; COG: COG0671" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707667.1" /db_xref="GeneID:1024988" /translation="MCGAFLRFRWRCVVITERRNVLLQGAGWLLLLAPFFFFTYGSLN QFTAVQDLNSHDIPSQVFGWETAIPFLPWTIVPYWSLDLLYGFSLFVCSSTFEQRRLV HRLILATVMACCGFFLYPLKFSFIRPEVSGVTGWLFSQLELFDLPYNQSPSLHIILCW LLWRHFRQHLAVRWRKVCGGWFLLIAISTLTTWQHHFIDVITGLAVGMLIDWMVPVDR RWNYQKLDQRRIKIALPY" misc_feature complement(1843827..1844279) /locus_tag="SF1807" /note="PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin; Region: PAP2_Aur1_like; cd03386" /db_xref="CDD:239481" misc_feature complement(order(1843884..1843886,1843896..1843898, 1843914..1843916,1844016..1844024,1844100..1844102, 1844124..1844126)) /locus_tag="SF1807" /note="active site" /db_xref="CDD:239481" gene complement(1844431..1846188) /locus_tag="SF1808" /db_xref="GeneID:1024983" CDS complement(1844431..1846188) /locus_tag="SF1808" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707668.1" /db_xref="GeneID:1024983" /translation="MENSRIPGEHFFTTSDNTALYYRHWPTLQPGAKKVIVLFHRGHE HSGRLQHLVDELAMPDTAFYAWDARGHGKNSGPRGYSPSLMRSVQDVDEFVRFAASDS QVGLEEVVVIAQSVGAVLVATWVHDYAPAIRGLVLASPAFKVKLYVPLARPALALWHR LRGLFFINSYVKGRYLTHDRQRVASFNNDPLITRAIAVNILLDLYKTSERIVSDAAAI TLPTQLLISGDDYVVHRQPQIDFYQRLRSPLKELHLLPGFYHDTLGEENRAQAFEKMQ SFICRLYANKSQKFDYQHEDRTGPSADRWRLLSGGPVPLSPVDLAYRFMRKAMKLFGA HSAGLHLGMSTGFDSGSSLDYVYQNQPQGSNAFGRLIDKIYLNSVGWRGIRQRKTHLQ ILIKQAVADLHAKGLAVRVVDIAAGHGRYVLDALANEPAVSDILLRDYSELNVAQGQE MIAQRGMSGRVRFEQGDAFNPEELSALTPRPTLAIVSGLYELFPENEQVKNSLAGLAN AIEPGGILIYTGQPWHPQLELIAGVLTSHKDGKPWVMRVRSQGEMDSLVRNAGFDKCT QRIDVWGIFTVSMAVRRDN" misc_feature complement(1845394..1846095) /locus_tag="SF1808" /note="Serine aminopeptidase, S33; Region: Hydrolase_4; pfam12146" /db_xref="CDD:463473" misc_feature complement(1844443..1845366) /locus_tag="SF1808" /note="Putative methyltransferase; Region: Methyltransf_20; pfam12147" /db_xref="CDD:432362" misc_feature complement(order(1844728..1844730,1844785..1844793, 1844869..1844874,1844929..1844949)) /locus_tag="SF1808" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1846204..1847099) /locus_tag="SF1809" /pseudo /db_xref="GeneID:1024994" gene complement(1847099..1847704) /locus_tag="SF1810" /db_xref="GeneID:1024985" CDS complement(1847099..1847704) /locus_tag="SF1810" /note="Code: I; COG: COG0558" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707670.2" /db_xref="GeneID:1024985" /translation="MTLYQIKPLFQSLLRPTMFWLYKHHVTANHITLTALALSLFTGL LLVLVAQPILFLLLPIVLFIRMALNALDGMLARECNQQTRLGAILNETGDVISDIALY LPFLFLPESNASLVILMLFCTILTEFCGLLAQTINGVRSYAGPFGKSDRALIFGLWGL AVAIYPQWMQWNNLLWSIASILLICTAINRCRSVLLMSAER" misc_feature complement(1847120..1847623) /locus_tag="SF1810" /note="Phosphatidylglycerophosphate synthase [Lipid transport and metabolism]; Region: PgsA; COG0558" /db_xref="CDD:440324" gene complement(1847875..1850184) /gene="ydbD" /locus_tag="SF1811" /db_xref="GeneID:1024973" CDS complement(1847875..1850184) /gene="ydbD" /locus_tag="SF1811" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707671.3" /db_xref="GeneID:1024973" /translation="MSGSAFAVTHHAFSSGAGRTSDGNGSHASTLKSPSYTKSVSWQH YQDKQQVEQAINSSVNLVPFGLSASDWKVHRGDLVVEGNIESNQKLIVLGNLTVKGNI STFSLSNPWVILGNVTATNIVTDSPLLITGSINASGLVFIDSYYDNPSTIKGSINARG VFINDIIAPVVASSTNSEFMVRASDKNDTENVKKALMIINPDAYYWGLINDEDALKEI FKRSNIRMAGNVCNQMKKEALFRPKPSPELVQELQMLDEGNVAAFEGRDIATFDLAIM RTLPRLKGISANLRKQLINSNDEQTIESMARYMPDNEILELTDQQLGYQPVVLGLLDR EPLSVEIMTRMSRLPDGVGPLNLALRENLPLDIVMTLAKRDWDMIIQELYKDAWLLPE SIIDGYIRSDDSSIRQVGAGGQLTYNQAMQLANDSSNNVVTSLAFKLAEMKHHGQLLR MTPQESDKVAAYLYQKFENDDDLIRVLFLALPDNLQFNFVKRMEKKSPAYFCCRDMQV IHSDAALQRLLTRFNDPEGWSNLAKNQYLSTSMKQKIWQRALSHRKNNPKADSDAYET SADMILSELISHGEVDDQMLLNAAALIRLEDWDFLESALVSWDNLPAVVLKELQQNTP RNDIWAKFFLRQENSSRAQVDEALRVYYALDPDALAQLDVLAKQPDRIWWSTLAKSNL TFFKFGALSNRHTPSAALAAEIDPEWWIVAMNNPRFPVDVLKARLKRDPLLALELVNP ELDLVRQLALNGKTRAIREQAMRKLDELY" misc_feature complement(1849690..1849959) /gene="ydbD" /locus_tag="SF1811" /note="Polymer-forming cytoskeletal; Region: Bactofilin; pfam04519" /db_xref="CDD:461340" misc_feature complement(1847878..1848120) /gene="ydbD" /locus_tag="SF1811" /note="Protein of unknown function (DUF2773); Region: DUF2773; pfam10971" /db_xref="CDD:287885" mobile_element 1850049..1850816 /mobile_element_type="insertion sequence:IS1" gene 1850298..1850801 /gene="insB" /locus_tag="SF1812" /db_xref="GeneID:1024998" CDS 1850298..1850801 /gene="insB" /locus_tag="SF1812" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707672.1" /db_xref="GeneID:1024998" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 1850406..1850798 /gene="insB" /locus_tag="SF1812" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1850795..1851139) /gene="hslJ" /locus_tag="SF1813" /pseudo /db_xref="GeneID:1025016" misc_feature complement(1850795..1851139) /gene="hslJ" /locus_tag="SF1813" /note="Similar to Escherichia coli K12 heat shock protein hslJ ref: NP_415897.1 (140 aa). BLAST with identity of 99% in 114 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(1851238..1852227) /gene="ldhA" /locus_tag="SF1814" /db_xref="GeneID:1024976" CDS complement(1851238..1852227) /gene="ldhA" /locus_tag="SF1814" /note="Code: CHR; COG: COG1052" /codon_start=1 /transl_table=11 /product="fermentative D-lactate dehydrogenase" /protein_id="NP_707673.1" /db_xref="GeneID:1024976" /translation="MKLAVYSTKQYDKKYLQQVNESFGFELEFFDFLLTEKTAKTANG CEAVCIFVNDDGSHPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLKVVRVPAYDP EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMYGKTAGVIGTGKIGVAML RILKGFGMRLLAFDPYPSAAALELGVEYVDLPTLFSESDVISLHCPLTPENYHLLNEA AFDQMKNGVMIVNTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI QDDVFRRLSACHNVLFTGHQAFLTAEALTSISQTTLQNLSNLEKGETCPNELV" misc_feature complement(1851244..1852227) /gene="ldhA" /locus_tag="SF1814" /note="D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; Region: LDH_like_2; cd12183" /db_xref="CDD:240659" misc_feature complement(order(1851334..1851336,1851343..1851345, 1851526..1851528,1851928..1851930,1851994..1852002)) /gene="ldhA" /locus_tag="SF1814" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:240659" misc_feature complement(order(1851334..1851339,1851343..1851345, 1851451..1851456,1851526..1851534,1851586..1851588, 1851595..1851597,1851607..1851618,1851703..1851711, 1851760..1851771,1851775..1851777,1851913..1851915, 1851928..1851930)) /gene="ldhA" /locus_tag="SF1814" /note="putative NAD binding site [chemical binding]; other site" /db_xref="CDD:240659" gene 1852435..1855074 /gene="ydbH" /locus_tag="SF1815" /db_xref="GeneID:1024979" CDS 1852435..1855074 /gene="ydbH" /locus_tag="SF1815" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707674.1" /db_xref="GeneID:1024979" /translation="MLGKYKAVLALLLLIILVPLTLLMTLGLWVPTLADIWLPLGTRI ALDESPRITRKGLIIPDLRYLVGDCQLAHITNASLSHPSRWLLNVGTVELDSACLAKL PQTEQSPAAPKTLAQWQSMLPNTWINIDKLIFSPWQEWQGKLSLALTSDIQQLRYQGE KVKFQGQLKGQQLTVSELDVVAFENQPPVKLVGEFTMPLVPDGLPVSGHATATLNLPQ EPSLVDAELDWQENSGQLIVLARDNGDPLLDLPWQITRQQLTVSDGRWSWLYAGFPLS GRLGVKVDNWQAGLENALVSGRLNVLTQGQAGKGNAVLNFGPGKLSMDNSQLPLQLTG EAKQADLILYARLPAQLSGSLSDPTLTFEPGALLRSKGRVIDSLDIDEIRWPLAGVKV TQRGVDGRLQAILQAHENELGDFVLHMDGLANDFLPDAGRWQWRYWGKGSFTPMNATW DVAGKGEWHDSTITLTDLSTGFDQLQYGTMTVEKPRLILDKPVVWVRDAQHPSFSGAL SLDAGQTLFTGGSVLPPSTLKFSVDGRNPTYFLFKGDLHAGEIGPVRVNGRWDGIRLR GNAWWPKQSLTVFQPLVPPDWKMNLRDGELYAQVAFSAAPEQGFRAGGHGVLKGGSAW MPDNQVNGVDFVLPFRFADGAWHLGTRGPVTLRIAEVINLVTAKNITADLQGRYPWTE EEPLLLTDVSVDVLGGNVLMKQLRMPQHDPALLRLNNLSSSELVSAVNPKQFAMSGAF SGALPLWLNNEKWIVKDGWLANSGLMTLRLDKDTADAVVKDNMTAGSAINWLRYMEIS RSSTKINLDNLGLLTMQANITGTSRVDGKSGTVNLNYHHEENIFTLWRSLRFGDNLQA WLEQNARLPGNDCPQGKECEEKQ" misc_feature 1852504..1855020 /gene="ydbH" /locus_tag="SF1815" /note="YdbH family protein; Region: PRK10695" /db_xref="CDD:182654" gene 1855071..1855256 /gene="ynbE" /locus_tag="SF1816" /db_xref="GeneID:1024972" CDS 1855071..1855256 /gene="ynbE" /locus_tag="SF1816" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707675.1" /db_xref="GeneID:1024972" /translation="MKILLAALTSSFMLVGCTPRIEVAAPKEPITINMNVKIEHEIII KADKDVEELLETRSDLF" misc_feature 1855146..1855247 /gene="ynbE" /locus_tag="SF1816" /note="YnbE-like lipoprotein; Region: Lipoprotein_19; pfam13617" /db_xref="CDD:463935" gene 1855261..1855590 /gene="ydbL" /locus_tag="SF1817" /db_xref="GeneID:1024970" CDS 1855261..1855590 /gene="ydbL" /locus_tag="SF1817" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707676.2" /db_xref="GeneID:1024970" /translation="MMKKTLLLCAFLVGLVSSNVMALTLDEARTQGRVGETFYGYLVA LKTDAETEKLVTEINAERKASYQQRAKQNNVSVDDIAKLAGQKLVARAKPGEYVQGIN GKWVRKF" misc_feature 1855264..1855584 /gene="ydbL" /locus_tag="SF1817" /note="Uncharacterized conserved protein YdbL, DUF1318 family [Function unknown]; Region: YdbL; COG3784" /db_xref="CDD:442998" mobile_element 1855987..1856754 /mobile_element_type="insertion sequence:IS1" gene 1856042..1856317 /gene="insA" /locus_tag="SF1818" /db_xref="GeneID:1024975" CDS 1856042..1856317 /gene="insA" /locus_tag="SF1818" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707677.1" /db_xref="GeneID:1024975" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 1856063..>1856314 /gene="insA" /locus_tag="SF1818" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1856344..1856739 /gene="insB" /locus_tag="SF1819" /db_xref="GeneID:1024982" CDS 1856344..1856739 /gene="insB" /locus_tag="SF1819" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707678.1" /db_xref="GeneID:1024982" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 1856347..1856736 /gene="insB" /locus_tag="SF1819" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 1856755..1856875 /gene="hslJ" /locus_tag="SF1820" /pseudo /db_xref="GeneID:1025618" misc_feature 1856755..1856875 /gene="hslJ" /locus_tag="SF1820" /note="Similar to Escherichia coli K12 heat shock protein hslJ gi: 1787644 (141 aa). BLAST with identity of 99% in 40 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(1856872..1857234) /locus_tag="SF1821" /db_xref="GeneID:1024997" CDS complement(1856872..1857234) /locus_tag="SF1821" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707679.1" /db_xref="GeneID:1024997" /translation="MRGNAQDSSRRRPLCCLLFMAVSFGLKIRGRRDASSVLGRCAAL LLSACSSEPVQQATAAHVAPSLKASMSSSGEANCAMIGGSLSVARQLDGTAIGMCALP NGKRCSEQSLAAGSCGSY" misc_feature complement(1856881..1857135) /locus_tag="SF1821" /note="Putative hemolysin [General function prediction only]; Region: Hlx; COG3042" /db_xref="CDD:442276" gene 1857411..1860935 /gene="ydbK" /locus_tag="SF1822" /db_xref="GeneID:1025019" CDS 1857411..1860935 /gene="ydbK" /locus_tag="SF1822" /codon_start=1 /transl_table=11 /product="oxidoreductase, Fe-S subunit" /protein_id="NP_707680.1" /db_xref="GeneID:1025019" /translation="MITIDGNGAVASVTFRISEVIAIYPITPSSTMAEQADAWAGNGL KNVWGDTPRVVEMQSEAGAIATVHGALQTGALSTSFTSSQGLLLMIPTLYKLAGELTP FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAANVQEAQDFALISHIATLKSR VPFIHFFDGFRTSHEINKIVPLADDTILDLMPQAEIDAHRARALNPEHPVIRGTSANP DTYFQSREATNPWYNAVYDHVEQAMNDFAAATGRQYQPFEYYGHPQAERVIILMGSAI GTCEEVVDELLTRGEKVGVLKVRLYRPFSAKHLLQALPGSVRSVAVLDRTKEPGAQAE PLYLDVMTALAEAFNNGERETLPRVIGGRYGLSSKEFGPDCVLAVFAELNAAKPKARF TVGIYDDVTNLSLPLPENTLPNSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQ GYFVYDSKKAGGLTVSHLRVSEQPIRSAYLISQADFVGCHQLQFIDKYQMAERLKPSG IFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVINAAKIARECGLAARINTVMQMAF FHLTQILPGDSALAELQGAIAKSYSSKGQDLVERNWQALALARESVEEVPLQPVNPHS ANRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIP IWKEELCTQCNHCVAACPHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQV APEDCTGCNLCVEVCPAKDRQNPEIKAINMMSRQEHVEEEKINYDFFLNLPEIDRSKL ERIDIRTSQLITPLFEYSGACPGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLP STPYTTDANGRGPAWANSLFEDNAEFGLGFRLTVDQHRVRVLRLLDQFADKIPAELLT ALKSDATPEVRREQVAALRQQLNDVAEAHELLRDADALVEKSIWLIGGDGWAYDIGFG GLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMM MYGHVYVAQISLGAQLNQTVKAIQEAEAYPGPSLIIAYSPCEEHGYDLALSHDQMRQL TATGFWPLYRFDPRRADEGKLPLALDSRPPSEALEETLLHEQRFRRLNSQQPEVAEQL WKDAAANLQKRYDFLAQMAGKAEKSNTD" misc_feature 1857411..1860908 /gene="ydbK" /locus_tag="SF1822" /note="pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; Region: pyruv_ox_red; TIGR02176" /db_xref="CDD:131231" gene 1861302..1862411 /locus_tag="SF1823" /pseudogene="unknown" /db_xref="GeneID:1025028" gene 1862500..1863006 /gene="ynaF" /locus_tag="SF1824" /db_xref="GeneID:1026482" CDS 1862500..1863006 /gene="ynaF" /locus_tag="SF1824" /note="Code: T; COG: COG0589" /codon_start=1 /transl_table=11 /product="universal stress protein F" /protein_id="NP_707682.2" /db_xref="GeneID:1026482" /translation="MNSVITQKVSSGVTLYADTKTGGFMNRTILVPIDISDSELTQRV ISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKK FKLPTDRVHVHVEEGSPKDRILELAKKIPAHMIIIASHRPDITTYLLGSNAAAVVRHA ECSVLVVR" misc_feature 1862572..1863003 /gene="ynaF" /locus_tag="SF1824" /note="universal stress protein UspF; Region: PRK15005" /db_xref="CDD:184967" gene 1863182..1864117 /gene="ydaO" /locus_tag="SF1825" /db_xref="GeneID:1025014" CDS 1863182..1864117 /gene="ydaO" /locus_tag="SF1825" /note="Code: D; COG: COG0037" /codon_start=1 /transl_table=11 /product="tRNA 2-thiocytidine biosynthesis protein TtcA" /protein_id="NP_707683.1" /db_xref="GeneID:1025014" /translation="MSQNQEISKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMV CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHVLPEYLEKLGVEYKI VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGTTKIALGHHRDDILQTLFL NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIQRFADAKAFPIIPCNLCGSQPN LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVNGGD LAFDREEIPLQPAGWQPEEDENQLDELRLNVVEVK" misc_feature 1863212..1863985 /gene="ydaO" /locus_tag="SF1825" /note="tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional; Region: PRK10696" /db_xref="CDD:236737" gene complement(1864246..1865613) /gene="dbpA" /locus_tag="SF1826" /db_xref="GeneID:1024971" CDS complement(1864246..1865613) /gene="dbpA" /locus_tag="SF1826" /note="Code: LKJ; COG: COG0513" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase DbpA" /protein_id="NP_707684.2" /db_xref="GeneID:1024971" /translation="MTAFSTLNVLPPAQLTNLNELGYLTMTPVQAAALPAILAGKDVR VQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLARFLPNTK ILTLCGGQPFGMQRDSLQHAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDEADRMLD MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDALPPIEQ QFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVEQSALSLHGDLE QRDQTLVRFANGSARVLVATDVAARGLDIKSLELVVNFELAWDPEVHVHRIGRTARAG NSGLAISFCAPEEAQRANIISDMLQIKLNWQTPPANSSIVTLEAEMATLCIDGGKKAK MRPGDVLGALTGDIGLDGADIGKIAVHPAHVYVAVRQAVAHKAWKQLQGGKIKGKTCR VRLLK" misc_feature complement(1864249..1865613) /gene="dbpA" /locus_tag="SF1826" /note="ATP-dependent RNA helicase DbpA; Provisional; Region: PRK11776" /db_xref="CDD:236977" gene complement(1866091..1867074) /gene="zntB" /locus_tag="SF1827" /db_xref="GeneID:1024977" CDS complement(1866091..1867074) /gene="zntB" /locus_tag="SF1827" /note="Code: P; COG: COG0598" /codon_start=1 /transl_table=11 /product="zinc transporter" /protein_id="NP_707685.1" /db_xref="GeneID:1024977" /translation="MEAIKGSDVNVPDAVFAWMLDGRGGVKPLENTDVIDEAHPCWLH LNYVHHDSAQWLATTPLLPNNVRDALAGESTRPRVSRFGEGTLITLRCINGSTDERPD QLVAMRVYMDGRLIVSTRQRKVLALDDVVSDLEEGTGPTDCGGWLVDVCDALTDHSSE FIEQLHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW MSDDQRRRMQDIADRLGRGLDEIDACIARTGVMADEIAQVMQENLARRTYTMSLMAMV FLPSTFLTGLFGVNLGGIPGGGWQFGFSIFCILLVVLIGGVALWLHRSKWL" misc_feature complement(1866094..1867065) /gene="zntB" /locus_tag="SF1827" /note="zinc transporter ZntB; Region: zntB; PRK09546" /db_xref="CDD:181941" misc_feature complement(order(1866382..1866384,1866448..1866450, 1866457..1866462,1866604..1866606,1866613..1866615, 1866697..1866702,1866706..1866717,1866757..1866762, 1866802..1866804,1866808..1866810,1866844..1866852, 1866934..1866936,1866943..1866945)) /gene="zntB" /locus_tag="SF1827" /note="Cl binding site [ion binding]; other site" /db_xref="CDD:213367" misc_feature complement(order(1866106..1866108,1866115..1866117, 1866151..1866156,1866163..1866168,1866202..1866225, 1866229..1866246,1866250..1866258,1866262..1866300, 1866304..1866327,1866334..1866342,1866346..1866351, 1866355..1866360,1866367..1866372,1866376..1866381, 1866388..1866393,1866397..1866402,1866433..1866438, 1866445..1866450,1866457..1866462,1866466..1866468, 1866478..1866483,1866487..1866492,1866499..1866504, 1866511..1866516,1866520..1866525,1866556..1866558, 1866565..1866570,1866574..1866579,1866586..1866588, 1866595..1866600,1866607..1866609,1866619..1866621, 1866631..1866633,1866640..1866642,1866676..1866678, 1866688..1866690,1866835..1866837,1866841..1866843, 1866871..1866876,1866883..1866885)) /gene="zntB" /locus_tag="SF1827" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:213367" gene 1867269..1868561 /locus_tag="SF1828" /pseudo /db_xref="GeneID:1025018" misc_feature 1867269..1868561 /locus_tag="SF1828" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787603 (431 aa). BLAST with identity of 98% in 431 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(1868582..1869145) /gene="ydaL" /locus_tag="SF1829" /pseudo /db_xref="GeneID:1024999" misc_feature complement(1868582..1869145) /gene="ydaL" /locus_tag="SF1829" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1787602 (188 aa). BLAST with identity of 98% in 187 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(1869399..1870853) /locus_tag="SF1830" /db_xref="GeneID:1025012" CDS complement(1869399..1870853) /locus_tag="SF1830" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="multidrug resistant protein-like protein" /protein_id="NP_707686.1" /db_xref="GeneID:1025012" /translation="MMSMRKHIAFASMCMGLFIAQLDIQIVSSSLNEIGGGLSAGKDE MAWLQTSYLIAEIIVIPLSGWLSRVFSTRWLFTLSAGIFTLMSIACGLAWNIQIMILF RALQGAAGASMIPLVFTMAFIYYQGKELGLAAAVVSALASLSPTLGPTLGGWLTDNLD WRWLFYINILPGIYLVLSIPFLVNFDKPDLSLLKVADYPSIILLAMTLGCLEYTLEEG ARWGWLDDNTILLTSVLALVSFILFAARTLTISNPIMDLHAFKDKNFTLGCFFSFSGG VGIFSTVYLIPVFLGQIRGLNAEEIGFAVCTTGIFQLFSVPFYFWLSKKINLRWLLMA GLGGFVFSMYLFTPITHEWGWQELLFPQAIRGISQQFAMAPIVTLTLGGIPKERLKLA SGVFNLTRNLGGAIGIALCGSILNNRTNFHFSRMGEKMVSVPHTVNDFISRSALFFNR SRSDQTSEILASTKLLSQLMLREAQTMAFSVPFC" misc_feature complement(1869405..1870832) /locus_tag="SF1830" /note="drug resistance transporter, EmrB/QacA subfamily; Region: efflux_EmrB; TIGR00711" /db_xref="CDD:129794" misc_feature complement(1870850..1873569) /note="Similar to Mesorhizobium loti probable secretion protein ref: NP_103897.1 (367 aa). BLAST with identity of 46% in 906 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." gene 1871358..1871546 /locus_tag="SF1831" /db_xref="GeneID:1025011" CDS 1871358..1871546 /locus_tag="SF1831" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707687.1" /db_xref="GeneID:1025011" /translation="MLTRKSIDTVLLSVGAEKLSQREWDWMKMLKPMDPPPAMVAASI LERRGDTAALTRLQDTGG" gene 1871556..1872755 /locus_tag="SF1832" /db_xref="GeneID:1025020" CDS 1871556..1872755 /locus_tag="SF1832" /codon_start=1 /transl_table=11 /product="IS1294 transposase" /protein_id="NP_707688.1" /db_xref="GeneID:1025020" /translation="MLSAFTPRPLKRLFTANQCWTSFLDAGGLRDIEVEAVTKMLACG TRILGVKEYICDKPECPHVRYVTNSCGSRACPSCGKKATDLWIATQLNRLPDCDWVHL VFTLPDTQWPVFESNRWLLNDVCRLAVENLLYAARKRGQEPGIFCAIHTYGRRLNWHP HVHVSVTCGGLNKHGQWKKLSFLKDAMRSRWMWNMRQRLLKAWSEGLAMPESLSHITT ESQRRSLVLKAGGKYWHVYMSKKTAGGRNTARYLGRYLKKPPIAASRLAHYNGGASLS FRYLDHKTGETATETLTQRELVARLKQHIPEKFFKMVRYFGFLANRVCGEKLPQVYRA LGMDKPEPVAKVCYAQMVKQFLSRDPFECVLCGGRMVYRRAIAGLNVEGLKKNARDIS LLRYMPA" misc_feature 1871583..1872692 /locus_tag="SF1832" /note="IS91 family transposase; Region: transpos_IS91; NF033538" /db_xref="CDD:468069" mobile_element 1871574..1872926 /note="partial" /mobile_element_type="insertion sequence:IS1294" gene 1873663..1874478 /locus_tag="SF1834" /db_xref="GeneID:1025001" CDS 1873663..1874478 /locus_tag="SF1834" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707689.3" /db_xref="GeneID:1025001" /translation="MTITLQPKASPGHHIIGLDSEHLNGGTVPWHKHLYAQLLYPAEG VVRVWAGESVWLVHASSALWLPPQMPHKFVATGNVLLKTVLVSEAESETLGTVCFMTG ISPLLRELLIAINQLPPSQSTTDKQQLRFSALETLILQEIKMGVKMSLELPWPNDERL QQLCENLLNNQGYLPTLDNLADKINVSSRTLMRLFVKETGLTFRHWVQQMHVISAVTL LDDGYSLTKIAHRLGYASAESFGNMFKRRTGYSPGKFTRRLTMHNYAITRQMI" misc_feature 1873693..1874439 /locus_tag="SF1834" /note="AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:441809" misc_feature 1874200..1874436 /locus_tag="SF1834" /note="Helix-turn-helix domain; Region: HTH_18; pfam12833" /db_xref="CDD:432818" gene 1874808..1875011 /locus_tag="SF1834a" /db_xref="GeneID:16608333" CDS 1874808..1875011 /locus_tag="SF1834a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439256.1" /db_xref="GeneID:16608333" /translation="MPSFLQAEKLKNRFMLSDCDKPDAKLGTYYSLVLPYPLIFLVVW LLMLLAWYLVGLPIGQGIYPRLS" misc_feature <1874868..1875008 /locus_tag="SF1834a" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl21473" /db_xref="CDD:473875" gene 1875022..1875537 /gene="ogt" /locus_tag="SF1835" /db_xref="GeneID:1025017" CDS 1875022..1875537 /gene="ogt" /locus_tag="SF1835" /note="Code: L; COG: COG0350" /codon_start=1 /transl_table=11 /product="O-6-alkylguanine-DNA:cysteine-protein methyltransferase" /protein_id="NP_707690.1" /db_xref="GeneID:1025017" /translation="MLRLLEEKIATPLGPLWVICDEQFRLRAVEWEEYSERMVQLLDI HYRKEGYERISATNPGGLSDKLREYFAGNLSIIDTLPTATGGTPFQREVWKTLRTIPC GQVMHYGQLAEQLGRPGAARAVGAANGSNPISIVVPCHRVIGRNGTMTGYAGGVQRKE WLLRHEGYLLL" misc_feature 1875022..1875534 /gene="ogt" /locus_tag="SF1835" /note="methylated-DNA--[protein]-cysteine S-methyltransferase; Region: PRK10286" /db_xref="CDD:182355" gene 1875732..1876484 /gene="fnr" /locus_tag="SF1836" /db_xref="GeneID:1025042" CDS 1875732..1876484 /gene="fnr" /locus_tag="SF1836" /note="Code: T; COG: COG0664" /codon_start=1 /transl_table=11 /product="fumarate/nitrate reduction transcriptional regulator" /protein_id="NP_707691.2" /db_xref="GeneID:1025042" /translation="MIPEKRIIRRIQSGGCAIHCQDCSISQLCIPFTLNEHELDQLDN IIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFD AIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRLMSGEIKGDQDMILL LSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYLGLTVETISRLLGRF QKSGMLAVKGKYITIENNDALAQLAGHTRNVA" misc_feature 1875762..1876466 /gene="fnr" /locus_tag="SF1836" /note="fumarate/nitrate reduction transcriptional regulator Fnr; Region: PRK11161" /db_xref="CDD:183004" gene 1876636..1877586 /gene="ydaA" /locus_tag="SF1837" /db_xref="GeneID:1025007" CDS 1876636..1877586 /gene="ydaA" /locus_tag="SF1837" /note="Code: T; COG: COG0589" /codon_start=1 /transl_table=11 /product="universal stress protein UspE" /protein_id="NP_707692.2" /db_xref="GeneID:1025007" /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF SYEMTTLLSPDERTAMRQGVISQRTAWIHEQAKYYLNAGVPIEIKVVWHNRPFEAIIQ EVISGGHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV NLASEEPYHNALNEKLVKETIELAEQVNHTEVHLVGAYPVTPINIAIELPEFDPSVYN DAIRGQHLLAMKALRQKFGINENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGI SAAFLGNTAEQVIDHLRCDLLVIKPDQYQTPVELDDEEDD" misc_feature 1876639..1877553 /gene="ydaA" /locus_tag="SF1837" /note="universal stress protein UspE; Provisional; Region: PRK11175" /db_xref="CDD:236871" mobile_element complement(1878085..1879333) /mobile_element_type="insertion sequence:IS911" gene complement(1878093..1878932) /locus_tag="SF1838" /db_xref="GeneID:1025008" CDS complement(1878093..1878932) /locus_tag="SF1838" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_707693.1" /db_xref="GeneID:1025008" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature complement(1878102..1878911) /locus_tag="SF1838" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(1878959..1879261) /locus_tag="SF1839" /db_xref="GeneID:1026489" CDS complement(1878959..1879261) /locus_tag="SF1839" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_707694.1" /db_xref="GeneID:1026489" /translation="MKKRNFSAEFKRESAQLVVDQKYTVADAAKAMDVGLSTMTRWVK QLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATALLMSDSLNSSR" misc_feature complement(1878989..1879258) /locus_tag="SF1839" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1879389..1880420 /locus_tag="SF1840" /db_xref="GeneID:1024992" CDS 1879389..1880420 /locus_tag="SF1840" /note="Code: M; COG: COG0668" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707695.1" /db_xref="GeneID:1024992" /translation="MIAELFTNNALNLVIIFGSCAALILMSFWFRRGNRKRKGFLFHA VQFLIYTIIISAVGSISNYVIENYKLKFITPGVIDFICTSLIAVILTIKLFLLINQFE KQQIKKGRDITSARIMSRIIKITIIVVLVLLYGEHFGMSLSGLLTFGGIGGLAVGMAG KDILSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITKITTFDNRPLYVPN SLFSSISVENPGRMTNRRITTTIGLRYEDAAKVGVIVEAVREMLKNHPAIDQRQTLLV YFNQFADSSLNIMVYCFTKTTVWAEWLAAQQDVYLKIIDIVQSHGADFAFPSQTLYMD NITPPEQGR" misc_feature 1879617..1880393 /locus_tag="SF1840" /note="Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]; Region: MscS; COG0668" /db_xref="CDD:440432" gene complement(1880471..1882105) /locus_tag="SF1841" /db_xref="GeneID:1025009" CDS complement(1880471..1882105) /locus_tag="SF1841" /note="Code: EP; COG: COG0747" /codon_start=1 /transl_table=11 /product="transport protein" /protein_id="NP_707696.1" /db_xref="GeneID:1025009" /translation="MSVRGKLMKHSVSVTCCALLVSSISLSYAAEVPSGTVLAEKQEL VRHIKDEPASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIVPGVATQWKSNDNRIWT FTLRDNAKWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGINNAQAIIDGKATP DQLGVTAVDAHTLKIQLDKPLPWFVNLTANFAFFPVQKANVESGKEWTKPGNLIGNGA YVLKERVVNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFP KNMYQKLLKDIPGQVYTPPQLGTYYYAFNTQKGPTADQRVRLALSMTIDRRLMTEKVL GTGEKPAWHFIPDVTAGFTPEPSPFEQMSQEELNAQAKTLLSAAGYGPQKPLKLTLLY NTSENHQKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEP STFLTLLTSMHSGNISRFNNPAYDKVLAQASTENTVKARNADYNAAEKILMEQAPIAP IYQYTNGRLIKPWLKGYPINNPEDVAYSRTMYIVKH" misc_feature complement(1880477..1882084) /locus_tag="SF1841" /note="ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166" /db_xref="CDD:443327" gene complement(1882421..1882887) /gene="ycjZ" /locus_tag="SF1842" /pseudo /db_xref="GeneID:1025013" misc_feature complement(1882421..1882887) /gene="ycjZ" /locus_tag="SF1842" /note="Similar to Escherichia coli K12 transcriptional regulator LYSR-type gi: 1787589 (300 aa). BLAST with identity of 99% in 155 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element 1882888..1883264 /note="partial" /mobile_element_type="insertion sequence:IS600" gene 1882952..1883254 /locus_tag="SF1843" /db_xref="GeneID:1024995" CDS 1882952..1883254 /locus_tag="SF1843" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707697.1" /db_xref="GeneID:1024995" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 1882952..1883224 /locus_tag="SF1843" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element complement(1883263..1883693) /note="partial" /mobile_element_type="insertion sequence:IS629" gene complement(1883305..1884174) /locus_tag="SF1844" /pseudogene="unknown" /db_xref="GeneID:1025000" mobile_element complement(1883694..1884554) /note="partial" /mobile_element_type="insertion sequence:IS629" gene complement(1884174..1884500) /locus_tag="SF1846" /db_xref="GeneID:1025047" CDS complement(1884174..1884500) /locus_tag="SF1846" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_707700.1" /db_xref="GeneID:1025047" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEF DRLWKK" misc_feature complement(1884210..1884497) /locus_tag="SF1846" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element 1884554..1885446 /note="partial" /mobile_element_type="insertion sequence:IS600" gene 1884585..1885403 /locus_tag="SF1847" /db_xref="GeneID:1024996" CDS 1884585..1885403 /locus_tag="SF1847" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707701.1" /db_xref="GeneID:1024996" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKHKFRATTNSNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA" misc_feature <1884585..1885376 /locus_tag="SF1847" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 1885767..1886687 /locus_tag="SF1849" /pseudo /db_xref="GeneID:1025015" misc_feature 1885767..1886687 /locus_tag="SF1849" /note="Similar to Salmonella enterica subsp. enterica serovar Typhi integrase ref: NP_456439.1 (358 aa). BLAST with identity of 96% in 307 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1887237..1887578) /locus_tag="SF1850" /db_xref="GeneID:1025037" CDS complement(1887237..1887578) /locus_tag="SF1850" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707703.1" /db_xref="GeneID:1025037" /translation="MMKKSILAFLLLTSSAAALAAPQVITVSRFEVGKDKWAFNREEV MLTCRPGNALYVINPSTLVQYPLNDIAQKEVASGKTNAQPISVIQIDDPNNPGEKMSL APFIERAEKLC" misc_feature complement(1887240..1887503) /locus_tag="SF1850" /note="Protein of unknown function (DUF2511); Region: DUF2511; pfam10709" /db_xref="CDD:431451" gene complement(1887591..1888463) /locus_tag="SF1851" /pseudo /db_xref="GeneID:1025043" misc_feature complement(1887591..1888463) /locus_tag="SF1851" /note="Similar to Escherichia coli K12 resistance protein gi: 1788145 (291 aa). BLAST with identity of 98% in 290 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1888467..1888841) /locus_tag="SF1852" /db_xref="GeneID:1025006" CDS complement(1888467..1888841) /locus_tag="SF1852" /note="Code: R; COG: COG2372" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707704.1" /db_xref="GeneID:1025006" /translation="MASTARSLRYALAILTTSLVTPSVWAHAHLTHQYPAANAQVTAA PQAITLNFSEGVETGFSGAKITGPKNENIKTLPAKRNEQDQKQLIVPLADSLKPGTYT VDWHVVSVDGHKTKGHYTFSVK" misc_feature complement(1888470..1888841) /locus_tag="SF1852" /note="CopC domain-containing protein YobA; Region: PRK10301" /db_xref="CDD:182365" gene 1888980..1889210 /gene="holE" /locus_tag="SF1853" /db_xref="GeneID:1023376" CDS 1888980..1889210 /gene="holE" /locus_tag="SF1853" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit theta" /protein_id="NP_707705.2" /db_xref="GeneID:1023376" /translation="MLKNLAKLDQTEMDKVNVDLAAAGVAFKERYNMPVIAEAVEREQ PEHLRSWFRERLIAHRLASVNLSRLPYEPKLK" misc_feature 1888980..1889201 /gene="holE" /locus_tag="SF1853" /note="DNA polymerase III subunit theta; Reviewed; Region: PRK10969" /db_xref="CDD:182872" gene 1889312..1889968 /locus_tag="SF1854" /pseudo /db_xref="GeneID:1025034" misc_feature 1889312..1889968 /locus_tag="SF1854" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788148 (219 aa). BLAST with identity of 99% in 219 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene 1889992..1890654 /locus_tag="SF1855" /db_xref="GeneID:1025005" CDS 1889992..1890654 /locus_tag="SF1855" /note="Code: L; COG: COG0847" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease X" /protein_id="NP_707706.2" /db_xref="GeneID:1025005" /translation="MLRIIDTETCGLQGGIVEIASVDVIDGKIVNPMSLLVRPDRPIS PQAMAIHRITEAMVADKPWIEDVIPHYYGSEWYVAHNASFDRRVLPEMPGEWICTMKL ARRLWPGLKYSNMALYKTRKLNVQTPLGLHHHRALYDCYITAALLIDIMNTSGWTAEQ MADITGRPSLMTTFTFGKYRGKAVSDVAERYPGYLRWLFNNLDSMSPELRLTLKHYLE NT" misc_feature 1889992..1890648 /locus_tag="SF1855" /note="exodeoxyribonuclease X; Provisional; Region: PRK07983" /db_xref="CDD:181186" gene complement(1890651..1892711) /gene="ptrB" /locus_tag="SF1856" /db_xref="GeneID:1025040" CDS complement(1890651..1892711) /gene="ptrB" /locus_tag="SF1856" /note="Code: E; COG: COG1770" /codon_start=1 /transl_table=11 /product="protease 2" /protein_id="NP_707707.1" /db_xref="GeneID:1025040" /translation="MLPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPKVLDYLQQEN SYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKNGYRYRHIYEPGCEYAIYQRQS AFSEEWDEWETLLDANKRAAHSEFYSMGGMAITPDNTIMALAEDFLSRRQYGIRFRNL ETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHAIGTPASQDTLIYE EKDDTYYVSLHKTTSKHYVVIHLASATTSEVRLLDAEMADAEPFVFLPRRKDHEYSLD HYQHRFYLRSNRHGKNFGLYRTRMRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQ RGLTSLRQINRKTREVIGIAFDDPAYVTWIAYNPEPETARLRYGYSSMTTPDTLFELD MDTGERRVLKQTEVPGFDAANYRSEHLWIVARDGVEVPVSLVYHRKHFRKGHNPLLVY GYGSYGASIDADFSFSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDY LDACDALLKLGYGSPSLCYAMGGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTML DESIPLTTGEFEEWGNPQDPQYYEYMKSYSPYDNVTAQAYPHLLVTTGLHDSQVQYWE PAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLVALAQGTLPA TPAD" misc_feature complement(1890654..1892711) /gene="ptrB" /locus_tag="SF1856" /note="protease 2; Provisional; Region: PRK10115" /db_xref="CDD:182247" gene complement(1892921..1893580) /gene="yebE" /locus_tag="SF1857" /db_xref="GeneID:1025044" CDS complement(1892921..1893580) /gene="yebE" /locus_tag="SF1857" /note="Code: S; COG: COG2979" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707708.1" /db_xref="GeneID:1025044" /translation="MANWLNQLQSLLGQSSSSTSSSADQGLGKLLVSGALGGLAGLLV ANKSARKLLTKYGTNALLVGGGAVAGTVLWNKYKDKIRAAHQDEPQFGAQSTPLDERT ERLILALVFAAKSDGHIDANERAAIDQQLREAGVEEQGRVLIEQAIEQPLDPQRLATG VRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQDVREGIERDLEQQKRTLA E" misc_feature complement(1892951..>1893436) /gene="yebE" /locus_tag="SF1857" /note="Uncharacterized membrane protein YebE, DUF533 family [Function unknown]; Region: YebE; COG2979" /db_xref="CDD:442218" gene complement(1893907..1894263) /gene="yebF" /locus_tag="SF1858" /db_xref="GeneID:1025024" CDS complement(1893907..1894263) /gene="yebF" /locus_tag="SF1858" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707709.2" /db_xref="GeneID:1025024" /translation="MKKRGAFLGRLLVSACASVFAANNETSKSVTFPKCEGLDAAGIA ASVKRDYQQNRVARWADDQKIVGQADPVAWVSLQDIQGKDDKWSVPLTVRGKSADIHY QVCVDCKAGMAEYQRR" misc_feature complement(1893910..1894260) /gene="yebF" /locus_tag="SF1858" /note="hypothetical protein; Provisional; Region: PRK13680" /db_xref="CDD:184237" gene 1894754..1895932 /gene="purT" /locus_tag="SF1859" /db_xref="GeneID:1025071" CDS 1894754..1895932 /gene="purT" /locus_tag="SF1859" /note="Code: F; COG: COG0027" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase 2" /protein_id="NP_707710.1" /db_xref="GeneID:1025071" /translation="MTLLGTALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRY ADAPAMHVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIATDMLIQLEEEGLNVV PCARATKLTMNREGIRRLAAEELQLPTSTYRFADSKSLFREAVAAIGYPCIVKPVMSS SGKGQTFIRSAEQLAQAWEYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC APVGHRQEDGDYRESWQPQQMSPLALERAQEIARKVVLALGGYGLFGVELFVCGDEVI FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPVGGIRQYGPAASAVILPQLTSQN VTFDNVQNAVGADLQIRLFGKPEIDGSRRLGVVLATSESVVDAIERAKHAAGQVKVQG " misc_feature 1894754..1895926 /gene="purT" /locus_tag="SF1859" /note="Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]; Region: PurT; COG0027" /db_xref="CDD:439798" gene complement(1895988..1896629) /gene="eda" /locus_tag="SF1860" /db_xref="GeneID:1025033" CDS complement(1895988..1896629) /gene="eda" /locus_tag="SF1860" /note="Code: G; COG: COG0800" /codon_start=1 /transl_table=11 /product="keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase" /protein_id="NP_707711.1" /db_xref="GeneID:1025033" /translation="MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVL EVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK AATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCP TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL" misc_feature complement(1895994..1896629) /gene="eda" /locus_tag="SF1860" /note="keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; Provisional; Region: PRK05718" /db_xref="CDD:235577" misc_feature complement(order(1896147..1896149,1896225..1896227, 1896231..1896233,1896411..1896413,1896483..1896485, 1896495..1896497)) /gene="eda" /locus_tag="SF1860" /note="active site" /db_xref="CDD:188632" misc_feature complement(order(1896171..1896176,1896186..1896188, 1896222..1896227,1896252..1896254,1896264..1896266, 1896270..1896281,1896339..1896350,1896405..1896407, 1896411..1896413,1896483..1896485)) /gene="eda" /locus_tag="SF1860" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:188632" misc_feature complement(1896231..1896233) /gene="eda" /locus_tag="SF1860" /note="catalytic residue [active]" /db_xref="CDD:188632" gene complement(1896666..1898477) /gene="edd" /locus_tag="SF1861" /db_xref="GeneID:1025041" CDS complement(1896666..1898477) /gene="edd" /locus_tag="SF1861" /note="Code: EG; COG: COG0129" /codon_start=1 /transl_table=11 /product="phosphogluconate dehydratase" /protein_id="NP_707712.1" /db_xref="GeneID:1025041" /translation="MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGN LAHGFAACQPENKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVG QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG LTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP GTCTFYGTANTNQMVVEFMGMQLPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWM PIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMA RLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGEL DWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVV FESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVT DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARE PHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF" misc_feature complement(1896672..1898474) /gene="edd" /locus_tag="SF1861" /note="6-phosphogluconate dehydratase; Region: edd; TIGR01196" /db_xref="CDD:130264" gene complement(1898712..1900187) /gene="zwf" /locus_tag="SF1862" /db_xref="GeneID:1025029" CDS complement(1898712..1900187) /gene="zwf" /locus_tag="SF1862" /experiment="mass spectrum study" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate dehydrogenase" /protein_id="YP_004797676.1" /db_xref="GeneID:1025029" /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKVGQLNPDTR IIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFNRL GAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEIN DQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG IEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR SNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPG LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE" misc_feature complement(1898721..1900187) /gene="zwf" /locus_tag="SF1862" /note="Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]; Region: Zwf; COG0364" /db_xref="CDD:440133" gene complement(1900353..1900502) /locus_tag="SF1862a" /db_xref="GeneID:16608334" CDS complement(1900353..1900502) /locus_tag="SF1862a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439257.1" /db_xref="GeneID:16608334" /translation="MTISALKEIEMQFCQILRLCAVLMTKADKKVVIFFHNMISVRFL PNGKR" gene 1900525..1901394 /gene="yebK" /locus_tag="SF1863" /db_xref="GeneID:1025068" CDS 1900525..1901394 /gene="yebK" /locus_tag="SF1863" /note="Code: K; COG: COG1737" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator HexR" /protein_id="NP_707713.1" /db_xref="GeneID:1025068" /translation="MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAALALEA NVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESA MATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYS DDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLARE ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES RFDKQLLNLSDDR" misc_feature 1900525..1901364 /gene="yebK" /locus_tag="SF1863" /note="DNA-binding transcriptional regulator HexR; Provisional; Region: PRK11302" /db_xref="CDD:183082" gene 1901522..1902964 /gene="pykA" /locus_tag="SF1864" /db_xref="GeneID:1025032" CDS 1901522..1902964 /gene="pykA" /locus_tag="SF1864" /note="Code: G; COG: COG0469" /codon_start=1 /transl_table=11 /product="pyruvate kinase" /protein_id="NP_707714.2" /db_xref="GeneID:1025032" /translation="MSKRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK GEGDKEKVGIDYKGLPTDVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK GINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA KIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQL NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVPFDSANDGVAAASEAVNLLRDKGY LMSGDLVIVTQGDVMSTVGSTNTTRILTVE" misc_feature 1901528..1902928 /gene="pykA" /locus_tag="SF1864" /note="pyruvate kinase; Provisional; Region: PRK05826" /db_xref="CDD:235619" gene complement(1903095..1904066) /gene="msbB" /locus_tag="SF1865" /db_xref="GeneID:1027792" CDS complement(1903095..1904066) /gene="msbB" /locus_tag="SF1865" /note="Code: N; COG: COG1560" /codon_start=1 /transl_table=11 /product="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase" /protein_id="NP_707715.1" /db_xref="GeneID:1027792" /translation="METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMAGIALTPPKFR DPILARLGRFAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAE LAIRGPEKIQPRVGWQGLEIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAM FHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSE FVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHT IERRMNEEVEIFVGPRPEQYTWILKLLKTRKPGEIQPYKRKDLYPIK" misc_feature complement(1903104..1904066) /gene="msbB" /locus_tag="SF1865" /note="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated; Region: PRK08943" /db_xref="CDD:236355" misc_feature complement(order(1903431..1903439,1903575..1903586, 1903635..1903637,1903641..1903643,1903650..1903652)) /gene="msbB" /locus_tag="SF1865" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153246" gene complement(1904186..1905508) /gene="yebA" /locus_tag="SF1866" /db_xref="GeneID:1025021" CDS complement(1904186..1905508) /gene="yebA" /locus_tag="SF1866" /note="Code: M; COG: COG0739" /codon_start=1 /transl_table=11 /product="peptidase" /protein_id="NP_707716.1" /db_xref="GeneID:1025021" /translation="MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRD ATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVST GDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRE TRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQ WQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRN GTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGE VVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGP HLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD" misc_feature complement(1904189..1905508) /gene="yebA" /locus_tag="SF1866" /note="putative peptidase; Provisional; Region: PRK11649" /db_xref="CDD:236946" gene complement(1905524..1906582) /gene="yebL" /locus_tag="SF1868" /db_xref="GeneID:1025045" CDS complement(1905524..1906582) /gene="yebL" /locus_tag="SF1868" /note="Code: P; COG: COG0803" /codon_start=1 /transl_table=11 /product="adhesin" /protein_id="NP_707717.3" /db_xref="GeneID:1025045" /translation="MAKRNRDIFQGNQTCHVNFSLAVVMKCYNITLLIFITMIGRIML HKKTLLFAALSTALWGGATQAADAAVVASLKPVGFIASAIADGVTETEVLLPDGASEH DYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLPEAKQVTIAQLEDVKPLLMKSI HGDDDDHDHAEKSDEDHHHGDFNMHLWLSPEIARATAVAIHGKLVELMPQSRAKLDAN LKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPG AQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTLDPLGTNIKLGKTSY SEFLSQLANQYASCLKGD" misc_feature complement(1905533..1906453) /gene="yebL" /locus_tag="SF1868" /note="zinc ABC transporter substrate-binding protein ZnuA; Region: znuA; PRK09545" /db_xref="CDD:236558" misc_feature complement(order(1905620..1905622,1905836..1905838, 1906028..1906030,1906277..1906279)) /gene="yebL" /locus_tag="SF1868" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238501" gene 1906535..1907290 /gene="znuC" /locus_tag="SF1867" /db_xref="GeneID:1025031" CDS 1906535..1907290 /gene="znuC" /locus_tag="SF1867" /note="Code: P; COG: COG1121" /codon_start=1 /transl_table=11 /product="high-affinity zinc ABC transporter ATPase" /protein_id="NP_707718.1" /db_xref="GeneID:1025031" /translation="MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKS TLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDIL PALKRVQAGHLINAPMQKLSGGETQRVLLARALLNCPQLLVLDEPTQGVDVNGQVALY DLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFG PRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS" misc_feature 1906535..1907287 /gene="znuC" /locus_tag="SF1867" /note="high-affinity zinc transporter ATPase; Reviewed; Region: znuC; PRK09544" /db_xref="CDD:181939" gene 1907287..1908071 /locus_tag="SF1869" /db_xref="GeneID:1025026" gene complement(1908218..1909228) /gene="ruvB" /locus_tag="SF1870" /db_xref="GeneID:1025087" CDS complement(1908218..1909228) /gene="ruvB" /locus_tag="SF1870" /note="Code: L; COG: COG2255" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase RuvB" /protein_id="NP_707720.1" /db_xref="GeneID:1025087" /translation="MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIF IKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGAQEVARRARG TPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPE MP" misc_feature complement(1908227..1909228) /gene="ruvB" /locus_tag="SF1870" /note="Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair]; Region: RuvB; COG2255" /db_xref="CDD:441856" gene complement(1909237..1909848) /gene="ruvA" /locus_tag="SF1871" /db_xref="GeneID:1025030" CDS complement(1909237..1909848) /gene="ruvA" /locus_tag="SF1871" /note="Code: L; COG: COG0632" /codon_start=1 /transl_table=11 /product="Holliday junction DNA helicase RuvA" /protein_id="NP_707721.1" /db_xref="GeneID:1025030" /translation="MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQE AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV EREEVGPLVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAE QEAVAALVALGYKPQEASRMVSKIARPDTSSETLIREALRAAL" misc_feature complement(1909240..1909848) /gene="ruvA" /locus_tag="SF1871" /note="Holliday junction branch migration protein RuvA; Region: ruvA; PRK00116" /db_xref="CDD:234645" gene 1910052..1910723 /locus_tag="SF1872" /db_xref="GeneID:1025027" CDS 1910052..1910723 /locus_tag="SF1872" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707722.3" /db_xref="GeneID:1025027" /translation="MRLLKNNFLCYYVYLYLFQWNDNVNINYPAEYEIGDIVFTCIGA ALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRVPLSTITTLSRFIKRSSNQRYAIK RLDAGLTEQQKQRIVEQVPSRLRKLYHTGFKYESSRQFCSKFVFDIYKEALCIPVGEI ETFGQLLNSNPNAKLTFWKFWFLGSIPWERKTVTPASLWHHPGLVLIHAEGVETPQPE LTEAV" misc_feature 1910124..1910720 /locus_tag="SF1872" /note="YebB family permuted papain-like enzyme; Region: PRK11470" /db_xref="CDD:183152" gene complement(1910725..1911246) /gene="ruvC" /locus_tag="SF1873" /db_xref="GeneID:1025092" CDS complement(1910725..1911246) /gene="ruvC" /locus_tag="SF1873" /note="Code: L; COG: COG0817" /codon_start=1 /transl_table=11 /product="Holliday junction resolvase" /protein_id="NP_707723.2" /db_xref="GeneID:1025092" /translation="MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSR LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY AARQVKQTVVGMGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM SESRLNLTRGRLR" misc_feature complement(1910770..1911237) /gene="ruvC" /locus_tag="SF1873" /note="crossover junction endodeoxyribonuclease RuvC; Region: ruvC; TIGR00228" /db_xref="CDD:129331" misc_feature complement(order(1910932..1910934,1911004..1911009, 1911016..1911018,1911022..1911024,1911028..1911030, 1911034..1911042,1911115..1911117,1911133..1911135, 1911142..1911144,1911211..1911219)) /gene="ruvC" /locus_tag="SF1873" /note="nucleic acid substrate binding site [nucleotide binding]; other site" /db_xref="CDD:438562" misc_feature complement(order(1910950..1910952,1910956..1910958, 1910965..1910970,1910977..1910982,1910986..1910991, 1910998..1911003,1911010..1911015,1911022..1911024, 1911031..1911033,1911100..1911102,1911109..1911114, 1911118..1911126)) /gene="ruvC" /locus_tag="SF1873" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:438562" gene complement(1911281..1912022) /gene="yebC" /locus_tag="SF1874" /pseudo /db_xref="GeneID:1026542" misc_feature complement(1911281..1912022) /gene="yebC" /locus_tag="SF1874" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788171 (247 aa). BLAST with identity of 97% in 247 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(1912051..1912533) /gene="ntpA" /locus_tag="SF1875" /db_xref="GeneID:1025022" CDS complement(1912051..1912533) /gene="ntpA" /locus_tag="SF1875" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="dihydroneopterin triphosphate pyrophosphatase" /protein_id="NP_707724.2" /db_xref="GeneID:1025022" /translation="MSEGSQRRGSVKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPD FWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYA PGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA " misc_feature complement(1912054..1912494) /gene="ntpA" /locus_tag="SF1875" /note="dihydroneopterin triphosphate pyrophosphatase; Provisional; Region: nudB; PRK09438" /db_xref="CDD:236516" gene complement(1912621..1914393) /gene="aspS" /locus_tag="SF1876" /db_xref="GeneID:1025025" CDS complement(1912621..1914393) /gene="aspS" /locus_tag="SF1876" /note="Code: J; COG: COG0173" /codon_start=1 /transl_table=11 /product="aspartyl-tRNA synthetase" /protein_id="NP_707725.1" /db_xref="GeneID:1025025" /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTII NRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE RRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQI DEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEAILDRTAAQDGDMI FFGADNKKIVADGMGALLLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHP FTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEE EQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE APSFANPTALAELSIQVVKKAENN" misc_feature complement(1912630..1914393) /gene="aspS" /locus_tag="SF1876" /note="Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: AspS; COG0173" /db_xref="CDD:439943" gene 1914670..1916719 /gene="yecD" /locus_tag="SF1877" /pseudo /db_xref="GeneID:1025035" misc_feature 1914670..1916719 /gene="yecD" /locus_tag="SF1877" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788174 (200 aa). BLAST with identity of 96% in 719 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo misc_feature 1914921..1921791 /note="ipaH island III" mobile_element complement(1915003..1916376) /mobile_element_type="insertion sequence:ISSfl2" gene 1915149..1916345 /locus_tag="SF1878" /db_xref="GeneID:1025089" CDS 1915149..1916345 /locus_tag="SF1878" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl2 transposase" /protein_id="NP_707726.1" /db_xref="GeneID:1025089" /translation="MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDE NKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAG EAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIR GLLTQIHPALERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKR LAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYP VLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGN KALKRALFLSAFTALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTF YTPQGS" misc_feature 1915185..1916321 /locus_tag="SF1878" /note="IS110 family transposase; Region: transpos_IS110; NF033542" /db_xref="CDD:468073" gene 1917074..1917322 /locus_tag="SF1879" /db_xref="GeneID:1026504" CDS 1917074..1917322 /locus_tag="SF1879" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707727.1" /db_xref="GeneID:1026504" /translation="MRFEICIAKEKMTKMPTGAVDALKEELTRRISKRYDDVEVIVKA TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH" misc_feature 1917119..1917313 /locus_tag="SF1879" /note="DinI-like family; Region: DinI; cl11630" /db_xref="CDD:448327" gene 1917922..1919673 /gene="ipaH_4" /locus_tag="SF1880" /db_xref="GeneID:1025069" CDS 1917922..1919673 /gene="ipaH_4" /locus_tag="SF1880" /codon_start=1 /transl_table=11 /product="invasion plasmid antigen" /protein_id="NP_707728.1" /db_xref="GeneID:1025069" /translation="MLPTNNNHRLISNSFSTYSIDTSRAYENYLTHWTEWKNNRIQEE QRDIAFQRLVSCLQNQETNLDLSELGLTTLPEIPPGIKSINISKNNLSLISPLPASLT QLNVSYNRLIELPALPQGLKLLNASHNQLITLPTLPISLKELHVSNNQLCSLPVLPEL LETLDVSCNGLAVLPPLPFSLQEISAIGNLLSELPPLPHNIHSIWAIDNMLTDIPYLP ENLRNGYFDINQISHIPESILNLRNECSIDISDNPLSSHALQSLQRLTSSPDYHGPQI YFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDT VSARNTSGFREQVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLV HQASEGLFDNDTGALLSLGREMFRLEILEDIARDKVRTLHFVDEIEVYLAFQTMLAEK LQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSREENEFTDWFSLWGPWHAVLKRTEAD RWALAEEQKYEMLENEYPQRVADRLKASGLSGDADAEREAGAQVMRETEQQIYRQLTD EVLALRLPENGSQLHHS" misc_feature 1917976..1919628 /gene="ipaH_4" /locus_tag="SF1880" /note="type III secretion system effector E3 ubiquitin transferase SlrP; Region: PRK15370" /db_xref="CDD:185268" misc_feature 1918342..1918389 /gene="ipaH_4" /locus_tag="SF1880" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 1918402..1918461 /gene="ipaH_4" /locus_tag="SF1880" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 1918582..1918650 /gene="ipaH_4" /locus_tag="SF1880" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" gene complement(1919853..1920476) /locus_tag="SF1881" /db_xref="GeneID:1025067" CDS complement(1919853..1920476) /locus_tag="SF1881" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_707729.1" /db_xref="GeneID:1025067" /translation="MHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFD DRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAW RTEQEAKPFTFEWNGRTWNADASSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSM PELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVK" misc_feature complement(1919868..1920191) /locus_tag="SF1881" /note="Domain of unknown function (DUF4376); Region: DUF4376; pfam14301" /db_xref="CDD:433852" gene complement(1920555..1921838) /locus_tag="SF1882" /pseudogene="unknown" /db_xref="GeneID:1025079" gene complement(1921902..1922501) /locus_tag="SF1883" /db_xref="GeneID:1025095" CDS complement(1921902..1922501) /locus_tag="SF1883" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="NP_707731.1" /db_xref="GeneID:1025095" /translation="MRKLYAAILSAAICLAVSGAPAWASEHRSTLSAGYLHASTNAPG SDDLNGINVKYRYEFTDTLGLVTSFSYANAEDEQKTHYSDTRWHEDSVRNRWFSVMAG LSVRVNEWFSAYAMAGVAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDNRHSNTSLAW GAGVQFNPTESVAIDLAYEGSGSGDWRTDGFIVGVGYKF" misc_feature complement(1921905..1922501) /locus_tag="SF1883" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" gene complement(1922569..1926048) /locus_tag="SF1884" /db_xref="GeneID:1025077" CDS complement(1922569..1926048) /locus_tag="SF1884" /codon_start=1 /transl_table=11 /product="host specificity protein" /protein_id="NP_707732.1" /db_xref="GeneID:1025077" /translation="MGKGSSKGHTPREAKDNLKSTQLLSVIDAISEGPVDGPVDGLKS VLLNGTPVLDSEGKTNFSGVTVVFRAGEQEQTPPEGFESSGSETVLGTEVKYDTPITR TITSANIDRLRLTFGVQALVETTSKGDRNPSEVRLLVQIQRNGGWVTEKDITIKGKTT SQYLASVVVGNLPPRPFNIRMRRMTPDSTTDQLQNKTLWSSYTEIIDVKQCYPNTALV GVQVDSEQFGNQQVSRNYHLRGRILQVPSNYNPQTRQYSGIWDGTLKPAYSNNMAWCL WDMLTHPRYGMGKRLGAADVDKWALYVIGQYCDQSVPDGFGGTEPRITCNAYLTTQRK AWDVLSDFCSAMRCMPVWNGQTLTFVQDRPSDKVWTYNRSNVVMPDDGAPFRYSFSAL KDRHNVVEVNWIDPDNGHETATELVEDTQAIVRYGRNVTKMDAFGCTSRGQAHRAGLW LIKTELLETQTVDFSVGAEGLRHVPGDVIEICDDDYAGISTGGRVLAVNSQTRTLTLD REITLPSSGTTLISLVDGNGNPVSVEVQSVTDGVKVKVSRVPDGVAEYSVWGLKLPTL RQRLFRCVSIRENDDGTYAITAVQHVPEKEAIVDNGAHFDGDRRGTVNGVTPPAVQHL TAEVTADSGEYQVLARWDTPKVVKGVSFLLRLTVAADDGSERLVSTARTTETTYRFRQ LALGNYSLTVRAVNARGQQGDPASVSFRIAAPAAPVTIELIPGYFQITVVPKLAVYDP TVQFEFWFSEKRIADIRQVETSARYLGTALYWIAASINIRPGHDYYFYVRSVNTVGKS AFVEAVGRASDDAEGYLSFYKGLINKTHLGKELWTQIDNGQLAPDLTEIRTSITNVSN EITQTVNKKLENQSAAIQQIQKVQVDTNNNLNSMWAVKLQQMKDGRLYIAGIGAGIEN TPAGMQSQVLLAADRIAMINPANGNTKPMFVGQGDQIFMNDVFLKRLTAPTITSGGNP PAFSLTPGGRLTAKNADISGNVNANSGTLNNVTINKNCRVLGKLSANQIEGDLVKTVG KPFPRDSRAPERWPSGTITVRVYDDQPFDRQIVIPAVAFRGAKHERKNNNIYSSCRLI VKKNGAEIYNRTTLDNTLIYTGVIDMPAGHGHMTLEFSVSAWLVNGWYPTASISDLLV VVMKKSTAGISIS" misc_feature complement(1923028..1925403) /locus_tag="SF1884" /note="Phage-related protein, tail protein J [Mobilome: prophages, transposons]; Region: COG4733" /db_xref="CDD:443767" misc_feature complement(1922698..1923120) /locus_tag="SF1884" /note="Fibronectin type III protein; Region: DUF3672; pfam12421" /db_xref="CDD:289206" gene complement(1926109..1926651) /locus_tag="SF1885" /db_xref="GeneID:1025105" CDS complement(1926109..1926651) /locus_tag="SF1885" /codon_start=1 /transl_table=11 /product="phage tail protein" /protein_id="NP_707733.2" /db_xref="GeneID:1025105" /translation="MKTGAEAIRALATQLPAFRQKLSDGWYQVRIAGRDAGETELSAR LNEPLANGAVIHIVPRLVGAKSGGVFQAVLGAAVMAVAIWMPGVGIMASNLLFSLGAS MTLGGVAQMLAPKARTPRTQTTDNGKQNTCFSSLDNMVAQGNVLPVLYGEMRVGSRVV SQEISTADEGDGGQVVVIGR" misc_feature complement(1926142..1926648) /locus_tag="SF1885" /note="Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons]; Region: COG4723" /db_xref="CDD:443758" gene complement(1926648..1927247) /locus_tag="SF1886" /db_xref="GeneID:1025023" CDS complement(1926648..1927247) /locus_tag="SF1886" /codon_start=1 /transl_table=11 /product="tail assembly protein" /protein_id="NP_707734.2" /db_xref="GeneID:1025023" /translation="MAPEDWLRAQMQGEIVALVHSHPGGLPWLSEADRRLQVQSDLPW WLVCRGTIHKFRCVPHLTGRRFEHGVTDCYTLFRDAYHLAGIEMPDFHRGDDWWRHGQ NLYLDNLEATGLYQVPLSSAQPGDVLLCCFGSSVPNHAAIYCGDGELLHHIPEQLSKR ERYTDKWQRRTHSLWRHREWHASAFTGICNDLAAASTFV" misc_feature complement(1927068..>1927247) /locus_tag="SF1886" /note="Mpr1p, Pad1p N-terminal (MPN) domains; Region: MPN; cl13996" /db_xref="CDD:472685" misc_feature complement(1926720..1927061) /locus_tag="SF1886" /note="NlpC/P60 family; Region: NLPC_P60; cl21534" /db_xref="CDD:473902" gene complement(1927396..1928094) /locus_tag="SF1887" /db_xref="GeneID:1026511" CDS complement(1927396..1928094) /locus_tag="SF1887" /codon_start=1 /transl_table=11 /product="minor tail protein" /protein_id="NP_707735.1" /db_xref="GeneID:1026511" /translation="MQDIRQETLNECTRAEQSARVELWEIDLTEVGGERYFFCNEQNE KGEPVTWQGRQYQAYPIQGSGFELNGRGCAARPTLTVSNLHGMVTGMAEDLQSLVGGT VVRRKVYARFLDAVNFVNGNSDADPEQEVISRWRIEQCSELSAVSASFVLATPTETDG AVFPGRIMLANTCMWTYRSDECGYTGRAVADEFDKPTTDIRKDKCSKCMRGCELRNNT GNFGGFLSINKLSQ" misc_feature complement(1927399..1928079) /locus_tag="SF1887" /note="Phage tail protein [Mobilome: prophages, transposons]; Region: gp18; COG4672" /db_xref="CDD:443709" gene complement(1928094..1928423) /locus_tag="SF1888" /db_xref="GeneID:1025086" CDS complement(1928094..1928423) /locus_tag="SF1888" /codon_start=1 /transl_table=11 /product="minor tail protein" /protein_id="NP_707736.1" /db_xref="GeneID:1025086" /translation="METFHWKVRPDMNVVSEPKVVTVKLGDGYEQRRAAGLNNQLSTY SVTIRVRKGEHPSLKAFLERHGGVRAFQWTPPYDWKLIRVVCRKWSASVGALWVTVTA DFEQVVN" misc_feature complement(1928100..1928417) /locus_tag="SF1888" /note="Phage minor tail protein; Region: Phage_min_tail; pfam05939" /db_xref="CDD:428681" gene complement(1928423..1931464) /locus_tag="SF1889" /db_xref="GeneID:1025072" CDS complement(1928423..1931464) /locus_tag="SF1889" /codon_start=1 /transl_table=11 /product="tail length tape measure protein" /protein_id="NP_707737.1" /db_xref="GeneID:1025072" /translation="MDQIANLVIDLGIDAAEFKNEIPRIKNLLNGAASDAERSSARMQ RFMERQTQAARQTMQAASSAATAASAHAQTVEKNARAHERMAREVEQTRLRVDALNQK MREEQAQARALAEAQDKAAAAFYRQIDSVKQAGAGLQELQRIQQQIRQARNSGGVGQQ DYLALISEITAKTRALTQAEEQATRQKAAFIRQLKEQATRQNLSSSELLRARAAQLGV SSAAEVYIRKMERAGKATHSLGLKSAAARRELGVLISQMARGNFGALRGSGITLANRA GWTGALMSPKGMMTGGVIGGLVAAVLGLGKAWHDGRKEGEKFNRQLALTGHYAGVTVG QLWKLSRAISGNGITQHAAAGALAQVVGSGAFHGNDIGMVAKAAAQMERSVGQSVSDT INQFKRLKDDPVNAAKALDNALHFLNATQLEQIRVLGEQGRSSDAARIAMSALAEETG KRTSDIDNNLNALGSTLQTLSDWWKQFWDAAMNIGREDSLDAQIDALQEKIQRAKKYP WTNASTQVEYDQQRLNDLQEKKRRKDLQDAKAQAERNYQEQQKRRNAENAALNRMNET EAARHQREIARINAMQYADQAVRDAAIQRENERYEKAIKKNTRATRNDEATRLLLQYS QQQAQVEGQIAAARQSAGIATERMTEAHKQLLALQQRISDLDGKKLTADEKSVLARKN ELIQALTLLDVKQQELQKQTALNDLRKKTVQLTSQLADKERALREQHNLDIATAGMGD KQRQRYQAQLRIRQEYRQQLQQLENDSRQKGTYGTEDYRRAEEVLKGSLKRQLNENKR YWQELEVAQGDWKNGAMRAFQNFTADADNAAGTAEQMFTVAFSSAGNALATFCTTGKL NFKSFTSSLLSDMARIMAQMAMMQAVKGVGSLFGFTTNADGGVYQSADLSRYSGTVVN RPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVADTGGSGMVMFAPQYNIEINND GTNGQIGPAALKVVYDLGKKAAADFMQQQARDGGRLSGAYR" misc_feature complement(<1930697..>1931371) /locus_tag="SF1889" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" misc_feature complement(1930187..1930780) /locus_tag="SF1889" /note="Prophage tail length tape measure protein; Region: TMP_2; pfam06791" /db_xref="CDD:429120" misc_feature complement(<1929182..>1930009) /locus_tag="SF1889" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" misc_feature complement(1928546..1929508) /locus_tag="SF1889" /note="phage tail tape measure protein, lambda family; Region: tape_meas_lam_C; TIGR01541" /db_xref="CDD:273681" gene complement(1931436..1931711) /locus_tag="SF1890" /db_xref="GeneID:1025073" CDS complement(1931436..1931711) /locus_tag="SF1890" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_707738.2" /db_xref="GeneID:1025073" /translation="MLSDMSATELGEWGDYFRMQSFSDVWMDAQFASLKALIVRMVSG SSDAAVADFSLLPEENGIPERTDEELMHLGEGISGGVRYGPDSQPGH" misc_feature complement(1931448..1931711) /locus_tag="SF1890" /note="Minor tail protein T; Region: Phage_tail_T; cl05636" /db_xref="CDD:297128" gene complement(1931774..1932160) /locus_tag="SF1891" /db_xref="GeneID:1025104" CDS complement(1931774..1932160) /locus_tag="SF1891" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_707739.2" /db_xref="GeneID:1025104" /translation="MFLKQDTFNYEKQSVVLSELSGLQRIEYLTFVQQRTAKFDAQEG ELPEAERQIAFLRMGMDINAWLVSRSLWNAEQSQDVETLCASIMTTWSYDALGAGAER VLSLSGMGTIENAGDDDHEALTPEKS" misc_feature complement(1931777..1932160) /locus_tag="SF1891" /note="Bacteriophage lambda tail assembly chaperone, TAC, protein G; Region: Phage_TAC_2; cl06106" /db_xref="CDD:297413" gene complement(1932219..1932959) /locus_tag="SF1892" /db_xref="GeneID:1025083" CDS complement(1932219..1932959) /locus_tag="SF1892" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_707740.2" /db_xref="GeneID:1025083" /translation="MTTPNPLAKTKGAGTTFWMYTGNGDAFANPLSDTDWLRLAMVKD LQPGEMTADAEDDTYLDDEDADWKTTTQGQKSVGDTSATLAWRPGDSGQKKLVQLFDS GEVCAFRIKYPNGTVDVFRGWLSSLGKTIASKDVMTRTVKISGVGRPYLAEEGTETVG VTGLTVAPASVSVKAGATTTLTFTVKPDGASDKAISVHSSDPQTASVTLSGLVATVKG VKQGSVSIVGMTSDGEFVAVAAVTVSAP" misc_feature complement(1932504..1932908) /locus_tag="SF1892" /note="Lambda phage tail tube protein, TTP; Region: Phage_TTP_12; pfam16461" /db_xref="CDD:406780" misc_feature complement(1932255..1932476) /locus_tag="SF1892" /note="Bacterial Ig-like domain (group 2); Region: Big_2; cl02708" /db_xref="CDD:445894" gene complement(1932970..1933371) /locus_tag="SF1893" /db_xref="GeneID:1025053" CDS complement(1932970..1933371) /locus_tag="SF1893" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_707741.1" /db_xref="GeneID:1025053" /translation="MNRHTQIRQSVLARLREQCGDSATFFDGLPAFIDAQELPAVAVW LSDAQYTGKMTDEDDWQAVLHIAVFIRAQAPDSELDMWMESTIFPALNDVPALSGLID TLNPLGFNYQRDNEMATWAMAEITYQITYTN" misc_feature complement(1932979..1933365) /locus_tag="SF1893" /note="Phage minor tail protein U; Region: Phage_tail_U; pfam06141" /db_xref="CDD:399267" gene complement(1933368..1933958) /locus_tag="SF1894" /db_xref="GeneID:1025119" CDS complement(1933368..1933958) /locus_tag="SF1894" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_707742.1" /db_xref="GeneID:1025119" /translation="MKGLENAIRNLNSLDTRMVPQASAWAINRVAQKAVSVATRQVAG NTVAGDNQVKGIPLKLVRQRVRVFKASPSGKMTARIRVNRGNLPAIKLNTTRRRAGEG LRVGKYFFRGAFVQQLANGRWHVLRCLPEARFATGHDHQGRLRKNRLPVEVVKIPLSG PLTQAFEDARDRIIAAEMPKQLGYALKQQLRLHLSK" misc_feature complement(1933371..1933958) /locus_tag="SF1894" /note="Prophage minor tail protein Z (GPZ); Region: Minor_tail_Z; pfam06763" /db_xref="CDD:284235" gene complement(1933945..1934316) /locus_tag="SF1895" /db_xref="GeneID:1025081" CDS complement(1933945..1934316) /locus_tag="SF1895" /codon_start=1 /transl_table=11 /product="tail attachment protein" /protein_id="NP_707743.1" /db_xref="GeneID:1025081" /translation="MADFDNLFDVALDLADKAIIRNMGIRAVITSGRLKGIMISGVFD DPENISLVAGGVRIEDSLPSLFVKTADILRLCRNDSLMIGRESFCVDRITPDDGGCSY IRLRREGLPGNVRAGRYYEGA" misc_feature complement(1933972..1934316) /locus_tag="SF1895" /note="Phage Head-Tail Attachment; Region: Phage_attach; cl05094" /db_xref="CDD:446606" gene complement(1934328..1934729) /locus_tag="SF1896" /db_xref="GeneID:1026787" CDS complement(1934328..1934729) /locus_tag="SF1896" /codon_start=1 /transl_table=11 /product="DNA-packaging protein" /protein_id="NP_707744.1" /db_xref="GeneID:1026787" /translation="MAKKDDNLKRLRELAASLGREPDISGSAADIAQRVAELEEELAN MDDTDIRDKSAHPENALTGHENEVISAQPETVIQNMDDLVTVVALVTLHTDALHATRD EPLAFVPPGMAFRVFAGVAAGMTERGLARMQ" misc_feature complement(1934340..1934720) /locus_tag="SF1896" /note="DNA packaging protein FI; Region: Packaging_FI; pfam14000" /db_xref="CDD:290707" mobile_element complement(1934847..1936220) /mobile_element_type="insertion sequence:ISSfl2" gene 1934993..1936189 /locus_tag="SF1897" /db_xref="GeneID:1025082" CDS 1934993..1936189 /locus_tag="SF1897" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl2 transposase" /protein_id="NP_707745.1" /db_xref="GeneID:1025082" /translation="MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDE NKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAG EAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIR GLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKR LAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYP VLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGN KALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTF YTPQGS" misc_feature 1935029..1936165 /locus_tag="SF1897" /note="IS110 family transposase; Region: transpos_IS110; NF033542" /db_xref="CDD:468073" gene complement(1936889..1936963) /locus_tag="SF4470" /db_xref="GeneID:3161842" tRNA complement(1936889..1936963) /locus_tag="SF4470" /product="tRNA-Gly" /codon_recognized="GGA" /db_xref="GeneID:3161842" gene complement(1936967..1937042) /locus_tag="SF4471" /db_xref="GeneID:3161840" tRNA complement(1936967..1937042) /locus_tag="SF4471" /product="tRNA-Thr" /codon_recognized="ACA" /db_xref="GeneID:3161840" gene complement(1937045..1937121) /locus_tag="SF4472" /db_xref="GeneID:3161839" tRNA complement(1937045..1937121) /locus_tag="SF4472" /product="tRNA-Arg" /codon_recognized="AGA" /db_xref="GeneID:3161839" gene complement(1937123..1937198) /locus_tag="SF4473" /db_xref="GeneID:3161837" tRNA complement(1937123..1937198) /locus_tag="SF4473" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161837" gene complement(1937375..1938064) /locus_tag="SF1898" /db_xref="GeneID:1025046" CDS complement(1937375..1938064) /locus_tag="SF1898" /codon_start=1 /transl_table=11 /product="Q antiterminator encoded by prophage CP-933P" /protein_id="NP_707746.2" /db_xref="GeneID:1025046" /translation="MNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRR KKIRYRDEVTGKMITRDNPPIPGKQSLAKGASIPLVSQVAFSTSSWRRAVLSLEEHYK AWLLWCYSGSICWEYQITITHWAWEEFKAHSGTRKIAEKTQERLKKLIWLAAQAVKAE LFGGEGYEYQELALLAGVTTKNWSKTFTGHWVVMKHIFHRLDSEALLFVMRTRSEQKA AFSKQSIAKVD" misc_feature complement(1937396..1938052) /locus_tag="SF1898" /note="Phage antitermination protein Q; Region: Phage_antiter_Q; pfam06323" /db_xref="CDD:428887" gene complement(1938061..1938420) /locus_tag="SF1899" /db_xref="GeneID:1025076" CDS complement(1938061..1938420) /locus_tag="SF1899" /codon_start=1 /transl_table=11 /product="crossover junction endodeoxyribonuclease" /protein_id="NP_707747.1" /db_xref="GeneID:1025076" /translation="MRHEFILPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVRQQ RLKLSLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDETNIVRGL PVPGGRLGIKITELECA" misc_feature complement(1938070..1938420) /locus_tag="SF1899" /note="Holliday junction resolvase RusA (prophage-encoded endonuclease) [Replication, recombination and repair]; Region: RusA; COG4570" /db_xref="CDD:443627" mobile_element 1938560..1939822 /mobile_element_type="insertion sequence:IS600" gene 1938624..1938926 /locus_tag="SF1900" /db_xref="GeneID:1025088" CDS 1938624..1938926 /locus_tag="SF1900" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707748.1" /db_xref="GeneID:1025088" /translation="MSRKTRRYSKEFKAEAVRTVLENQLSISEDASRLFLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 1938624..1938896 /locus_tag="SF1900" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1938962..1939780 /locus_tag="SF1901" /db_xref="GeneID:1026519" CDS 1938962..1939780 /locus_tag="SF1901" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707749.1" /db_xref="GeneID:1026519" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <1938962..1939753 /locus_tag="SF1901" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" mobile_element complement(1940278..1941041) /mobile_element_type="insertion sequence:IS1" gene complement(1940293..1940796) /gene="insB" /locus_tag="SF1902" /db_xref="GeneID:1025120" CDS complement(1940293..1940796) /gene="insB" /locus_tag="SF1902" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707750.2" /db_xref="GeneID:1025120" /translation="MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMD EQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature complement(1940296..1940688) /gene="insB" /locus_tag="SF1902" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 1941076..1941903 /locus_tag="SF1904" /db_xref="GeneID:1025059" CDS 1941076..1941903 /locus_tag="SF1904" /codon_start=1 /transl_table=11 /product="serine protease" /protein_id="NP_707752.1" /db_xref="GeneID:1025059" /translation="MKKVIPALALVLLTTGLVGCDRVEPGNVGIKVNKLGDDKGVGEV VGVGRYWTGWNTEVYIFPTFKQMKTYDEPFSFQMSDGTTIGYHIGVAYKVDPSKVTTV FQTYRKGVDDITDTDLRQKITDALNRLASKMTTDKFIDGGKSELLDAALKDIQEEMTP IGIQVMSLSYVGKPEYPPTVIDSINAKVTANQKTLQCEQEVKQREAEANMLRAEAAGQ ADAIRTKAQAEADAIRLRGEALRQNPNVMELEAINKWNGTLPQYMTSGANTPFIQVK" misc_feature 1941139..1941699 /locus_tag="SF1904" /note="SPFH domain / Band 7 family; Region: Band_7; pfam01145" /db_xref="CDD:426078" misc_feature <1941652..>1941792 /locus_tag="SF1904" /note="polarized growth protein Scy; Region: growth_prot_Scy; NF041483" /db_xref="CDD:469371" gene 1941947..1942696 /locus_tag="SF1905" /db_xref="GeneID:1025106" CDS 1941947..1942696 /locus_tag="SF1905" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707753.2" /db_xref="GeneID:1025106" /translation="MNTVTINNKQFPVIEYRGQRVVTLAMIDEVHQRPEGTARAAFNR NREHFISGVDYAELGADVIRTDLPEGTFSKFAPSGIVLFESGYLMLTKPFNDALAWQV QRELVNSYFRTRTPLTEIEMIAAIAADAVRQQKRLNHVEEQLETVTEAVETIKRGNMR AGYVGYRQVVAKSGMSDTKCRNLVNAYQIPTDTHEFMTPDGLLSRRAIVELEPFMAAF HQMMSEADPRGTRWYHPKMGLFQVIGWEDKA" misc_feature 1941980..1942222 /locus_tag="SF1905" /note="ORF6N domain; Region: ORF6N; pfam10543" /db_xref="CDD:431348" gene 1942693..1943262 /locus_tag="SF1906" /db_xref="GeneID:1025122" CDS 1942693..1943262 /locus_tag="SF1906" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707754.1" /db_xref="GeneID:1025122" /translation="MIIQSKLIRAALVCAAKNDVRYYLNGLHITPKHIEATNGSVALR MAHGIRTKKNIIVQFEGGVPAKAETTELIFSKEPIAVHRDQFQRRLSITGIKLVDGCF PDLDRIIPKKFDRCTHPVLQAGYLSYPEKMFGRERKFIPVQLRPSGDGQAVRIQFDSI INSMYGNPEFVVMPCRDHGDFNVAQEHPE" misc_feature <1942708..>1943037 /locus_tag="SF1906" /note="Beta clamp domain. The beta subunit (processivity factor) of DNA polymerase III holoenzyme, refered to as the beta clamp, forms a ring shaped dimer that encircles dsDNA (sliding clamp) in bacteria. The beta-clamp is structurally similar to the trimeric...; Region: beta_clamp; cl42470" /db_xref="CDD:478224" gene 1943386..1943628 /locus_tag="SF1906a" /db_xref="GeneID:16608335" CDS 1943386..1943628 /locus_tag="SF1906a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439258.1" /db_xref="GeneID:16608335" /translation="MFALIQRGQIYTDRAGYPVEITRSTEHSVFFRRMDGRTGRVRIG EFSSLFEHIDHLEYHKILAETEQEKHLKKLRAMQRK" misc_feature 1943395..1943547 /locus_tag="SF1906a" /note="Domain of unknown function (DUF4222); Region: DUF4222; pfam13973" /db_xref="CDD:372855" mobile_element complement(1943951..1945199) /mobile_element_type="insertion sequence:IS911" gene complement(1943959..1944798) /locus_tag="SF1907" /db_xref="GeneID:1025070" CDS complement(1943959..1944798) /locus_tag="SF1907" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_707755.1" /db_xref="GeneID:1025070" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature complement(1943968..1944777) /locus_tag="SF1907" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(1944825..1945163) /locus_tag="SF1908" /db_xref="GeneID:1025126" CDS complement(1944825..1945163) /locus_tag="SF1908" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_707756.1" /db_xref="GeneID:1025126" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature complement(1944855..1945124) /locus_tag="SF1908" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1945366..1945707 /gene="yecE" /locus_tag="SF1909" /pseudo /db_xref="GeneID:1025099" misc_feature 1945366..1945707 /gene="yecE" /locus_tag="SF1909" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788175 (273 aa). BLAST with identity of 99% in 114 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene 1945760..1946155 /gene="yecN" /locus_tag="SF1910" /db_xref="GeneID:1025096" CDS 1945760..1946155 /gene="yecN" /locus_tag="SF1910" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707757.2" /db_xref="GeneID:1025096" /translation="MVSALYAVLSALLLMKFSFDVVRLRMQYRVAYGDGGFSELQSAI CIHGNAVEYIPIAIVLMLFMEMNGAETWMVHICGIVLLAGRLMHYYGFHHRLFRWRRS GMSATWCALLLMVLANLWYMPWELVFSLR" misc_feature 1945760..1946137 /gene="yecN" /locus_tag="SF1910" /note="Uncharacterized membrane protein YecN, MAPEG domain [Function unknown]; Region: YecN; COG3788" /db_xref="CDD:443002" gene 1946196..1946939 /gene="yecO" /locus_tag="SF1911" /db_xref="GeneID:1025125" CDS 1946196..1946939 /gene="yecO" /locus_tag="SF1911" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="tRNA cmo(5)U34 methyltransferase" /protein_id="NP_707758.1" /db_xref="GeneID:1025125" /translation="MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIIS MIGMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHI DAYKAPTPVDVIEGDIRDIAIENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGAL VLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARL HKAGFEHSELWFQCFNFGSLVALKAEDAA" misc_feature 1946205..1946921 /gene="yecO" /locus_tag="SF1911" /note="tRNA (cmo5U34)-methyltransferase; Region: TIGR00740" /db_xref="CDD:273244" misc_feature order(1946382..1946402,1946460..1946465,1946541..1946549, 1946589..1946591) /gene="yecO" /locus_tag="SF1911" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 1946936..1947907 /gene="yecP" /locus_tag="SF1912" /db_xref="GeneID:1025124" CDS 1946936..1947907 /gene="yecP" /locus_tag="SF1912" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="tRNA mo(5)U34 methyltransferase" /protein_id="NP_707759.1" /db_xref="GeneID:1025124" /translation="MIDFGNFYSLIAKNHLSHWLETLPAQIANWQREQQHGLFKQWSN TVEFLPEIKPYRLDLLHSVTAESEEPLSTGQIKRIETLMRNLMPWRKGPFSLYGVNID TEWCSDWKWDRVLPHLSDLTGRTILDVGCGSGYHMWRMIGAGAHLAVGIDPTQLFLCQ FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN EGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSALALKNWLKKCGFVDIRIVDVC VTTTEEQRRTEWMVTESLSDFLDPHDPSKTVEGYPAPKRAVLIARKP" misc_feature 1946936..1947901 /gene="yecP" /locus_tag="SF1912" /note="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB; Region: PRK15068" /db_xref="CDD:237898" misc_feature order(1947320..1947340,1947389..1947394,1947470..1947478, 1947521..1947523) /gene="yecP" /locus_tag="SF1912" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(1948072..1950501) /gene="bisZ" /locus_tag="SF1913" /db_xref="GeneID:1025121" CDS complement(1948072..1950501) /gene="bisZ" /locus_tag="SF1913" /note="Code: C; COG: COG0243" /codon_start=1 /transl_table=11 /product="biotin sulfoxide reductase" /protein_id="NP_707760.2" /db_xref="GeneID:1025121" /translation="MALTRREFIKHSGIAAGALVVTSAAPLPAWAEEKGGKILTAGRW GAMSVEVKDGKIVSSTGALAKTIPNSLQSTAADQVHTTARIQHPMVRKSYLDNPLQPA KGRGEDTYVQVSWEQALKLIHEQHERIRKANGPSAIFAGSYGWRSSGVLHKAQTLLQR YMNLAGGYSGHSGDYSTGAAQVIMPHVVGSVEVYEQQASWPLILENSQVVVLWGMNPL NTLKIAWSSTDEQGLEYFHQLKKSGKPVIAIDPIRSETIEFFGDNATWIAPNMGTDVA LMLGIAHTLMTQGKHDKVFLEKYTTGYPQFEEYLTGKSDNTPKSAVWTAEITGVPEAQ IVKLAELMAANRTMLMAGWGIQRQQYGEQKHWMLVTLAAMLGQIGTPGGGFGFSYHYS NGGNPTRVGGVLPEMSAAIAGQASEAADDGGMTAIPVARIVDALENPGGKYQHNGKEQ TYPNIKMIWWAGGGNFTHHQDTNRLIKAWQKPEMIVVSECYWTAAAKHADIVLPITTS FERNDLTMTGDYSNQHIVPMKQAVAPQFEARNDFDVFADLAELLKPGGKEIYTEGKDE MAWLKFFYDAAQKGARAQRVTMPMFNAFWQQNKLIEMRRSEKNEQYVRYGDFRADPVK NALGTPSGKIEIYSKTLEKFGYKDCPAHPTWLAPDEWKGTADEKQLQLLTAHPAHRLH SQLNYAELRKKYAVADREPITIHTEDAARFGIANGDLVRVWNKRGQILTGAVVTDGIK KGVVCVHEGAWPDLENGLCKNGSANVLTADIPSSQRANACAGNSALVYIEKYTGNAPK LTAFDKPAVQA" misc_feature complement(1950409..1950495) /gene="bisZ" /locus_tag="SF1913" /note="Tat (twin-arginine translocation) pathway signal sequence; Region: TAT_signal_seq; TIGR01409" /db_xref="CDD:273604" misc_feature complement(1948078..1950381) /gene="bisZ" /locus_tag="SF1913" /note="molybdopterin guanine dinucleotide-containing S/N-oxide reductases; Region: bisC_fam; TIGR00509" /db_xref="CDD:273110" gene complement(1950526..1951626) /gene="yecK" /locus_tag="SF1914" /db_xref="GeneID:1025090" CDS complement(1950526..1951626) /gene="yecK" /locus_tag="SF1914" /note="Code: C; COG: COG3005" /codon_start=1 /transl_table=11 /product="cytochrome C-type protein" /protein_id="NP_707761.2" /db_xref="GeneID:1025090" /translation="MRGKKRIGLLFLLIAVVVGGGGLLLAQKALHKTSDTAFCLSCHS MSKPFEEYQGTVHFSNQKGIRAECADCHIPKSGMDYLFAKLKASKDIYHEFVSGKIDS DDKFETHRQEMAETVWKELKATDSATCRSCHSFDAMDIASQSESAQKMHNKAQKGGET CIDCHKGIAHFPPEIKMDDNAAHELESQAATSVTNGAHIYPFKTSRIGELATVNPGTD LTVVDASGKQPIVLLQGYQMQGSENTLYLAAGQRLALATLSEEGIKALTVNGEWQADE YGNQWRQASLQGALTDPALADRKPLWQYAEKLDDTYCAGCHASIAADHYTVNAWPSIA KGMGARTSMSENEPDILTRYFQYNAKDITEKQ" misc_feature complement(1951105..1951548) /gene="yecK" /locus_tag="SF1914" /note="NapC/NirT cytochrome c family, N-terminal region; Region: Cytochrom_NNT; pfam03264" /db_xref="CDD:427224" misc_feature complement(1950532..1951542) /gene="yecK" /locus_tag="SF1914" /note="trimethylamine-N-oxide reductase c-type cytochrome TorC; Region: torC; TIGR02162" /db_xref="CDD:274003" gene complement(1952014..1952760) /gene="cutC" /locus_tag="SF1915" /db_xref="GeneID:1025143" CDS complement(1952014..1952760) /gene="cutC" /locus_tag="SF1915" /note="Code: P; COG: COG3142" /codon_start=1 /transl_table=11 /product="copper homeostasis protein" /protein_id="NP_707762.3" /db_xref="GeneID:1025143" /translation="MALLEICCYSMECALTAQQNGADRVELCAAPKEGGLTPSLGVLK SVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVD MPRMEKIMAAAGPLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSDALQGLSK IMELIAHRDAPIIMAGAGVRAENLHHFLDAGVLEVHSSAGAWQASPMRYRNQGLSMSS DEHADEYSRYIVDGAAVAEMKGIIERHQAK" misc_feature complement(1952017..1952760) /gene="cutC" /locus_tag="SF1915" /note="copper homeostasis protein CutC; Provisional; Region: PRK11572" /db_xref="CDD:183208" gene complement(1952774..1953340) /gene="yecM" /locus_tag="SF1916" /db_xref="GeneID:1025111" CDS complement(1952774..1953340) /gene="yecM" /locus_tag="SF1916" /note="Code: S; COG: COG3102" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707763.2" /db_xref="GeneID:1025111" /translation="MANWQSIDELQDIASDLPRFTHALDELSRRLGLDITPLTADHIS LRCHQNVTAERWRRGFEQCGELLSEKMINGRPICLFKLHEPVQVAHWQFSNVELPWPG EKRYPHEGWEHIEIVLPGDPETLNARALALLSDEGLSLPGISVKTSSPKGEHERLPNP TLAVTDGKTTIKFHPWSIEEIVASEQSA" misc_feature complement(1952780..1953340) /gene="yecM" /locus_tag="SF1916" /note="VOC family protein; Region: PRK11700" /db_xref="CDD:236957" gene 1953556..1955289 /gene="argS" /locus_tag="SF1917" /db_xref="GeneID:1025108" CDS 1953556..1955289 /gene="argS" /locus_tag="SF1917" /note="Code: J; COG: COG0018" /codon_start=1 /transl_table=11 /product="arginyl-tRNA synthetase" /protein_id="NP_707764.1" /db_xref="GeneID:1025108" /translation="MNIQALLSEKVRQAMIAAGAPADCEPQIRQSAKVQFGDYQANGM MAVAKKLGMAPRQLAEQVLTHLDLNGIASKVEIAGPGFINIFLDPAFLAEHVQQALAS DRLGVATPEKQTIVVDYSAPNVAKEMHVGHLRSTIIGDTAVRTLEFLGHKVIRANHVG DWGTQFGMLIAWLEKQQQENAGEMELADLEGFYRDAKKHYDEDEEFAERARNYVVKLQ SGDEYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG LAVESEGATVVFLDVFKNKEGEPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL YYIDSRQHQHLMQAWAIVRKAGYVPESVPLEHHMFGMMLGKDGKPFKTRAGGTVKLAD LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML AFEGNTAPYMQYAYTRVLSVFRKAEINEEQLAAAPVIIREDREAQLAARLLQFEETLT VVAREGTPHVMCAYLYDLAGLFSGFYEHCPILSAENEEVRNSRLKLAQLTAKTLKLGL DTLGIETVERM" misc_feature 1953556..1955286 /gene="argS" /locus_tag="SF1917" /note="Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: ArgS; COG0018" /db_xref="CDD:439789" gene 1955466..1955954 /gene="yecT" /locus_tag="SF1918" /db_xref="GeneID:1025110" CDS 1955466..1955954 /gene="yecT" /locus_tag="SF1918" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707765.1" /db_xref="GeneID:1025110" /translation="MFKFLVLTLGIISCQAYAEDTVIVNDHDTSAIKDCWQKNSDDDT DINVIKSCLRQEYNLVDAQLNKAYGEAYRYIEQVPRTGAKKLDTEQLNLLKKSQRAWL DFRDKECELILSNEDVQDLSDPYSESEWLSCMIIQTNTRTRQLQLYRNSEDFYPSPLT RG" misc_feature 1955475..1955918 /gene="yecT" /locus_tag="SF1918" /note="Uncharacterized conserved protein YecT, DUF1311 family [Function unknown]; Region: YecT; COG3755" /db_xref="CDD:442969" mobile_element complement(1956132..1956562) /note="partial" /mobile_element_type="insertion sequence:IS629" gene complement(1956174..1957046) /locus_tag="SF1919" /pseudogene="unknown" /db_xref="GeneID:1025085" mobile_element complement(1956563..1957423) /note="partial" /mobile_element_type="insertion sequence:IS629" gene complement(1957043..1957369) /locus_tag="SF1921" /db_xref="GeneID:1025098" CDS complement(1957043..1957369) /locus_tag="SF1921" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_707768.1" /db_xref="GeneID:1025098" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNNILRLASAYFAKAEF DRLWKK" misc_feature complement(1957079..1957366) /locus_tag="SF1921" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(1957421..1957759) /gene="flhE" /locus_tag="SF1922" /db_xref="GeneID:1023687" CDS complement(1957421..1957759) /gene="flhE" /locus_tag="SF1922" /codon_start=1 /transl_table=11 /product="flagellar protein FlhE" /protein_id="NP_707769.2" /db_xref="GeneID:1023687" /translation="MRTLLAILLFPLLVQAAGEGMWQASSVGITLNHRGESMSSAPLS ARQPASGLMTLVAWRYQLIGPTPAGLRVRLCSQSRCVELEGQSGTTVAFSGIAAAEPL RFIWEVPGGG" misc_feature complement(1957424..1957678) /gene="flhE" /locus_tag="SF1922" /note="Flagellar protein FlhE; Region: FlhE; pfam06366" /db_xref="CDD:428903" gene complement(1957761..1959836) /gene="flhA" /locus_tag="SF1923" /pseudo /db_xref="GeneID:1025167" misc_feature complement(1957761..1959836) /gene="flhA" /locus_tag="SF1923" /note="Similar to Escherichia coli K12 flagellar biosynthesis; possible export of flagellar proteins gi: 1788187 (693 aa). BLAST with identity of 99% in 691 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(1959783..1960976) /gene="flhB" /locus_tag="SF1924" /db_xref="GeneID:1025091" CDS complement(1959783..1960976) /gene="flhB" /locus_tag="SF1924" /note="Code: N; COG: COG1377" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FlhB" /protein_id="NP_707770.1" /db_xref="GeneID:1025091" /translation="MSDESDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVSV IWFGGVSLARRLSGMLSAGLHFDHSIIKDPNLILGQIILLIREAMLALLPLISGVVLV ALISPVMLGGLVFSGKSLQPKFSKLNPLPGIKRIFSAQTSAELLKAILKTILVGSVTG FFLWHHWPQMMRLMAESPITAMGNAMDLVGLCALLVVLGVIPMVGFDVFFQIFSHLKK LRMSRQDIRDEFKQSEGDPHVKGRICQMQRAAARRRMMADVPKADVIVNNPTHYSVAL QYDENKMSAPKVVAKGAGLVALRIREIGAENNVPTLEAPPLARALYRHAEIGQQIPGQ LYAAVAEVLAWVWQLKRWRLAGGQRPVHLLIFRCRQPWILLTRNRPMSNLAAMLRLPA NLKST" misc_feature complement(1959903..1960976) /gene="flhB" /locus_tag="SF1924" /note="flagellar type III secretion system protein FlhB; Region: flhB; PRK05702" /db_xref="CDD:235569" mobile_element complement(1961597..1962845) /mobile_element_type="insertion sequence:IS911" gene complement(1961605..1962444) /locus_tag="SF1925" /db_xref="GeneID:1027577" CDS complement(1961605..1962444) /locus_tag="SF1925" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_707771.1" /db_xref="GeneID:1027577" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature complement(1961614..1962423) /locus_tag="SF1925" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(1962471..1962809) /locus_tag="SF1926" /db_xref="GeneID:1025159" CDS complement(1962471..1962809) /locus_tag="SF1926" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_707772.1" /db_xref="GeneID:1025159" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature complement(1962501..1962770) /locus_tag="SF1926" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 1962914..1963309 /locus_tag="SF1927" /db_xref="GeneID:1025093" CDS 1962914..1963309 /locus_tag="SF1927" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707773.1" /db_xref="GeneID:1025093" /translation="MNVVSNTQLLEQRIADFFTLSDEHKKARVLLDTLACSCPARIFG GMVRDLGLYGVDGFSSDLDIVIGRSREELFQTLAELPVKQLRFNKFGGIRFRYHDFEF DIWNLNETWAFQEKLIFCEDESSLLNEVA" mobile_element 1963297..1964560 /mobile_element_type="insertion sequence:IS600" gene 1963699..1964517 /locus_tag="SF1928" /db_xref="GeneID:1025097" CDS 1963699..1964517 /locus_tag="SF1928" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707774.1" /db_xref="GeneID:1025097" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHYSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <1963699..1964490 /locus_tag="SF1928" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(1965021..1965665) /gene="cheZ" /locus_tag="SF1930" /db_xref="GeneID:1025145" CDS complement(1965021..1965665) /gene="cheZ" /locus_tag="SF1930" /note="Code: N; COG: COG3143" /codon_start=1 /transl_table=11 /product="chemotaxis regulator CheZ" /protein_id="NP_707776.2" /db_xref="GeneID:1025145" /translation="MMQPSIKPADEHSAGDIIARIGSLTHMLRDSLRELGLVQAIAEA AEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPI DLADARELVTDTRQFLADVPAHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIE RQLLMVLLENIPEQESRPKRENQSLLNGPQVDTSKAGVVASQDQVDDLLDSLGF" misc_feature complement(1965024..1965665) /gene="cheZ" /locus_tag="SF1930" /note="chemotaxis regulator CheZ; Provisional; Region: PRK11166" /db_xref="CDD:236868" gene complement(1965676..1966065) /gene="cheY" /locus_tag="SF1931" /db_xref="GeneID:1025094" CDS complement(1965676..1966065) /gene="cheY" /locus_tag="SF1931" /note="Code: T; COG: COG0784" /codon_start=1 /transl_table=11 /product="chemotaxis regulatory protein CheY" /protein_id="NP_707777.1" /db_xref="GeneID:1025094" /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN KLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAG ASGYVVKPFTAATLEEKLNKIFEKLGM" misc_feature complement(1965679..1966065) /gene="cheY" /locus_tag="SF1931" /note="chemotaxis protein CheY; Region: PRK10610" /db_xref="CDD:170568" gene complement(1966080..1967129) /gene="cheB" /locus_tag="SF1932" /db_xref="GeneID:1025137" CDS complement(1966080..1967129) /gene="cheB" /locus_tag="SF1932" /note="Code: NT; COG: COG2201" /codon_start=1 /transl_table=11 /product="chemotaxis-specific methylesterase" /protein_id="NP_707778.1" /db_xref="GeneID:1025137" /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI DFVTKPQLGIREGMLAYSEMIAEKVRTAAKASLAAHKPLSAPTTLKAGPLLSSEKLIA IGASTGGTEAIRHVLQPLPLSSPALLITQHMPPGFTRSFADRLNKLCQIGVKEAEDGE RVLPGHAYIAPGDRHMELARSGANYQIKIHDGPAVNRHRPSVDVLFHSVAKQAGRNAV GVILTGMGNDGAAGMLAMRQAGAWTLAQNEASCVVFGMPREAINMGGVCEVVDLSQVS QQMLATISAGQAIRI" misc_feature complement(1966095..1967129) /gene="cheB" /locus_tag="SF1932" /note="chemotaxis-specific protein-glutamate methyltransferase CheB; Region: PRK00742" /db_xref="CDD:234828" gene complement(1967132..1967992) /gene="cheR" /locus_tag="SF1933" /db_xref="GeneID:1025135" CDS complement(1967132..1967992) /gene="cheR" /locus_tag="SF1933" /note="Code: NT; COG: COG1352" /codon_start=1 /transl_table=11 /product="chemotaxis methyltransferase CheR" /protein_id="NP_707779.1" /db_xref="GeneID:1025135" /translation="MTSSLPCGQTSLLLQMTERLALSDAHFRRISQLIYQRAGIVLAD HKRDMVYNRLVRRLRSLGLTDFGHYLNLLESNQHSGEWQAFINSLTTNLTAFFREAHH FPLLADHARRRSGEDRVWSAAASTGEEPYSIAMTLADTLGTVPGRWKVFASDIDTEVL EKARSGIYRHEELKNLTPQQLQRYFMRGTGPHEGLVRVRQELANYVDFAPLNLLAKQY TVPGPFDAIFCRNVMIYFDQTTQQEILRRFVPLLKPDGLLFAGHSENFSHLERRFTLR GQTVYALSKD" misc_feature complement(1967135..1967992) /gene="cheR" /locus_tag="SF1933" /note="protein-glutamate O-methyltransferase CheR; Region: PRK10611" /db_xref="CDD:236725" gene complement(1968011..1969612) /gene="tap" /locus_tag="SF1934" /db_xref="GeneID:1025109" CDS complement(1968011..1969612) /gene="tap" /locus_tag="SF1934" /note="Code: N; COG: COG0840" /codon_start=1 /transl_table=11 /product="methyl-accepting protein IV" /protein_id="NP_707780.2" /db_xref="GeneID:1025109" /translation="MFNRIRISTTLFLILILCGILQIGSNGMSFWAFRDDLQRLNHGE QSNQQRAALAQTRAVMLQASTALNKAGTLTALSYPADDIKTLMTTARASLTQSTTLFK SFMAMTAGNEHVRALQKETEKSFARWHNDLEHQATWLESNQLSDFLTAPVQGSQNAFD VNFEAWQLEINHVLEAASAQSQRNYQISALVFISMIIVAAIYISSALWWTRKMIVQPL AIIGSHFDSIAAGNLARPIAVYGRNEITAIFASLKTMQQALRGTVSDVRKGSHEMHIG IAEIVAGNNDLSSRTEQQAASLAQTAASMEQLTATVGQNADNARQASELAKNAATTAQ AGGVQVSTMTHTMQEIATSSQKIGDIISVIDGIAFQTNILALNAAVEAARAGEQGRGF AVVAGEVRNLASRSAQAAKEIKGLIEESVNRVQQGSKLVNNAAATMTDIVSSVTRVND IMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNSSLVEEAAVATEQLANQADHLSSRV AVFTLEEHEVARHESAQLQIAPVVS" misc_feature complement(1968014..1969612) /gene="tap" /locus_tag="SF1934" /note="methyl-accepting chemotaxis protein IV; Region: PRK09793" /db_xref="CDD:182079" misc_feature complement(order(1968143..1968148,1968155..1968157, 1968164..1968169,1968176..1968178,1968185..1968190, 1968194..1968199,1968206..1968211,1968215..1968220, 1968227..1968229,1968236..1968241,1968248..1968250, 1968257..1968262,1968269..1968274,1968278..1968283, 1968290..1968292,1968299..1968304,1968311..1968313, 1968320..1968325,1968362..1968367,1968374..1968379, 1968383..1968388,1968395..1968400,1968407..1968409, 1968416..1968421,1968428..1968430,1968437..1968439, 1968449..1968451,1968470..1968472,1968479..1968481, 1968491..1968493,1968500..1968505,1968512..1968514, 1968521..1968523,1968530..1968535,1968542..1968547, 1968554..1968556,1968563..1968568,1968572..1968574, 1968584..1968589,1968593..1968598,1968605..1968607, 1968614..1968619,1968626..1968631,1968638..1968640, 1968647..1968652,1968659..1968661,1968668..1968673, 1968677..1968682,1968689..1968691,1968698..1968703, 1968710..1968715)) /gene="tap" /locus_tag="SF1934" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature complement(1968404..1968505) /gene="tap" /locus_tag="SF1934" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" gene complement(1969658..1971319) /gene="tar" /locus_tag="SF1935" /db_xref="GeneID:1025140" CDS complement(1969658..1971319) /gene="tar" /locus_tag="SF1935" /note="Code: N; COG: COG0840" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein II" /protein_id="NP_707781.2" /db_xref="GeneID:1025140" /translation="MINRIRVVTLLVMVLGVFALLQLISGSLFFSSLHHSQKSFVVSN QLREQQGELTSTWDLMLQTRINLSRSAVRMMMDSSNQQSNAKVELLDSARKTLAQAAT HYKKFKSMAPLPEMVATSRNFDEKYKNYYTALTELIDYLDYGNTGAYFAQPTQGMQNA MGEAFAQYALSSEKLYRDIVTDNADDYRFAQWQLAVIALVVVLILLVAWYGIRRMLLT PLAKIIAHICEIAGGNLANTLTIDGRSEMGDLAQSVSHMQRSLTDTVTHVREGSDAIY AGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASDT AQHGGKVVDGVVKTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGR GFAVVAGEVRNLASRSALAAKEIKALIEDSVSRIDTGSVLVESAGETMNNIVNAVTRV TDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQ AVSAFRLAASPLTNKPQTPSRPASEQPPAQPRLRITEQDPNWETF" misc_feature complement(1969661..1971319) /gene="tar" /locus_tag="SF1935" /note="methyl-accepting chemotaxis protein II; Provisional; Region: PRK15048" /db_xref="CDD:185008" misc_feature complement(order(1969856..1969858,1969865..1969870, 1969877..1969879,1969886..1969891,1969895..1969900, 1969907..1969912,1969916..1969921,1969928..1969930, 1969937..1969942,1969949..1969951,1969958..1969963, 1969970..1969975,1969979..1969984,1969991..1969993, 1970000..1970005,1970012..1970014,1970021..1970026, 1970063..1970068,1970075..1970080,1970084..1970089, 1970096..1970101,1970108..1970110,1970117..1970122, 1970129..1970131,1970138..1970140,1970150..1970152, 1970171..1970173,1970180..1970182,1970192..1970194, 1970201..1970206,1970213..1970215,1970222..1970224, 1970231..1970236,1970243..1970248,1970255..1970257, 1970264..1970269,1970273..1970275,1970285..1970290, 1970294..1970299,1970306..1970308,1970315..1970320, 1970327..1970332,1970339..1970341,1970348..1970353, 1970360..1970362,1970369..1970374,1970378..1970383, 1970390..1970392,1970399..1970404,1970411..1970416)) /gene="tar" /locus_tag="SF1935" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature complement(1970105..1970206) /gene="tar" /locus_tag="SF1935" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" gene complement(1971464..1971967) /gene="cheW" /locus_tag="SF1936" /db_xref="GeneID:1023709" CDS complement(1971464..1971967) /gene="cheW" /locus_tag="SF1936" /note="Code: N; COG: COG0835" /codon_start=1 /transl_table=11 /product="purine-binding chemotaxis protein" /protein_id="NP_707782.1" /db_xref="GeneID:1023709" /translation="MTGMTNVTKLASEPSGQEFLVFTLGDEEYGIDILKVQEIRGYDQ VTRIANTPAFIKGVTNLRGVIVPIVDLRIKFSQVDVDYNDNTVVIVLNLGQRVVGIVV DGVSDVLSLTAEQIRPAPEFAVTLSTEYLTGLGALGDRMLILVNIEKLLNSEEMALLD SAASEVA" misc_feature complement(1971467..1971967) /gene="cheW" /locus_tag="SF1936" /note="chemotaxis protein CheW; Region: PRK10612" /db_xref="CDD:182587" misc_feature complement(order(1971503..1971526,1971683..1971685, 1971689..1971691,1971773..1971790)) /gene="cheW" /locus_tag="SF1936" /note="putative CheA interaction surface [active]" /db_xref="CDD:238374" gene complement(1971988..1973952) /gene="cheA" /locus_tag="SF1937" /db_xref="GeneID:1025139" CDS complement(1971988..1973952) /gene="cheA" /locus_tag="SF1937" /note="Code: N; COG: COG0643" /codon_start=1 /transl_table=11 /product="chemotaxis protein CheA" /protein_id="NP_707783.2" /db_xref="GeneID:1025139" /translation="MSIDISDFYQTFFDEADELLADMEQHLLVLQPEAPDAEQLNAIF RAAHSIKGGAGTFGFSVLQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQL DAYKQSQEPDAASYDYICQALRQLALEAKGETPSAVTRLSVVAKSEPQDEQSRSQLPR RIILSRLKAGEVDLLEEELGHLTTLNDVVKGADSLSAILPGDIAEDDITAVLCFVIEA DQITFETVEVSPKIATPPVLKLAAEQAPTGRVEREKTTRSSESTSIRVAVEKVDQLIN LVGELVITQSMLAQRSSELDPVNHGDLITSMGQLQRNARDLQESVMSIRMMPMEYVFS RYPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLTHLVRNSLDHGIELPEKR LAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERILAKAASQGLTVSENMSDDEV AMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEIQSKQGTGTTIRILLPLT LAILDGMSVRVADEVFILPLNAVMESLQPREADLHPLAGGERVLEVRGEYLPIVELWK VFNVAGAKTEATQGIVVILQSGGRRYALLVDQLIGQHQVVVKNLESNYRKVPGISAAT ILGDGSVALIVDVSALQAINREQRMANTAA" misc_feature complement(1971991..1973946) /gene="cheA" /locus_tag="SF1937" /note="chemotaxis protein CheA; Provisional; Region: PRK10547" /db_xref="CDD:236712" gene complement(1973957..1974883) /gene="motB" /locus_tag="SF1938" /db_xref="GeneID:1025131" CDS complement(1973957..1974883) /gene="motB" /locus_tag="SF1938" /note="Code: N; COG: COG1360" /codon_start=1 /transl_table=11 /product="flagellar motor protein MotB" /protein_id="NP_707784.1" /db_xref="GeneID:1025131" /translation="MKNQAHPIIVVKRRKAKSHGAAHGSWKIAYADFMTAMMAFFLVM WLISISSPKELIQIAEYFRTPLATAVTGGDRISNSESPIPGGGDDYTQSQGEVNKQPN IEELKKRMEQSRLRKLRGDLDQLIESDPKLRALRLHLKIDLVQEGLRIQIIDSQNRPM FRTGSADVEPYMRDILRAIAPVLNGIPNRISLSGHTDDFPYASGEKGYSNWELSADRA NASRRELMVGGLDSGKVLRVVGMAATMRLSDRGPDDAVNRRISLLVLNKQAEQAILHE NAESQNEPVSALEKPEVAPQVSVPTMPSAEPR" misc_feature complement(1973960..1974883) /gene="motB" /locus_tag="SF1938" /note="motility protein MotB; Region: motB; PRK09041" /db_xref="CDD:236365" gene complement(1974880..1975767) /gene="motA" /locus_tag="SF1939" /db_xref="GeneID:1025123" CDS complement(1974880..1975767) /gene="motA" /locus_tag="SF1939" /note="Code: N; COG: COG1291" /codon_start=1 /transl_table=11 /product="flagellar motor protein MotA" /protein_id="NP_707785.1" /db_xref="GeneID:1025123" /translation="MLILLGYLVVLGTVFGGYLMTGGSLGALYQPAELVIIAGAGIGS FIVGNNGKAIKGTLKALPLLFRRSKYTKAMYMDLLALLYRLMAKSRQMGMFSLERDIE NPRESEIFASYPRILADSVMLDFIVDYLRLIISGHMNTFEIEALMDEEIETHESEAEV PANSLALVGDSLPAFGIVAAVMGGVHALGSADRPAAELGALIAHAMVGTFLGILLAYG FISPLASVLRQKSAETSKMMQCVKVTLLSNLNGYAPPIAVEFGRKTLYSSERPSFIEL EEHVRAVKNPQQQTTTEEA" misc_feature complement(1974919..1975767) /gene="motA" /locus_tag="SF1939" /note="flagellar motor stator protein MotA; Region: PRK09110" /db_xref="CDD:181655" gene complement(1975894..1976472) /gene="flhC" /locus_tag="SF1940" /db_xref="GeneID:1025138" CDS complement(1975894..1976472) /gene="flhC" /locus_tag="SF1940" /codon_start=1 /transl_table=11 /product="transcriptional activator FlhC" /protein_id="NP_707786.1" /db_xref="GeneID:1025138" /translation="MSEKSIVQEARDIQLAMELITLGARLQMLESETQLSRGRLIKLY KELRGSPPPKGMLPFSTDWFMTWEQNVHASMFCNAWQFLLKTGLCNGVDAVIKAYRLY LEQCPQAEEGPLLALTRAWTLVRFVESGLLQLSSCNCCGGNFITHAHQPVGSFACSLC QPPSRAVKRRKLSQNPADIIPQLLDEQRVQAV" misc_feature complement(1975912..1976472) /gene="flhC" /locus_tag="SF1940" /note="flagellar transcriptional regulator FlhC; Region: PRK12722" /db_xref="CDD:237181" mobile_element 1976680..1977447 /mobile_element_type="insertion sequence:IS1" gene 1976735..1977010 /gene="insA" /locus_tag="SF1941" /db_xref="GeneID:1025112" CDS 1976735..1977010 /gene="insA" /locus_tag="SF1941" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707787.1" /db_xref="GeneID:1025112" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 1976756..>1977007 /gene="insA" /locus_tag="SF1941" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 1977037..1977432 /gene="insB" /locus_tag="SF1942" /db_xref="GeneID:1025134" CDS 1977037..1977432 /gene="insB" /locus_tag="SF1942" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707788.1" /db_xref="GeneID:1025134" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 1977040..1977429 /gene="insB" /locus_tag="SF1942" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(1977451..1977895) /gene="otsA" /locus_tag="SF1943" /pseudo /db_xref="GeneID:1025129" misc_feature complement(1977451..1977895) /gene="otsA" /locus_tag="SF1943" /note="Similar to Escherichia coli K12 trehalose-6-phosphate synthase gi: 1788206 (475 aa). BLAST with identity of 97% in 148 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(1977870..1978670) /gene="otsB" /locus_tag="SF1944" /db_xref="GeneID:1025133" CDS complement(1977870..1978670) /gene="otsB" /locus_tag="SF1944" /note="Code: G; COG: COG1877" /codon_start=1 /transl_table=11 /product="trehalose-6-phosphate phosphatase" /protein_id="NP_707789.2" /db_xref="GeneID:1025133" /translation="MTEPLTETPELSAKYAWFFDLDGTLAEIKPHPDQVVVPDNILQG LQLLATASDGALALISGRSMVELDALAKPYRFPLAGVHGAERRDINGKTHIVHLPDAI ARDISVQLHTVIAQYPGAELEAKGMAFALHYRQAPQHEDALMTLAQRITQIWPQMALQ QGKCVVEIKPRGTSKGEAIAAFMQEAPFIGRTPVFLGDDLTDESGFAVVNRLGGMSVK IGTGATQASWRLAGVPDVWSWLEMITAALQQKRENNRSDDYESFSRSI" misc_feature complement(1977873..1978670) /gene="otsB" /locus_tag="SF1944" /note="trehalose-6-phosphate phosphatase; Provisional; Region: PRK10187" /db_xref="CDD:182291" misc_feature complement(order(1978065..1978070,1978077..1978082, 1978146..1978148,1978170..1978172,1978176..1978178, 1978182..1978184,1978269..1978271,1978275..1978277, 1978281..1978283,1978296..1978298,1978302..1978304, 1978425..1978427,1978485..1978493,1978575..1978577, 1978587..1978592,1978599..1978613)) /gene="otsB" /locus_tag="SF1944" /note="active site" /db_xref="CDD:319767" misc_feature complement(order(1978065..1978070,1978074..1978082, 1978146..1978148,1978164..1978166,1978170..1978172, 1978176..1978178,1978182..1978184,1978275..1978277, 1978281..1978283,1978296..1978298,1978302..1978304, 1978425..1978430,1978461..1978466,1978479..1978481, 1978485..1978493,1978575..1978577,1978587..1978589, 1978599..1978613)) /gene="otsB" /locus_tag="SF1944" /note="active site pocket [active]" /db_xref="CDD:319767" gene complement(1978837..1979826) /gene="araH" /locus_tag="SF1945" /db_xref="GeneID:1025166" CDS complement(1978837..1979826) /gene="araH" /locus_tag="SF1945" /note="Code: G; COG: COG1172" /codon_start=1 /transl_table=11 /product="L-arabinose transporter permease" /protein_id="NP_707790.1" /db_xref="GeneID:1025166" /translation="MMSSVSTSGSGAPKSSFSFGRIWDQYGMLVVFAVLFIACAIFVP NFATFINMKGLGLAISMSGMVACGMLFCLASGDFDLSVASVIACAGVTTAVVINLTES LWIGVAAGLLLGVLCGLVNGFVIAKLKINALITTLATMQIVRGLAYIISDGKAVGIED ESFFALGYANWFGLPAPIWLTVACLIIFGLLLNKTTFGRNTLAIGGNEEAARLAGVPV VRTKIIIFVLSGLVSAIAGIILASRMTSGQPMTSIGYELIVISACVLGGVSLKGGIGK ISYVVAGILILGTVENAMNLLNISPFAQYVVRGLILLAAVIFDRYKQKAKRTV" misc_feature complement(1978840..1979823) /gene="araH" /locus_tag="SF1945" /note="L-arabinose transporter permease protein; Provisional; Region: araH; PRK11285" /db_xref="CDD:183076" misc_feature complement(1979146..1979202) /gene="araH" /locus_tag="SF1945" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119321" gene complement(1979838..1981352) /gene="araG" /locus_tag="SF1946" /db_xref="GeneID:1025151" CDS complement(1979838..1981352) /gene="araG" /locus_tag="SF1946" /note="Code: G; COG: COG1129" /codon_start=1 /transl_table=11 /product="L-arabinose transporter ATP-binding protein" /protein_id="NP_707791.2" /db_xref="GeneID:1025151" /translation="MQQSTPYLSFRGIGKTFPGVKALTDISFDCYAGQVHALMGENGA GKSTLLKILSGNYAPTTGSVVINGQEMSFSDTTAALNAGVAIIYQELHLVPEMTVAEN IYLGQLPHKGGIVNRSLLNYEAGLQLKHLGMDIDPDTPLKYLAIGQWQMVEIAKALAR NAKIIAFDEPTSSLSAREIGNLFRVIRELRKEGRVILYVSHRMEEIFALSDAITVFKD GRYVKTFTDMQQVDHDALVQAMVGRDIGDIYGWQPRSYGEERLRLDAVKALGVRTPIS LAVRSGEIVGLFGLVGAGRSELMKGLFGGTQITAGQVYIDQQPIDIRKPSHAIAAGMM LCPEARKAEGIIPVHSVRDNINISARRKHVLGGCVINNSWEENNADQHIRSLNIKTPG AEQLIMNLSGGNQQKAILGRWLSEEMKVILLDEPTRGIDVGAKHEIYNVIYALAAQGV AVLFASSDLPEVLGVADRIVVMREGEIAGELLHEQADERQALSLAMPKVSQAVA" misc_feature complement(1979841..1981343) /gene="araG" /locus_tag="SF1946" /note="L-arabinose ABC transporter ATP-binding protein AraG; Region: araG; PRK11288" /db_xref="CDD:183077" gene complement(1981422..1982411) /gene="araF" /locus_tag="SF1947" /pseudo /db_xref="GeneID:1025202" misc_feature complement(1981422..1982411) /gene="araF" /locus_tag="SF1947" /note="Similar to Escherichia coli K12 L-arabinose-binding periplasmic protein gi: 1788211 (330 aa). BLAST with identity of 97% in 329 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 1983208..1983711 /gene="yecI" /locus_tag="SF1948" /db_xref="GeneID:1025142" CDS 1983208..1983711 /gene="yecI" /locus_tag="SF1948" /note="Code: P; COG: COG1528" /codon_start=1 /transl_table=11 /product="ferritin" /protein_id="NP_707792.1" /db_xref="GeneID:1025142" /translation="MATAGMLLKLNSQMNREFYASNLYLHLSNWCSEQSLNGTATFLR AQAQSNVTQMMRMFNFMKSVGATPIVKAIDVPGEKLNSLEELFQKTMEEYEQRSSTLA QLADEAKELNDDSTVNFLRDLEKEQQHDGLLLQTILDEVRSAKLAGMCPVQTDQHVLN VVSHQLH" misc_feature 1983208..1983708 /gene="yecI" /locus_tag="SF1948" /note="non-heme ferritin-like protein; Region: PRK15022" /db_xref="CDD:184983" misc_feature order(1983256..1983258,1983352..1983357,1983364..1983366, 1983487..1983489,1983583..1983585,1983592..1983597) /gene="yecI" /locus_tag="SF1948" /note="ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153113" gene complement(1983791..1984042) /locus_tag="SF1950a" /db_xref="GeneID:16608336" CDS complement(1983791..1984042) /locus_tag="SF1950a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439259.1" /db_xref="GeneID:16608336" /translation="MSQPLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQ LKNIDFTHHPAAADPVTMRAIQKAIALIELKFTPQGESH" misc_feature complement(1983806..1984042) /locus_tag="SF1950a" /note="Protein of unknown function (DUF2766); Region: DUF2766; pfam10964" /db_xref="CDD:431561" gene 1984506..1984829 /locus_tag="SF1950" /db_xref="GeneID:1025132" CDS 1984506..1984829 /locus_tag="SF1950" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707794.1" /db_xref="GeneID:1025132" /translation="MRLLILTLSLITLAGCTVTRQAHVSEVDAATGIVRLVYDQAFLQ HAHTDRYVSRGIADRACQQEGYTHAIPFGQPVGNCSLFAGSLCLNTEFTLSYQCHHSA FPVFL" misc_feature 1984581..1984799 /locus_tag="SF1950" /note="YecR-like lipoprotein; Region: YecR; pfam13992" /db_xref="CDD:404813" gene 1985000..1985497 /gene="ftn" /locus_tag="SF1951" /db_xref="GeneID:1027444" CDS 1985000..1985497 /gene="ftn" /locus_tag="SF1951" /note="Code: P; COG: COG1528" /codon_start=1 /transl_table=11 /product="ferritin" /protein_id="NP_707795.2" /db_xref="GeneID:1027444" /translation="MLKPEMIEKLNEQMNLELYSSLLYQQMSAWCSYHTFEGAAAFLR RHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSLDELFQETYKHEQLITQKIN ELAHAAMTNQDYPTFNFLQWYVSEQHEEEKLFKSIIDKLSLAGKSGEGLYFIDKELST LDTQN" misc_feature 1985000..1985494 /gene="ftn" /locus_tag="SF1951" /note="non-heme ferritin; Region: PRK10304" /db_xref="CDD:182367" misc_feature order(1985048..1985050,1985144..1985149,1985156..1985158, 1985279..1985281,1985375..1985377,1985384..1985389) /gene="ftn" /locus_tag="SF1951" /note="ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153113" gene complement(1985534..1985773) /gene="yecH" /locus_tag="SF1952" /db_xref="GeneID:1025184" CDS complement(1985534..1985773) /gene="yecH" /locus_tag="SF1952" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707796.1" /db_xref="GeneID:1025184" /translation="MDSIHGHEVLNMMIESGEQYTHASLEAAIKARFGEQARFHTCSA EGVTAGELVAFLAAKGKFIPSEEGFSTDQSKICRH" misc_feature complement(1985537..1985767) /gene="yecH" /locus_tag="SF1952" /note="probable metal-binding protein; Region: matur_matur; TIGR03853" /db_xref="CDD:163565" gene 1985963..1987174 /gene="tyrP" /locus_tag="SF1953" /db_xref="GeneID:1025130" CDS 1985963..1987174 /gene="tyrP" /locus_tag="SF1953" /note="Code: E; COG: COG0814" /codon_start=1 /transl_table=11 /product="tyrosine transporter TyrP" /protein_id="NP_707797.1" /db_xref="GeneID:1025130" /translation="MKNRTLGSVFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLW ALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA GELLASSISDWTGISMSATAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVVM LVLLLPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMDGNIRKLRWVF IIGSAIPLVAYIFWQVATLGSIDSTTFMGLLANHAGLNGLLQALREMVASPHVELAVH LFADLALATSFLGVALGLFDYLADLFQRSNTVGGRLQTGAITFLPPLAFALFYPRGFV MALGYAGVALAVLALIIPSLLTWQSRKHNPQAGYRVKGGRPALVVVFLCGIAVIGVQF LIAAGLLPEVG" misc_feature 1985963..1987171 /gene="tyrP" /locus_tag="SF1953" /note="tyrosine transporter TyrP; Provisional; Region: PRK15132" /db_xref="CDD:185086" gene complement(1987236..1987901) /gene="yecA" /locus_tag="SF1954" /db_xref="GeneID:1025148" CDS complement(1987236..1987901) /gene="yecA" /locus_tag="SF1954" /note="Code: R; COG: COG3318" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707798.1" /db_xref="GeneID:1025148" /translation="MKTGPLNESELEWLDDILTKYNTDHAILDVAELDGLLTAVLSSP QEIEPEQWLVAVWGGADYVPRWASEKEMTRFMNLAFQHMADTAERLNEFPEQFEPLFG LREVDGSELTIVEEWCFGYMRGVALSDWSTLPDSLKPALEAIALHGTEENFERVEKMS PEAFEESVDAIRLAALDLHAYWMAHPQEKAVQQPIKAEEKPGRNDPCPCGSGKKFKQC CLH" misc_feature complement(1987239..1987901) /gene="yecA" /locus_tag="SF1954" /note="hypothetical protein; Provisional; Region: PRK10396" /db_xref="CDD:236680" gene complement(1988097..1988183) /locus_tag="SF4474" /db_xref="GeneID:3161825" tRNA complement(1988097..1988183) /locus_tag="SF4474" /product="tRNA-Leu" /codon_recognized="UUA" /db_xref="GeneID:3161825" gene complement(1988196..1988269) /locus_tag="SF4475" /db_xref="GeneID:3161823" tRNA complement(1988196..1988269) /locus_tag="SF4475" /product="tRNA-Cys" /codon_recognized="UGC" /db_xref="GeneID:3161823" gene complement(1988324..1988399) /locus_tag="SF4476" /db_xref="GeneID:3161822" tRNA complement(1988324..1988399) /locus_tag="SF4476" /product="tRNA-Gly" /codon_recognized="GGC" /db_xref="GeneID:3161822" gene complement(1988551..1989099) /gene="pgsA" /locus_tag="SF1955" /db_xref="GeneID:1025192" CDS complement(1988551..1989099) /gene="pgsA" /locus_tag="SF1955" /note="Code: I; COG: COG0558" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphate synthetase" /protein_id="NP_707799.1" /db_xref="GeneID:1025192" /translation="MQFNIPTLLTLFRVILIPFFVLVFYLPVTWSPFAAALIFCVAAV TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYVGIALFFVA AVLTLWSMLQYLSAARADLLDQ" misc_feature complement(1988554..1989099) /gene="pgsA" /locus_tag="SF1955" /note="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Region: PRK10832" /db_xref="CDD:182763" gene complement(1989156..1990922) /gene="uvrC" /locus_tag="SF1956" /db_xref="GeneID:1025141" CDS complement(1989156..1990922) /gene="uvrC" /locus_tag="SF1956" /note="Code: L; COG: COG0322" /codon_start=1 /transl_table=11 /product="excinuclease ABC subunit C" /protein_id="NP_707800.4" /db_xref="GeneID:1025141" /translation="MYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQI DVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGDTHPRLAMHRGAKHA KGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGL VSEEEYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAACIRDQIQAVRRVT EKQFVSNTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVET FVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLK LARTNAATALTSKLSQQSTVHQRLTALASVLKLPEVKRMECFDISHTMGEQTVASCVV FDANGPLRAEYRRYNITGITPGDDYAAMNQVLRRRYGKAIDDSKIPDVILIDGGKGQL AQAKNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVI QHIRDESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVE EIAKVPGISQGLAEKIFWSLKH" misc_feature complement(1989159..1990922) /gene="uvrC" /locus_tag="SF1956" /note="excinuclease ABC subunit UvrC; Region: uvrC; PRK00558" /db_xref="CDD:234792" gene complement(1990985..1991641) /gene="uvrY" /locus_tag="SF1957" /db_xref="GeneID:1025182" CDS complement(1990985..1991641) /gene="uvrY" /locus_tag="SF1957" /note="Code: TK; COG: COG2197" /codon_start=1 /transl_table=11 /product="response regulator" /protein_id="NP_707801.1" /db_xref="GeneID:1025182" /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCR TNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIMLTVHTENPLPAKVMQAGAAGYL SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ " misc_feature complement(1990988..1991641) /gene="uvrY" /locus_tag="SF1957" /note="response regulator; Provisional; Region: PRK09483" /db_xref="CDD:236538" gene 1992100..1992324 /gene="yecF" /locus_tag="SF1958" /db_xref="GeneID:1025152" CDS 1992100..1992324 /gene="yecF" /locus_tag="SF1958" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707802.1" /db_xref="GeneID:1025152" /translation="MSTPDFSTAENNQELANEVSCLKAMLTLMLQAMGQADAGRVMLK MEKQLALIEDETQAAVFSKTVKQIKQAYRQ" misc_feature 1992100..1992321 /gene="yecF" /locus_tag="SF1958" /note="DUF2594 family protein; Region: PRK10613" /db_xref="CDD:182588" gene complement(1992351..1992977) /gene="sdiA" /locus_tag="SF1959" /db_xref="GeneID:1025188" CDS complement(1992351..1992977) /gene="sdiA" /locus_tag="SF1959" /note="Code: K; COG: COG2771" /codon_start=1 /transl_table=11 /product="ftsQAZ gene cluster transcriptional regulator" /protein_id="NP_707803.2" /db_xref="GeneID:1025188" /translation="MQDTDFFSWRRTMLLRFQRMEAAEEAYHEIELQAQQLEYDYYSL CVRHPVPFTRPKVAFYTNYPESWVSYYQAKNFLAIDPVLNPENFSQGHLMWNDDLFSE AQPLWEAAHAHGLRRGVTQYLMLPNRALGFLSFSRCSTREIPILSDELQLKMQLLVRE SLMALMRLNDEIVMTPEMNFSKREKEILKWTAEGKTSAEIAMILSITG" misc_feature complement(1992357..1992977) /gene="sdiA" /locus_tag="SF1959" /note="transcriptional regulator SdiA; Region: PRK10188" /db_xref="CDD:182292" gene complement(1993207..1993959) /gene="yecC" /locus_tag="SF1960" /db_xref="GeneID:1025183" CDS complement(1993207..1993959) /gene="yecC" /locus_tag="SF1960" /note="Code: E; COG: COG1126" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter ATP-binding protein YecC" /protein_id="NP_707804.1" /db_xref="GeneID:1025183" /translation="MSAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT LLRSINLLEQPEAGTITVGDITIDTARSLSQQKSLIRQLRQHVGFVFQNFNLFPHRTV LENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALA MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD QGRIVEQGAAKALFADPQQPRTRQFLEKLLLQ" misc_feature complement(1993210..1993959) /gene="yecC" /locus_tag="SF1960" /note="putative amino-acid ABC transporter ATP-binding protein YecC; Provisional; Region: PRK11264" /db_xref="CDD:183063" gene complement(1993956..1994624) /gene="yecS" /locus_tag="SF1961" /db_xref="GeneID:1025176" CDS complement(1993956..1994624) /gene="yecS" /locus_tag="SF1961" /note="Code: E; COG: COG0765" /codon_start=1 /transl_table=11 /product="amino acid ABC transporter permease" /protein_id="NP_707805.1" /db_xref="GeneID:1025176" /translation="MQESIQLVIDSLPFLLKGAGYTLQLSIGGMFFGLLLGFILALMR LSPIWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPSAMIGLSLNTAAY AAETLRAAISSIDKGQWEAAASIGMTPWQTMRRAILPQAARVALPPLSNSFISLVKDT SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWIMATVLSTLQNHFENQLNRQE REPK" misc_feature complement(1993965..1994624) /gene="yecS" /locus_tag="SF1961" /note="cystine ABC transporter permease; Region: PRK15100" /db_xref="CDD:185055" misc_feature complement(order(1994013..1994015,1994022..1994027, 1994034..1994039,1994043..1994048,1994055..1994060, 1994088..1994093,1994130..1994135,1994142..1994153, 1994172..1994174,1994181..1994186,1994226..1994228, 1994277..1994279,1994286..1994291,1994301..1994303, 1994307..1994312,1994319..1994321,1994325..1994327, 1994331..1994336,1994400..1994402,1994406..1994411, 1994418..1994447,1994451..1994462,1994490..1994492, 1994505..1994510,1994517..1994522)) /gene="yecS" /locus_tag="SF1961" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1994136..1994153,1994400..1994444)) /gene="yecS" /locus_tag="SF1961" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(1994058..1994060,1994088..1994090, 1994097..1994099,1994133..1994135,1994349..1994351, 1994400..1994402)) /gene="yecS" /locus_tag="SF1961" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(1994205..1994207,1994217..1994222, 1994238..1994276)) /gene="yecS" /locus_tag="SF1961" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(1994639..1995721) /gene="yedO" /locus_tag="SF1962" /db_xref="GeneID:1025173" CDS complement(1994639..1995721) /gene="yedO" /locus_tag="SF1962" /note="Code: E; COG: COG2515" /codon_start=1 /transl_table=11 /product="1-aminocyclopropane-1-carboxylate deaminase" /protein_id="NP_707806.3" /db_xref="GeneID:1025173" /translation="MTKKGAFTSAFFIYAFSACIIRKSQQHTSEAVMPLHNLTRFPRL EFIGAPTPLEYLPRFSDYLGREIFIKRDEVTPMAMGGNKLRKLEFLAADALREGADTL ITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM CDALTDPNAQLEELATRVEAQGFRPYVIPVGGSNALGALGYVESALEIAQQCEGAVNI SSVVVASGSAGTHAGLAVGLEHLMPESELIGVTVSRSVADQLPKVVNLQQAIAKELEL TASAEILLWDDYFAPGYGVPNDEGMEAVKLLARLEGILLDPVYTGKAMAGLIDGISQK RFKDEGPILFIHTGGAPALFAYHPHV" misc_feature complement(1994642..1995616) /gene="yedO" /locus_tag="SF1962" /note="D-cysteine desulfhydrase; Validated; Region: PRK03910" /db_xref="CDD:179673" misc_feature complement(order(1994675..1994683,1995032..1995046, 1995389..1995391,1995464..1995466,1995473..1995478)) /gene="yedO" /locus_tag="SF1962" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107210" misc_feature complement(1995473..1995475) /gene="yedO" /locus_tag="SF1962" /note="catalytic residue [active]" /db_xref="CDD:107210" gene complement(1995730..1996587) /locus_tag="SF1963" /db_xref="GeneID:1025171" CDS complement(1995730..1996587) /locus_tag="SF1963" /note="Code: E; COG: COG0834" /codon_start=1 /transl_table=11 /product="cystine transporter subunit" /protein_id="NP_707807.1" /db_xref="GeneID:1025171" /translation="MFTNNGSTLQTDITTFGVNMKLAHLGRQALMGVMAVALVAGMSV KSFADEGLLNKVKESGTLLVGLEGTYPPFSFQGDDGKLTGFEVEFAQQLAKHLGVEAS LKPTKWDGMLASLDSKRIDVVINQVTISDERKKKYDFSTPYTISGIQALVKKGNEGTI KTAADLKGKKVGVGLGTNYEEWLRQNVQGVDVRTYDDDPTKYQDLRVGRIDAILVDRL AALDLVKKTNDTLAVTGEAFSRQESGVALRKGNEDLLKAVNDAIAEMQKDGTLQALSE KWFGADVTK" misc_feature complement(1995733..1996530) /locus_tag="SF1963" /note="cystine ABC transporter substrate-binding protein; Region: PRK11260" /db_xref="CDD:183061" gene complement(1996618..1997205) /gene="fliZ" /locus_tag="SF1964" /db_xref="GeneID:1025174" CDS complement(1996618..1997205) /gene="fliZ" /locus_tag="SF1964" /codon_start=1 /transl_table=11 /product="flagella biosynthesis protein FliZ" /protein_id="NP_707808.1" /db_xref="GeneID:1025174" /translation="MPHFNFDYQEFLMMVQHLKRRPLSRYLKDFKHSQTHCAHCRKLL DRITLVRDGKIVNKIEISRLDTLLDEKGWQTEQQSWAALCRFCGDLHCKTQSDFFDII GFKKFLFEQTEMSPGTVREYVVRLRRLGNHLHEQNISLDQLQDGFLDEILAPWLPTTS TNNYRIALRKYQHYQRQTCTGLVQKSSSLPASDIY" misc_feature complement(1996666..1997169) /gene="fliZ" /locus_tag="SF1964" /note="flagella biosynthesis regulatory protein FliZ; Region: PRK11582" /db_xref="CDD:183213" gene complement(1997215..1997934) /gene="fliA" /locus_tag="SF1965" /pseudo /db_xref="GeneID:1025175" misc_feature complement(1997215..1997934) /gene="fliA" /locus_tag="SF1965" /note="Similar to Escherichia coli K12 flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons gi: 1788231 (240 aa). BLAST with identity of 98% in 239 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(1998099..1999751) /gene="fliC" /locus_tag="SF1966" /db_xref="GeneID:1025169" CDS complement(1998099..1999751) /gene="fliC" /locus_tag="SF1966" /note="Code: N; COG: COG1344" /codon_start=1 /transl_table=11 /product="flagellin" /protein_id="NP_707809.1" /db_xref="GeneID:1025169" /translation="MAQVINTNSLSLITQNNINKNQSALSSSIERLSSGLRINSAKDD AAGQAIANRFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRIRELTVQASTG TNSDSDLDSIQDEIKSRLDEIDRVSGQTQFNGVNVLAKDGSMKIQVGANDGQTITIDL KKIDSDTLGLNGFNVNGGGAVANTAASKADLVAANATVVGNKYTVSAGYDAAKASDLL AGVSDGDTVQATINNGFGTAASATNYKYDSASKSYSFDTTTASAADVQKYLTPGVGDT AKGTITIDGSAQDVQISSDGKITASNGDKLYIDTTGRLTKNGSGASLTEASLSTLAAN NTKATTIDIGGTSISFTGNSTTPDTITYSVTGAKVDQAAFDKAVSTSGNNVDFTTAGY SVNGTTGAVTKGVDSVYVDNNEALTTSDTVDFYLQDDGSVTNGSGKAVYKDADGKLTT DAETKAATTADPLKALDEAISSIDKFRSSLGAVQNRLDSAVTNLNNTTTNLSEAQSRI QDADYATEVSNMSKAQIIQQAGNSVLAKANQVPQQVLSLLQG" misc_feature complement(1998102..1999751) /gene="fliC" /locus_tag="SF1966" /note="FliC/FljB family flagellin; Region: PRK08026" /db_xref="CDD:236140" gene 2000017..2001423 /gene="fliD" /locus_tag="SF1967" /db_xref="GeneID:1025193" CDS 2000017..2001423 /gene="fliD" /locus_tag="SF1967" /note="Code: N; COG: COG1345" /codon_start=1 /transl_table=11 /product="flagellar capping protein" /protein_id="NP_707810.1" /db_xref="GeneID:1025193" /translation="MASISSLGVGSGLDLSSILDSLTAAQKATLTPISNQQSSFTAKL SAYGTLKSALTTFQTANTALSKADLFSATSTTSSTTAFSATTAGNAIAGKYTISVTHL AQAQTLTTRTTRDDTKTAIATSDSKLTIQQGDDKDPITIDISAANSSLSGIRDAINNA KAGVSASIINVGNGEYRLSVTSNDTGLDNAMTLSVSGDDALQSFMGYDASASSNGMEV SVAAQNAQLTVNNVAIENSSNTISDALENITLNLNDVTTGNQTLTITQDTSKVQTAIK DWVNAYNSLIDTFSSLTKYTAVDAGADSQSSSNGALLGDSTLRTIQTQLKSMLSNTVS SSSYKTLAQIGITTDPSDGKLELDADKLTAALKKDASGVGALIVGDGKKTGITTTIGS NLTSWLSTTGIIKAATDGVSKTLNKLTKDYNAASDRIDAQVARYKEQFTQLDVLMTSL NSTSSYLTQQFENNSNSK" misc_feature 2000017..2001402 /gene="fliD" /locus_tag="SF1967" /note="flagellar capping protein; Reviewed; Region: fliD; PRK08032" /db_xref="CDD:236141" gene 2001448..2001858 /gene="fliS" /locus_tag="SF1968" /db_xref="GeneID:1025185" CDS 2001448..2001858 /gene="fliS" /locus_tag="SF1968" /note="Code: N; COG: COG1516" /codon_start=1 /transl_table=11 /product="flagellar protein FliS" /protein_id="NP_707811.1" /db_xref="GeneID:1025185" /translation="MYAAKGTQAYAQIGVESTVMSASQQQLVTMLFDGVLSALVRARL FMQDNNQQGKGVSLSKAINIIENGLRVSLDEESKDELTQNLIALYSYMVRRLLQANLR NDVSAVEEVEALMRNIADAWKESLLSPSSIQDPV" misc_feature 2001448..2001834 /gene="fliS" /locus_tag="SF1968" /note="flagellar export chaperone FliS; Region: FliS; cl00654" /db_xref="CDD:469861" misc_feature order(2001520..2001522,2001529..2001531,2001535..2001540, 2001547..2001549,2001625..2001627,2001634..2001639, 2001649..2001654,2001661..2001666,2001688..2001690, 2001697..2001699,2001706..2001714,2001718..2001720, 2001775..2001780,2001784..2001789,2001796..2001801, 2001808..2001813,2001817..2001819) /gene="fliS" /locus_tag="SF1968" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:294015" misc_feature 2001520..2001582 /gene="fliS" /locus_tag="SF1968" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:294015" misc_feature 2001598..2001666 /gene="fliS" /locus_tag="SF1968" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:294015" misc_feature 2001688..2001738 /gene="fliS" /locus_tag="SF1968" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:294015" misc_feature 2001763..2001819 /gene="fliS" /locus_tag="SF1968" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:294015" gene 2001858..2002223 /gene="fliT" /locus_tag="SF1969" /db_xref="GeneID:1025204" CDS 2001858..2002223 /gene="fliT" /locus_tag="SF1969" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FliT" /protein_id="NP_707812.1" /db_xref="GeneID:1025204" /translation="MNNAPHLYFAWQQLVEKSQLMLRLATEEQWDELIASEMAYVNAV QEIAHLTEEVAPSTTMQEQLRPMLHLILDNESKVKQLLQIRMDELAKLVGQSSVQKSV LSAYGDQGGFVLAPQDNLF" misc_feature 2001858..2002220 /gene="fliT" /locus_tag="SF1969" /note="flagella biosynthesis regulatory protein FliT; Region: PRK10548" /db_xref="CDD:182538" gene 2002301..2003788 /gene="amyA" /locus_tag="SF1970" /db_xref="GeneID:1025158" CDS 2002301..2003788 /gene="amyA" /locus_tag="SF1970" /note="Code: G; COG: COG0366" /codon_start=1 /transl_table=11 /product="cytoplasmic alpha-amylase" /protein_id="NP_707813.1" /db_xref="GeneID:1025158" /translation="MRNPTLLQCFHWYYPEGGKLWPELAERADGFNDIGINMVWLPPA YKGASGGYSVGYDSYDLFDLGEFDQKGSIPTKYGDKAQLLAAIDALKRNDIAVLLDVV VNHKMGADEKEAIRVQRVNADDRTQIDEEIIECEGWTRYTFPARAGQYSQFIWDFKCF SGIDHIEHPDEDGIFKIVNDYTGEGWNDQVDDELGNFDYLMGENIDFRNHAVTEEIKY WARWVMEQTQCDGFRLDAVKHIPAWFYKEWIEHVQEVAPKPLFIVAECWSHEVDKLQT YIDQVEGKTMLFDAPLQMKFHEASRMGRDYDMTQIFTGTLVEADPFHAVTLVANHDTQ PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGAHYEDVGGDGQTYPIDMPII EQLDELILARQRFAHGVQTLFFDHPNCIAFIRSGTDEYPGCVVVMSNGDDGEKTIHLG ENYGNKTWRDFLGNRQESVVTDENGEATFFCNGGSVSVWVIEEVI" misc_feature 2002301..2003770 /gene="amyA" /locus_tag="SF1970" /note="cytoplasmic alpha-amylase; Reviewed; Region: PRK09441" /db_xref="CDD:236518" misc_feature order(2002334..2002336,2002508..2002510,2002613..2002615, 2002898..2002906,2002997..2002999,2003003..2003008, 2003012..2003017,2003093..2003095,2003099..2003104, 2003180..2003182,2003291..2003296) /gene="amyA" /locus_tag="SF1970" /note="active site" /db_xref="CDD:200457" misc_feature order(2002610..2002612,2002892..2002894,2002910..2002912) /gene="amyA" /locus_tag="SF1970" /note="Na/Ca binding site [ion binding]; other site" /db_xref="CDD:200457" misc_feature order(2003003..2003005,2003093..2003095,2003294..2003296) /gene="amyA" /locus_tag="SF1970" /note="catalytic site [active]" /db_xref="CDD:200457" gene complement(2003822..2004235) /gene="yedD" /locus_tag="SF1971" /db_xref="GeneID:1027622" CDS complement(2003822..2004235) /gene="yedD" /locus_tag="SF1971" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_707814.2" /db_xref="GeneID:1027622" /translation="MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQ RALVSPEAIGSLIVTKEGDTLDCRQWQRGIAVPGKLTLMSDDLTNVTVKRELYEVERD GNTIEYDGMTMERVDRPTAECAAALDKAPLPTPLP" misc_feature complement(2003825..2004235) /gene="yedD" /locus_tag="SF1971" /note="lipoprotein; Provisional; Region: PRK10397" /db_xref="CDD:182428" gene 2004422..2005627 /gene="yedE" /locus_tag="SF1972" /db_xref="GeneID:1025147" CDS 2004422..2005627 /gene="yedE" /locus_tag="SF1972" /note="Code: R; COG: COG2391" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707815.2" /db_xref="GeneID:1025147" /translation="MSWQQFKHAWLIKFWAPIPAVIAAGILSTYYFGITGTFWAVTGE FTRWGGQLLQLFGVHAEEWGYFKIIHLEGSPLTRIDGMMILGMFGGCFAAALWANNVK LRMPRSRIRIMQAIIGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFAIATAIGSW FGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFRLGMLVFFGMLGWALLTAMNQ PKLGLAMLFGVGFGLLIERAQICFTSAFRDMWITGRTHMAKAIIIGMAVSAIGIFSYV QLGVEPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNVIGS TILAYYWDDFAPALATDWDKINLLKTFGPMGGLLVTYLLLFAALMLIIGWEKRFFRRE APQTAKEIA" misc_feature 2004434..2005615 /gene="yedE" /locus_tag="SF1972" /note="putative inner membrane protein; Provisional; Region: PRK11099" /db_xref="CDD:236845" gene 2005624..2005857 /gene="yedF" /locus_tag="SF1973" /db_xref="GeneID:1025168" CDS 2005624..2005857 /gene="yedF" /locus_tag="SF1973" /note="Code: K; COG: COG0425" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707816.1" /db_xref="GeneID:1025168" /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP QSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK" misc_feature 2005624..2005854 /gene="yedF" /locus_tag="SF1973" /note="putative sulfurtransferase YedF; Region: PRK11018" /db_xref="CDD:236822" misc_feature order(2005651..2005656,2005663..2005665,2005672..2005683, 2005687..2005689) /gene="yedF" /locus_tag="SF1973" /note="CPxP motif; other site" /db_xref="CDD:239514" gene 2005964..2006617 /gene="yedK" /locus_tag="SF1974" /pseudo /db_xref="GeneID:1023627" misc_feature 2005964..2006617 /gene="yedK" /locus_tag="SF1974" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788240 (218 aa). BLAST with identity of 94% in 218 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2006674..2007708) /locus_tag="SF1975" /pseudogene="unknown" /db_xref="GeneID:1027621" gene 2007950..2008565 /locus_tag="SF1976" /pseudogene="unknown" /db_xref="GeneID:1026533" gene 2008893..2009975 /gene="nmpC" /locus_tag="SF1977" /db_xref="GeneID:1025206" CDS 2008893..2009975 /gene="nmpC" /locus_tag="SF1977" /note="Code: M; COG: COG3203" /codon_start=1 /transl_table=11 /product="porin" /protein_id="NP_707819.1" /db_xref="GeneID:1025206" /translation="MKKLTVAISAVAASVLMAMSAQAAEIYNKDSNKLDLYGKVNAKH YFSSNDADDGDTTYVRLGFKGETQINDQLTGFGQWEYEFKGNRAESQGSSKDKTRLAF AGLKFGDYGSIDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNN DFFGLVDGLNFAAQYQGKNDRTDVTEANGDGFGFSTTYEYEGFGVGATYAKSDRTNDQ VIYGNNSLNASGQNAEVWAAGLKYDANNIYLATTYSETQNMTVFGNNHIANKAQNFEV VAQYQFDFGLRPSVAYLQSKGKDLGAWGDQDLIEYIDVGATYYFNKNMSTFVDYKINL IDKSDFTKASGVATDDIVAVGLVYQF" misc_feature 2008938..2009972 /gene="nmpC" /locus_tag="SF1977" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" misc_feature order(2008986..2008988,2008992..2008994,2009010..2009012, 2009016..2009024,2009085..2009099,2009115..2009117, 2009121..2009129,2009133..2009135,2009139..2009150, 2009184..2009189,2009193..2009207,2009235..2009243, 2009340..2009342,2009346..2009351,2009850..2009855, 2009862..2009864,2009958..2009960,2009964..2009966, 2009970..2009972) /gene="nmpC" /locus_tag="SF1977" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238208" misc_feature order(2009007..2009009,2009070..2009072,2009187..2009189, 2009280..2009282,2009340..2009342) /gene="nmpC" /locus_tag="SF1977" /note="eyelet of channel [active]" /db_xref="CDD:238208" gene complement(2010525..2011262) /locus_tag="SF1978" /db_xref="GeneID:1025216" CDS complement(2010525..2011262) /locus_tag="SF1978" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="regulator" /protein_id="NP_707820.1" /db_xref="GeneID:1025216" /translation="MLARDKSNLKIEEIRMHKHHEIHRVKPLMPALCRIRQGKKVINW ETHSLTVDNNQIILFPCGYEFYIVNYPEAGLYLAEMLYYPIDLIEKFQKFYAITDQIR NTTGFCLPQNPELIYCWEQLKTSISRGFSTQIQEHLAMGVLLSLGAHHVNCLLLSDSK QSLISRCYNLMLSEPRTKWTANKVARYLYISVSTLHRRLASEGISFQSILDDVRLNNA LSCYTNDSKTHQRDCQGKWLQVSFSFY" misc_feature complement(2010609..>2010803) /locus_tag="SF1978" /note="transcriptional regulator HilD; Provisional; Region: PRK15185" /db_xref="CDD:185107" gene complement(2011272..2011823) /gene="ybcL" /locus_tag="SF1979" /db_xref="GeneID:1025203" CDS complement(2011272..2011823) /gene="ybcL" /locus_tag="SF1979" /note="Code: R; COG: COG1881" /codon_start=1 /transl_table=11 /product="kinase inhibitor" /protein_id="NP_707821.1" /db_xref="GeneID:1025203" /translation="MKKLIVSSVLAFITFSAQAAAFQVTSNEIKTGEQLTTSHVFSGF GCEGGNTSPSLTWSGAPEGTKSFAVTVYDPDAPTGSGWWHWTVANIPATVTYLPTDAG RRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVDSNSSGA LVGYMLNANKIATAEITPVYEIK" misc_feature complement(2011275..2011823) /gene="ybcL" /locus_tag="SF1979" /note="kinase inhibitor; Region: PRK09818" /db_xref="CDD:182092" misc_feature complement(order(2011407..2011409,2011413..2011415, 2011419..2011421,2011431..2011445,2011572..2011574, 2011578..2011580,2011602..2011607)) /gene="ybcL" /locus_tag="SF1979" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176643" gene complement(2011992..2012324) /gene="emrE" /locus_tag="SF1980" /db_xref="GeneID:1025057" CDS complement(2011992..2012324) /gene="emrE" /locus_tag="SF1980" /note="Code: P; COG: COG2076" /codon_start=1 /transl_table=11 /product="multidrug efflux protein" /protein_id="NP_707822.1" /db_xref="GeneID:1025057" /translation="MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASF WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVIN LLSRSAPH" misc_feature complement(2011995..2012324) /gene="emrE" /locus_tag="SF1980" /note="EmrE family multidrug efflux SMR transporter; Region: emrE; PRK09541" /db_xref="CDD:137367" misc_feature 2012521..2012749 /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788246 (93 aa). BLAST with identity of 94% in 76 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." gene complement(2012669..2012983) /gene="fliE" /locus_tag="SF1982" /db_xref="GeneID:1025154" CDS complement(2012669..2012983) /gene="fliE" /locus_tag="SF1982" /note="Code: N; COG: COG1677" /codon_start=1 /transl_table=11 /product="flagellar hook-basal body protein FliE" /protein_id="NP_707823.2" /db_xref="GeneID:1025154" /translation="MSAIQGIEGVISQLQATAMSARAQESLPQPTISFAGQLHAALDR ISDTQTVARTQAEKFTLGEPGVALNDVMTDMQKASVSMQMGIQVRNKLVAAYQEVMSM QV" misc_feature complement(2012675..2012980) /gene="fliE" /locus_tag="SF1982" /note="flagellar hook-basal body complex protein FliE; Region: fliE; TIGR00205" /db_xref="CDD:272960" gene 2013197..2014856 /gene="fliF" /locus_tag="SF1983" /pseudo /db_xref="GeneID:1025211" misc_feature 2013197..2014856 /gene="fliF" /locus_tag="SF1983" /note="Similar to Escherichia coli K12 flagellar biosynthesis; basal-body MS(membrane and supramembrane)-ring and collar protein gi: 1788248 (553 aa). BLAST with identity of 96% in 553 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2014849..2015844 /gene="fliG" /locus_tag="SF1984" /db_xref="GeneID:1025212" CDS 2014849..2015844 /gene="fliG" /locus_tag="SF1984" /note="Code: N; COG: COG1536" /codon_start=1 /transl_table=11 /product="flagellar motor switch protein G" /protein_id="NP_707824.2" /db_xref="GeneID:1025212" /translation="MSNLTGTDKSVILLMTIGEDRAAEVFKHLSQREVQTLSAAMANV TQISNKQLTDVLAEFEQEAEQFAALNINANDYLRSVLVKALGEERAASLLEDILETRD TASGIETLNFMEPQSAADLIRDEHPQIIATILVHLRRAQAADILALFDERLRHDVMLR IATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAV REFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEQPLREKFLR NMSQRAADILRDDLAKRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV" misc_feature 2014849..2015841 /gene="fliG" /locus_tag="SF1984" /note="flagellar motor switch protein FliG; Region: fliG; TIGR00207" /db_xref="CDD:272961" gene 2015837..2016523 /gene="fliH" /locus_tag="SF1985" /db_xref="GeneID:1025208" CDS 2015837..2016523 /gene="fliH" /locus_tag="SF1985" /note="Code: N; COG: COG1317" /codon_start=1 /transl_table=11 /product="flagellar assembly protein H" /protein_id="NP_707825.2" /db_xref="GeneID:1025208" /translation="MSDNLPWKTWTPDDLAPPPAEFVPMVESEETIIEEAEPSLEQQL AQLQMQAHEQGYQAGIAEGRQQGHEQGYQEGLAQGLEQGLAEAKAQQAPIHARMQQLV SEFQTTLDALDSVIASRLMQMALEAARQVIGQTPTVDNSALIKQIQQLLQQEPLFSGK PQLRVHPDDLQRVDDMLGATLSLHGWRLRGDPTLHPGGCKVSADEGDLDASVATRWQE LCRLAAPGVV" misc_feature 2015837..2016517 /gene="fliH" /locus_tag="SF1985" /note="flagellar assembly protein FliH; Region: fliH; PRK05687" /db_xref="CDD:235562" gene 2016523..2017896 /gene="fliI" /locus_tag="SF1986" /db_xref="GeneID:1025217" CDS 2016523..2017896 /gene="fliI" /locus_tag="SF1986" /note="Code: N; COG: COG1157" /codon_start=1 /transl_table=11 /product="flagellum-specific ATP synthase" /protein_id="NP_707826.1" /db_xref="GeneID:1025217" /translation="MTTRLTRWLTTLDNFEAKMAQLPAVRRYGRLTRATGLVLEATGL QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGVLPGARVYAKNISAE GLQSGKQLPLGPALLGRVLDGSGKPLDGLPFPDTTETGALITPPFNPLQRTPIEHVLD TGVRPINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKD FIENILGAEGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTR YAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGISGGGSITAFYTVLTEGDD QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALISEQHYARVRTFK QLLSSFQRNRDLVSVGAYAKGSDPMLDKAIALWPQLEGYLQQGIFERADWEASLQGLE RIFPTVS" misc_feature 2016523..2017887 /gene="fliI" /locus_tag="SF1986" /note="flagellum-specific ATP synthase FliI; Region: fliI; PRK07960" /db_xref="CDD:181182" gene 2017915..2018259 /gene="fliJ" /locus_tag="SF1987" /db_xref="GeneID:1025160" CDS 2017915..2018259 /gene="fliJ" /locus_tag="SF1987" /note="Code: N; COG: COG2882" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis chaperone FliJ" /protein_id="NP_707827.1" /db_xref="GeneID:1025160" /translation="MAEEQLKMLIDYQNEYRNNLNSDMSAGMTSNRWINYQQFIQTLE KAITQHRQQLNQWTQKVDIALNSWREKKQRLQAWQTLQERQSTAALLAENRLDQKKMD EFAQRAAMRKPE" misc_feature <2017918..2018256 /gene="fliJ" /locus_tag="SF1987" /note="Flagellar FliJ protein; Region: FliJ; cl23733" /db_xref="CDD:451514" gene 2018256..2019383 /gene="fliK" /locus_tag="SF1988" /db_xref="GeneID:1025170" CDS 2018256..2019383 /gene="fliK" /locus_tag="SF1988" /note="Code: N; COG: COG3144" /codon_start=1 /transl_table=11 /product="flagellar hook-length control protein" /protein_id="NP_707828.1" /db_xref="GeneID:1025170" /translation="MIRLAPLITADVDTTTLPGGKASDAAQDFLTLLSEALAGETTTD KAAPQLLVATDKPTTKGEPLVSDILADAQQADLLIPVDETLPVINDEQSTSTPLTTAQ TMTLAAVADKNTTKDEKADDLNEDVTASLSALFAMLPGFDNTPKVTDAPSTVLPAEKP TLFTKLTSAQLTTAQPDDAPGTPAQPLTPLVAEAQSKAEVISTPSPVTADASPLITPH QTQPLPTVAAPVLSAPLGSHEWQQSLSQHISLFTRQGQQSAELRLHPQDLGEVQISLK VDDNQAQIQMISPHQHVRAALEAALPVLRTQLAESGIQLGQSNISGESFSGQQQAASQ QQQSQRTANHEPLAGEDDDTLPVPVSLQGRVTGNSGVDIFA" misc_feature 2018256..2019380 /gene="fliK" /locus_tag="SF1988" /note="flagellar hook length control protein FliK; Region: PRK10118" /db_xref="CDD:236652" gene 2019488..2019952 /gene="fliL" /locus_tag="SF1989" /db_xref="GeneID:1025197" CDS 2019488..2019952 /gene="fliL" /locus_tag="SF1989" /note="Code: N; COG: COG1580" /codon_start=1 /transl_table=11 /product="flagellar basal body protein FliL" /protein_id="NP_707829.1" /db_xref="GeneID:1025197" /translation="MTDYAISKKSKRSLWIPILVFITLAACASAGYSYWHSHQVAADD KAQQRVVPSPVFYALDTFTVNLGDADRVLYIGITLRLKDEATRSRLSEYLPEVRSRLL LLFSRQDAAVLATEEGKKNLIAEIKTTLSTPLVAGQPKQDVTDVLYTAFILR" misc_feature 2019488..2019949 /gene="fliL" /locus_tag="SF1989" /note="flagellar basal body-associated protein FliL; Reviewed; Region: fliL; PRK07021" /db_xref="CDD:235909" gene 2019957..2020961 /gene="fliM" /locus_tag="SF1990" /db_xref="GeneID:1025187" CDS 2019957..2020961 /gene="fliM" /locus_tag="SF1990" /note="Code: N; COG: COG1868" /codon_start=1 /transl_table=11 /product="flagellar motor switch protein FliM" /protein_id="NP_707830.2" /db_xref="GeneID:1025187" /translation="MGDSILSQAEIDALLNGDSEVKDEPTASISGESDIRPYDPNTQR RVVRERLQALEIINERFARHFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL ALEGYSDAWKAINPLEVEYVRSEMQVEFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC LPFSMIEPLRELLVNPPLENSRNEDQNWRDNLVRQVQHSQLELVANFADISLRLSQIL KLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTLNGQYALRIEHLINPILNSLNEEQPK " misc_feature 2019957..2020958 /gene="fliM" /locus_tag="SF1990" /note="flagellar motor switch protein FliM; Validated; Region: fliM; PRK06666" /db_xref="CDD:235849" gene 2020958..2021371 /gene="fliN" /locus_tag="SF1991" /db_xref="GeneID:1027610" CDS 2020958..2021371 /gene="fliN" /locus_tag="SF1991" /note="Code: N; COG: COG1886" /codon_start=1 /transl_table=11 /product="flagellar motor switch protein FliN" /protein_id="NP_707831.1" /db_xref="GeneID:1027610" /translation="MSDMNNPADDNNGAMDDLWAEALSEQKSTSEKSAADAVFQQFGG GDVSGTLQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR" misc_feature 2020958..2021368 /gene="fliN" /locus_tag="SF1991" /note="flagellar motor switch protein FliN; Validated; Region: fliN; PRK07963" /db_xref="CDD:181183" gene 2021434..2021739 /gene="fliO" /locus_tag="SF1992" /db_xref="GeneID:1025215" CDS 2021434..2021739 /gene="fliO" /locus_tag="SF1992" /codon_start=1 /transl_table=11 /product="flagellar protein FliO" /protein_id="NP_707832.3" /db_xref="GeneID:1025215" /translation="MSGALIAIIALILAAAWLVKRLGFAPKRTGVNGLKISASASLGA RERVVVVDVEDARLVLGVTAGQINLLHKLPPSAPTEEIPQTDFQSVMKNLLKRGGRS" misc_feature <2021482..2021736 /gene="fliO" /locus_tag="SF1992" /note="Flagellar biosynthesis protein, FliO; Region: FliO; cl01247" /db_xref="CDD:445331" gene 2021862..2022476 /gene="fliP" /locus_tag="SF1993" /db_xref="GeneID:1025190" CDS 2021862..2022476 /gene="fliP" /locus_tag="SF1993" /note="Code: N; COG: COG1338" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FliP" /protein_id="NP_707833.3" /db_xref="GeneID:1025190" /translation="MQTLVFITSLTFIPAILLMMTSFTRIIIVFGLLRNALGTPSAPP NQVLLGLALFLTFFIMSPVIDKIYVDAYQPFSEEKISMQEALEKGAQPLREFMLRQTR EADLGLFARLANTGPLQGPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIA SVLMALGMMMVPPATIALPFKLMLFVLVDGWQLLVGSLAQSFYS" misc_feature 2021862..2022470 /gene="fliP" /locus_tag="SF1993" /note="Flagellar biosynthesis protein FliP [Cell motility]; Region: FliP; COG1338" /db_xref="CDD:440949" gene 2022486..2022755 /gene="fliQ" /locus_tag="SF1994" /db_xref="GeneID:1025209" CDS 2022486..2022755 /gene="fliQ" /locus_tag="SF1994" /note="Code: N; COG: COG1987" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FliQ" /protein_id="NP_707834.1" /db_xref="GeneID:1025209" /translation="MTPESVMMMGTEAMKVALALAAPLLLVALVTGLIISILQAATQI NEMTLSFIPKIIAVFIAIIIAGPWMLNLLLDYVRTLFTNLPYIIG" misc_feature 2022486..2022752 /gene="fliQ" /locus_tag="SF1994" /note="flagellar type III secretion system protein FliQ; Region: fliQ; PRK05700" /db_xref="CDD:235567" gene 2022764..2023549 /gene="fliR" /locus_tag="SF1995" /db_xref="GeneID:1025189" CDS 2022764..2023549 /gene="fliR" /locus_tag="SF1995" /note="Code: N; COG: COG1684" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein FliR" /protein_id="NP_707835.2" /db_xref="GeneID:1025189" /translation="MMQETSDQWLSWLSLYFWPLLRVLALISTAPILSERSVPKRVKL GLAMMITFAIAPSLPANDVPVFSFFALWLAVQQILIGIALGFTMQFAFAAVRTAGEII GLQMGLSFATFVDPGSHLNMPVLARIMDMLALLLFLTFNGHLWLISLLVDTFHTLPIG SEPLNSNAFLAPTKAGSLIFLNGLMLALPLITLLLTLNLALGLLNRMAPQLSIFVIGF PLTLTVGISLMAALMPLIAPFCEHLFSEIFNLLADIISELPLI" misc_feature 2022788..2023513 /gene="fliR" /locus_tag="SF1995" /note="flagellar type III secretion system protein FliR; Region: fliR; PRK05701" /db_xref="CDD:235568" gene 2023834..2024457 /gene="rcsA" /locus_tag="SF1996" /db_xref="GeneID:1026912" CDS 2023834..2024457 /gene="rcsA" /locus_tag="SF1996" /note="Code: K; COG: COG2771" /codon_start=1 /transl_table=11 /product="colanic acid capsular biosynthesis activation protein A" /protein_id="NP_707836.1" /db_xref="GeneID:1026912" /translation="MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACD SQRPSVVFINEDCFIHDASNSQRIKHIINQHPNTLFIVFMAIANVHFDEYLLVRKNLL ISSKSIKPESLDDILGDILKKETTITSFLNMPTLSLSRTESSMLRMWMAGQGTIQISD QMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTNGIFVNMR" misc_feature 2023834..2024454 /gene="rcsA" /locus_tag="SF1996" /note="transcriptional regulator RcsA; Region: rcsA; PRK15411" /db_xref="CDD:185309" gene complement(2024501..2024689) /gene="dsrB" /locus_tag="SF1997" /db_xref="GeneID:1025210" CDS complement(2024501..2024689) /gene="dsrB" /locus_tag="SF1997" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707837.2" /db_xref="GeneID:1025210" /translation="MKVNDRVTVKTDGGPRRPGVVLAVEEFSEGTMYLVALEDYPLGI WFFNEAGHQDGIFVEKAE" misc_feature complement(2024504..2024689) /gene="dsrB" /locus_tag="SF1997" /note="protein DsrB; Region: PRK10708" /db_xref="CDD:182664" gene 2024852..2025079 /locus_tag="SF1998" /db_xref="GeneID:1025186" CDS 2024852..2025079 /locus_tag="SF1998" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707838.2" /db_xref="GeneID:1025186" /translation="MKTAKVYSDTAKREVSVDVDALLAAINEISESEVHRSQNDSEHV SVDGREYHTWRELADAFELDIHDFSVSEVNR" misc_feature 2024903..2025076 /locus_tag="SF1998" /note="Protein of unknown function (DUF2525); Region: DUF2525; pfam10733" /db_xref="CDD:431461" gene complement(2025093..2025179) /gene="dsrA" /locus_tag="SF4555" /db_xref="GeneID:1025196" ncRNA complement(2025093..2025179) /ncRNA_class="antisense_RNA" /gene="dsrA" /locus_tag="SF4555" /product="anti-sense RNA silencer of rcsA gene" /db_xref="GeneID:1025196" gene 2025377..2026192 /locus_tag="SF1999" /pseudo /db_xref="GeneID:1023389" misc_feature 2025377..2026192 /locus_tag="SF1999" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788265 (272 aa). BLAST with identity of 96% in 272 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2026189..2027673) /gene="yedQ" /locus_tag="SF2000" /db_xref="GeneID:1025207" CDS complement(2026189..2027673) /gene="yedQ" /locus_tag="SF2000" /codon_start=1 /transl_table=11 /product="diguanylate cyclase YedQ" /protein_id="NP_707839.1" /db_xref="GeneID:1025207" /translation="MQYNVDKLIFLRNGMREALVAPLDFTSLRNAVTEFEQHRDEHAW QIELNRRRTLPVNGVSDALVSEGNFLSRENESLDNEITAALEVGYLLRLAHNSSSMVE QAMYVSRAGFYVSTQPTLFTRNVPTRYYGYVTQPWFIGHSQRENRHRAVRWFTSQPEH ASNTEPQVTVSVPVDSNNYWYGVLGMSIPVRTMQQFLRNAIDKNLDGEYQLYDSKLRF LTSSNPDHPTGNIFDPRELALLAQAMEHDTRGGIRMDSRYVSWERLDHFDGVLARVHT LSEGVRGDFGSISIALTLLWALFTTMLLLSWYVIRRMVSNMYVLQSSLQWQAWHDTLT RLYNRGALFEKARPLAKLCQTHQHPFSVIQVDLDHFKAINDRFGHQAGDRVLSHAAGL ISSSLRAQDVAGRVGGEEFCVILPGANLTQAAEVAERIRLKLNEKEMLIAKSTTIRIS ASLGVSSSEETGDYDFEQLQSLADRRLYLAKQAGRNRVFASDNA" misc_feature complement(2026192..2027673) /gene="yedQ" /locus_tag="SF2000" /note="cellulose biosynthesis regulator YedQ; Region: PRK15426" /db_xref="CDD:237964" gene complement(2028054..2028236) /locus_tag="SF2001" /db_xref="GeneID:1025201" CDS complement(2028054..2028236) /locus_tag="SF2001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707840.1" /db_xref="GeneID:1025201" /translation="MSFMVSEEVTVKEGGPRMIVTGYSSGMVECRWYDGYGVKREAFH ETDLVPGEGSRSAEEV" misc_feature complement(2028084..2028236) /locus_tag="SF2001" /note="Uncharacterized conserved protein YodC, DUF2158 family [Function unknown]; Region: YodC; COG5475" /db_xref="CDD:444226" gene complement(2028315..2029232) /gene="yedI" /locus_tag="SF2002" /db_xref="GeneID:1025255" CDS complement(2028315..2029232) /gene="yedI" /locus_tag="SF2002" /note="Code: S; COG: COG2354" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707841.1" /db_xref="GeneID:1025255" /translation="MLLAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLN AQQVSGVRANRELPVVWGVAKGSLINKVILVPLALIISAFIPWAITPLLMIGGAFLCF EGVEKVLHMLEARKHKEDPAQSQQRLEKLAAQDPLKFEKDKIKGAIRTDFILSAEIVA ITLGIVAEAPLLNQVLVLSGIALVVTVGVYGLVGVIVKIDDLGYWLAEKSSALMQALG KGLLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHIAGQQSAVVAMILPT VLNLILGFIIGGIVVLGVKAVAKMRGQAH" misc_feature complement(2028318..2029226) /gene="yedI" /locus_tag="SF2002" /note="hypothetical protein; Provisional; Region: PRK10062" /db_xref="CDD:182217" gene 2029405..2030325 /gene="yedA" /locus_tag="SF2003" /db_xref="GeneID:1025254" CDS 2029405..2030325 /gene="yedA" /locus_tag="SF2003" /note="Code: GER; COG: COG0697" /codon_start=1 /transl_table=11 /product="DMT superfamily transporter inner membrane protein" /protein_id="NP_707842.1" /db_xref="GeneID:1025254" /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVGSWPPLMMAGVRF QAAGILLLAFLLLRGHKLPPLRPLLNAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVV IATVPLFTLCFSRLFGIKTRKLEWVGIAIGLAGIIMLNSGGNLSGNPWGAILILIGSI SWAFGSVYGSRITLPVGMMAGAIEMLAAGVVLMIASMIAGEKLTALPSLSGFLAVGYL ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGETLSKIEWLALGVI VFAVVLVTLGKYLFPAKPVVAPVIQDASSE" misc_feature 2029405..2030280 /gene="yedA" /locus_tag="SF2003" /note="putative DMT superfamily transporter inner membrane protein; Provisional; Region: PRK11272" /db_xref="CDD:183067" gene complement(2030314..2030784) /gene="vsr" /locus_tag="SF2004" /db_xref="GeneID:1026736" CDS complement(2030314..2030784) /gene="vsr" /locus_tag="SF2004" /codon_start=1 /transl_table=11 /product="DNA mismatch endonuclease" /protein_id="NP_707843.1" /db_xref="GeneID:1026736" /translation="MVDVHDKATRSKNMRAIATRDTAIEKRLASLLTGQGLAFRVQDA SLPGRPDFVVDEYRCVIFTHGCFWHHHHCYLFKVPATRTEFWLEKIGKNVERDRRDIS RLQELGWRVLIVWECALRRREKLTDAALTERLEEWICGEGASAQIDTQGIHLLA" misc_feature complement(2030362..2030778) /gene="vsr" /locus_tag="SF2004" /note="G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein [Replication, recombination and repair]; Region: Vsr; COG3727" /db_xref="CDD:442941" gene complement(2030765..2032183) /gene="dcm" /locus_tag="SF2005" /db_xref="GeneID:1025261" CDS complement(2030765..2032183) /gene="dcm" /locus_tag="SF2005" /note="Code: L; COG: COG0270" /codon_start=1 /transl_table=11 /product="DNA cytosine methylase" /protein_id="NP_707844.1" /db_xref="GeneID:1025261" /translation="MQENISVTDSYSTGNAAQAMLEKLLQIYDVKMLVAQLNGVGENH WSAAILKRALANDSAWHRLSEKEFAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRG FESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEH IRQHIPEHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQGTLFFDVVRIIDARRP AMFVLENVKNLKSHDKGKTFRIIMQTLDELGYDVADAEDNGPDDPKIIDGKHFLPQHR ERIVLVGFRRDLNLKADFTLRDISECFPAQRVTLAQLLDPMVEAKYILTPVLWKYLYR YAKKHQARGNGFGYGMVYPNNPQSVTRTLSARYYKDGAEILIDRGWDMATGEKDFDDP LNQQHRPRRLTPRECARLMGFEAPGEAKFRIPVSDTQAYRQFGNSVVVPVFAAVAKLL EPKIKQAVALRQQEAQHGRRSR" misc_feature complement(2030789..2032183) /gene="dcm" /locus_tag="SF2005" /note="DNA cytosine methylase; Provisional; Region: PRK10458" /db_xref="CDD:236696" gene complement(2032250..2032790) /gene="yedJ" /locus_tag="SF2006" /pseudo /db_xref="GeneID:1025250" misc_feature complement(2032250..2032790) /gene="yedJ" /locus_tag="SF2006" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788273 (232 aa). BLAST with identity of 96% in 180 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct." /pseudo gene complement(2033088..2033900) /locus_tag="SF2007" /db_xref="GeneID:1025195" CDS complement(2033088..2033900) /locus_tag="SF2007" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707845.1" /db_xref="GeneID:1025195" /translation="MLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGY RKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNP DAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWW RNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRER IKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSEQMSPTEYENQYYQRLGSV" misc_feature complement(2033121..>2033897) /locus_tag="SF2007" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(2033957..2034241) /locus_tag="SF2008" /db_xref="GeneID:1026536" CDS complement(2033957..2034241) /locus_tag="SF2008" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707846.1" /db_xref="GeneID:1026536" /translation="MPMSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYAW IKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDILKKAAAYFAKLSD" misc_feature complement(2033975..2034241) /locus_tag="SF2008" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2034262..2035110 /locus_tag="SF2009" /db_xref="GeneID:1025236" CDS 2034262..2035110 /locus_tag="SF2009" /note="Code: M; COG: COG3203" /codon_start=1 /transl_table=11 /product="outer membrane pore protein" /protein_id="NP_707847.1" /db_xref="GeneID:1025236" /translation="MTLRCLLNPWRFSERILTDRENGEKGDNSQDTSYARVGVKGETQ INPEMTGYGQFELDLEASNRHNPDQTRLAYAGLSYKDFGSFDYSRNVGVAYDAEAFTD MFVEWGGDSWAGTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKAN GDGHGLSATYTIDGFSFAGAYANSDRTDWQSGDGKGERAEVWALSTKYDANNVYAAVM YGESHNMNSDDGDVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGQFLDLPLYF QTSVIT" misc_feature 2034352..2035062 /locus_tag="SF2009" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" misc_feature order(2034367..2034369,2034472..2034474,2034565..2034567, 2034625..2034627) /locus_tag="SF2009" /note="eyelet of channel [active]" /db_xref="CDD:238208" mobile_element complement(2035070..2036400) /mobile_element_type="insertion sequence:IS2" gene complement(2035081..2035986) /locus_tag="SF2010" /db_xref="GeneID:1025248" CDS complement(2035081..2035986) /locus_tag="SF2010" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_707848.1" /db_xref="GeneID:1025248" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRIMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AGTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(2035084..2035986) /locus_tag="SF2010" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(2035944..2036354) /locus_tag="SF2011" /db_xref="GeneID:1026913" CDS complement(2035944..2036354) /locus_tag="SF2011" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_707849.3" /db_xref="GeneID:1026913" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(2035947..2036309) /locus_tag="SF2011" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" mobile_element 2037155..2037922 /mobile_element_type="insertion sequence:IS1" gene 2037210..2037485 /gene="insA" /locus_tag="SF2012" /db_xref="GeneID:1025252" CDS 2037210..2037485 /gene="insA" /locus_tag="SF2012" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707850.1" /db_xref="GeneID:1025252" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 2037231..>2037482 /gene="insA" /locus_tag="SF2012" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 2037512..2037907 /gene="insB" /locus_tag="SF2013" /db_xref="GeneID:1025246" CDS 2037512..2037907 /gene="insB" /locus_tag="SF2013" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707851.1" /db_xref="GeneID:1025246" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 2037515..2037904 /gene="insB" /locus_tag="SF2013" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 2037953..2038804 /gene="yedU" /locus_tag="SF2014" /db_xref="GeneID:1025257" CDS 2037953..2038804 /gene="yedU" /locus_tag="SF2014" /note="Code: R; COG: COG0693" /codon_start=1 /transl_table=11 /product="chaperone protein HchA" /protein_id="NP_707852.1" /db_xref="GeneID:1025257" /translation="MTVQTSKNPQVDIAEDNAFFPSEYSLSQYTSPVSDLDGVDYPKP YRGKHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGLMT KFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGALIG LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALRHSDNPLNGYSICAFPDAADKQTP DIGYMPGHLTWYFGEELKKMGMNIINDDITGRVHKDRKRLTGDSPFAANALGKLAAQE MLAAYAS" misc_feature 2037953..2038801 /gene="yedU" /locus_tag="SF2014" /note="protein deglycase HchA; Region: PRK04155" /db_xref="CDD:235228" misc_feature 2038505..2038507 /gene="yedU" /locus_tag="SF2014" /note="conserved cys residue [active]" /db_xref="CDD:153222" gene complement(2038912..2040270) /gene="yedV" /locus_tag="SF2015" /db_xref="GeneID:1025222" CDS complement(2038912..2040270) /gene="yedV" /locus_tag="SF2015" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="2-component sensor protein" /protein_id="NP_707853.1" /db_xref="GeneID:1025222" /translation="MKRLSITVRLTLLFIFLQSVAGAGIVWTLYNGLASELKWRDDTT LINRTAQIKQLLIDGVNPDTLPVYFNRMMDVSQDILIIHSDGINKIVNRTNVSDDMLN NIPASETISAAGIYRSIINDTEIDALRINIDEVSPSLTVTVAKLASARHNMLEQYKIN SIIICIVAIILCSVLSPLLIRTGLREIKKLSGVTEALNYNDSRVPVEVNALPRELKPL GQALNKMHHALVKDFERLSQFADDLAHELRTPINALLGQNQVTLSQIRSIAEYQKTIA GNIEELENISRLTENILFLARADKNNVLVKLDSLSLNKEVENLLDYLEYLSDEKEICF KVKCNQQIFADKILLQRMLSNLIVNAIRYSPEKSRIHITSFLDANGSLNIDIASPGTK INEPEKLFRRFWRGDNSRHSVGQGLGLSLVKAIAELHGGSATYHYLSKHNVFRITLPQ RN" misc_feature complement(2038924..2040264) /gene="yedV" /locus_tag="SF2015" /note="heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386" /db_xref="CDD:273593" gene complement(2040270..2040941) /gene="yedW" /locus_tag="SF2016" /db_xref="GeneID:1027615" CDS complement(2040270..2040941) /gene="yedW" /locus_tag="SF2016" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="transcriptional regulatory protein YedW" /protein_id="NP_707854.2" /db_xref="GeneID:1027615" /translation="MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDD YALIILDIMLPGMDGWQILQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPF SFSELLARVRAQLRQHHALNSTLEISGLKMDSVSQSVSRDNISITLTRKEFQLLWLLA SRAGEIIPRTVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKLIATIRGMGYSF VAVKK" misc_feature complement(2040273..2040941) /gene="yedW" /locus_tag="SF2016" /note="DNA-binding response regulator HprR; Region: PRK11517" /db_xref="CDD:183172" gene 2041074..2041487 /locus_tag="SF2017" /db_xref="GeneID:1025247" CDS 2041074..2041487 /locus_tag="SF2017" /note="Code: R; COG: COG2351" /codon_start=1 /transl_table=11 /product="5-hydroxyisourate hydrolase" /protein_id="NP_707855.1" /db_xref="GeneID:1025247" /translation="MLKRYLVLSVATAAFSLPSLVYAAQQNILSVHILNQQTGKPAAD VTVTLEKKADNGWLQLNTAKTDKDGRIKALWPEQTATTGDYRVVFKTGDYFKKQNLES FFPEIPVEFHINKVNEHYHVPLLLSQYGYSTYRGS" misc_feature 2041074..2041484 /locus_tag="SF2017" /note="hydroxyisourate hydrolase; Provisional; Region: PRK15036" /db_xref="CDD:184996" misc_feature order(2041167..2041169,2041173..2041175,2041281..2041283, 2041434..2041436,2041440..2041442,2041446..2041448, 2041473..2041475) /locus_tag="SF2017" /note="active site" /db_xref="CDD:100114" misc_feature order(2041179..2041190,2041380..2041385,2041389..2041391, 2041401..2041409,2041452..2041454,2041458..2041478) /locus_tag="SF2017" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:100114" gene 2041596..2042600 /locus_tag="SF2018" /pseudo /db_xref="GeneID:1025256" misc_feature 2041596..2042600 /locus_tag="SF2018" /note="Similar to Escherichia coli K12 reductase gi: 1788282 (335 aa). BLAST with identity of 97% in 335 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2042601..2043236 /locus_tag="SF2019" /db_xref="GeneID:1025249" CDS 2042601..2043236 /locus_tag="SF2019" /note="Code: S; COG: COG2717" /codon_start=1 /transl_table=11 /product="sulfite oxidase subunit YedZ" /protein_id="NP_707856.1" /db_xref="GeneID:1025249" /translation="MRLTAKQVIWLKVCLHLAGLLPFLWLVWAINHGGLGADPVKDIQ HFTGRTALKFLLAALLITPLARYAKQPLLIRTRRLLGLWCFAWATLHLTSYALLELGV NNLALLGKELITRPYLTLGIISWVILLALAFTSTQSMQRKLGKHWQQLHNFVYLVAIL APIHYLWSVKIISPQPLIYAGLAVLLLALRYKKLLSLFNRLRKQAHNKLSL" misc_feature 2042601..2043218 /locus_tag="SF2019" /note="protein-methionine-sulfoxide reductase heme-binding subunit MsrQ; Region: PRK05419" /db_xref="CDD:235452" gene 2043494..2044144 /locus_tag="SF2020" /db_xref="GeneID:1025251" CDS 2043494..2044144 /locus_tag="SF2020" /note="Code: R; COG: COG3443" /codon_start=1 /transl_table=11 /product="zinc/cadmium-binding protein" /protein_id="NP_707857.1" /db_xref="GeneID:1025251" /translation="MAIRLHKLAVALGVFIVSAPAFSHGHHSHGKPLTEVEQKAANGV FDDTNVQNRTLSDWDGVWQSVYPLLQSGKLDPVFQKKADADKTKTFAEIKDYYRKGYP TDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFECKDPESKAPK YIQFSDHIIAPRKSSHFHIFMGNDSQQSLLNEMENWPTYYPYQLSSEEVVEEMMSH" misc_feature 2043494..2044141 /locus_tag="SF2020" /note="zinc/cadmium-binding protein; Provisional; Region: PRK10306" /db_xref="CDD:182368" gene complement(2045222..2045491) /locus_tag="SF2020a" /db_xref="GeneID:16608337" CDS complement(2045222..2045491) /locus_tag="SF2020a" /codon_start=1 /transl_table=11 /product="tail fiber assembly protein" /protein_id="YP_008439260.1" /db_xref="GeneID:16608337" /translation="MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQD AVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM" misc_feature complement(2045231..>2045398) /locus_tag="SF2020a" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; cl17077" /db_xref="CDD:450149" gene 2045548..2046216 /locus_tag="SF2021" /db_xref="GeneID:1025219" CDS 2045548..2046216 /locus_tag="SF2021" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707858.1" /db_xref="GeneID:1025219" /translation="MVKLMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEH LLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHK ISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATI LGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSA SGKK" misc_feature 2045719..2046012 /locus_tag="SF2021" /note="Methyltransferase domain; Region: Methyltransf_12; pfam08242" /db_xref="CDD:400515" misc_feature 2046253..2069131 /note="ipaH island IV" gene 2046532..2049513 /gene="ipaH_5" /locus_tag="SF2022" /pseudo /db_xref="GeneID:1027614" misc_feature 2046532..2049513 /gene="ipaH_5" /locus_tag="SF2022" /note="Similar to Shigella flexneri IpaH9.8 gb: AAC23714.1 (545 aa). BLAST with identity of 77% in 994 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element 2047145..2048473 /mobile_element_type="insertion sequence:iso-IS10R" gene 2047252..2048460 /locus_tag="SF2023" /db_xref="GeneID:1027506" CDS 2047252..2048460 /locus_tag="SF2023" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_707859.1" /db_xref="GeneID:1027506" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature 2047366..2048421 /locus_tag="SF2023" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene complement(2049693..2050307) /locus_tag="SF2024" /db_xref="GeneID:1027609" CDS complement(2049693..2050307) /locus_tag="SF2024" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707860.2" /db_xref="GeneID:1027609" /translation="MRFSTIVSVVTLVWGISPRQPSGKNIIRWLLKKRTNGSVRYCQY TSVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAWRTE QEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSVTAQTHMAWSDADNQQVKLSMPEL EELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDLASIRAFDVE" misc_feature complement(2049708..2050031) /locus_tag="SF2024" /note="Domain of unknown function (DUF4376); Region: DUF4376; pfam14301" /db_xref="CDD:433852" mobile_element complement(2050170..2051072) /note="partial" /mobile_element_type="insertion sequence:IS600" gene complement(2050213..2051031) /locus_tag="SF2025" /db_xref="GeneID:1025221" CDS complement(2050213..2051031) /locus_tag="SF2025" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707861.2" /db_xref="GeneID:1025221" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDKRLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQLPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLGHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(2050240..>2051031) /locus_tag="SF2025" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" mobile_element 2051073..2051840 /mobile_element_type="insertion sequence:IS1" gene 2051322..2051825 /gene="insB" /locus_tag="SF2026" /db_xref="GeneID:1027613" CDS 2051322..2051825 /gene="insB" /locus_tag="SF2026" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707862.1" /db_xref="GeneID:1027613" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 2051430..2051822 /gene="insB" /locus_tag="SF2026" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2051918..2052400) /locus_tag="SF2027" /db_xref="GeneID:1023840" CDS complement(2051918..2052400) /locus_tag="SF2027" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707863.1" /db_xref="GeneID:1023840" /translation="MIKPFLMTVAILTSCCAQAKILTNEEIVSRFISNVKTSADNDVD LDTDGFRQLRISCPSPSASGAIILRKASYEFGKSIGVFDFANNASPATMTFLIPIYKD DDFDSDTVGFTFAFKMPRGQFFVDVKENGNIRAGVNVNGESGVTYENCKLNMKDINDD " gene complement(2052468..2054417) /locus_tag="SF2028" /db_xref="GeneID:1025268" CDS complement(2052468..2054417) /locus_tag="SF2028" /codon_start=1 /transl_table=11 /product="tail protein" /protein_id="NP_707864.1" /db_xref="GeneID:1025268" /translation="MADSFQLKAIITAVDKVSAPLKGMQRQLKGFKKEFASLSLGAAG AGTAVLGALALPVKSAIALESKMADVRKVVDGLDTPEAFKAMTEQVRDLSTELPMSAE GIAEIVAAGGQAGIARDELMQFTDDAVKMGVAFDTTAEESGQMMAQWRTAFKLTQGEV AGLADKINYLGNTGPASAKKISDVVTRIGPLGSVAGVASGEIAAMGATIAGMGVESEI AATGIKNFMLSLTARDSATKSQKKVLRSLRISPKKLAADMQKDARGAMLHVLDSLAKV PKEKQAAVLKALFGKESLGAIAPLLTNLDLLRTNFNRVADAQQYGGSMQKEYAARAAT TENQLLLLQNQINAISSTLGETFLPSLNEGIKEMKPFLEEVRTFVRENPEVVKTIAKT GAALLTMGVAIGTLTRITKIMGSVMNMTPAKGLIALLVGGAYLIIDNWETVGPVVKKV WQEVDQVVRAMGGWEQAVKTIATVSALYIGVKAVASIRAATVAQNQWTTAAGKTGLKL KGLGKISLIGGLLELGMMAQEFEKEHPWLVKNFVADALNSGFGLNDKFDEWGKQFHDF VYDMTGWQMPRGDGYLSPDKRYTPNVSLERNQLLSLASSPATRSELKVTFDNAPPGMR VIDLPKTGDPFMKITHDVGYSPFKR" misc_feature complement(2052594..2054345) /locus_tag="SF2028" /note="Phage-related tail protein [Mobilome: prophages, transposons]; Region: COG5283" /db_xref="CDD:444094" gene complement(2054502..2054837) /locus_tag="SF2029" /db_xref="GeneID:1025734" CDS complement(2054502..2054837) /locus_tag="SF2029" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707865.1" /db_xref="GeneID:1025734" /translation="MAMNVTEIVLKKPVTAHNEMLHVLELREPTYDEIEALGFPFIIS GEGSIKLDSQVALKYIPLLAGIPCSSAAQMAKLDIFKTSMQILRFFTQSETGSTSGND STMLPGSGN" misc_feature complement(2054568..2054816) /locus_tag="SF2029" /note="Phage tail assembly chaperone proteins, E, or 41 or 14; Region: Phage_TAC_7; pfam10109" /db_xref="CDD:431061" gene complement(2054837..2055193) /locus_tag="SF2030" /db_xref="GeneID:1025264" CDS complement(2054837..2055193) /locus_tag="SF2030" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707866.1" /db_xref="GeneID:1025264" /translation="MAKIAGTCFFKVDGQQLSLTGGIEVPMNTNVRDDIVGMAGDVDY KETWRSPYVKGTFKVPKNFPVDKITTSDQMTITAELANGMVYVLSAAWLHGEANHNAE EGTADLEFHGEEGGYQ" misc_feature complement(2054849..2055193) /locus_tag="SF2030" /note="Phage tail tube protein; Region: Tail_tube; pfam10618" /db_xref="CDD:431398" gene complement(2055193..2056689) /locus_tag="SF2031" /db_xref="GeneID:1025265" CDS complement(2055193..2056689) /locus_tag="SF2031" /codon_start=1 /transl_table=11 /product="sheath protein" /protein_id="NP_707867.1" /db_xref="GeneID:1025265" /translation="MTISFNTVPSNTLVPLFYAEMNNSAANTAVTSAPALLIGHASND AAIEVNSLVLMPSADYARQICGAGSQLARMVEVYRQTDPFGELYVIAVPEARGAAATV RVTVAGEAEESGTLSLYVGRSRVQVPVVNGDDATAVATAIKEAVNGVITLPFTASSDA GVVTLTARHKGLYGNELPVCLNYYGSGGGEILPAGLRVVTEVGAAGSGAPDLTAAVAA MGDEAFDFIGLPFNDAASINMMMTEMNDSSGRWSYARQLYGHVYTAKLGTLSELVGAG DMHNQQHITLAGYEKETQSPVDELVASRLAREAVFIRNDPARPTQTGELVGMLPAPKG KRFIMTEQQTLLSHGVATAYVEGGTLQIQRSVTTYKKNAYGVADNSYLDSETLHTSAY VLRKLKSVITSKYGRHKLANDGTRFGPGQAIVTPAVIKGELLATYRQMERAGIVENYD LFKQYLIVERDADNPNRLNTLFPPDYVNQLRVFAVVNQFRLQYSEESA" misc_feature complement(2055217..2056689) /locus_tag="SF2031" /note="Mu-like prophage tail sheath protein gpL [Mobilome: prophages, transposons]; Region: gpL; COG4386" /db_xref="CDD:443512" mobile_element complement(2057198..2058461) /mobile_element_type="insertion sequence:IS600" gene complement(2057241..2058059) /locus_tag="SF2033" /db_xref="GeneID:1027616" CDS complement(2057241..2058059) /locus_tag="SF2033" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707869.1" /db_xref="GeneID:1027616" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRAPTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(2057268..>2058059) /locus_tag="SF2033" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(2058095..2058397) /locus_tag="SF2034" /db_xref="GeneID:1025736" CDS complement(2058095..2058397) /locus_tag="SF2034" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707870.1" /db_xref="GeneID:1025736" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(2058125..2058397) /locus_tag="SF2034" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element 2058463..2060396 /note="partial" /mobile_element_type="insertion sequence:ISSfl4" gene complement(2059296..2059643) /locus_tag="SF2036" /db_xref="GeneID:1025791" CDS complement(2059296..2059643) /locus_tag="SF2036" /note="Code: L; COG: COG3436" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 ORF2" /protein_id="NP_707872.1" /db_xref="GeneID:1025791" /translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF VFRGRSGKMVKILWADRDGLCLFAKLLERGRFVWPVTREGKVHLTPAQLSMLLEGIAW QHPKRTERPGIRI" misc_feature complement(2059347..2059616) /locus_tag="SF2036" /note="IS66 family insertion sequence element accessory protein TnpB; Region: IS66_TnpB; NF033819" /db_xref="CDD:411392" gene complement(2059640..2060314) /locus_tag="SF2037" /db_xref="GeneID:1025273" CDS complement(2059640..2060314) /locus_tag="SF2037" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 transposase" /protein_id="NP_707873.1" /db_xref="GeneID:1025273" /translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE FKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALT DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE MKGGIR" misc_feature complement(2059697..2060281) /locus_tag="SF2037" /note="IS66-like element accessory protein TnpA; Region: IS66_access_TnpA; NF038385" /db_xref="CDD:439678" gene complement(2060413..2060628) /locus_tag="SF2038" /db_xref="GeneID:1026906" CDS complement(2060413..2060628) /locus_tag="SF2038" /codon_start=1 /transl_table=11 /product="lysis protein S" /protein_id="NP_707874.1" /db_xref="GeneID:1026906" /translation="MKSMDKISTGIAYGTSAGSAGYWFLQWLDQVSPSQWAAIGVLGS LVLGFLTYLTNLYFKIREDKRKAARGE" misc_feature complement(2060425..2060616) /locus_tag="SF2038" /note="Bacteriophage P21 holin S; Region: Phage_holin_2_1; pfam04971" /db_xref="CDD:428228" gene complement(2060921..2060995) /locus_tag="SF4477" /db_xref="GeneID:3161783" tRNA complement(2060921..2060995) /locus_tag="SF4477" /product="tRNA-Gly" /codon_recognized="GGA" /db_xref="GeneID:3161783" gene complement(2060999..2061074) /locus_tag="SF4478" /db_xref="GeneID:3161794" tRNA complement(2060999..2061074) /locus_tag="SF4478" /product="tRNA-Thr" /codon_recognized="ACA" /db_xref="GeneID:3161794" gene complement(2061077..2061153) /locus_tag="SF4479" /db_xref="GeneID:3161778" tRNA complement(2061077..2061153) /locus_tag="SF4479" /product="tRNA-Lys" /codon_recognized="AAA" /db_xref="GeneID:3161778" gene complement(2061155..2061230) /locus_tag="SF4480" /db_xref="GeneID:3161798" tRNA complement(2061155..2061230) /locus_tag="SF4480" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161798" gene complement(2061429..2062112) /locus_tag="SF2039" /db_xref="GeneID:1025262" CDS complement(2061429..2062112) /locus_tag="SF2039" /codon_start=1 /transl_table=11 /product="Q antiterminator of prophage" /protein_id="NP_707875.2" /db_xref="GeneID:1025262" /translation="MNNQYLQFVREQLIIATADLSGATKGQLEAWQENAMFDTGRYRR KKIRYRDEVTGKMITRDNPPIPGKQSLAKGTSIPLVSPVEFSTSSWRRAVLSLEEHYK AWLLWCYSGSICWEYQIAITQWAWNEFNAQSGTRKIAGKTQERLKKLIWLAAQAVKAE LFGGEGYEYQELALLAGVTTKNWSKTFTRHWVAMKHIFHRLDSEALLFVMRTRSKKRR HFQSKVLQK" misc_feature complement(2061468..2062100) /locus_tag="SF2039" /note="Phage antitermination protein Q; Region: Phage_antiter_Q; pfam06323" /db_xref="CDD:428887" gene complement(2062109..2062474) /locus_tag="SF2040" /db_xref="GeneID:1025267" CDS complement(2062109..2062474) /locus_tag="SF2040" /codon_start=1 /transl_table=11 /product="crossover junction endodeoxyribonuclease" /protein_id="NP_707876.1" /db_xref="GeneID:1025267" /translation="MTERIEFVLPYPPTVNTYWRRRGSTYFVSKAGERYRRDVALIVR QQRLKLNLSGRLAIKIIAEPPDKRRRDLDNILKAPLDALTHAGLLIDDEQFDEINIVR GQLVPGGRLGIKITELGCA" misc_feature complement(2062121..2062468) /locus_tag="SF2040" /note="Holliday junction resolvase RusA (prophage-encoded endonuclease) [Replication, recombination and repair]; Region: RusA; COG4570" /db_xref="CDD:443627" gene complement(2062475..2063461) /locus_tag="SF2041" /db_xref="GeneID:1025735" CDS complement(2062475..2063461) /locus_tag="SF2041" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707877.2" /db_xref="GeneID:1025735" /translation="MPVFHNTRVLVEPEPKSMRNLPSGVVPAVRQPLVEDKTLLPFFS NARVIRAAGGAGALSDWLLRHIKSCQWPHGDYHHSETVIHRYGTGAMVLCWHCDNQLR DQTSESLEQLAHQNLSAWMIDVIGHAISGTQERELSLAELSWWAVRNQVADALPEAVL RRSLGLRAEKIRSMYRESDIVPGEQTATSILKQRTKNLAPLPHAHQQQNPPQEETVVS IAVDPESPAQYLQRQKPQREEMPVYTRWVKTQKCMTCGNQADDPHHIIGHGLGGMGTK ADDLFVIPLCRKCHNELHAGVKDFEEKHGSQLLLLIRFLMHARNSGVLKWKA" misc_feature complement(2062535..2063053) /locus_tag="SF2041" /note="Protein of unknown function (DUF968); Region: DUF968; cl23554" /db_xref="CDD:474016" gene complement(2063535..2063813) /locus_tag="SF2042" /db_xref="GeneID:1026537" CDS complement(2063535..2063813) /locus_tag="SF2042" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707878.1" /db_xref="GeneID:1026537" /translation="MAHDTKFYNSDNSAAPASRHGRRSHAFKSDGYQHDPCTEEQAEW LIQRYRRHGYEIKKALSLDYRHWIIFVRLPYSERPPRPSCTFQQRIWR" gene 2063616..2063939 /locus_tag="SF2042a" /db_xref="GeneID:16608338" CDS 2063616..2063939 /locus_tag="SF2042a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439261.1" /db_xref="GeneID:16608338" /translation="MTIIETEGFLNLVSVSAVALNQPFSLFFGAGVVLIPVRFECMRT PPVPAGRGGRVIRIVKFGIVRHLFSLLAQQVPVVQADGWIVNQNDQKKQNPPKRVKCG CVEDA" gene complement(2063981..2064193) /locus_tag="SF2042b" /db_xref="GeneID:16608339" CDS complement(2063981..2064193) /locus_tag="SF2042b" /codon_start=1 /transl_table=11 /product="regulatory protein" /protein_id="YP_008439262.1" /db_xref="GeneID:16608339" /translation="MLNTCRLASYVPKGKEKQAMKQQKAMLIALIVICLTVIVTALVT RKDLCEVRIRTGQTEVAVFTAYEPEE" misc_feature complement(2063996..2064118) /locus_tag="SF2042b" /note="Hok/gef family; Region: HOK_GEF; pfam01848" /db_xref="CDD:426473" gene complement(2064396..2064614) /locus_tag="SF2042c" /db_xref="GeneID:16608340" CDS complement(2064396..2064614) /locus_tag="SF2042c" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_008439263.1" /db_xref="GeneID:16608340" /translation="MFKCYCTLIVGGIMKNALQFLFVAFWLFASCMPIIFTARYMEKI DVLILMFGHINALFLGVFMAVMCIEYWR" gene complement(2064788..2065123) /locus_tag="SF2043" /db_xref="GeneID:1025253" CDS complement(2064788..2065123) /locus_tag="SF2043" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_707879.2" /db_xref="GeneID:1025253" /translation="MARVEGELFKIARASLEAEPIAWRYRYVKKGVMDSQGELWVGDW KYVPKKEDCNDRPNYEIQALFTAPPVPVTSEELVKAVHFYEQLKRENPPASGNQINGL TMSVKRPAN" gene complement(2066449..2066538) /locus_tag="SF4481" /db_xref="GeneID:3161786" tRNA complement(2066449..2066538) /locus_tag="SF4481" /product="tRNA-Ser" /codon_recognized="UCG" /db_xref="GeneID:3161786" gene 2066593..2067429 /locus_tag="SF2045" /db_xref="GeneID:1026909" CDS 2066593..2067429 /locus_tag="SF2045" /note="Code: S; COG: COG3228" /codon_start=1 /transl_table=11 /product="DgsA anti-repressor MtfA" /protein_id="NP_707881.1" /db_xref="GeneID:1026909" /translation="MQFCSSDEFASKTMIKWPWKVQESAHQTALPWQEALSIPLLTCL TEQEQSKLVALAERFLQQKRLVPLQGFELNSLRSCRIALLFCLPVLELGLEWLDGFHE VLIYPAPFVVDDEWEDDIGLVHNQRIVQSGQSWQQGPIVLNWLDIQDSFDASGFNLII HEVAHKLDTRNGDRASGVPFISLREVAGWEHDLHAAMNNIQEEIELVGENAASIDAYA ASDPAECFAVLSEYFFSAPELFAPRFPSLWQRFCQFYQQDPLQRLHHANDTDSFSATN VH" misc_feature 2066632..2067411 /locus_tag="SF2045" /note="DgsA anti-repressor MtfA; Provisional; Region: PRK15410" /db_xref="CDD:185308" gene 2067530..2067605 /locus_tag="SF4482" /db_xref="GeneID:3161858" tRNA 2067530..2067605 /locus_tag="SF4482" /product="tRNA-Asn" /codon_recognized="AAC" /db_xref="GeneID:3161858" gene 2067986..2069028 /locus_tag="SF2046" /pseudogene="unknown" /db_xref="GeneID:1025733" mobile_element complement(2069128..2070376) /mobile_element_type="insertion sequence:IS911" gene complement(2069136..2069975) /locus_tag="SF2048" /db_xref="GeneID:1025278" CDS complement(2069136..2069975) /locus_tag="SF2048" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_707884.1" /db_xref="GeneID:1025278" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature complement(2069145..2069954) /locus_tag="SF2048" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(2070002..2070340) /locus_tag="SF2049" /db_xref="GeneID:1026550" CDS complement(2070002..2070340) /locus_tag="SF2049" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_707885.1" /db_xref="GeneID:1026550" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature complement(2070032..2070301) /locus_tag="SF2049" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" misc_feature 2070377..2072304 /note="'Similar to Escherichia coli K12 transport protein, shikimate gi: 1788292 (439 aa). BLAST with identity of 97% in 643 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'" mobile_element 2070867..2071630 /note="partial" /mobile_element_type="insertion sequence:IS600" gene 2070931..2071233 /locus_tag="SF2051" /db_xref="GeneID:1026726" CDS 2070931..2071233 /locus_tag="SF2051" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707886.1" /db_xref="GeneID:1026726" /translation="MSRKTRRYSKEFKAEAVRTVLENQLSISEDASRLFLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 2070931..2071203 /locus_tag="SF2051" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2071269..2072060 /locus_tag="SF2052" /db_xref="GeneID:1025259" CDS 2071269..2072060 /locus_tag="SF2052" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707887.1" /db_xref="GeneID:1025259" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPA GLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYR FNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <2071269..2072033 /locus_tag="SF2052" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" mobile_element 2071629..2072103 /note="partial" /mobile_element_type="insertion sequence:IS600" gene 2072412..2073866 /gene="amn" /locus_tag="SF2053" /db_xref="GeneID:1025921" CDS 2072412..2073866 /gene="amn" /locus_tag="SF2053" /note="Code: F; COG: COG0775" /codon_start=1 /transl_table=11 /product="AMP nucleosidase" /protein_id="NP_707888.2" /db_xref="GeneID:1025921" /translation="MNNKGSGLTPAQALDKLDALYEQSVVALRNAIGKYITIGELPDE NARKQGLFVYPSLTVTWDGSTTNPPKTRAFGRFTHAGSYTTTITRPTLFRSYLNEQLT LLYQDYGAHISVQPSQHEIPYPYVIDGSELTLDRSMSADLTRYFPTTELAQIGDETAD GIYHPTEFSPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGC SQILDPDSPYIALSCAGGNWITAETEAPEEAISDLAWKKHQMPAWHLITADGQGITLV NIGVGPSNAKTICDHLAVLRPDIWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAV LPPDIPIPSIAEVQRALYDATKLVSGRPGEEVKQRLRTGTVVTTDDRNWELRYSASAL RFNLSRAVAIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAIS EHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPFR" misc_feature 2072412..2073863 /gene="amn" /locus_tag="SF2053" /note="AMP nucleosidase; Provisional; Region: PRK08292" /db_xref="CDD:236222" gene 2074209..2074925 /locus_tag="SF2054" /db_xref="GeneID:1025730" CDS 2074209..2074925 /locus_tag="SF2054" /note="Code: S; COG: COG0217" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707889.1" /db_xref="GeneID:1025730" /translation="MGRKWANIVAKKTAKDGATSKIYAKFGVEIYAAAKQGEPDPELN TSLKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMIIAETLTSN VNRTIANVRTIFNKKGGNIGAAGSVSYMFDNTGVIVFKGTDPDHIFEILLEAEVDVRD VTEEEGNIVIYTEPADLHKGIAALKAAGITEFSTTELEMIAQSEVELSPEDLEIFEGL VDALEDDDDVQKVYHNVANL" misc_feature 2074209..2074916 /locus_tag="SF2054" /note="YebC/PmpR family DNA-binding transcriptional regulator; Region: PRK12378" /db_xref="CDD:237084" gene complement(2075381..2075456) /locus_tag="SF4483" /db_xref="GeneID:3161838" tRNA complement(2075381..2075456) /locus_tag="SF4483" /product="tRNA-Asn" /codon_recognized="AAC" /db_xref="GeneID:3161838" gene complement(2075557..2077183) /gene="yeeO" /locus_tag="SF2055" /pseudo /db_xref="GeneID:1025361" misc_feature complement(2075557..2077183) /gene="yeeO" /locus_tag="SF2055" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 2367126 (548 aa). BLAST with identity of 98% in 542 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2077189..2077264 /locus_tag="SF4484" /db_xref="GeneID:3161841" tRNA 2077189..2077264 /locus_tag="SF4484" /product="tRNA-Asn" /codon_recognized="AAC" /db_xref="GeneID:3161841" gene complement(2077302..2078252) /gene="cbl" /locus_tag="SF2056" /db_xref="GeneID:1026621" CDS complement(2077302..2078252) /gene="cbl" /locus_tag="SF2056" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="transcriptional regulator Cbl" /protein_id="NP_707890.1" /db_xref="GeneID:1026621" /translation="MNFQQLKIIREAARQDYNLTEVANMLFTSQSGVSRHIRELEDEF GIEIFVRRGKRLLGMTEPGKALLVIAERILNEASNVRRLADLFTNDTSGVLTIATTHT QARYSLPEVIKAFRELFPEVRLELIQGSPQEIATLLQNGEADIGIASERLSNDPQLVA FPWFCWHHSLLVPLDHPLTQITPLTLESIAKWPLITYRQGITGRSRTDDAFTRKGLPA DIVLSAQDSDVIKTYVALGLGIGLVAEQSSGEQEEENLIRLDTRHLFDANTVWLGLKR GQLQRNYVWRFLELCNAGLSVEDIKRQVMENSEEEIDYQI" misc_feature complement(2077305..2078252) /gene="cbl" /locus_tag="SF2056" /note="HTH-type transcriptional regulator Cbl; Region: cbl; PRK12679" /db_xref="CDD:183676" gene complement(2078354..2079271) /gene="nac" /locus_tag="SF2057" /db_xref="GeneID:1025279" CDS complement(2078354..2079271) /gene="nac" /locus_tag="SF2057" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="nitrogen assimilation transcriptional regulator" /protein_id="NP_707891.2" /db_xref="GeneID:1025279" /translation="MNFRRLKYFVKIVDIGSLTQAAEVLHIAQPALSQQVAILEGELN QQLLIRTKRGVTPTDAGKILYTHARAILRQCEQAQLAVHNVGQSLSGQVSIGFAPGTA ASSITMPLLQAVRAEFPEVVIYLHENSGAVLNEKLINHQLDMAVIYEHSPVAGVSSQA LLKEDLFLVGTQDCPGQNVDVNAIAQMNLFLPSDYSAVRLRVDEAFSLRRLTAKVIGE IESIATLTAAIASGMGVAVLPESAARSLCGAVNGWMSRITTPSMSLSLSLNLPARANL SPQAQAVKELLMSVISSPVMEKRQWQLVS" misc_feature complement(2078357..2079271) /gene="nac" /locus_tag="SF2057" /note="nitrogen assimilation transcriptional regulator; Provisional; Region: PRK11233" /db_xref="CDD:183045" gene 2079599..2079675 /locus_tag="SF4485" /db_xref="GeneID:3161857" tRNA 2079599..2079675 /locus_tag="SF4485" /product="tRNA-OTHER" /note="tRNA-Undet; codon recognized: ???" /db_xref="GeneID:3161857" gene complement(2079731..2080666) /gene="erfK" /locus_tag="SF2058" /db_xref="GeneID:1026578" CDS complement(2079731..2080666) /gene="erfK" /locus_tag="SF2058" /note="Code: S; COG: COG1376" /codon_start=1 /transl_table=11 /product="L,D-transpeptidase" /protein_id="NP_707892.1" /db_xref="GeneID:1026578" /translation="MMRRVNILCSFALLFASQNSLAVTYPLPPEGSRLVGQSLTVTVP DHNTQPLETFAAQYGQGLSNMLEANPGADVFLPKPGSQLTIPQQLILPATVRKGIVVN VAEMRLYYYPPDSNTVEVFPIGIGQAGRETPRNWVTTVERKQEAPTWTPTPNIRREYA KRGESLPAFVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKY LFDNVPVGTRVQIIDQPVKYTTEPDGSKWLEVHEPLSRNRAEYESDRKVPLPVTPSLR AFINGQEVDVNRANAALQHRSGMPVQISSGSRQMF" misc_feature complement(2079734..2080663) /gene="erfK" /locus_tag="SF2058" /note="L,D-transpeptidase; Provisional; Region: PRK10190" /db_xref="CDD:182294" gene complement(2080728..2081807) /gene="cobT" /locus_tag="SF2059" /db_xref="GeneID:1025890" CDS complement(2080728..2081807) /gene="cobT" /locus_tag="SF2059" /note="Code: H; COG: COG2038" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase" /protein_id="NP_707893.1" /db_xref="GeneID:1025890" /translation="MQIIADLLNTIPAINSAAMSRAQRHVDGLFKPVGSLGKLEALAI QLAGMPGVNGIPHVGKKAVLVMCADHGVWEEGVAISPKEVTAIQAENMTRGTTGVCVL AAQAGANVHVIDVGIDTAEPIPGLINMRVARGSGNIASAPAMSRRQAEKLLLDVICYT RELAKNGVTLFGVGELGMANTTPAAAIVSTITGRDPEEVVGIGANLPTDKLANKIDVV RRAITLNQPNPQDGVDVLAKVGGFDLVGIAGVMLGAASCGLPVLLDGFLSYAAALAAC QMSPAIKPYLIPSHLSAEKGARIALSHLGLEPYLNMDMRLGEGSGAALAMSIIEAACA IYNNMGELAASNIVLPGNTTSDLNS" misc_feature complement(2080755..2081807) /gene="cobT" /locus_tag="SF2059" /note="NaMN:DMB phosphoribosyltransferase [Coenzyme transport and metabolism]; Region: CobT; COG2038" /db_xref="CDD:441641" gene complement(2081819..2082562) /gene="cobS" /locus_tag="SF2060" /db_xref="GeneID:1026747" CDS complement(2081819..2082562) /gene="cobS" /locus_tag="SF2060" /note="Code: H; COG: COG0368" /codon_start=1 /transl_table=11 /product="adenosylcobinamide-GDP ribazoletransferase" /protein_id="NP_707894.2" /db_xref="GeneID:1026747" /translation="MSKLFWAMLSFITRLPVPRRWSQGLDFEHYSRGIITFPLIGLLL GAISGLVFMVLQAWCGAPLAALFSVLVLALMTGEFHLDGLADTCDGVFSARSRDRMLE IMRDSRLGTHGGLALIFVVLAKILVLSELALRGEPILASLAAACAVSRGTAALLMYRH RYAREEGLGNVFIGKIDGRQTCVTLGLAAIFAAVLLLGMHGVAAMVVTMVAIFILGQL LKRTLGGQTGDTLGAAIELGELVFLLALL" misc_feature complement(2081825..2082562) /gene="cobS" /locus_tag="SF2060" /note="cobalamin 5'-phosphate synthase/cobalamin synthase; Region: cobS; TIGR00317" /db_xref="CDD:213524" gene complement(2082559..2083068) /gene="cobU" /locus_tag="SF2061" /db_xref="GeneID:1027488" CDS complement(2082559..2083068) /gene="cobU" /locus_tag="SF2061" /note="Code: H; COG: COG2087" /codon_start=1 /transl_table=11 /product="adenosylcobinamide kinase/adenosylcobinamide phosphate guanyltransferase" /protein_id="NP_707895.1" /db_xref="GeneID:1027488" /translation="MVVSAIASTPHSSQVLYIATSQILDDEMAARIEHHRQSRPEHWR TVERWQHLDELIHADINPNEAVLLECVTTMVTNLLFDYGGDKDPDEWDYQAMEQAINA EIQSLIAACQRCPAKVVLVTNEVGMGIVPESRLARHFRDIAGRVNQQLAAAANEVWLV VSGIGVKIK" misc_feature complement(2082562..2083029) /gene="cobU" /locus_tag="SF2061" /note="adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated; Region: cobU; PRK05800" /db_xref="CDD:235612" misc_feature complement(2082964..2082966) /gene="cobU" /locus_tag="SF2061" /note="putative catalytic site [active]" /db_xref="CDD:410861" mobile_element complement(2083037..2084300) /mobile_element_type="insertion sequence:IS600" gene complement(2083080..2083898) /locus_tag="SF2062" /db_xref="GeneID:1025277" CDS complement(2083080..2083898) /locus_tag="SF2062" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_707896.1" /db_xref="GeneID:1025277" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATREGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(2083107..>2083898) /locus_tag="SF2062" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(2083934..2084236) /locus_tag="SF2063" /db_xref="GeneID:1025282" CDS complement(2083934..2084236) /locus_tag="SF2063" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_707897.1" /db_xref="GeneID:1025282" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(2083964..2084236) /locus_tag="SF2063" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element 2084425..2085730 /mobile_element_type="insertion sequence:IS629" gene 2084479..2084805 /locus_tag="SF2064" /db_xref="GeneID:1025792" CDS 2084479..2084805 /locus_tag="SF2064" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_707898.1" /db_xref="GeneID:1025792" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature 2084482..2084769 /locus_tag="SF2064" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2085020..2085688 /locus_tag="SF2065" /db_xref="GeneID:1027348" CDS 2085020..2085688 /locus_tag="SF2065" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 integrase core domain-containing protein" /protein_id="NP_707899.1" /db_xref="GeneID:1027348" /translation="MLREGIRVARCTVARLMAVMGLAGVLRGKKVRTTISRKAVAAGD RVNRQFVAERPDQLWVADFTYVSTWRGFVYVAFIIDVFAGCIVGWRVSSSMETTFVLD ALEQALWARRPSGTVHHSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESIN GLYKAEVIHRKSWKNRAEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGND DLAA" misc_feature 2085020..2085685 /locus_tag="SF2065" /note="DDE superfamily endonuclease; Region: DDE_3; cl46863" /db_xref="CDD:481203" gene 2085910..2086392 /locus_tag="SF2066" /db_xref="GeneID:1025732" CDS 2085910..2086392 /locus_tag="SF2066" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707900.1" /db_xref="GeneID:1025732" /translation="MRYPTREYQHDSPSDLLLRRPQGIKPKKKIVKIRDSGLTRKVIS ASTEHRIDAYLLVRTTFHGRSSSTRLEGHSGSMLRIWRRYASGSIPFRRQVPAFPATS RNLSAEAGIRGKNALPGHESPGHWSSNQSRFSQHGTNIFGEKLVTGSWSAQRVSNQCS " gene complement(2086551..2086946) /gene="yeeX" /locus_tag="SF2067" /db_xref="GeneID:1025281" CDS complement(2086551..2086946) /gene="yeeX" /locus_tag="SF2067" /note="Code: S; COG: COG2926" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707901.1" /db_xref="GeneID:1025281" /translation="MLALTNSGCLNESDSHIIRGIKMETTKPSFQDVLEFVRLFRRKN KLQREIQDVEKKIRDNQKRVLLLDNLSDYIKPGMSVEAIQGIIASMKGDYEDRVDDYI IKNAELSKERRDISKKLKAMGEMKNGEAK" misc_feature complement(2086575..2086874) /gene="yeeX" /locus_tag="SF2067" /note="Protein of unknown function (DUF496); Region: DUF496; cl23839" /db_xref="CDD:474076" gene complement(2087052..2087173) /gene="yeeA" /locus_tag="SF2068" /pseudo /db_xref="GeneID:1025731" misc_feature complement(2087052..2087173) /gene="yeeA" /locus_tag="SF2068" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788318 (353 aa). BLAST with identity of 97% in 40 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element 2087161..2087825 /note="partial" /mobile_element_type="insertion sequence:IS629" gene 2087163..2087783 /locus_tag="SF2069" /db_xref="GeneID:1025276" CDS 2087163..2087783 /locus_tag="SF2069" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 integrase core domain-containing protein" /protein_id="NP_707902.1" /db_xref="GeneID:1025276" /translation="MVVIGLAGVLRGKKVRTTISRKAVAAGDRVNRQFVAERPDQLWV ADFTYVSTWRGFVYVAFIIDVFAGYIVGWRVSSSMETTFVLDALEQALWARRPSGTVH HSDKGSQYVSLAYTQRLKEAGLLASTGSTGDSYDNAMAESINGLYKAEVIHRKSWKNR AEVELATLTWVDWYNNRRLLERLGHIPPAEAEKAYYASIGNDDLAA" misc_feature <2087163..2087780 /locus_tag="SF2069" /note="DDE superfamily endonuclease; Region: DDE_3; cl46863" /db_xref="CDD:481203" gene 2088328..2089752 /gene="sbcB" /locus_tag="SF2070" /db_xref="GeneID:1025875" CDS 2088328..2089752 /gene="sbcB" /locus_tag="SF2070" /note="Code: L; COG: COG2925" /codon_start=1 /transl_table=11 /product="exonuclease I" /protein_id="NP_707903.1" /db_xref="GeneID:1025875" /translation="MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGE PEVFYCKPADDYLPRPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYN NVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMA LIDVPQMKPLAHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMADLAGDISPLLELDID TLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLK ILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPA LDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRHQVFTPEFLQGYADELQMLV QQYADDKEKVALLKALWQYAEEIV" misc_feature 2088334..2089749 /gene="sbcB" /locus_tag="SF2070" /note="exonuclease I; Provisional; Region: sbcB; PRK11779" /db_xref="CDD:236979" gene complement(2089795..2090022) /gene="yeeD" /locus_tag="SF2071" /db_xref="GeneID:1025869" CDS complement(2089795..2090022) /gene="yeeD" /locus_tag="SF2071" /note="Code: K; COG: COG0425" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707904.1" /db_xref="GeneID:1025869" /translation="MAIKKLDVVTQVCPFPLIEAKAALAEMASGDELVIEFDCTQATE AIPQWAAEEGHAITDYQQIGDAAWSITVQKA" misc_feature complement(2089801..2090016) /gene="yeeD" /locus_tag="SF2071" /note="thiosulfate utilization sulfurtransferase TsuB/YeeD; Region: TusA_like_YeeD; NF041048" /db_xref="CDD:468977" gene complement(2090036..2091094) /gene="yeeE" /locus_tag="SF2072" /db_xref="GeneID:1025883" CDS complement(2090036..2091094) /gene="yeeE" /locus_tag="SF2072" /note="Code: R; COG: COG2391" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_707905.1" /db_xref="GeneID:1025883" /translation="MFSMILSGLICGALLGFVMQRGRFCLTGGFRDMYIAKNNRMFYA LLIAISAQSVGVFALIQAGLLTYEAGAFPWLGTVIGGYLFGLGIVLAGGCATGTWYRA GEGLIGSWIALFTYMVMSAVMRSPHASGLNQTLQHYTTEHNSIAETFNLSVWPLVTVL LVITLWVVMKELKKPKLKVATLPPRRTGIAHILFEKRWHPFVTAVLIGLIALLAWPLS EATGRMFGLGVTSPTANILQFLVAGDVKYINWGVFLVLGIFVEAFIAAKASREFRVRA ADAQTTLRSGLGGVLMGFGASIAGGCSIGNGLVMTAMMTWQGWIGLVFMILGVWTASW LVYVRPQRKARLATAAAN" misc_feature complement(2090048..2091091) /gene="yeeE" /locus_tag="SF2072" /note="thiosulfate utilization transporter TsuA/YeeE; Region: thio_trans_TsuA; NF041049" /db_xref="CDD:468978" gene complement(2091273..2092631) /gene="yeeF" /locus_tag="SF2073" /db_xref="GeneID:1025292" CDS complement(2091273..2092631) /gene="yeeF" /locus_tag="SF2073" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="amino acid/amine transport protein" /protein_id="NP_707906.1" /db_xref="GeneID:1025292" /translation="MSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGIVS GLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGWSS LLDYLFAPMINILLAKIYFEALVPSIPSWMFVVALVAFMTAFNLRSLKSVANVNTVIV VLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTGFD GISNLSEETKDAERVIPRAIFLTALIGGMIFIFATYFLQLYFPDISRFKDPDASQPEI MLYVAGKAFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPKWR TPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKTLK DHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAAIGLIYLACVTKSFRNPVPQYED VA" misc_feature complement(2091327..2092610) /gene="yeeF" /locus_tag="SF2073" /note="Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:440297" gene complement(2092844..2093827) /gene="yeeY" /locus_tag="SF2074" /db_xref="GeneID:1025271" CDS complement(2092844..2093827) /gene="yeeY" /locus_tag="SF2074" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_707907.2" /db_xref="GeneID:1025271" /translation="MKPLLDVLMILDAIEKEGSFAAASAKLYKTPSALSYTVHKLESD LNIQLLDRSGHRAKFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT FPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFG FSRLGDLEQVFAVAPHHPLAQEEEPLNRRIIKRYRAIVVGDTAQAGASTASQLLDEQE AITVFDFKTKLELQISGLGCGYLPRYLAQRFLDSGALIEKKVVAQTLFEPVWIGWNEQ TAGLASGWWRDEILANSAIAGVYAKSDDGKSAIQRKIIMTSLSFSCHFPPI" misc_feature complement(<2093384..2093815) /gene="yeeY" /locus_tag="SF2074" /note="LysR transcriptional regulator; Provisional; Region: rbcR; CHL00180" /db_xref="CDD:177082" misc_feature complement(2092961..2093548) /gene="yeeY" /locus_tag="SF2074" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature complement(order(2093126..2093131,2093135..2093140, 2093156..2093173,2093444..2093464,2093468..2093470, 2093480..2093482,2093489..2093494,2093498..2093503)) /gene="yeeY" /locus_tag="SF2074" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene complement(2093873..2094697) /locus_tag="SF2075" /db_xref="GeneID:1025269" CDS complement(2093873..2094697) /locus_tag="SF2075" /note="Code: MG; COG: COG0451" /codon_start=1 /transl_table=11 /product="sugar metabolism protein" /protein_id="NP_707908.1" /db_xref="GeneID:1025269" /translation="MKKVAIVGLGWLGMPLAMSLSARGWQVTGSKTTQDGVEAARMSG IDSYLLRMEPELVCDSDDLDALMDADALVITLPARRSGPGDEFYLQAVQELVDSALAH RIPRIIFTSSTSVYGDAQGTVKETTPRNPVTNSGRVLEELEDWLHNLPGTSVDILRLA GLVGPGRHPGRFFAGKTAPDGEHGVNLVHLEDVIGAITLLLQAPKGGHIYNICAPAHP ARNVFYPQMARLLGLQPPQFRNSLDSGKGKIIDGSRICNELGFEYQYPDPLVMPLE" misc_feature complement(2093921..2094688) /locus_tag="SF2075" /note="atypical (a) SDRs, subgroup 4; Region: SDR_a4; cd05266" /db_xref="CDD:187576" misc_feature complement(order(2094212..2094223,2094281..2094283, 2094293..2094295,2094362..2094370,2094467..2094475, 2094599..2094607,2094662..2094670,2094674..2094676)) /locus_tag="SF2075" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187576" gene complement(2094780..2095034) /gene="yoeB" /locus_tag="SF2076" /db_xref="GeneID:1025103" CDS complement(2094780..2095034) /gene="yoeB" /locus_tag="SF2076" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707909.1" /db_xref="GeneID:1025103" /translation="MKLIWSEESWDDYLYWQETDKRIVKKINELIKDTRRTPFEGKGK PEPLKHNLSGFWSRRITEEHRLVYAVTDDSLLIAACRYHY" misc_feature complement(2094783..2095034) /gene="yoeB" /locus_tag="SF2076" /note="Toxin component of the Txe-Axe toxin-antitoxin module, Txe/YoeB family [Defense mechanisms]; Region: COG4115" /db_xref="CDD:443291" mobile_element complement(2095041..2095808) /mobile_element_type="insertion sequence:IS1" gene complement(2095056..2095451) /gene="insB" /locus_tag="SF2077" /db_xref="GeneID:1026772" CDS complement(2095056..2095451) /gene="insB" /locus_tag="SF2077" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707910.1" /db_xref="GeneID:1026772" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(2095059..2095448) /gene="insB" /locus_tag="SF2077" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2095478..2095753) /gene="insA" /locus_tag="SF2078" /db_xref="GeneID:1025275" CDS complement(2095478..2095753) /gene="insA" /locus_tag="SF2078" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707911.1" /db_xref="GeneID:1025275" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<2095481..2095732) /gene="insA" /locus_tag="SF2078" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(2095787..2096059) /gene="yefM" /locus_tag="SF2079" /db_xref="GeneID:1025294" CDS complement(2095787..2096059) /gene="yefM" /locus_tag="SF2079" /note="Code: S; COG: COG2161" /codon_start=1 /transl_table=11 /product="antitoxin YefM" /protein_id="NP_707912.1" /db_xref="GeneID:1025294" /translation="MRTISYSEARQNLSATMMKAVEDHAPILITRQNGEACVLMSLEE YNSLEETAYLLRSPANARRLMDSIDSLKSGKGTEKDIIEWVMLPTY" misc_feature complement(2095811..2096059) /gene="yefM" /locus_tag="SF2079" /note="YoeB-YefM toxin-antitoxin system antitoxin YefM; Region: PRK11409" /db_xref="CDD:171099" gene 2096529..2097428 /gene="hisG" /locus_tag="SF2081" /db_xref="GeneID:1025908" CDS 2096529..2097428 /gene="hisG" /locus_tag="SF2081" /note="Code: E; COG: COG0040" /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase" /protein_id="NP_707914.2" /db_xref="GeneID:1025908" /translation="MTDNTRLRIAMQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE NMPIDILRVRDDDIPCLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYFTLRRLDFG GCRLSLATPVDEAWDGPLSLNGKRIATSYPHLLKRYLDQKGISFKSCLLNGSVEVAPR AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMEESKQQLIDKLLTRIQ GVIQARESKYIMMHAPTERLDEVIALLPGAERPTILPLAGDQQRVAMHMVSSETLFWE TMEKLKALGASSILVLPIEKMME" misc_feature 2096541..2097422 /gene="hisG" /locus_tag="SF2081" /note="ATP phosphoribosyltransferase [Amino acid transport and metabolism]; Region: HisG; COG0040" /db_xref="CDD:439810" gene 2097434..2098738 /gene="hisD" /locus_tag="SF2082" /db_xref="GeneID:1025296" CDS 2097434..2098738 /gene="hisD" /locus_tag="SF2082" /note="Code: E; COG: COG0141" /codon_start=1 /transl_table=11 /product="bifunctional histidinal dehydrogenase/ histidinol dehydrogenase" /protein_id="NP_707915.2" /db_xref="GeneID:1025296" /translation="MSFNTIIDWNSCTAEQQRQLLMRPAISASESITRTVNDILDNVK TRGDEALREYSAKFDKTTVTALKVSADEIAAASERLSDELKQAMAVAVKSIETFHTAQ KLPPVDVETQLGVRCQQVTRPVASVGLYIPGGSAPLFSTVLMLATPARIAGCKKVVLC SPPPIADEILYAAQLCDVQDVFNVGGAQAIAALAFGTESVPKVDKIFGPGNAFVTEAK RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDAD MARRVAEAVERQLAELPRAETTRQALNASRLIVTKDLAQCVEISNQYGPEHLIIQTRN ARELVDGITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV QELSKEGFSALASTIETLAAAERLTAHKNAVTLRVNVLKEQA" misc_feature 2097446..2098714 /gene="hisD" /locus_tag="SF2082" /note="bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed; Region: hisD; PRK00877" /db_xref="CDD:234853" misc_feature order(2097605..2097607,2097821..2097823,2097827..2097832, 2097854..2097856,2097917..2097919,2097986..2097991, 2097995..2097997,2098058..2098066,2098070..2098075, 2098217..2098219) /gene="hisD" /locus_tag="SF2082" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature order(2097680..2097685,2097692..2097697,2097701..2097703, 2097710..2097715,2097722..2097727,2097734..2097739, 2097758..2097760,2097764..2097766,2097776..2097790, 2097797..2097799,2097803..2097805,2097839..2097853, 2098043..2098045,2098088..2098090,2098100..2098102, 2098181..2098186,2098193..2098198,2098202..2098210, 2098214..2098219,2098424..2098426,2098439..2098441, 2098448..2098453,2098457..2098483,2098487..2098489, 2098493..2098498,2098502..2098516,2098520..2098522, 2098526..2098528,2098556..2098561,2098565..2098579, 2098583..2098588,2098595..2098618,2098661..2098666, 2098670..2098690) /gene="hisD" /locus_tag="SF2082" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119329" misc_feature order(2097845..2097847,2097851..2097853,2098142..2098144, 2098217..2098219,2098409..2098414,2098499..2098501, 2098511..2098516,2098532..2098534,2098673..2098675, 2098679..2098681,2098688..2098690) /gene="hisD" /locus_tag="SF2082" /note="product binding site [active]" /db_xref="CDD:119329" misc_feature order(2097851..2097853,2098142..2098144,2098208..2098210, 2098217..2098219,2098409..2098414,2098499..2098501, 2098511..2098516,2098532..2098534,2098673..2098675, 2098679..2098681,2098688..2098690) /gene="hisD" /locus_tag="SF2082" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature order(2098208..2098210,2098217..2098219,2098511..2098513, 2098688..2098690) /gene="hisD" /locus_tag="SF2082" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:119329" misc_feature 2098409..2098414 /gene="hisD" /locus_tag="SF2082" /note="catalytic residues [active]" /db_xref="CDD:119329" gene 2098735..2099805 /gene="hisC" /locus_tag="SF2083" /db_xref="GeneID:1026780" CDS 2098735..2099805 /gene="hisC" /locus_tag="SF2083" /note="Code: E; COG: COG0079" /codon_start=1 /transl_table=11 /product="histidinol-phosphate aminotransferase" /protein_id="NP_707916.1" /db_xref="GeneID:1026780" /translation="MSTVTITDLARENVRNLTPYQSARRLGGNGDVWLNANEYPTAVE FKLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFCEPGKDA ILYCPPTYGMYSVSAETIGVECRTVPTLENWQLDLQGISDKLDGVKVVYVCSPNNPTG QLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASLAGWLAEYPHLAILRTLSKAFAL AGLRCGFTLANEEVINLLMKVIPPYPLSTPVADIAAQALSPQGIVAMSERVAQIITER EYLIAALKEIPCVEQVFDSETNYILARFKASSAVFKSLWDQGIILRDQNKQPSLSGCL RITVGTREESQRVIDALRAEQV" misc_feature 2098765..2099790 /gene="hisC" /locus_tag="SF2083" /note="histidinol-phosphate aminotransferase; Region: hisC; TIGR01141" /db_xref="CDD:273467" gene 2099805..2100872 /gene="hisB" /locus_tag="SF2084" /db_xref="GeneID:1025893" CDS 2099805..2100872 /gene="hisB" /locus_tag="SF2084" /codon_start=1 /transl_table=11 /product="imidazole glycerol-phosphate dehydratase/histidinol phosphatase" /protein_id="NP_707917.2" /db_xref="GeneID:1025893" /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPGVIPELLKLQ KAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECD CRKPKVKLVEGYLAEQAMDRANSYVIGDRATDIQLAENMGINGLRYDRETLNWPMIGE QLTKRDRYAHVVRNTKETQIDVQVWLDREGGSKINTGVGFFDHMLDQIATHGGFRMEI NVKGDLYIDDHHTVEDTGLALGEALKIALGDKRGICRFGFVLPMDECLARCALDISGR PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG RTLRQAIRVEGDTLPSSKGVL" misc_feature 2099808..2100869 /gene="hisB" /locus_tag="SF2084" /note="bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB; Region: PRK05446" /db_xref="CDD:235471" gene 2100872..2101462 /gene="hisH" /locus_tag="SF2085" /db_xref="GeneID:1025298" CDS 2100872..2101462 /gene="hisH" /locus_tag="SF2085" /note="Code: E; COG: COG0118" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase subunit HisH" /protein_id="NP_707918.1" /db_xref="GeneID:1025298" /translation="MNVVILDTGCANLNSVKSAIARHGYEPKVSRDPDIVLLADKLFL PGVGTAQAAMDQVRERELFDLIKACTQPVLGICLGMQLLGRRSEESNGVDLLGIIDED VPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNYG EPFTAAVQKDNFYGVQFHPERSGAAGAKLLKNFLEM" misc_feature 2100872..2101459 /gene="hisH" /locus_tag="SF2085" /note="imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13170" /db_xref="CDD:183877" misc_feature order(2100992..2101015,2101094..2101108,2101403..2101405, 2101409..2101411) /gene="hisH" /locus_tag="SF2085" /note="putative active site [active]" /db_xref="CDD:153219" misc_feature 2100992..2101015 /gene="hisH" /locus_tag="SF2085" /note="oxyanion strand [active]" /db_xref="CDD:153219" misc_feature order(2101100..2101102,2101403..2101405,2101409..2101411) /gene="hisH" /locus_tag="SF2085" /note="catalytic triad [active]" /db_xref="CDD:153219" gene 2101462..2102199 /gene="hisA" /locus_tag="SF2086" /db_xref="GeneID:1025300" CDS 2101462..2102199 /gene="hisA" /locus_tag="SF2086" /note="Code: E; COG: COG0106" /codon_start=1 /transl_table=11 /product="1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase" /protein_id="NP_707919.2" /db_xref="GeneID:1025300" /translation="MIIPALDLIDGTVVRLHQGDYGKQRDYGNDPLPRLQDYAAQGAE VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRSEEDVAALLEAGVARVVVG STAVKSPDVVKGWFERFGADALVLALDVRIDEQGNKQVAVSGWQENSGVSLEQLVETY LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQVAFQSSGGIGDINDVAALRGTG VRGVIVGRALLEGKFTVKEAIACWQNA" misc_feature 2101462..2102175 /gene="hisA" /locus_tag="SF2086" /note="1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated; Region: PRK00748" /db_xref="CDD:179108" misc_feature order(2101480..2101482,2101600..2101602,2101846..2101848) /gene="hisA" /locus_tag="SF2086" /note="catalytic residues [active]" /db_xref="CDD:240083" gene 2102181..2102957 /gene="hisF" /locus_tag="SF2087" /db_xref="GeneID:1025286" CDS 2102181..2102957 /gene="hisF" /locus_tag="SF2087" /note="Code: E; COG: COG0107" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase subunit HisF" /protein_id="NP_707920.1" /db_xref="GeneID:1025286" /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYAEEGA DELVFYDITASSDGRVVDKSWVSRVAEVIDIPFCVAGGIKSLEDAAKILSFGADKISI NSPALADPTLITRLADRFGVQCIVVGIDTWYDAETGKYHVNQYTGDESRTRVTQWETL DWVEEVQKRGAGEIVLNMMNQDGVCNGYDLKQLKKVREVCHVPLIASGGAGTMEHFLE AFRDADVDGALAASVFHKQIINIGELKAYLATQGVEIRIC" misc_feature 2102181..2102948 /gene="hisF" /locus_tag="SF2087" /note="imidazoleglycerol phosphate synthase, cyclase subunit; Region: hisF; TIGR00735" /db_xref="CDD:273241" misc_feature order(2102235..2102237,2102328..2102330,2102424..2102426, 2102487..2102492,2102562..2102564,2102568..2102570, 2102628..2102630,2102709..2102711,2102724..2102729, 2102799..2102807,2102871..2102876) /gene="hisF" /locus_tag="SF2087" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:240082" misc_feature order(2102298..2102300,2102313..2102315,2102379..2102381, 2102391..2102393,2102400..2102402,2102406..2102408, 2102463..2102465,2102472..2102477,2102547..2102549, 2102697..2102699,2102781..2102783,2102856..2102858) /gene="hisF" /locus_tag="SF2087" /note="glutamase interaction surface [polypeptide binding]; other site" /db_xref="CDD:240082" gene 2102951..2103562 /gene="hisI" /locus_tag="SF2088" /db_xref="GeneID:1025295" CDS 2102951..2103562 /gene="hisI" /locus_tag="SF2088" /codon_start=1 /transl_table=11 /product="bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase" /protein_id="NP_707921.1" /db_xref="GeneID:1025295" /translation="MLTEQQRRELDWEKTDGLMPVIVQHAVSGEVLMLGYMNPEALDK TIESGKVTFFSRTKQRLWIKGETSGNFLNVVSIAPDCDNDTLLVLANPIGPTCHKGTS SCFGNTAHQWLFLYQLEQLLAERKYADPETSYTAKLYASGTKRIAQKVGEEGVETALA ATVHDRFELTNEASDLMYHLLVLLQDQDLDLTTVIENLHKRHQ" misc_feature 2102957..2103556 /gene="hisI" /locus_tag="SF2088" /note="bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE; Region: PRK02759" /db_xref="CDD:235067" gene complement(2103748..2104761) /gene="wzzB" /locus_tag="SF2089" /db_xref="GeneID:1025284" CDS complement(2103748..2104761) /gene="wzzB" /locus_tag="SF2089" /codon_start=1 /transl_table=11 /product="chain length determinant protein WzzB" /protein_id="NP_707922.1" /db_xref="GeneID:1025284" /translation="MRTWKFPSVRVMMRVENNNVSGQNHDPEQIDLIDLLVQLWRGKM TIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSD LQETLIGRFSSAFSALAETLDNQEEPEKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKL AQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQY ANQAQVTKPQVQQTEDVTQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDI EKLKFDDLDIHAYRYVMKPTLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY NAK" misc_feature complement(2103751..2104725) /gene="wzzB" /locus_tag="SF2089" /note="chain length determinant protein WzzB; Provisional; Region: PRK15471" /db_xref="CDD:185368" gene complement(2104871..2105991) /gene="ugd" /locus_tag="SF2090" /pseudo /db_xref="GeneID:1026613" misc_feature complement(2104871..2105991) /gene="ugd" /locus_tag="SF2090" /note="Similar to Escherichia coli K12 UDP-glucose 6-dehydrogenase gi: 1788340 (389 aa). BLAST with identity of 96% in 373 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2106241..2107647) /gene="gnd" /locus_tag="SF2091" /db_xref="GeneID:1025304" CDS complement(2106241..2107647) /gene="gnd" /locus_tag="SF2091" /note="Code: G; COG: COG0362" /codon_start=1 /transl_table=11 /product="6-phosphogluconate dehydrogenase" /protein_id="NP_707923.1" /db_xref="GeneID:1025304" /translation="MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIA ENPGKKLAPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGN TFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKEAYELVAPILTKIA AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELAQT FTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP LSLITESVFARYISSLKDQRVAASKVLSGPQAQSAGDKAEFIEKVRSALYLGKIVSYA QGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENPQIANLLLAPY FKQIADDYQQALRDVVAYAVQNGIPVPTFAAAVAYYDSYRAAVLPANLIQAQRDYFGA HTYKRIDKEGVFHTEWLD" misc_feature complement(2106250..2107644) /gene="gnd" /locus_tag="SF2091" /note="6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]; Region: Gnd; COG0362" /db_xref="CDD:440131" misc_feature complement(2108112..2109363) /note="potential frameshift: common BLAST hit: gi|313200833|ref|YP_004039491.1| dolichyl-phosphate-mannose-protein mannosyltransferase" gene complement(2108112..2108663) /locus_tag="SF2092" /db_xref="GeneID:1025582" CDS complement(2108112..2108663) /locus_tag="SF2092" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707924.1" /db_xref="GeneID:1025582" /translation="MIAKKRNIQTFLIFSLATILGGIYWYVRSFWISGDPFSPAGGNI FGHYLWNEIDLQVQTAEQARHGISPATLDLQQAINKVGSDVVFYAILSVFTLRNNKIL WVFFSIVLTYVLFWFSVTQGDRYLSPIYPLSVLQVAISIASLIKDINITNYKLGRYFI LVCIIFFRGDRCILNSNIFILNT" gene complement(2108764..2109363) /locus_tag="SF2093" /db_xref="GeneID:1025863" CDS complement(2108764..2109363) /locus_tag="SF2093" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707925.1" /db_xref="GeneID:1025863" /translation="MSLNILIIYFLGMVGQFNKIAIFLIFTVCWVLSIIKRQQFRWLA INNIEFSTLFVILFLVLIFVVTLLSSLRAPGDWDDTMYHLPLARSLVEHHAIVVEQYL RFPLFPQNADLLMALGLQLGDVRLAQFLANICFFVIACGLVGCSWEITKTYYPGIIAT ILLFTINPLKDHLGYAYIDLTLSLFCCSQYSYIYSLRKQ" gene complement(2109580..2110518) /locus_tag="SF2094" /pseudogene="unknown" /db_xref="GeneID:1026357" gene complement(2110581..2110955) /gene="rfbI" /locus_tag="SF2096" /db_xref="GeneID:1025291" CDS complement(2110581..2110955) /gene="rfbI" /locus_tag="SF2096" /codon_start=1 /transl_table=11 /product="glycosyl translocase" /protein_id="NP_707928.1" /db_xref="GeneID:1025291" /translation="MLKIGKLLTSSFFSYFLIGIVNTALHWGVFYACYNNLAFGQGRS NIVGFICAATFSFFANARCSFKVSATKARYFIFIFFMGAMSYLFGVLFDLLALSPIFT LFTFSLFSLVLGYCASKYFIFR" misc_feature complement(2110584..2110940) /gene="rfbI" /locus_tag="SF2096" /note="Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) [Lipid transport and metabolism]; Region: GtrA; COG2246" /db_xref="CDD:441847" gene complement(2110959..2112107) /gene="rfc" /locus_tag="SF2097" /db_xref="GeneID:1025297" CDS complement(2110959..2112107) /gene="rfc" /locus_tag="SF2097" /codon_start=1 /transl_table=11 /product="O-antigen polymerase" /protein_id="NP_707929.1" /db_xref="GeneID:1025297" /translation="MNNINKIFITFLCIELIIGGGGRLLEPLGIFPLRYLLFVFSFIL LIFNLVTFNFSITQKCVSLFIWLLLFPFYGFFVGLLAGNKINDILFDVQPYLFMLSLI YLFTLRYTLKVFSCEIFIKIVNAFALYGSLLYISYIILLNFGLLNFNLIYEHLSLTSE FFFRPDGAFFSKSFYFFGVGAIISFVDKKYLKCLIIVLAILLTESRGVLLFTTLSLLL ASFKLHKLYLNTIIIILGSVLFIIMLYMVGSRSEDSDSVRFNDLYFYYKNVDLATFLF GRGFGSFILDRLRIEIVPLEILQKTGVIGVFISLVPMLLIFLKGYFLNSTKTSLMMSL ILFFSITVSITNPFLFTPMGIFIIGVVVLWVFSIENIQISNNLTSGAK" gene complement(2112127..2112996) /gene="rfbG" /locus_tag="SF2098" /db_xref="GeneID:1025285" CDS complement(2112127..2112996) /gene="rfbG" /locus_tag="SF2098" /codon_start=1 /transl_table=11 /product="dTDP-rhamnosyl transferase" /protein_id="NP_707930.1" /db_xref="GeneID:1025285" /translation="MATYNGECWIEEQLKSIIEQKDVDISIFISDDLSTDNTLNICEE FQLSYPSIINILPSVNKFGGAGKNFYRLIKDVDLENYDYICFSDQDDIWYKDKIKNAI DCLVFNNANCYSSNVIAYYPSGRKNLVDKAQSQTQFDYFFEAAGPGCTYVIKKETLIE FKKFIINNKNAAQDICLHDWFLYSFARTRNYSWYIDRKPTMLYRQHENNQVGANISFK AKYKRLGLVRNKWYRKEVTKIANALADDSFVNNQLGKGYIGNLILALSFWKLRRKKAD KIYILLMLILNIF" misc_feature complement(2112355..2112996) /gene="rfbG" /locus_tag="SF2098" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:472172" misc_feature complement(order(2112727..2112729,2112733..2112735, 2112907..2112909,2112985..2112987,2112991..2112993)) /gene="rfbG" /locus_tag="SF2098" /note="active site" /db_xref="CDD:133039" gene complement(2113025..2113915) /gene="rfbF" /locus_tag="SF2099" /db_xref="GeneID:1026771" CDS complement(2113025..2113915) /gene="rfbF" /locus_tag="SF2099" /codon_start=1 /transl_table=11 /product="dTDP-rhamnosyl transferase" /protein_id="NP_707931.1" /db_xref="GeneID:1026771" /translation="MNSNIYAVIVTYNPELKNLNALITELKEQNCYVVVVDNRTNFTL KDKLADIEKVHLICLGRNEGIAKAQNIGIRYSLEKGAEKIIFFDQDSRIRNEFIKKLS CYMDNENAKIAGPVFIDRDKSHYYPICNIKKNGLREKIHVTEGQTPFKSSVTISSGTM VSKEVFEIVGMMDEELFIDYVDTEWCLRCLNYGILVHIIPDIKMVHAIGDKSVKICGI NIPIHSPVRRYYRVRNAFLLLRKNHVPLLLSIREVVFSLIHTTLIIATQKNKIEYMKK HILATLDGIRGITGGGRYNA" misc_feature complement(2113067..2113888) /gene="rfbF" /locus_tag="SF2099" /note="L-rhamnosyltransferase; Region: rhamnosyltran; TIGR01556" /db_xref="CDD:130619" misc_feature complement(order(2113646..2113648,2113880..2113882, 2113886..2113888)) /gene="rfbF" /locus_tag="SF2099" /note="Ligand binding site [active]" /db_xref="CDD:133017" gene complement(2113945..2115201) /gene="rfbE" /locus_tag="SF2100" /db_xref="GeneID:1026640" CDS complement(2113945..2115201) /gene="rfbE" /locus_tag="SF2100" /codon_start=1 /transl_table=11 /product="polysaccharide biosynthesis protein" /protein_id="NP_707932.1" /db_xref="GeneID:1026640" /translation="MSIIKNSVWNLFGYAIPTLIAIPSLGFLARGLGPEGFGVYTIAI ALVGYAGIFDVGLTRSVIREIAIHRDNHHERTKVISTSTSFLVLFSCFGAFLLLIFSD GIVNYLKISGVEHSDIQLAFKLLAICIPLFILNQLWSAILEGDEKFGIVNIQKSISSS CIAGIPAIFVFYSATLSAAVAGLIFARVISILVSAYYVRNDIKISGVHFCYKTFKRLF FFGGWMTVSNIISPVMVYFDRFIVSNIMGADKVAFYSAPAEVILKLGIIPAAIGRAVF PRLSNIKDFKEFKRNVNKSLLLMFLICLPVIIIGLLYSGLVLKIWFGENYQINSFNIL NVLLIGFFFNALAMIPFSAIQALGKSKITALIHCAELVPYLALLYFMVEKYGLLGAAI SWSIRVILDALLLQWLYTRMCSVYEN" misc_feature complement(2113975..2115195) /gene="rfbE" /locus_tag="SF2100" /note="Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins; Region: MATE_Wzx_like; cd13128" /db_xref="CDD:240533" gene complement(2115217..2115762) /gene="rfbC" /locus_tag="SF2101" /db_xref="GeneID:1026775" CDS complement(2115217..2115762) /gene="rfbC" /locus_tag="SF2101" /note="Code: M; COG: COG1898" /codon_start=1 /transl_table=11 /product="dTDP-6-deoxy-L-mannose-dehydrogenase" /protein_id="NP_707933.1" /db_xref="GeneID:1026775" /translation="MNVIKTEIPDVLIFEPKVFGDERGFFMESFNQKVFEEAVGRKVE FVQDNHSKSTKGVLRGLHYQLEPYAQGKLVRCVVGEVFDVAVDIRKSSPTFGKWVGVN LSAENKRQLWIPEGFAHGFCVLSDEAEFVYKTNNFYSKMQERGILWSDKSINIEWPVQ NPLLSDKDINGQKFVDADYFI" misc_feature complement(2115232..2115762) /gene="rfbC" /locus_tag="SF2101" /note="dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme [Cell wall/membrane/envelope biogenesis]; Region: RfbC; COG1898" /db_xref="CDD:441502" gene complement(2115767..2116645) /gene="rfbA" /locus_tag="SF2102" /db_xref="GeneID:1025289" CDS complement(2115767..2116645) /gene="rfbA" /locus_tag="SF2102" /note="Code: M; COG: COG1209" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate thymidylyltransferase" /protein_id="NP_707934.1" /db_xref="GeneID:1025289" /translation="MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL MLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGG DDCALVLGDNIFYGHDLPKLMDTAVNRESGATVFAYHVNDPERYGVVEFDDNGTAISL EEKPQEPKSNYAVTGLYFYDNDVVEMAKNLKPSARGELEITDINRIYMDQGRLSVAMM GRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAHRKGFIDAEQVKVLAEPL KKNAYGQYLLKMIKGY" misc_feature complement(2115776..2116633) /gene="rfbA" /locus_tag="SF2102" /note="glucose-1-phosphate thymidylyltransferase, short form; Region: rmlA; TIGR01207" /db_xref="CDD:130274" misc_feature complement(order(2116043..2116045,2116127..2116129, 2116157..2116162,2116205..2116207,2116313..2116315, 2116379..2116390,2116397..2116399,2116610..2116615, 2116619..2116621)) /gene="rfbA" /locus_tag="SF2102" /note="substrate binding site [active]" /db_xref="CDD:133019" misc_feature complement(order(2115917..2115922,2115929..2115937, 2115944..2115946,2115953..2115958,2115968..2115976, 2116208..2116213,2116223..2116234,2116298..2116303, 2116457..2116459,2116532..2116534,2116541..2116552, 2116556..2116564,2116574..2116579,2116586..2116594, 2116601..2116603)) /gene="rfbA" /locus_tag="SF2102" /note="tetramer interface [active]" /db_xref="CDD:133019" gene complement(2116704..2117603) /gene="rfbD" /locus_tag="SF2103" /db_xref="GeneID:1025316" CDS complement(2116704..2117603) /gene="rfbD" /locus_tag="SF2103" /note="Code: M; COG: COG1091" /codon_start=1 /transl_table=11 /product="dTDP-4-dehydrorhamnose reductase" /protein_id="NP_707935.1" /db_xref="GeneID:1025316" /translation="MNILLFGKTGQVGWELQRALAPLGNLIALDVHSTDYCGDFSNPE GVAETVKKIRPDVIVNAAAHTAVDKAESEPNFAQLLNATCVEAIAKAANEVGAWVIHY STDYVFPGNGDTPWLETDATAPLNVYGETKLAGEKALQEHCAKHLIFRTSWVYAGKGN NFAKTMLRLAKEREELAVINDQFGAPTGAELLADCTAHAIRVAANKPEVAGLYHLVAG GTTTWHDYAALVFEEARRAGINLALNKLNAVPTTAYPTPARRPHNSRLNTEKFQQNFA LVLPDWQVGVKRMLNELFTTTAI" misc_feature complement(2116707..2117603) /gene="rfbD" /locus_tag="SF2103" /note="dTDP-4-dehydrorhamnose reductase; Provisional; Region: PRK09987" /db_xref="CDD:182184" misc_feature complement(order(2117142..2117153,2117208..2117210, 2117220..2117222,2117292..2117300,2117364..2117366, 2117409..2117411,2117415..2117423,2117481..2117492, 2117511..2117516,2117568..2117579,2117583..2117585)) /gene="rfbD" /locus_tag="SF2103" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187564" misc_feature complement(order(2117208..2117210,2117220..2117222, 2117292..2117294,2117361..2117363)) /gene="rfbD" /locus_tag="SF2103" /note="active site" /db_xref="CDD:187564" misc_feature complement(order(2117052..2117054,2117070..2117072, 2117106..2117108,2117145..2117147,2117220..2117222, 2117292..2117294)) /gene="rfbD" /locus_tag="SF2103" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187564" gene complement(2117603..2118688) /gene="rfbB" /locus_tag="SF2104" /db_xref="GeneID:1025931" CDS complement(2117603..2118688) /gene="rfbB" /locus_tag="SF2104" /note="Code: M; COG: COG1088" /codon_start=1 /transl_table=11 /product="dTDP-glucose 4,6 dehydratase" /protein_id="NP_707936.1" /db_xref="GeneID:1025931" /translation="MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLA DVSDSERYAFEHADICDAVAMSRIFAQHQPDAVMHLAAESHVDRSITGPAAFIETNIV GTYVLLEAARNYWSALNDEKKKSFRFHHISTDEVYGDLPHPDEANNNEALPLFTETTA YAPSSPYSASKASSDHLVRAWKRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEG KALPIYGKGDQIRDWLYVEDHARALYTVVTEGKAGETYNIGGHNEKKNIDVVLTICDL LDEIVPKEKSYREQITYVADRPGHDRRYAIDADKISRELGWKPQETFESGIRKTVEWY LANTNWVENVKSGTYQSWIEQNYEGRQ" misc_feature complement(2117633..2118688) /gene="rfbB" /locus_tag="SF2104" /note="dTDP-glucose 4,6 dehydratase; Provisional; Region: PRK10084" /db_xref="CDD:236649" misc_feature complement(order(2118098..2118109,2118176..2118178, 2118188..2118190,2118290..2118298,2118392..2118394, 2118437..2118439,2118443..2118451,2118512..2118520, 2118575..2118580,2118584..2118595,2118653..2118664, 2118668..2118670)) /gene="rfbB" /locus_tag="SF2104" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187557" misc_feature complement(order(2117777..2117779,2117789..2117791, 2117798..2117800,2117891..2117893,2117996..2117998, 2118002..2118004,2118017..2118025,2118056..2118061, 2118068..2118076,2118101..2118109,2118188..2118190, 2118284..2118292,2118431..2118439)) /gene="rfbB" /locus_tag="SF2104" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187557" misc_feature complement(order(2117786..2117788,2118134..2118142, 2118146..2118151,2118158..2118163,2118170..2118175, 2118182..2118184,2118191..2118202,2118206..2118211, 2118215..2118217,2118272..2118274,2118353..2118355, 2118362..2118364,2118374..2118376,2118383..2118388, 2118398..2118400,2118407..2118412,2118419..2118421, 2118425..2118427)) /gene="rfbB" /locus_tag="SF2104" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187557" misc_feature complement(order(2118176..2118178,2118188..2118190, 2118290..2118292,2118389..2118391)) /gene="rfbB" /locus_tag="SF2104" /note="active site" /db_xref="CDD:187557" gene complement(2119061..2119954) /gene="galF" /locus_tag="SF2105" /db_xref="GeneID:1025313" CDS complement(2119061..2119954) /gene="galF" /locus_tag="SF2105" /note="Code: M; COG: COG1210" /codon_start=1 /transl_table=11 /product="GalU regulator GalF" /protein_id="NP_707937.2" /db_xref="GeneID:1025313" /translation="MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI VAAGIKEILLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVIIMNV RQGEPLGLGHSILCARPAIGDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNETGRS QVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDIMAVGRYVLS ADIWPELERTQPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY GLRNLKEGAKFRKGIEKLLSE" misc_feature complement(2119064..2119954) /gene="galF" /locus_tag="SF2105" /note="UTP--glucose-1-phosphate uridylyltransferase GalF; Region: PRK10122" /db_xref="CDD:182252" gene complement(2120129..2121523) /gene="wcaM" /locus_tag="SF2106" /db_xref="GeneID:1025865" CDS complement(2120129..2121523) /gene="wcaM" /locus_tag="SF2106" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis protein" /protein_id="NP_707938.1" /db_xref="GeneID:1025865" /translation="MPFKTLSRRTFLTASSALAFLHTPFARALPARQSVNINDYNPHD WIASFKQAFSEGQTVVVPAGFVCDNINTGIFIPPGKTLHILGSLRGNGRGRFVLQDGS QVTGGEGGGMHNITLDVRGSDCTIKGLAMSGFGPVMQIYIGGKNKRVMRNLTIDNLTV SHANYAILRQGFHNQIIGANITNCKFSDLQGDAIEWNVAINDSDILISDHVIERINCT NGKINWGIGIGLAGSTYDNNYPEDQAVKNFVVANITGSDCRQLIHVENGKHFVIRNIN ARNITPDFSKKAGIDNATVAIYGCDNFVIDNIEMINSAGMLIGYGVIKGKYLSIPQNF RVNNIQLDNTHLAYKLRGIQISAGNAVSFVSLTNIEMKRASLELHNKPQHLFMRNINV MQESSVGPALSMNFDMRKDVRGVFMAKKETLLSLANVHAVNERGQSSVDIDRINHHIV NVEKINFRLPERRE" misc_feature complement(2120132..2121523) /gene="wcaM" /locus_tag="SF2106" /note="putative colanic acid biosynthesis protein; Provisional; Region: wcaM; PRK10123" /db_xref="CDD:182253" gene complement(2121534..2122754) /gene="wcaL" /locus_tag="SF2107" /db_xref="GeneID:1027353" CDS complement(2121534..2122754) /gene="wcaL" /locus_tag="SF2107" /note="Code: M; COG: COG0438" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis glycosyltransferase WcaL" /protein_id="NP_707939.2" /db_xref="GeneID:1027353" /translation="MKVGFFLLKFPLSSETFVLNQITAFIDMGFEVEIVALQKGDTEN THAAWTKYNLVARTRWLQDEPAGKVAKLRHRASQTLRGIHRKNTWHALNLKRYGAESR NLILSAICGQVATPFRADVFIAHFGPAGVTAAKLRELGIIRGKIATIFHGIDISSREV LNHYTPEYQQLFRRGDLMLPISDLWAGRLQKMGCPREKIAVSRMGVDMTRFSPRPVKA PATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIGLWERRLRTIIEQYQ LEDVVEMPGFKPSHEVKEMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVST LHSGIPELVEADKSGWLLPENDARALAQRLAAFSQLDTDELAPVVKRACEKVEHDFNQ QVINRELASLLQAL" misc_feature complement(2121537..2122754) /gene="wcaL" /locus_tag="SF2107" /note="colanic acid biosynthesis glycosyltransferase WcaL; Region: wcaL; TIGR04005" /db_xref="CDD:188520" gene complement(2122751..2124031) /gene="wcaK" /locus_tag="SF2108" /db_xref="GeneID:1025515" CDS complement(2122751..2124031) /gene="wcaK" /locus_tag="SF2108" /note="Code: S; COG: COG2327" /codon_start=1 /transl_table=11 /product="colanic acid biosynthesis protein" /protein_id="NP_707940.1" /db_xref="GeneID:1025515" /translation="MKLLILGNHTCGNRGDSAILRGLLDAINILNPHTEVDVMSRYPV SSSWLLNRPVMGDPLFLQMTQHNSAAGVVGRIKKVLRRRYQHQVLLSRVTDTGKLRNI AIAQGFTDFVRLLSGYDAIIQVGGSFFVDLYGVPQFEHALCTFMAKKPLFMIGHSVGP FQDEQFNQLANYVFGHCDALILRESVSLDLMKRRNITTAKVEHGVDTAWLVDHHTEDF TASYAVQHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRILDEGYQV IALSTCTGIDSYNKDDRMVALNLRQHISDPARYHVVMDELNDLEMGKILGACELTVGT RLHSAIISMNFATPAIAINYEHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQ LPVLNARFNEAVSRERQTGMQMVQSVLERIGEVK" misc_feature complement(2122754..2124031) /gene="wcaK" /locus_tag="SF2108" /note="colanic acid biosynthesis pyruvyl transferase WcaK; Region: wcaK; TIGR04006" /db_xref="CDD:188521" gene complement(2124211..2125689) /gene="wzxC" /locus_tag="SF2109" /db_xref="GeneID:1025308" CDS complement(2124211..2125689) /gene="wzxC" /locus_tag="SF2109" /note="Code: R; COG: COG2244" /codon_start=1 /transl_table=11 /product="colanic acid exporter" /protein_id="NP_707941.1" /db_xref="GeneID:1025308" /translation="MSLREKTISGAKWSAIATVIIIGLGLVQMTVLARIIDNHQFGLL TVSLVIIALADTLSDFGIANSIIQRKEISHLELTTLYWLNVGLGLVVCVAVFLLSDVI GDVLNNPDLAPLIKTLSLAFVVIPHGQQFRALMQKELEFNKIGMIETSAVLAGFTFTV VSAHFWPLAMTAILGYLVNSAVRTLLFGYFGRKIYCPGLHFSLASVAPNLRFGAWLTA DSIINYLNTNLSTLVLARILGAGVAGGYNLAYNVAVVPPMKLNPIITRVLFPAFAKIQ DDTEKLRVNFYKLLSIVGIINFPALLGLMVVSNNFVPLVFGEKWNSIIPVLQLLCIVG LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAIVIGGQMAGAIGVTLGFLLVQI INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTLVVSYALGIVLKGQLALGMLLA VQIAAGVLAFVVMIVLSRHPLVVEVKRQFCRSEKMKMLLRAG" misc_feature complement(2124214..2125689) /gene="wzxC" /locus_tag="SF2109" /note="MOP flippase family protein; Region: PRK10459" /db_xref="CDD:236697" gene complement(2125691..2127085) /gene="wcaJ" /locus_tag="SF2110" /db_xref="GeneID:1026880" CDS complement(2125691..2127085) /gene="wcaJ" /locus_tag="SF2110" /note="Code: M; COG: COG2148" /codon_start=1 /transl_table=11 /product="UDP-glucose lipid carrier transferase" /protein_id="NP_707942.1" /db_xref="GeneID:1026880" /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFAGLWLVCEVSGLSF LYMHLLVALITLVVFQMLGGITDFYRSWRGVRAATEFALLLPNWTLSVIFSAGLVAFN NDFDTQLKIWLAWYGLTSIGLVVCRSCIRIGAGWLRNHGYNKRMVAVAGDLAAGQMLM ESFRNQPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMQMCDGA RVKKLVHQLADTTCSVLLIPDVFTFNILHSRLEEMNGVPVVPLYDTPLSGVNRLLKRA EDIVLATLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVME NDKVVTQATQNDPRVTKVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYR QLIEGYMLRHKVKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSVWFDIKIV FLTVFKGFVNKAAY" misc_feature complement(2125694..2127082) /gene="wcaJ" /locus_tag="SF2110" /note="putative UDP-glucose lipid carrier transferase; Provisional; Region: PRK10124" /db_xref="CDD:182254" gene complement(2127140..2128510) /gene="cpsG" /locus_tag="SF2111" /db_xref="GeneID:1025871" CDS complement(2127140..2128510) /gene="cpsG" /locus_tag="SF2111" /note="Code: G; COG: COG1109" /codon_start=1 /transl_table=11 /product="phosphomannomutase" /protein_id="NP_707943.2" /db_xref="GeneID:1025871" /translation="MKKLTCFKAYDIRGKLGEELNEDIAWRIGRAYGEFLKPKTIVLG GDVRLTSETLKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM DYNGMKLVREGARTISGDTGLRDVQRLAEANDFPPVDETKRGRYQQINLRDAYVDHLF GYINVKNLTPLKLVINSGNGAAGPVVDAIEARFKALGAPVELIKVHNTPDGNFPNGIP NPLLPECRDDTRNAVIKHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE KNPGAKIIHDPRLSWNTIDVVTAAGGTPVMSKTGHAFIKERMRKEDAIYGGEMSAHHY FRDFAYCDSGMIPWLLVAELVCLKGKTLGELVRDRMAAFPASGEINSKLAQPVEAINR VEQHFSREALAVDRSDGISMTFADWRFNLRTSNTEPVVRLNVESRGDVPLMEARTRTL LTLLNE" misc_feature complement(2127143..2128510) /gene="cpsG" /locus_tag="SF2111" /note="phosphomannomutase; Region: PRK15414" /db_xref="CDD:185312" misc_feature complement(order(2127233..2127241,2127245..2127247, 2127515..2127517,2127521..2127523,2127527..2127529, 2127578..2127586,2127647..2127649,2127761..2127766, 2127770..2127772,2127776..2127778,2128187..2128189, 2128211..2128219,2128472..2128474,2128481..2128483, 2128487..2128489)) /gene="cpsG" /locus_tag="SF2111" /note="active site" /db_xref="CDD:100091" misc_feature complement(order(2127233..2127241,2127245..2127247, 2127515..2127517,2127521..2127523,2127527..2127529, 2127578..2127580,2127584..2127586,2127647..2127649, 2127761..2127763,2128217..2128219,2128472..2128474, 2128481..2128483)) /gene="cpsG" /locus_tag="SF2111" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100091" misc_feature complement(order(2127764..2127766,2127770..2127772, 2127776..2127778,2128217..2128219)) /gene="cpsG" /locus_tag="SF2111" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100091" gene complement(2128703..2130139) /gene="cpsB" /locus_tag="SF2112" /db_xref="GeneID:1025301" CDS complement(2128703..2130139) /gene="cpsB" /locus_tag="SF2112" /note="Code: M; COG: COG0836" /codon_start=1 /transl_table=11 /product="mannose-1-phosphate guanylyltransferase" /protein_id="NP_707944.1" /db_xref="GeneID:1025301" /translation="MAQSKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQTT ICRLNGVECESPVVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAALAA KRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIVPDLPETGYGY IRRGEVSVGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELK KYRPDILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMEPTADAVVVPMDAG WSDVGSWSSLWEISAHTAEGNVCHGDVINHKTENSYVYAESGLVTTVGVKDLVVVQTK DAVLIADRNAVQDVKKVVEQIKADGRHEHRVHREVYRPWGKYDSIDAGDRYQVKRITV KPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGDIKLLGENESIYIPLGATHCLENPGKI PLDLIEVRSGSYLEEDDVVRFADRYGRV" misc_feature complement(2128706..2130139) /gene="cpsB" /locus_tag="SF2112" /note="mannose-1-phosphate guanyltransferase; Provisional; Region: cpsB; PRK15460" /db_xref="CDD:185357" misc_feature complement(order(2129783..2129785,2130101..2130103, 2130107..2130109)) /gene="cpsB" /locus_tag="SF2112" /note="Substrate binding site [active]" /db_xref="CDD:133003" gene complement(2130142..2131365) /gene="wcaI" /locus_tag="SF2113" /db_xref="GeneID:1025903" CDS complement(2130142..2131365) /gene="wcaI" /locus_tag="SF2113" /note="Code: M; COG: COG0438" /codon_start=1 /transl_table=11 /product="glycosyl transferase" /protein_id="NP_707945.1" /db_xref="GeneID:1025903" /translation="MKILVYGINYSPELTGIGKYTGEMVEWLAAQGHEVRVITAPPYY PQWQVGENYSAWRYKREEGAATVWRCPLYVPKQPSTLKRLLHLGSFAVSSFFPLMAQR RWKPDRIIGVVPTLFCTPGMRLLAKLSGARTVLHIQDYEVDAMLGLGLAGKGKGGKVA QLATAFERSGLHNVDNVSTISRSMMNKAIEKGVAADNVIFFPNWSEIARFQHVADADV DALRNQLGLPDNKKIILYSGNIGEKQGLENVIEAADLLRDEPLIFAIVGQGGGKARLE KMAQQRGLRNMQFFPLQSYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN AVITAEAHTELGQLCETFPGIAVCVEPESVEALVAGIRQALLLPKHNTVAREYAERTL DKENVLRQFINDIRG" misc_feature complement(2130145..2131365) /gene="wcaI" /locus_tag="SF2113" /note="colanic acid biosynthesis glycosyl transferase WcaI; Region: wcaI; TIGR04007" /db_xref="CDD:188522" gene complement(2131362..2131841) /gene="wcaH" /locus_tag="SF2114" /db_xref="GeneID:1025299" CDS complement(2131362..2131841) /gene="wcaH" /locus_tag="SF2114" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="GDP-mannose mannosyl hydrolase" /protein_id="NP_707946.2" /db_xref="GeneID:1025299" /translation="MFLRQEDFATVVRSTPLVSLDFIVENSRGEFLLGKRTNRPAQGY WFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGTDFTTHY VVLGFRFRVAEEELLLPDEQHDDYRWLTPDALLASNDVHANSRAYFLAEKRAGVPGL" misc_feature complement(2131365..2131841) /gene="wcaH" /locus_tag="SF2114" /note="GDP-mannose mannosyl hydrolase; Region: PRK15434" /db_xref="CDD:237966" gene complement(2131841..2132809) /gene="wcaG" /locus_tag="SF2115" /db_xref="GeneID:1025307" CDS complement(2131841..2132809) /gene="wcaG" /locus_tag="SF2115" /note="Code: MG; COG: COG0451" /codon_start=1 /transl_table=11 /product="nucleotide di-P-sugar epimerase or dehydratase" /protein_id="NP_707947.1" /db_xref="GeneID:1025307" /translation="MSKQRIFIAGHCGMVGSAIKRQLEQRGDVELVLRTRDELNLLDS RAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKL MFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRT VMPTNLYGPHDNFHPSNSHVIPALLRRFHEATAQNAPDVVVWGSGTPMREFLHVDDMA AASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKVVGYKGRVVFDASK PDGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQDRFRGE" misc_feature complement(2131871..2132797) /gene="wcaG" /locus_tag="SF2115" /note="GDP-fucose synthetase, extended (e) SDRs; Region: GDP_FS_SDR_e; cd05239" /db_xref="CDD:187550" misc_feature complement(order(2132312..2132314,2132318..2132323, 2132390..2132392,2132402..2132404,2132489..2132497, 2132552..2132554,2132612..2132614,2132618..2132626, 2132684..2132695,2132702..2132704,2132765..2132776, 2132780..2132782)) /gene="wcaG" /locus_tag="SF2115" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187550" misc_feature complement(order(2132390..2132392,2132402..2132404, 2132489..2132491,2132561..2132563)) /gene="wcaG" /locus_tag="SF2115" /note="active site" /db_xref="CDD:187550" misc_feature complement(order(2132183..2132185,2132207..2132209, 2132258..2132260,2132315..2132317,2132402..2132404, 2132489..2132491)) /gene="wcaG" /locus_tag="SF2115" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187550" gene complement(2132812..2133933) /gene="gmd" /locus_tag="SF2116" /db_xref="GeneID:1026781" CDS complement(2132812..2133933) /gene="gmd" /locus_tag="SF2116" /note="Code: M; COG: COG1089" /codon_start=1 /transl_table=11 /product="GDP-D-mannose dehydratase" /protein_id="NP_707948.1" /db_xref="GeneID:1026781" /translation="MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV DHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYT ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA KLYAYWITVNYRESYGMYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL GNMDSLRDWGHAKDYVKMQWMMLQQEQPEDFVIATGVQYSVRQFVEMAAAQLGIKLRF EGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWK PEITLREMVSEMVANDLEAAKKHSLLKSHGYDVAIALES" misc_feature complement(2132869..2133927) /gene="gmd" /locus_tag="SF2116" /note="GDP-D-mannose dehydratase [Cell wall/membrane/envelope biogenesis]; Region: Gmd; COG1089" /db_xref="CDD:440706" gene complement(2133959..2134507) /gene="wcaF" /locus_tag="SF2117" /db_xref="GeneID:1026791" CDS complement(2133959..2134507) /gene="wcaF" /locus_tag="SF2117" /note="Code: R; COG: COG0110" /codon_start=1 /transl_table=11 /product="acyl transferase" /protein_id="NP_707949.1" /db_xref="GeneID:1026791" /translation="MQDLSGFSVPKGFRGGNAIKVQLWWAVQATIFAWSPQVLYRWRA FLLRLFGAKIGKNVVIRPSVKITYPWKLTLGDYAWVGDDVNLYTLGEITIGAHSVISQ KSYLCTGSHDHASQHFTINATPIVIGEKCWLATDVFVAPGVTIGDGTVVGARSSVFKS LPANVVCRGNPAVVIRERVETE" misc_feature complement(2133968..2134507) /gene="wcaF" /locus_tag="SF2117" /note="colanic acid biosynthesis acetyltransferase WcaF; Region: WcaF; TIGR04008" /db_xref="CDD:188523" misc_feature complement(order(2133998..2134000,2134046..2134048, 2134103..2134105,2134112..2134114,2134118..2134120, 2134169..2134177,2134193..2134195,2134211..2134213, 2134217..2134219,2134247..2134249,2134271..2134273, 2134277..2134279)) /gene="wcaF" /locus_tag="SF2117" /note="putative trimer interface [polypeptide binding]; other site" /db_xref="CDD:100063" misc_feature complement(order(2133995..2133997,2134001..2134006, 2134031..2134036,2134049..2134054,2134088..2134090, 2134103..2134108,2134112..2134114,2134169..2134171, 2134175..2134177,2134265..2134267,2134271..2134273)) /gene="wcaF" /locus_tag="SF2117" /note="putative active site [active]" /db_xref="CDD:100063" misc_feature complement(order(2134175..2134177,2134265..2134267, 2134271..2134273)) /gene="wcaF" /locus_tag="SF2117" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:100063" misc_feature complement(order(2133983..2133985,2133995..2133997, 2134001..2134006,2134010..2134012,2134031..2134036, 2134049..2134054,2134058..2134060,2134088..2134090, 2134103..2134108,2134112..2134114,2134169..2134171, 2134175..2134177)) /gene="wcaF" /locus_tag="SF2117" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:100063" mobile_element 2134648..2135415 /mobile_element_type="insertion sequence:IS1" gene 2134703..2134978 /gene="insA" /locus_tag="SF2118" /db_xref="GeneID:1027351" CDS 2134703..2134978 /gene="insA" /locus_tag="SF2118" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707950.1" /db_xref="GeneID:1027351" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 2134724..>2134975 /gene="insA" /locus_tag="SF2118" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 2135005..2135400 /gene="insB" /locus_tag="SF2119" /db_xref="GeneID:1025302" CDS 2135005..2135400 /gene="insB" /locus_tag="SF2119" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707951.1" /db_xref="GeneID:1025302" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLKLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 2135008..2135397 /gene="insB" /locus_tag="SF2119" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2135335..2136309) /gene="wcaD" /locus_tag="SF2120" /pseudo /db_xref="GeneID:1025305" misc_feature complement(2135335..2136309) /gene="wcaD" /locus_tag="SF2120" /note="Similar to Escherichia coli K12 colanic acid polymerase ref: NP_416560.1 (405 aa). BLAST with identity of 96% in 324 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(2136212..2137429) /gene="wcaC" /locus_tag="SF2121" /db_xref="GeneID:1026647" CDS complement(2136212..2137429) /gene="wcaC" /locus_tag="SF2121" /note="Code: M; COG: COG0438" /codon_start=1 /transl_table=11 /product="glycosyl transferase" /protein_id="NP_707952.1" /db_xref="GeneID:1026647" /translation="MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGK ESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFGNFNELYRTITRTPGPVVLHFHV LHSYWLNLNSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP TLNNYPPVKIDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSLYGPGRCRIIN NGIDMATEAILADLPPVRETQGKPKIAVVAHDLRYDGKTNQQLVREMMALGDKIELHT FGKFSPFTAGNVVNHGFETDKRKLMSALNQMDALVFSSRVDNYPLILCEALSIGVPVI ATHSDAAREVLQKSGGKTVSEEEVLQLVQLSKPEIAQAIFGTTLAEFSQRSRAAYSGQ QMLEEYVNFYQNL" misc_feature complement(2136215..2137429) /gene="wcaC" /locus_tag="SF2121" /note="colanic acid biosynthesis glycosyl transferase WcaC; Region: WcaC; TIGR04015" /db_xref="CDD:274919" gene complement(2137426..2137914) /gene="wcaB" /locus_tag="SF2122" /db_xref="GeneID:1026331" CDS complement(2137426..2137914) /gene="wcaB" /locus_tag="SF2122" /note="Code: E; COG: COG1045" /codon_start=1 /transl_table=11 /product="acyl transferase" /protein_id="NP_707953.2" /db_xref="GeneID:1026331" /translation="MLEDLRANSWSLRPCCMVLAYRVAHFCSVWRKKNVLNNLWAAPL LVLYRIITECFFGYEIQAAATIGRRFTIHHGYAVVINKNVVAGDDFTIRHGVTIGNRG ADNMACPHIGNGVELGANVIILGDITLGNNVTVGAGSVVLDSVPDNALVVGEKARVKV IK" misc_feature complement(2137429..2137866) /gene="wcaB" /locus_tag="SF2122" /note="putative acyl transferase; Provisional; Region: PRK10191" /db_xref="CDD:182295" gene complement(2137917..2138756) /gene="wcaA" /locus_tag="SF2123" /pseudo /db_xref="GeneID:1025310" misc_feature complement(2137917..2138756) /gene="wcaA" /locus_tag="SF2123" /note="Similar to Escherichia coli K12 regulator gi: 1788372 (280 aa). BLAST with identity of 96% in 279 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2138849..2141047) /locus_tag="SF2124" /db_xref="GeneID:1025306" CDS complement(2138849..2141047) /locus_tag="SF2124" /note="Code: N; COG: COG3206" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707954.3" /db_xref="GeneID:1025306" /translation="MGAGIERRAGIRMTEKVKQHAAPVTGSDEIDIGRLVGTVIEARW WVIGITVVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAE IQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMA DQVFTLNVLDDKNYTLSSDGGFSARGQAGQMLKKEGVTLMVEAIHARPGSEFTVTKYS TLGMINQLQNSLTVTENGKDAGVLSLTYTGEDREQIRDILNSIARNYQEQNIERKSAE ASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNE LTFKEAEISKLYTKVHPAYRTLLEKRQALEEEKAKLNGRVTAMPKNQQEIVRLTRDVE SGQQVYMQLLNKEQELKITEASTVGDVRIIDPAITQPGVLKPKKGLIILGAIILGLML SIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKARDSVKTIKGVKRYKQSQL LAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGKTFVCANLAAVISQT NKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQV PPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAV NTLKEVETSLSRFEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAK" misc_feature complement(2138855..2141011) /locus_tag="SF2124" /note="tyrosine-protein kinase Wzc; Region: PRK11519" /db_xref="CDD:183173" misc_feature complement(order(2138954..2138959,2138966..2138968, 2138978..2138980,2138987..2138992,2138996..2138998, 2139002..2139007,2139041..2139043,2139050..2139055, 2139062..2139073,2139077..2139082,2139149..2139151, 2139158..2139160,2139185..2139187,2139311..2139316, 2139320..2139322,2139404..2139406,2139464..2139472, 2139476..2139481,2139488..2139490)) /locus_tag="SF2124" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:349772" misc_feature complement(order(2138924..2138926,2139086..2139088, 2139305..2139307,2139320..2139322,2139386..2139403)) /locus_tag="SF2124" /note="active site" /db_xref="CDD:349772" gene complement(2141014..2141457) /gene="wzb" /locus_tag="SF2125" /db_xref="GeneID:1025904" CDS complement(2141014..2141457) /gene="wzb" /locus_tag="SF2125" /note="Code: T; COG: COG0394" /codon_start=1 /transl_table=11 /product="tyrosine phosphatase" /protein_id="NP_707955.1" /db_xref="GeneID:1025904" /translation="MFNNILVVCVGNICRSPMAERLLQRYHPELKVESAGLGALVGKG ADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMDKRHIERLCEMAPEMRGKVM LFGHWDNECEIPDPYHKSRETFAAVYTLLERSARQWAQALNAEQV" misc_feature complement(2141017..2141457) /gene="wzb" /locus_tag="SF2125" /note="low molecular weight protein-tyrosine-phosphatase Wzb; Region: PRK10126" /db_xref="CDD:182256" misc_feature complement(order(2141107..2141109,2141113..2141115, 2141410..2141433)) /gene="wzb" /locus_tag="SF2125" /note="active site" /db_xref="CDD:319971" gene complement(2141463..2142602) /gene="wza" /locus_tag="SF2126" /db_xref="GeneID:1025325" CDS complement(2141463..2142602) /gene="wza" /locus_tag="SF2126" /note="Code: M; COG: COG1596" /codon_start=1 /transl_table=11 /product="polysaccharide export protein Wza" /protein_id="NP_707956.1" /db_xref="GeneID:1025325" /translation="MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADF DLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPE LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQ VDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHN GREERISLQALMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGM TLTEALANAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSLVMATEF RLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNW" misc_feature complement(2141466..2142602) /gene="wza" /locus_tag="SF2126" /note="polysaccharide export protein Wza; Provisional; Region: PRK15078" /db_xref="CDD:237903" gene 2143261..2144844 /gene="yegH" /locus_tag="SF2127" /db_xref="GeneID:1025078" CDS 2143261..2144844 /gene="yegH" /locus_tag="SF2127" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707957.2" /db_xref="GeneID:1025078" /translation="MEWIADPSIWAGLITLIVIELVLGIDNLVFIAILAEKLPPKQRD RARVTGLLLAMLMRLLLLASISWLVTLTQPLFSFRSFTFSARDLIMLFGGFFLLFKAT MELNERLEGKDSNNPTQRKGAKFWGVVTQIVVLDAIFSLDSVITAVGMVDHLLVMMAA VVIAISLMLMASKPLTQFVNSHPTIVILCLSFLLMIGFSLVAEGFGFVIPKGYLYAAI GFSVMIEALNQLAIFNRRRFLSANQTLRQRTTEAVMRLLSGQKEDAELDAKTASMLVD HGNQQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEEEIRQLLERNQHT RLVVTDGDDAEDLLGVVHVIDLLQQSLRGEPLNLRVLIRQPLVFPETLPLLPALEQFR NARTHFAFVVDEFGSVEGIVTLSDVTETIAGNLPNEVEEIDARHDIQKNADGSWTANG HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPKPGEEVQVGDYLLKTLQVESHR VQKVQIIPLRKDGEMEYEV" misc_feature 2143261..2143971 /gene="yegH" /locus_tag="SF2127" /note="Tellurite resistance membrane protein TerC [Inorganic ion transport and metabolism]; Region: TerC; COG0861" /db_xref="CDD:440622" misc_feature 2143693..2144832 /gene="yegH" /locus_tag="SF2127" /note="Hemolysin-related protein, contains CBS domains, UPF0053 family [General function prediction only]; Region: TlyC; COG1253" /db_xref="CDD:440865" gene complement(2145296..2147149) /gene="asmA" /locus_tag="SF2128" /db_xref="GeneID:1027340" CDS complement(2145296..2147149) /gene="asmA" /locus_tag="SF2128" /note="Code: M; COG: COG2982" /codon_start=1 /transl_table=11 /product="assembly protein" /protein_id="NP_707958.1" /db_xref="GeneID:1027340" /translation="MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSG YQLQLDGPLRWHVWPQLSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVK QVMLKGAVIQLTPQTEAVRSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQ HEDDEQVTIRNIRLQMEQDPQHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTA AIEQINWQLQGADLPKQGIQGQGSFQSQWQESHKRLSFNQISLTANDSTLSGQAQVTL TEKPEWQLRLQFPQLNLDNLIPLNETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQ GLQGFTADILLQASNVRWRGMNFTDVATQMTNKSGLLEITQLQGKLNGGKVSLPGTLD ATSINPRINFQPRLENVEIGTILKAFNYPISLTGKMSLAGDFSGADIDADAFRHNWQG QAHVEMTDTRMEGMNFQQMIQQAVERNGGDVKAAENFDNVTRLDRFTTDLTLKDGVVT LNDMQGQSPVLALTGEGMLNLADQTCDTQFDIRVVGGWNGESKLIDFLKETPVPLRVY GNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAERNKDSRNGKDVKKLLEKM" misc_feature complement(2145299..2147149) /gene="asmA" /locus_tag="SF2128" /note="putative assembly protein; Provisional; Region: PRK10833" /db_xref="CDD:236772" gene complement(2147171..2147752) /gene="dcd" /locus_tag="SF2129" /db_xref="GeneID:1025350" CDS complement(2147171..2147752) /gene="dcd" /locus_tag="SF2129" /note="Code: F; COG: COG0717" /codon_start=1 /transl_table=11 /product="deoxycytidine triphosphate deaminase" /protein_id="NP_707959.1" /db_xref="GeneID:1025350" /translation="MRLCDRDIEAWLDEGRLSINPRPPVERINGATVDVRLGNKFRTF RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLDEGEAFYLHPGELALAVTLESVTLPAD LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF EPLSGPAARPYNRREDAKYRNQQGAVASRIDKD" misc_feature complement(2147183..2147749) /gene="dcd" /locus_tag="SF2129" /note="deoxycytidine triphosphate deaminase; Region: dCTP_deam; TIGR02274" /db_xref="CDD:274062" misc_feature complement(order(2147282..2147284,2147294..2147296, 2147303..2147317,2147327..2147329,2147333..2147335, 2147339..2147341,2147345..2147347,2147366..2147368, 2147378..2147380,2147393..2147401,2147414..2147431, 2147435..2147437,2147483..2147485,2147489..2147494, 2147507..2147509)) /gene="dcd" /locus_tag="SF2129" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:143638" misc_feature complement(order(2147345..2147350,2147360..2147362, 2147369..2147374,2147378..2147380,2147417..2147425)) /gene="dcd" /locus_tag="SF2129" /note="active site" /db_xref="CDD:143638" gene complement(2147844..2148485) /gene="udk" /locus_tag="SF2130" /db_xref="GeneID:1025324" CDS complement(2147844..2148485) /gene="udk" /locus_tag="SF2130" /note="Code: F; COG: COG0572" /codon_start=1 /transl_table=11 /product="uridine/cytidine kinase" /protein_id="NP_707960.1" /db_xref="GeneID:1025324" /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI PEDCYYKDQSHLSMEERVKTNYDHPSAMDHSLLLEHLQALKRGSAIDLPVYSYVEHTR MKETVTVEPKKVIILEGILLLTDARLRDELNFSIFVDTPLDICLMRRIKRDVNERGRS MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE" misc_feature complement(2147847..2148479) /gene="udk" /locus_tag="SF2130" /note="uridine/cytidine kinase; Provisional; Region: PRK05480" /db_xref="CDD:235492" misc_feature complement(order(2147898..2147900,2148042..2148044, 2148420..2148422)) /gene="udk" /locus_tag="SF2130" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238981" misc_feature complement(order(2148039..2148041,2148279..2148281, 2148345..2148347)) /gene="udk" /locus_tag="SF2130" /note="Sugar specificity [active]" /db_xref="CDD:238981" misc_feature complement(order(2148015..2148017,2148186..2148188, 2148195..2148197,2148201..2148203,2148288..2148290, 2148336..2148338)) /gene="udk" /locus_tag="SF2130" /note="Pyrimidine base specificity [active]" /db_xref="CDD:238981" gene 2148806..2153562 /gene="yegE" /locus_tag="SF2131" /pseudo /db_xref="GeneID:1026831" misc_feature 2148806..2153562 /gene="yegE" /locus_tag="SF2131" /note="Similar to Escherichia coli K12 sensor-type protein gi: 1788381 (1106 aa). BLAST with identity of 97% in 1586 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element 2149216..2150589 /mobile_element_type="insertion sequence:ISSfl2" gene complement(2149247..2150443) /locus_tag="SF2132" /db_xref="GeneID:1025330" CDS complement(2149247..2150443) /locus_tag="SF2132" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl2 transposase" /protein_id="NP_707961.1" /db_xref="GeneID:1025330" /translation="MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDE NKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAG EAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASSRIR GLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKR LAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYP VLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGN KALKRALFLSAFTALRDPLSRAYYTRKMSQGKRHNQALIALARRRCDVLFAMMRDGTF YTPQGS" misc_feature complement(2149271..2150407) /locus_tag="SF2132" /note="IS110 family transposase; Region: transpos_IS110; NF033542" /db_xref="CDD:468073" gene complement(2153672..2154520) /gene="alkA" /locus_tag="SF2133" /db_xref="GeneID:1025319" CDS complement(2153672..2154520) /gene="alkA" /locus_tag="SF2133" /note="Code: L; COG: COG0122" /codon_start=1 /transl_table=11 /product="3-methyladenine DNA glycosylase" /protein_id="NP_707962.1" /db_xref="GeneID:1025319" /translation="MYILNWQPPYDWSWMLGFLAARAVSGVETVADSYYARSLAVGEY RGVVTAIPDIARHTLHINLSAGLEPVAAECLAKMSRLLDLQCNPQIVNGALGKLGAAR PGLRLPGSVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQR LAAADPQALKALGMPLKRAEALIHLANAALEGTLPMTIPGDVEQAMKTLQTFPGIGRW TANYFALRGWQAKDVFLPDDYLIKQRFLGMTPAQIRRYAERWKPWRSYALLHIWYTEG WQPDEA" misc_feature complement(2153675..2154520) /gene="alkA" /locus_tag="SF2133" /note="3-methyl-adenine DNA glycosylase II; Provisional; Region: PRK10308" /db_xref="CDD:236671" gene 2154591..2156006 /gene="yegD" /locus_tag="SF2134" /pseudo /db_xref="GeneID:1025326" misc_feature 2154591..2156006 /gene="yegD" /locus_tag="SF2134" /note="Similar to Escherichia coli K12 heat shock protein gi: 1788384 (472 aa). BLAST with identity of 98% in 472 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2156018..2157958) /locus_tag="SF2135" /pseudogene="unknown" /db_xref="GeneID:1027347" gene complement(2157955..2158716) /locus_tag="SF2136" /db_xref="GeneID:1026677" CDS complement(2157955..2158716) /locus_tag="SF2136" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707964.1" /db_xref="GeneID:1026677" /translation="MSWRLVYASAVGTSHISADLPCQDACQMQVAWLNDQQPLLVMFL ADGAGSVSQGGEGAMLAVNEAMAYMSQKVQGGELGLNDILATDIVLTVRQRLFAEAEA KELAVRDFACTFLGLISSANGTLIMQIGDGGVVVDFGHGLQLPLTPMVGEYANMTHFI TDEDAVSRLETFTSTERVHKVAAFTDGIQRLALNMLDNSPHVPFFTPFFNGLASATQE QLDLLPELLKQFLSSPAVNERTDDDKTLALALWLP" misc_feature complement(2158060..2158686) /locus_tag="SF2136" /note="Protein phosphatase 2C; Region: PP2C_2; pfam13672" /db_xref="CDD:404547" gene complement(2158713..2159372) /locus_tag="SF2137" /db_xref="GeneID:1027352" CDS complement(2158713..2159372) /locus_tag="SF2137" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707965.2" /db_xref="GeneID:1027352" /translation="MSEQITFATSDFASNPEPRCPCILLLDVSGSMSGRPINELNTGL VTFRDELLADSLALKRVELGIVTFGPVHVEQPFTSAANFFPPILFAQGDTPMGAAITK ALDMVEERKREYRANGISYYRPWIFLITDGAPIDEWQAAANKVFRGEEDKRFAFFSIG VQGADMKTLAQISVRQPLPLQGLQFRELFSWLSSSLRSVSRSTPGTEVVLEAPKGWTS V" misc_feature complement(2158806..2159324) /locus_tag="SF2137" /note="VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b...; Region: vWA_subfamily; cd01464" /db_xref="CDD:238741" misc_feature complement(order(2158980..2158982,2159091..2159093, 2159280..2159282,2159286..2159288,2159292..2159294)) /locus_tag="SF2137" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:238741" mobile_element complement(2159660..2161028) /mobile_element_type="insertion sequence:ISSfl2" gene 2159806..2161002 /locus_tag="SF2138" /db_xref="GeneID:1025317" CDS 2159806..2161002 /locus_tag="SF2138" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl2 transposase" /protein_id="NP_707966.1" /db_xref="GeneID:1025317" /translation="MTESSDYESVQVFIGVDVGKDTHHAVAINRSGKRLFDKALPNDE NKLRSLISDLKQHGQILLVVDQPATIGALPVAVARSEGVLVGYLPGLAMRRIADLHAG EAKTDARDAAIIAEAARTLPHALRTLKLADEQIAELSMLCGFDDDLAAQTTQASNRIL GLLTQIHPAPERVLGPRLEHPAVLDLLQRYPSPEKLASLGEKKLAAQLCKLAPRLGKR LAADIAQALAEQTVVVPGTNAAAVVLPRLALQLITLRKQRDEVALEVEQRVLAHPLYP VLTSMPGVGVRTAARLLTEVACRAFASAAHLAAYAGLAPVTRRSGSSIRGEHPSRRGN KALKRALFLSAFAALRDPLSRAYYTRKMSQGKRHNQVLIALARRRCDVLFAMMRDGTF YTPQGS" misc_feature 2159842..2160978 /locus_tag="SF2138" /note="IS110 family transposase; Region: transpos_IS110; NF033542" /db_xref="CDD:468073" gene 2161004..2162056 /locus_tag="SF2139" /db_xref="GeneID:1024632" CDS 2161004..2162056 /locus_tag="SF2139" /note="Code: Q; COG: COG0845" /codon_start=1 /transl_table=11 /product="acriflavin resistance protein AcrA-like protein" /protein_id="NP_707967.1" /db_xref="GeneID:1024632" /translation="MLDNLIGARYLTGLGTITAANTVTVRSRVDGQLMALHFQEGQQV KAGDLLAEIDPSQFKVALAQTQGQLAKDKATLANARRDLARYQQLAKTNLVSRQELDA QQALVSETEGTIKADEASVASAQLQLDWSRITAPVDGRVGLKQVDVGNQISSGDTTGI VVITQTHPIDLVFTLPESDIATVVQAQKAGKPLMVEAWDRTNSKKLSEGTLLSLDNQI DATTGTIKVKARFNNQDDALFPNQFVNARMLVDTEQNAVVIPTAALQMGNEGHFVWVL NSENKVSKHLVTPGIQDSQKVVIRAGISAGDRVVTDGIDRLTEGAKVEVVEAQSATTP EEKATSREYAKKGARS" misc_feature 2161028..2162053 /locus_tag="SF2139" /note="MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit; Region: PRK11556" /db_xref="CDD:183194" gene 2162056..2165178 /gene="yegN" /locus_tag="SF2140" /pseudo /db_xref="GeneID:1026796" misc_feature 2162056..2165178 /gene="yegN" /locus_tag="SF2140" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788390 (1041 aa). BLAST with identity of 98% in 1041 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2165179..2168244 /gene="yegO" /locus_tag="SF2141" /db_xref="GeneID:1025329" CDS 2165179..2168244 /gene="yegO" /locus_tag="SF2141" /note="Code: Q; COG: COG0841" /codon_start=1 /transl_table=11 /product="multidrug efflux system subunit MdtC" /protein_id="NP_707968.1" /db_xref="GeneID:1025329" /translation="MKFFALFIYRPVATILLSVAITLCGILGFRMLPVAPLPQVDFPV IMVSASLPGASPETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDIN GAARDVQAAINAAQSLLPSGMPSRPTYRKANPSDAPIMILTLTSDTYSQGELYDFAST QLAPTISQIDGVGDVDVGGSSLPAVRVGLTPQALFNQGVSLDDVRTAISNANVRKPQG ALEDGTHRWQIQTNDELKTAAEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTN AKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMAL TIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLL LMGGLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRML VALQQGYGKSLKWVLNHTRLVGVVLLGTIALNISIPKTFFPEQDTGVLMGGIQADQSI SFQAMRGKLQDFMKIIRDDPAVDNVTGFTGGSRVSSGMMFITLKPRDERSETAQQIID RLRVKLAKEPGANLFLMAVQDIRVGGRQSNASYQYTLLSDDLAALREWEPKIRKKLAT LPELADVNSDQQDNGAEMNLVYDRDTMARLGIDVQAANSLLNNAFGQRQISTIYQPMN QYKVVMEVDPRYTQDISALEKMFVINNEGKAIPLSYFAKWQPANAPLSVNHQGLSAAS TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAI ATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVK KNAIMMVDFALEAQRHGNLTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGS ELRQPLEITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKPKQTVTE" misc_feature 2165179..2168241 /gene="yegO" /locus_tag="SF2141" /note="multidrug efflux system subunit MdtC; Provisional; Region: PRK10614" /db_xref="CDD:182589" gene 2168245..2169660 /gene="yegB" /locus_tag="SF2142" /db_xref="GeneID:1025321" CDS 2168245..2169660 /gene="yegB" /locus_tag="SF2142" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_707969.1" /db_xref="GeneID:1025321" /translation="MTDLPDSTRWQLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESP LHMHMVIVSYVLTVAVMLPASGWLADKVGVRNIFFTAIVLFTLGSLFCALSGTLNELL LARALQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY ASWHWIFLINIPVGIIGAIATLMLMPNYTMQTRRFDLSGFLLLAVGMAVLTLALDGSK GTGLSPLAIAGLVAVGVVALVLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFAGRIG SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATT LGLSLVTLLFMTTALLGWYYVLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNS LLSMIMQLSMSIGVTIAGLLLGLFGSQHISVDSGTTQTVFMYTWLSMAFIIALPAFIF ARVPNDTHQNVAISRRKRSAQ" misc_feature 2168245..2169657 /gene="yegB" /locus_tag="SF2142" /note="putative transporter; Provisional; Region: PRK10504" /db_xref="CDD:182502" gene 2169657..2171060 /gene="baeS" /locus_tag="SF2143" /db_xref="GeneID:1027350" CDS 2169657..2171060 /gene="baeS" /locus_tag="SF2143" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="signal transduction histidine-protein kinase BaeS" /protein_id="NP_707970.1" /db_xref="GeneID:1027350" /translation="MKFWRPGITGKLFLAIFATCIVLLISMHWAVRISFERGFIDYIK HGNEQRLQLLSDALGEQYAQHGNWRFLRNNDRFVFQILRSFEHDNSEDKPGPGMPPHG WRTQFWVVDQNNKVLVGPRAPIPPDGTRRPILVNGAEVGAVIASPVERLTRNTDINFD KQQRQTSWLIVALATLLAALATFLLARGLLAPVKRLVDGTHKLAAGDFTTRVTPTSED ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRKFTPE TVASLQAEVGTLTKLVDDLHQLSMSDEGALAYQKAPVDLIPLLEVAGGAFRERFASRG LKLQFSLPDSITVFGDRDRLMQLFNNLLENSLRYTDSGGSLKISAEQHDKTVRLTFAD SAPGVSDDQLQKLFERFYRTEGSRNRASGGSGLGLAICLNIVEAHNGRIIAAHSPFGG VSITVELPLERDLQREV" misc_feature 2169657..2171057 /gene="baeS" /locus_tag="SF2143" /note="two-component system sensor histidine kinase BaeS; Region: PRK10549" /db_xref="CDD:182539" gene 2171057..2171779 /gene="baeR" /locus_tag="SF2144" /db_xref="GeneID:1025332" CDS 2171057..2171779 /gene="baeR" /locus_tag="SF2144" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator BaeR" /protein_id="NP_707971.1" /db_xref="GeneID:1025332" /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLISHGD QVLAYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDVPIVMVTAKIEEIDRLLGLEI GADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLIIDEGRFQASWRGKMLD LTPAEFRLLKTLSHEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE QSFIRAVYGVGYRWEADACRIV" misc_feature 2171057..2171776 /gene="baeR" /locus_tag="SF2144" /note="DNA-binding transcriptional regulator BaeR; Provisional; Region: PRK10710" /db_xref="CDD:182665" gene 2171931..2172302 /locus_tag="SF2145" /db_xref="GeneID:1027346" CDS 2171931..2172302 /locus_tag="SF2145" /note="Code: S; COG: COG3422" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707972.1" /db_xref="GeneID:1027346" /translation="MLFSISNFNQGVIMAGWFELSKSSDNQFRFVLKAGNGETILTSE LYTSKASAEKGIASVRSNSPQEERYEKKTASNGKFYFNLKAANHQIIGSSQMYATAQS RETGIASVKANGTSQTVKDNT" misc_feature 2172000..2172140 /locus_tag="SF2145" /note="Domain of unknown function (DUF1508); Region: DUF1508; pfam07411" /db_xref="CDD:429450" misc_feature 2172132..2172299 /locus_tag="SF2145" /note="Uncharacterized conserved protein YegP, UPF0339 family [Function unknown]; Region: YegP; COG3422" /db_xref="CDD:442648" gene 2172449..2173810 /gene="yegQ" /locus_tag="SF2146" /db_xref="GeneID:1025312" CDS 2172449..2173810 /gene="yegQ" /locus_tag="SF2146" /note="Code: O; COG: COG0826" /codon_start=1 /transl_table=11 /product="protease" /protein_id="NP_707973.2" /db_xref="GeneID:1025312" /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM LVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIHNQVPDME IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDDVGNIVHKY EPIPVQNVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDTSLLETLEGLAHRGY TEGFLRRHTHDDYQNYEYGYSVSDRQQFVGEFTGERKGDLAAVAVKNKFSVGDSLELM TPQGNINFTLEHMENAKGEAMPVAPGDGYTVWLPVPQDLELNYALLMRNFSGETTRNP HGK" misc_feature 2172449..2173777 /gene="yegQ" /locus_tag="SF2146" /note="putative protease; Provisional; Region: PRK15452" /db_xref="CDD:237969" gene complement(2174015..2174164) /locus_tag="SF2147" /pseudo /db_xref="GeneID:1025314" misc_feature complement(2174015..2174164) /locus_tag="SF2147" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788400 (89 aa). BLAST with identity of 94% in 49 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(2174152..2174529) /locus_tag="SF2148" /db_xref="GeneID:1025322" CDS complement(2174152..2174529) /locus_tag="SF2148" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707974.1" /db_xref="GeneID:1025322" /translation="MPLLYLNTRECRWYLMGEGEMKKIAAISLISIFLISGCAVHNDE TSIGKFGLAYKSNIQRKLDNQYYTEAEASLARGRISGAENIVKNDAAHFCVTQGKKMQ IVDLKTEGAGLHGVARLTFKCGE" gene 2174875..2175774 /locus_tag="SF2149" /db_xref="GeneID:1025346" CDS 2174875..2175774 /locus_tag="SF2149" /note="Code: S; COG: COG1597" /codon_start=1 /transl_table=11 /product="lipid kinase" /protein_id="NP_707975.1" /db_xref="GeneID:1025346" /translation="MAEFPASLLILNGKSTDNLPLREAIMLLREEGMTIHVRVTWEKG DAARFVEEARKLGVATVIAGGGDGTINEVCTALIQCEGDDIPALGILPLGTANDFATS VGIPEALDKALKLAIAGNAIAIDMAQVNKQTCFINMATGGFGTRITTETPEKLKAALG GVSYIIHGLMRMDTLQPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPNALIND GLLQLRIFTGDEILPALVSTLKSDEDNPNIIEGASSWFDIQAPHEITFNLDGEPLSGQ NFHIEILPAALRCRLPPDCPLLR" misc_feature 2174878..2175771 /locus_tag="SF2149" /note="lipid kinase; Reviewed; Region: PRK13054" /db_xref="CDD:237281" gene complement(2175856..2176635) /gene="gatR" /locus_tag="SF2150" /db_xref="GeneID:1027339" CDS complement(2175856..2176635) /gene="gatR" /locus_tag="SF2150" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="galactitol utilization operon repressor" /protein_id="NP_707976.1" /db_xref="GeneID:1027339" /translation="MTMNSFERRNKIIQLVNEQGTVLVQDLAGVFAASEATIRADLRF LEQKGVVTRFHGGAAKIMSGNSETETQEVGFKERFQLASAPKNRIAQAAVKMIHEGMT VILDSGSTTMLIAEGLMTAKNITVITNSLPAAFALSENKDITLVVCGGTVRHKTRSMH GSIAERSLQDINADLMFVGADGIDAVNGITTFNEGYSISGAMVTAANKVIAVLDSSKF NRRGFNQVLPIEKIDIIVTDDAVSEVDKLALQKTRVKLITV" misc_feature complement(2175859..2176629) /gene="gatR" /locus_tag="SF2150" /note="DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:440960" gene complement(2176735..2177775) /gene="gatD" /locus_tag="SF2151" /db_xref="GeneID:1027349" CDS complement(2176735..2177775) /gene="gatD" /locus_tag="SF2151" /note="Code: ER; COG: COG1063" /codon_start=1 /transl_table=11 /product="galactitol-1-phosphate dehydrogenase" /protein_id="NP_707977.1" /db_xref="GeneID:1027349" /translation="MKSVVNDTDGIVRVAKSVIPEIKHQDEVRVKIASSGLCGSDLPR IFKNGAHYYPITLGHEFSGYIDAVGSGVDDLHPGDAVACVPLLPCFTCPECLKGFYSQ CAKYDFIGSRRDGGFAEYIVVKRKNVFALPTDMPIEDGAFIEPITVGLHAFHLAQGCE NKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAP QMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKI LRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFESFTQAVRDIA RNAMQGKVLLIP" misc_feature complement(2176744..2177775) /gene="gatD" /locus_tag="SF2151" /note="galactitol-1-phosphate 5-dehydrogenase; Region: PRK10309" /db_xref="CDD:182371" misc_feature complement(order(2176912..2176920,2176996..2177001, 2177059..2177061,2177065..2177070,2177140..2177142, 2177185..2177187,2177197..2177202,2177257..2177274, 2177332..2177334,2177344..2177346,2177647..2177649, 2177656..2177664)) /gene="gatD" /locus_tag="SF2151" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176198" misc_feature complement(order(2177344..2177346,2177599..2177601, 2177656..2177658,2177662..2177664)) /gene="gatD" /locus_tag="SF2151" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176198" mobile_element complement(2177793..2178560) /mobile_element_type="insertion sequence:IS1" gene complement(2177808..2178203) /gene="insB" /locus_tag="SF2152" /db_xref="GeneID:1026800" CDS complement(2177808..2178203) /gene="insB" /locus_tag="SF2152" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707978.1" /db_xref="GeneID:1026800" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(2177811..2178200) /gene="insB" /locus_tag="SF2152" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2178230..2178505) /gene="insA" /locus_tag="SF2153" /db_xref="GeneID:1025338" CDS complement(2178230..2178505) /gene="insA" /locus_tag="SF2153" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707979.1" /db_xref="GeneID:1025338" /translation="MASISIRCPSCSATEGVVRNSKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<2178233..2178484) /gene="insA" /locus_tag="SF2153" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(2178600..2179955) /gene="gatC" /locus_tag="SF2154" /db_xref="GeneID:1026786" CDS complement(2178600..2179955) /gene="gatC" /locus_tag="SF2154" /codon_start=1 /transl_table=11 /product="PTS system galactitol-specific transporter subunit IIC" /protein_id="NP_707980.1" /db_xref="GeneID:1026786" /translation="MFSEVMRYILDLGPTVMLPVVIIIFSKILGMKAGDCFKAGLHIG IGFVGIGLVIGLMLDSIGPAAKAMAENFDLNLHVVDVGWPGSSPMTWASQIALVAIPI AILVNVAMLLTRMTRVVNVDIWNIWHMTFTGALLHLATGSWMIGMAGVVIHAAFVYKL GDWFARDTRNFFELEGIAIPHGTSAYMGPIAVLVDAIIEKIPGVNRIKFSADDIQRKF GPFGEPVTVGFVMGLIIGILAGYDVKGVLQLAVKTAAVMLLMPRMIKPIMDGLTPIAK QARSRLQAKFGGQEFLIGLDPALLLGHTAVVSASLIFIPLTILIAVCVPGNQVLPFGD LATIGFFVAMAVAVHRGNLFRTLISGVIIMSITLWIATQTIGLHTQPAANAGALKAGG MVASMDQGGSPITWLLIQVFSPQNIPGFIIIGAIYLTGIFMTWRRARGFTKQEKAVLA E" misc_feature complement(2178717..2179931) /gene="gatC" /locus_tag="SF2154" /note="PTS system, galactitol-specific IIC component; Region: EIIC-GAT; TIGR00827" /db_xref="CDD:129907" gene complement(2179959..2180243) /gene="gatB" /locus_tag="SF2155" /db_xref="GeneID:1027334" CDS complement(2179959..2180243) /gene="gatB" /locus_tag="SF2155" /codon_start=1 /transl_table=11 /product="PTS system galactitol-specific transporter subunit IIB" /protein_id="NP_707981.1" /db_xref="GeneID:1027334" /translation="MKRKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEI ETYMDGVHLICTTARVDRSFGDIPLVHGMPFVSGVGIEALQNKILTILQG" misc_feature complement(2179962..2180243) /gene="gatB" /locus_tag="SF2155" /note="PTS galactitol transporter subunit IIB; Region: PRK10310" /db_xref="CDD:182372" misc_feature complement(order(2180196..2180204,2180208..2180219)) /gene="gatB" /locus_tag="SF2155" /note="P-loop; other site" /db_xref="CDD:99908" misc_feature complement(order(2180196..2180201,2180208..2180213, 2180217..2180219)) /gene="gatB" /locus_tag="SF2155" /note="active site" /db_xref="CDD:99908" misc_feature complement(2180217..2180219) /gene="gatB" /locus_tag="SF2155" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99908" gene complement(2180274..2180726) /gene="gatA" /locus_tag="SF2156" /db_xref="GeneID:1027354" CDS complement(2180274..2180726) /gene="gatA" /locus_tag="SF2156" /note="Code: GT; COG: COG1762" /codon_start=1 /transl_table=11 /product="PTS system galactitol-specific transporter subunit IIA" /protein_id="NP_707982.1" /db_xref="GeneID:1027354" /translation="MTNLFVRSGISFVDRSEVLTYIGNEMLAKGVVHDTWPQALIARE AEFPTGIMLEQHAIAIPHCEAIHAKSSAIYLLRPTNKVHFQQADDDNDVAVSLVIALI VENPQQQLKLLRCLFGKLQQPDIVETLITLPETQLKEYFTKYVLDSDE" misc_feature complement(2180277..2180726) /gene="gatA" /locus_tag="SF2156" /note="PTS galactitol transporter subunit IIA; Region: PRK09665" /db_xref="CDD:182023" misc_feature complement(order(2180541..2180543,2180598..2180600)) /gene="gatA" /locus_tag="SF2156" /note="active site" /db_xref="CDD:238129" misc_feature complement(2180541..2180543) /gene="gatA" /locus_tag="SF2156" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238129" gene complement(2180736..2181998) /gene="gatZ" /locus_tag="SF2157" /db_xref="GeneID:1025323" CDS complement(2180736..2181998) /gene="gatZ" /locus_tag="SF2157" /codon_start=1 /transl_table=11 /product="D-tagatose-1,6-bisphosphate aldolase subunit GatZ" /protein_id="NP_707983.1" /db_xref="GeneID:1025323" /translation="MKTLIARHKAGEHIGICSVCSAHPLVIEAALAFDRNSTRKVLIE ATSNQVNQFGGYTGMTPADFREFVFTIADKVGFARERIILGGDHLGPNCWQQENADAA MEKSVELVKAYVRAGFSKIHLDASMSCAGDTIPLAPETVAERAAVLCFAAESVATDCQ REQLSYVIGTEVPVPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIA IVVQPGVEFDHSNIIHYQPQEAQALAQWIENTRMVYEAHSTDYQTRTAYWELVRDHFA ILKVGPALTFALREAIFALAQIEQELIAPENRSGCLAVIEEVMLDEPQYWKKYYRTGF NDSLLDIRYSLSDRIRYYWPHSRIKNSVETMMVNLQGVDIPLGMISQYLPKQFERIQS GELSAMPHQLIMNKIYDVLRAYRYGCAE" misc_feature complement(2180739..2181998) /gene="gatZ" /locus_tag="SF2157" /note="tagatose-bisphosphate aldolase subunit GatZ; Region: PRK15052" /db_xref="CDD:237889" gene complement(2182027..2182881) /gene="gatY" /locus_tag="SF2158" /db_xref="GeneID:1027326" CDS complement(2182027..2182881) /gene="gatY" /locus_tag="SF2158" /note="Code: G; COG: COG0191" /codon_start=1 /transl_table=11 /product="tagatose-bisphosphate aldolase" /protein_id="NP_707984.2" /db_xref="GeneID:1027326" /translation="MYVVSTKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAANLHAP VIIAGTPGTFTHAGTENLLALVSAMAKQYHHPLAIHLDHHTKFDDIAQKVRSGVRSVM IDASHLPFAQNISRVKEVVDFCHRFDVSVEAELGQLGGQEDDVQVNEVDALYTNPAQA REFAEATGIDSLAVAIGTAHGMYASAPVLDFSRLENIRQWVNLPLVLHGASGLSTKDI QQTIKLGICKINVATELKNAFLQSLKNYLTEHPEATDPRDYLQSAKSAMRDVVSKVIA DCGCEGRA" misc_feature complement(2182030..2182881) /gene="gatY" /locus_tag="SF2158" /note="tagatose-bisphosphate aldolase; Reviewed; Region: gatY; PRK09195" /db_xref="CDD:181690" misc_feature complement(order(2182141..2182143,2182150..2182152, 2182162..2182164,2182171..2182176,2182180..2182185, 2182456..2182458,2182675..2182680,2182687..2182689, 2182699..2182701,2182711..2182719,2182726..2182728, 2182786..2182788,2182795..2182803)) /gene="gatY" /locus_tag="SF2158" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238477" misc_feature complement(order(2182183..2182188,2182192..2182194, 2182249..2182251,2182255..2182260,2182333..2182335, 2182339..2182347,2182633..2182638)) /gene="gatY" /locus_tag="SF2158" /note="active site" /db_xref="CDD:238477" misc_feature complement(order(2182258..2182260,2182342..2182344, 2182633..2182635)) /gene="gatY" /locus_tag="SF2158" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:238477" misc_feature complement(order(2182249..2182251,2182255..2182257, 2182333..2182335,2182339..2182341,2182345..2182347)) /gene="gatY" /locus_tag="SF2158" /note="Na+ binding site [ion binding]; other site" /db_xref="CDD:238477" gene complement(2183189..2184241) /locus_tag="SF2159" /db_xref="GeneID:1025344" CDS complement(2183189..2184241) /locus_tag="SF2159" /note="Code: G; COG: COG1830" /codon_start=1 /transl_table=11 /product="fructose-bisphosphate aldolase" /protein_id="NP_707985.1" /db_xref="GeneID:1025344" /translation="MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNN RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAI EAGCNCVASTYGVLVSVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMG AVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSA DLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQL ANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL INAVQDVYLDSKITIA" misc_feature complement(2183192..2184241) /locus_tag="SF2159" /note="class I fructose-bisphosphate aldolase; Region: PRK09250" /db_xref="CDD:236431" misc_feature complement(order(2183240..2183248,2183312..2183320, 2183390..2183392,2183483..2183485)) /locus_tag="SF2159" /note="putative active site; other site" /db_xref="CDD:188645" misc_feature complement(2183483..2183485) /locus_tag="SF2159" /note="catalytic residue [active]" /db_xref="CDD:188645" gene 2184281..2185284 /locus_tag="SF2160" /pseudo /db_xref="GeneID:1027337" misc_feature 2184281..2185284 /locus_tag="SF2160" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788416 (335 aa). BLAST with identity of 97% in 335 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2185281..2186246 /locus_tag="SF2161" /db_xref="GeneID:1025342" CDS 2185281..2186246 /locus_tag="SF2161" /note="Code: G; COG: COG0524" /codon_start=1 /transl_table=11 /product="kinase" /protein_id="NP_707986.1" /db_xref="GeneID:1025342" /translation="MSGARLHTLLPELTTRQPVMVVGAAVIDVIADAYALPWRGCDIE LKQQSVNVGGCALNIAVALKRLGIEAGNALPLGQGVWAEIIRNRMAKEGLISLIDNAE SDNGWCLALVEPDGERTFMSFSGVENQWNRQWLARLTVAPGNLLYFSGYQLASPCGEL LVEWLEKLQDVTPFIDFCPRIGDIPDALLARIMACRPLVSLNRQEAEIAAERFALSAE ITTLGKQWQEKFAAPLIVRLDKEGAWYFSNDASGCIPAFPTQVVDTIGAGDSHAGGVL AGLASGLPLADAVLLGNAVASWVVGHRGGDCAPTREELLLAHKNV" misc_feature 2185332..2186192 /locus_tag="SF2161" /note="YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time; Region: YegV_kinase_like; cd01944" /db_xref="CDD:238919" misc_feature order(2185452..2185454,2186076..2186078,2186085..2186087) /locus_tag="SF2161" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238919" misc_feature order(2185884..2185886,2185989..2185991,2186070..2186072, 2186079..2186084,2186091..2186093,2186157..2186159, 2186166..2186168) /locus_tag="SF2161" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238919" gene complement(2186220..2188304) /gene="yegW" /locus_tag="SF2163" /pseudo /db_xref="GeneID:1026684" misc_feature complement(2186220..2188304) /gene="yegW" /locus_tag="SF2163" /note="Similar to Escherichia coli K12 transcriptional regulator gi: 1788418 (249 aa). BLAST with identity of 98% in 694 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element 2186584..2187912 /mobile_element_type="insertion sequence:iso-IS10R" gene 2186691..2187899 /locus_tag="SF2162" /db_xref="GeneID:1027336" CDS 2186691..2187899 /locus_tag="SF2162" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_707987.1" /db_xref="GeneID:1027336" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature 2186805..2187860 /locus_tag="SF2162" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene complement(2188352..2189173) /gene="yegX" /locus_tag="SF2164" /db_xref="GeneID:1027297" CDS complement(2188352..2189173) /gene="yegX" /locus_tag="SF2164" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707988.2" /db_xref="GeneID:1027297" /translation="MQLRITSRKKLTALLCALGLISIVAIYPRQTVNFFYSTAVQITD YIHFYGYRPVKSFAIRIPASYTIHGLDVSRWQERIDWQRVAKMRDNDIRLQFAFIKAT EGEKLVDPYFSRNWQLSRENGLLRGAYHYFSPSVSASVQARLFLQTVDFSQGDFPAVL DVEERGKLSAKELRKRVSQWLKMVEKRTGKKPIIYSGAVFYHTNLAGYFNEYPWWVAH YYQRRPDNDGMAWRFWQHSDRGQVDGINGPVDFNVFNGTGMSCRHSLMGLKKRLK" misc_feature complement(2188406..2188972) /gene="yegX" /locus_tag="SF2164" /note="YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins; Region: GH25_YegX-like; cd06524" /db_xref="CDD:119384" misc_feature complement(order(2188424..2188426,2188469..2188471, 2188529..2188531,2188589..2188591,2188685..2188687, 2188691..2188693,2188781..2188783,2188787..2188789, 2188874..2188876,2188961..2188963)) /gene="yegX" /locus_tag="SF2164" /note="active site" /db_xref="CDD:119384" gene complement(2189238..2190038) /gene="thiD" /locus_tag="SF2165" /db_xref="GeneID:1025334" CDS complement(2189238..2190038) /gene="thiD" /locus_tag="SF2165" /note="Code: H; COG: COG0351" /codon_start=1 /transl_table=11 /product="bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase" /protein_id="NP_707989.1" /db_xref="GeneID:1025334" /translation="MKRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ NTRGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRYQIQNV VLDTVMLAKSGDPLLSPSAVATLRSRLLPQVSLITPNLPEAAALLDAPHARTEQEMLE QGRSLLAMGCGAVLMKGGHLDDEQSPDWLFTREGEQRFTAPRIMTKNTHGTGCTLSAA LAALRPRHTNWADTVQEAKIWLSSALAQADTLEVGHGIGPVHHFHAWW" misc_feature complement(2189241..2190038) /gene="thiD" /locus_tag="SF2165" /note="bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed; Region: PRK06427" /db_xref="CDD:180561" misc_feature complement(order(2189838..2189843,2189853..2189855, 2189862..2189864,2189871..2189876,2189880..2189882, 2189886..2189891,2189904..2189918,2189925..2189927, 2189931..2189948,2189955..2189957,2189964..2189969, 2189976..2189978,2189988..2189990,2189994..2189999, 2190003..2190005,2190024..2190026)) /gene="thiD" /locus_tag="SF2165" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238574" misc_feature complement(order(2189400..2189402,2189799..2189801, 2189907..2189909,2189970..2189972,2190006..2190008)) /gene="thiD" /locus_tag="SF2165" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238574" misc_feature complement(order(2189403..2189405,2189409..2189411, 2189511..2189513,2189613..2189615,2189724..2189726)) /gene="thiD" /locus_tag="SF2165" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238574" gene complement(2190035..2190823) /gene="thiM" /locus_tag="SF2166" /db_xref="GeneID:1023547" CDS complement(2190035..2190823) /gene="thiM" /locus_tag="SF2166" /note="Code: H; COG: COG2145" /codon_start=1 /transl_table=11 /product="hydroxyethylthiazole kinase" /protein_id="NP_707990.1" /db_xref="GeneID:1023547" /translation="MQVDLLSSAQSAHALHLFHQHSPLVHCMTNDVVQTFTANTLLAL GASPAMVIETEEASQFAAIASALLINVGTLTQPRAQAMRAAVEQAKSSQTRWTLDPVA VGALDYRRHFCHELLSFKPAAIRGNASEIMALAGIANGGRGVDTTDAAANAIPAAQTL ARETGAIVVVTGEVDYVTDGHRIIGIHGGDPLMTKVVGTGCALSAVVAACCALPGDTL ENVASACHWMKQAGERAVARSEGPGSFVPHFLDALWQLTQEVQA" misc_feature complement(2190047..2190781) /gene="thiM" /locus_tag="SF2166" /note="Hydroxyethylthiazole kinase family; Region: HK; pfam02110" /db_xref="CDD:396609" misc_feature complement(order(2190605..2190610,2190614..2190616, 2190674..2190676,2190680..2190682,2190698..2190700, 2190710..2190712,2190728..2190730,2190734..2190736)) /gene="thiM" /locus_tag="SF2166" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238575" misc_feature complement(order(2190062..2190064,2190071..2190076, 2190080..2190088,2190092..2190097,2190233..2190244, 2190497..2190502,2190599..2190610,2190644..2190649, 2190656..2190661,2190665..2190676,2190698..2190700, 2190707..2190712,2190716..2190733)) /gene="thiM" /locus_tag="SF2166" /note="multimerization interface [polypeptide binding]; other site" /db_xref="CDD:238575" misc_feature complement(order(2190221..2190223,2190227..2190229, 2190245..2190247,2190299..2190301,2190305..2190307, 2190311..2190313,2190434..2190436,2190443..2190445, 2190449..2190451,2190527..2190529)) /gene="thiM" /locus_tag="SF2166" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238575" gene complement(2191046..2191318) /gene="yohL" /locus_tag="SF2167" /db_xref="GeneID:1025328" CDS complement(2191046..2191318) /gene="yohL" /locus_tag="SF2167" /note="Code: S; COG: COG1937" /codon_start=1 /transl_table=11 /product="transcriptional repressor RcnR" /protein_id="NP_707991.1" /db_xref="GeneID:1025328" /translation="MSHTIRDKQKLKARASKIQGQVVALKKMLDEPHECAAVLQQIAA IRGAVNGLMREVIKGHLTEHIVHQGDELKREEDLDVVLKVLDSYIK" misc_feature complement(2191049..2191318) /gene="yohL" /locus_tag="SF2167" /note="Ni(II)/Co(II)-binding transcriptional repressor RcnR; Region: PRK15039" /db_xref="CDD:184999" misc_feature complement(order(2191127..2191129,2191139..2191141, 2191214..2191216,2191310..2191312)) /gene="yohL" /locus_tag="SF2167" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(2191061..2191090,2191094..2191099, 2191124..2191126,2191133..2191141,2191145..2191153, 2191157..2191162,2191169..2191174,2191181..2191186, 2191190..2191195,2191199..2191207,2191211..2191219, 2191223..2191234,2191241..2191246,2191250..2191255, 2191262..2191264,2191271..2191276,2191283..2191288, 2191295..2191297)) /gene="yohL" /locus_tag="SF2167" /note="putative homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(2191061..2191072,2191079..2191081, 2191139..2191141,2191151..2191153,2191160..2191162, 2191169..2191174,2191181..2191186,2191190..2191195, 2191199..2191207,2191211..2191219,2191223..2191234, 2191241..2191246,2191250..2191255,2191262..2191264, 2191271..2191276,2191283..2191288,2191295..2191297)) /gene="yohL" /locus_tag="SF2167" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(2191073..2191078,2191082..2191090, 2191094..2191099,2191124..2191129,2191133..2191138, 2191145..2191150,2191157..2191159)) /gene="yohL" /locus_tag="SF2167" /note="putative homodimer-homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(2191079..2191081,2191139..2191141)) /gene="yohL" /locus_tag="SF2167" /note="putative allosteric switch controlling residues; other site" /db_xref="CDD:197388" gene 2191440..2192270 /gene="yohM" /locus_tag="SF2168" /pseudo /db_xref="GeneID:1025341" misc_feature 2191440..2192270 /gene="yohM" /locus_tag="SF2168" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788423 (275 aa). BLAST with identity of 98% in 277 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2192489..2192827 /gene="yohN" /locus_tag="SF2169" /db_xref="GeneID:1025340" CDS 2192489..2192827 /gene="yohN" /locus_tag="SF2169" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_707992.1" /db_xref="GeneID:1025340" /translation="MTIKNKMLLGVLLLVTSAAWAAPATAGSTNTSGISKYELSSFIA DFKHFKPGDTVPEMYRTDEYNIKQWQLRNLPAPDAGTHWTYMGGAYVLISDTDGKIIK AYDGEIFYHR" misc_feature <2192621..2192809 /gene="yohN" /locus_tag="SF2169" /note="Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism]; Region: RcnB; COG5455" /db_xref="CDD:444206" gene complement(2193127..2193942) /gene="yehA" /locus_tag="SF2170" /db_xref="GeneID:1027344" CDS complement(2193127..2193942) /gene="yehA" /locus_tag="SF2170" /codon_start=1 /transl_table=11 /product="type-1 fimbrial protein" /protein_id="NP_707993.1" /db_xref="GeneID:1027344" /translation="MEIRIMLFILMMMVMPVSYAACYSELSVQHNLVVQGNFALTQTQ IATYEHNFNDSSCVSTNTITPMSPSDIIVGLYNDTIKLNLHFEWTNKNNITLSNNQSS FTSGYSVTVTPAASNAKVNISAGGGGSVMINGVATLSSASSSTRGSAAVQFLLCLLGG KSWGACVNSYRNALAQNAGVYSFNLTLSYNPITTTCKQDDLLITLDSIPVLQLPATGN KATINSKKRDIILRCKNLLGQQNQTSRKMQVYLSSSDLLTNSNTILKGAEDNA" misc_feature complement(<2193130..2193942) /gene="yehA" /locus_tag="SF2170" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" gene complement(2193958..2196438) /gene="yehB" /locus_tag="SF2171" /db_xref="GeneID:1025335" CDS complement(2193958..2196438) /gene="yehB" /locus_tag="SF2171" /note="Code: N; COG: COG3188" /codon_start=1 /transl_table=11 /product="fimbrial outer membrane usher protein" /protein_id="NP_707994.2" /db_xref="GeneID:1025335" /translation="MLRMTPLASAIVALLLGIEAYAAEETFDTHFMIGGMKDQQVANI RLDDNQPLPGQYDIDIYVNKQWRGKYEIIVKDNPQETCLSREVIKRLGINSDNFASGK QCLTFEQLVQGGSYSWDIGVFRLDFSVPQAWVEELESGYVPPENWERGINAFYTSYYV SQYYSDYKASGNNKSTYVRFNSGLNLLEWQLHSDASFSKTNNNPGVWKSNTLYLERGF AQFLGTLRVGDMYTSSDIFDSVRFSGVRLFRDMQMLPNSKQNFTPRVQGIAQSNALVT IEQNGFVVYQKEVPPGPFAITDLQLAGGGADLDVSVKEADGSVTTYLVPYAAVPNMLQ PGVSKYDFAAGRSHIEGASKQSDFVQAGYQYGFNNLLTLYGGTMVANNYYAFTLGTGW NTRIGAISVDATKSHSKQDNGDVFDGQSYQIAYNKFVSQTSTRFGLAAWRYSSRDYRT FNDHVWANNKDNYRRDENDIYDIADYYQNDFGRKNSFSANMSQSLPEGWGSVSLSTLW RDYWGRSGSSKDYQLSYSNNWRRISYTLAASQAYGENHHEEKRFNIFISIPCDWGDDV TTPRRQIYMSNSTTFDDQGFASNNTGLSGTVGSRDQFNYGVNLSHQHQGNETTAGANL TWNAPVATVNGSYSQSSTYRQTGASVSGGIVAWSGGVNLANRLSETFAVMNAPGIKDA YVNGQKYRTTNRNGVVVYDGMTPYRENHLMLDVSQSDSEAELRGNRKIAAPYRGAVVL VNFDTDQRKPWFIKALRADGQPLTFGYEVNDIHGHNIGVVGQGSQLFIRTNEIPPSVN VAIDKQQGLSCTITFGKEIDESRNYICQ" misc_feature complement(2193961..2196438) /gene="yehB" /locus_tag="SF2171" /note="fimbrial outer membrane usher protein; Provisional; Region: PRK15217" /db_xref="CDD:185139" misc_feature complement(2196454..2197950) /note="Similar to Escherichia coli K12 chaperone gi: 1788428 (240 aa). BLAST with identity of 97% in 498 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element 2196891..2197654 /mobile_element_type="insertion sequence:IS1" gene 2197136..2197639 /gene="insB" /locus_tag="SF2173" /db_xref="GeneID:1025345" CDS 2197136..2197639 /gene="insB" /locus_tag="SF2173" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707996.2" /db_xref="GeneID:1025345" /translation="MPGNRPHYGRWPQHDFPPFKKLRPQSVTSRIQPGSDVIVCAEMD EQWGYVGAKSRQRWLFYAYDRLRKTVVAHVFGERTMATLGRLMSLLSPFDVVIWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 2197244..2197636 /gene="insB" /locus_tag="SF2173" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2197985..2198509) /gene="yehD" /locus_tag="SF2175" /db_xref="GeneID:1027325" CDS complement(2197985..2198509) /gene="yehD" /locus_tag="SF2175" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="fimbrial-like protein" /protein_id="NP_707997.1" /db_xref="GeneID:1027325" /translation="MKRSIIAAAVFSSFFMSAGVFAADVDTGTLTIKGNIAESPCKFE AGGDSVSINMPTVPTTVFEGKAKYSTYDDAVGVTSSMLKISCPKEVAGVKLSLITNDK ITGNDKAIASSNDTVGDNSDVLDVSAPFNIESYKTAEGQYAIPFKAKYLKLTDNSVQS GDVLSSLVMRVAQD" misc_feature complement(2197988..2198509) /gene="yehD" /locus_tag="SF2175" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" mobile_element complement(2198770..2199537) /mobile_element_type="insertion sequence:IS1" gene complement(2198785..2199180) /gene="insB" /locus_tag="SF2176" /db_xref="GeneID:1027338" CDS complement(2198785..2199180) /gene="insB" /locus_tag="SF2176" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_707998.1" /db_xref="GeneID:1027338" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(2198788..2199177) /gene="insB" /locus_tag="SF2176" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2199207..2199482) /gene="insA" /locus_tag="SF2177" /db_xref="GeneID:1025337" CDS complement(2199207..2199482) /gene="insA" /locus_tag="SF2177" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_707999.1" /db_xref="GeneID:1025337" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<2199210..2199461) /gene="insA" /locus_tag="SF2177" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(2199579..2199860) /locus_tag="SF2177a" /db_xref="GeneID:16608341" CDS complement(2199579..2199860) /locus_tag="SF2177a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439264.1" /db_xref="GeneID:16608341" /translation="MNKYWLSGIIFLAYGLASPAVSSETATLTINGRISPPTCSMAMV NSQPQQHCGQLTYNVDTRHQVSSPVKGVTTEVVVAGSDSKRRIVLNRYD" misc_feature complement(2199582..2199860) /locus_tag="SF2177a" /note="Protein of unknown function (DUF2574); Region: DUF2574; pfam10836" /db_xref="CDD:287772" gene complement(2200122..2201231) /gene="mrp" /locus_tag="SF2178" /db_xref="GeneID:1027323" CDS complement(2200122..2201231) /gene="mrp" /locus_tag="SF2178" /note="Code: D; COG: COG0489" /codon_start=1 /transl_table=11 /product="antiporter inner membrane protein" /protein_id="NP_708000.2" /db_xref="GeneID:1027323" /translation="MNEQSQAKSPEALRAMVAGTLANFQHPTLKHNLTTLKALHHVAW MDDTLHVELVMPFVWHSAFEELKEQCSAELLRITGAKAIDWKLSHNIATLKRVKNQPG INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGILDADIYGPSIPTMLGAENQ RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMAGKALMQMLQETLWPDLDY LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE NMSVHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISLREDLDKGTPTVISRP ESEFTAIYRQLADRVAAQLYWQGEVIPGEISFRAV" misc_feature complement(2200125..2201231) /gene="mrp" /locus_tag="SF2178" /note="iron-sulfur cluster carrier protein ApbC; Region: PRK11670" /db_xref="CDD:183270" gene 2201363..2203396 /gene="metG" /locus_tag="SF2179" /db_xref="GeneID:1025333" CDS 2201363..2203396 /gene="metG" /locus_tag="SF2179" /note="Code: J; COG: COG0143" /codon_start=1 /transl_table=11 /product="methionyl-tRNA synthetase" /protein_id="NP_708001.2" /db_xref="GeneID:1025333" /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSEE NRQLSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCE VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANK MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDSV SFDEYWKKDSTAELYHFIGKDIVYFHSLFWPAMLEGSNFRKPTNLFVHGYVTVNGAKM SKSRGTFIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN LASRNAGFINKRFDGVLASELADPELYKTFTDAAEVIGEAWESREFGKAVREIMALAD LANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPKLTERAEAFLN TELTWDGIQQPLLGHKVNPFKALYNRIDMKQVEALVEASKEEVKATTAPVTGPLADDP IQETITFDDFAKVDLRVALIENAEFVEGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ ALIGRHTIMVANLAPRKMRFGISEGMVMAAGPGGKDIFLLSPDAGAKPGHQVK" misc_feature 2201378..2203393 /gene="metG" /locus_tag="SF2179" /note="methionyl-tRNA synthetase; Reviewed; Region: metG; PRK00133" /db_xref="CDD:234655" misc_feature 2203537..2206403 /note="'Similar to Escherichia coli K12 molybdate metabolism regulator, first fragment gi: 1788433 (275 aa). BLAST with identity of 98% in 956 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'" mobile_element 2203728..2204991 /mobile_element_type="insertion sequence:IS600" gene 2203792..2204094 /locus_tag="SF2181" /db_xref="GeneID:1027327" CDS 2203792..2204094 /locus_tag="SF2181" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_708002.1" /db_xref="GeneID:1027327" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 2203792..2204064 /locus_tag="SF2181" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2204130..2204948 /locus_tag="SF2182" /db_xref="GeneID:1027321" CDS 2204130..2204948 /locus_tag="SF2182" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_708003.1" /db_xref="GeneID:1027321" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVGHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELMLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <2204130..2204921 /locus_tag="SF2182" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" mobile_element 2205551..2206318 /mobile_element_type="insertion sequence:IS1" gene 2205606..2205881 /gene="insA" /locus_tag="SF2183" /db_xref="GeneID:1025352" CDS 2205606..2205881 /gene="insA" /locus_tag="SF2183" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708004.1" /db_xref="GeneID:1025352" /translation="MASISIRCPSCSATEGVVRNGKSTAGHLRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 2205627..>2205878 /gene="insA" /locus_tag="SF2183" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 2205908..2206303 /gene="insB" /locus_tag="SF2184" /db_xref="GeneID:1025348" CDS 2205908..2206303 /gene="insB" /locus_tag="SF2184" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708005.1" /db_xref="GeneID:1025348" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 2205911..2206300 /gene="insB" /locus_tag="SF2184" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 2206517..2208460 /gene="molR_2" /locus_tag="SF2185" /pseudo /db_xref="GeneID:1023846" misc_feature 2206517..2208460 /gene="molR_2" /locus_tag="SF2185" /note="'Similar to Escherichia coli K12 molybdate metabolism regulator, second fragment 2 gi: 1788434 (646 aa). BLAST with identity of 96% in 648 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene 2209383..2213029 /gene="yehI" /locus_tag="SF2186" /pseudo /db_xref="GeneID:1027328" misc_feature 2209383..2213029 /gene="yehI" /locus_tag="SF2186" /note="Similar to Escherichia coli K12 regulator ref: NP_416621.1 (1210 aa). BLAST with identity of 81% in 1215 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2213090..2213497 /locus_tag="SF2187" /db_xref="GeneID:1025358" CDS 2213090..2213497 /locus_tag="SF2187" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708006.1" /db_xref="GeneID:1025358" /translation="MIVQKELVAIYDYEVPVPEDPFSFRLEIHKCSELFTGSVYRLER FRLRPTFHQRDREDVDPLINDALIYIRDEFIDEQKLRGESPEPVIVIFNCKLQNIFNQ QIELYTLDNSSRSTCNLKYDEYSFIKGGNGIPP" gene 2213973..2215127 /gene="yehL" /locus_tag="SF2188" /db_xref="GeneID:1027315" CDS 2213973..2215127 /gene="yehL" /locus_tag="SF2188" /note="Code: R; COG: COG0714" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708007.2" /db_xref="GeneID:1027315" /translation="MRQTFIARKISFISLIHFRDEYMSPQNNHLQRPPAAVLYADELA KLKQNDNAPCPPGWQLSLPAARAFILGDSAQNISRKVVISPSAVERMLVTLATGRGLM LVGEPGTAKSLLSELLATSISGDAGLTIQGGASTTEDQIKYGWNYALLINHGPSTEAL VPAPLYQGMRDGKIVRFEEITRTPLEVQDCLLGMLSDRVMTVPELTGEASQLYAREGF NIIATANTRDRGVNEMSAALKRRFDFETVFPIMDFAQELELVASASARLLAHSGIPHK VPDAVLELLVRTFRDLRANGEKKTSMDTLTAIMSTAEAVNVAHAVGVRAWFLANRAGE PADLVDCIAGTIVKDNEEDRARLRRYFEQRVATHKEAHWQAYYQARHRLP" misc_feature 2214270..2214698 /gene="yehL" /locus_tag="SF2188" /note="AAA domain (dynein-related subfamily); Region: AAA_5; pfam07728" /db_xref="CDD:400191" misc_feature 2214285..2214308 /gene="yehL" /locus_tag="SF2188" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(2214288..2214311,2214504..2214506,2214645..2214647) /gene="yehL" /locus_tag="SF2188" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 2214492..2214509 /gene="yehL" /locus_tag="SF2188" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 2214693..2214695 /gene="yehL" /locus_tag="SF2188" /note="arginine finger; other site" /db_xref="CDD:99707" gene 2215138..2217417 /gene="yehM" /locus_tag="SF2189" /db_xref="GeneID:1026712" CDS 2215138..2217417 /gene="yehM" /locus_tag="SF2189" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708008.2" /db_xref="GeneID:1026712" /translation="MSEPLIVGIRHHSPACARLVKSLIESQRPRYVLIEGPADFNDRV DELFLAHQLPVAIYSYCQYQDGAAPGRGAWTPFAEFSPEWQALQADRRIQAQTYFIDL PCWAQSEEEDDSPDTQEESQTLLLRATRMDNSDTLWDHLFEDESQQTALPSALAHYFA QLRGDSPGDALNRQREAFMARWIGWAMQQNNGDVLVVCGGWHAPALAKMWRECPQVIN TPELPSLADAVTGCYLTPYSEKRLDVLAGYLSGMPAPVWQNWCWQWGLQQAGEQLLKT VLTRLRQHKLPASTADMAAAHLHAMALAQLRGHTLPLRTDWLDAIAGSLIKEALNAPL PWSYRGVIHPDTDPILLTLIDTLAGDGFGKLAPSTPQPPLPKDVTCELERTAISLPAE LTLNRFNPNGLAQSQVLHRLAILEIPGIVRQQGSTLTLAGNGEERWKLTRPLSQHAAL IEAACFGATLLEAARHKLEADMLDAGGIGSITTCLSQAASAGLASFSQQLLEQLTLLI AQENQFAEMGQALEVLYALWRLDEISGMQGAQILQTTLCAAIDRTLWLCESNGRPDEK EFHAHLHSWQALCHILRDLHSGVQLPGVSLSAAVALLERHSQAIHVLALDRGATLGAL MRLEHPNASAEAALTMLAQLSPAQSGEALHGLLALARHQLACQPAFIAGFSSHLNQLS DADFTNALPDLRAAMAWLPPRERGTLAHQVLEHYQLAQLPVSALQMPLHCPPQAIAHH QQLEQQALASLQHWGVFHV" misc_feature 2215195..2217285 /gene="yehM" /locus_tag="SF2189" /note="Family of unknown function (DUF5682); Region: DUF5682; pfam18934" /db_xref="CDD:436841" gene 2217410..2218546 /gene="yehP" /locus_tag="SF2190" /db_xref="GeneID:1027345" CDS 2217410..2218546 /gene="yehP" /locus_tag="SF2190" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708009.2" /db_xref="GeneID:1027345" /translation="MSELNDLLTTRELQRWRLILGEAAETTLCGLDDNARQIDHALEW LYGRDPERLQRGERSSGLGGSNLTTPEWINSIHTLFPQQVIERLESDAVLRYGIEDVV TNLDVLERMQPSESLLRAVLHTKHLMNPEVLAAARRIVRQVVEEIMARLAKEVRQAFS GVRDRRRRSFIPLARNFDFKSTLRANLQHWHPQHGKLYIEFPRFNSRIKRQSEQWQLV LLVDQSGSMVDSVIHSAVMAACLWQLPGIRTHLVAFDTSVVDLTADVADPVELLMKVQ LGGGTNIASAMEYGRQLIEQPAKSVIILVSDFYEGGSSSLLTHQVKKCVQSGIKVLGL AALDSTATPCYDRDTAQALVNVGAQIAAMTPGELASWLAENLQS" misc_feature <2217554..>2217874 /gene="yehP" /locus_tag="SF2190" /note="beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase; Region: beta_Kdo_transferase; cl25364" /db_xref="CDD:474571" misc_feature 2217860..2218525 /gene="yehP" /locus_tag="SF2190" /note="VWA domain containing CoxE-like protein; Region: VWA_CoxE; pfam05762" /db_xref="CDD:399053" misc_feature order(2218073..2218075,2218079..2218081,2218085..2218087, 2218250..2218252,2218328..2218330) /gene="yehP" /locus_tag="SF2190" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:238739" gene 2218543..2220546 /gene="yehQ" /locus_tag="SF2191" /db_xref="GeneID:1025347" CDS 2218543..2220546 /gene="yehQ" /locus_tag="SF2191" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708010.2" /db_xref="GeneID:1025347" /translation="MNSLRPELLELTPQALTALSNAGFVKRSLKELENGNVPEISHEN SALIATFSDGVRTQLANGQALKEAQCTYGASGMCRHRVMLVLSYQRLCATAQPTGKEE EWDPAIWLEELATLPDATRKRAQALVAKSITIELFCAPGEIPSARLPMSDVRFYSRSS IRFARCDCIEGTLCEHVVLAVQAFVQAKAQQAELTHLIWQMRSEHVTSSDDPFASEEG KTCRQYVQQLSQALWLSGISQPLIHYEAAFSRAQQAAERCSWRWVSESLRQLRASVDA FHARASHYHAGECLRQLAALNSRLNCAQEMARSDSVGEVPPVPWRTVVGSGIAGEAKL DHLRLVSLGMRCWQDIEHYGLRIWFTDPDTGSILHLSRSWPRSEQEDSPAATRRLFSF QAGALAGGQIVSQAAKRSADGELLLATRNRLSSVVPLSPDAWQMLSAPLRQPGIVALR EYLRQRPPACIRPLNQVDNLFILPVAECISLGWDSSRQTLDAQVISGEGEDNLLTLSL PASASAPYAIERMAALLQQTDDPVCLVSGFVSFVDGQLTLEPQVMMTKTRAWALDAET APVVVSLPSASVLPVPSTAHQLLMRCQALLIQLLHNGWRYQEQSAINQAELLANDLTA VGFYRLAHVLAQFRNTESEARVEAMNNGVLLCEQLFPMLQQQG" misc_feature 2218564..2219919 /gene="yehQ" /locus_tag="SF2191" /note="Uncharacterized protein, contains SWIM-type Zn finger domain [Function unknown]; Region: SWIM; COG4715" /db_xref="CDD:443750" mobile_element complement(2220644..2221401) /mobile_element_type="insertion sequence:IS1" gene complement(2220679..2221152) /gene="insB" /locus_tag="SF2192" /db_xref="GeneID:1025356" CDS complement(2220679..2221152) /gene="insB" /locus_tag="SF2192" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708011.1" /db_xref="GeneID:1025356" /translation="MSRQCTHYGRWPQHGFTSLKKLTPQSVTSRIQPGTDVIVCAEMD EHWGYFCAKKRQRWLVDTYDKIRRTDVDHVFGERTLATLERLLSLLSAFEVAVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHSGII" misc_feature complement(2220682..2221044) /gene="insB" /locus_tag="SF2192" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 2221437..2221898 /gene="yehR" /locus_tag="SF2193" /db_xref="GeneID:1025357" CDS 2221437..2221898 /gene="yehR" /locus_tag="SF2193" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708012.2" /db_xref="GeneID:1025357" /translation="MKAFNKLFSLVVASVLVFSLAGCGDKEESKKFSANLNGTEIAIT YVYKGDKVLKQSSETKIQFASIGATTKEDAAKTLEPLSAKYKNIAGVEEKSTYTDTYA QENVTIDMEKVDFKALQGISGINVSAEDAKKGITMAQMELVMKAAGFKEVK" misc_feature 2221437..2221895 /gene="yehR" /locus_tag="SF2193" /note="Uncharacterized lipoprotein YehR, DUF1307 family [Function unknown]; Region: YehR; COG4808" /db_xref="CDD:443836" mobile_element complement(2222104..2222871) /mobile_element_type="insertion sequence:IS1" gene complement(2222119..2222514) /gene="insB" /locus_tag="SF2194" /db_xref="GeneID:1027333" CDS complement(2222119..2222514) /gene="insB" /locus_tag="SF2194" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708013.1" /db_xref="GeneID:1027333" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(2222122..2222511) /gene="insB" /locus_tag="SF2194" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2222541..2222816) /gene="insA" /locus_tag="SF2195" /db_xref="GeneID:1027329" CDS complement(2222541..2222816) /gene="insA" /locus_tag="SF2195" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708014.1" /db_xref="GeneID:1027329" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<2222544..2222795) /gene="insA" /locus_tag="SF2195" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(2222850..2223242) /gene="yehS" /locus_tag="SF2196" /db_xref="GeneID:1025368" CDS complement(2222850..2223242) /gene="yehS" /locus_tag="SF2196" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708015.1" /db_xref="GeneID:1025368" /translation="MACKRLLKWLFASSTPEGLMISNDILRSVRYILKANNNDLVRIL ALDNVEATAEQIAVWLRKEDEEGFQRCPDIVLSSFLNGLIYEKRGKDESAPALEPERR INNNIVLKKLRIAFSLKTDDILVMLPTY" misc_feature complement(<2222862..2223185) /gene="yehS" /locus_tag="SF2196" /note="Uncharacterized conserved protein YehS, DUF1456 family [Function unknown]; Region: YehS; COG4807" /db_xref="CDD:443835" gene complement(2223232..2223951) /gene="yehT" /locus_tag="SF2197" /db_xref="GeneID:1027504" CDS complement(2223232..2223951) /gene="yehT" /locus_tag="SF2197" /note="Code: T; COG: COG3279" /codon_start=1 /transl_table=11 /product="two-component response-regulatory protein YehT" /protein_id="NP_708016.2" /db_xref="GeneID:1027504" /translation="MIKVLIVDDEPLARENLRIFLQEQSDIEIVGECSNAVEGIGAVH KLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP IDEARLEKTLARLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMKDVAFVSSRM SGVYVTSHEGKEGFTELTLRTLESRTPLLRCHRQYLVNLAHLQEIRLEDNGQAELILR NGLTVPVSRRYLKSLKEAIGL" misc_feature complement(2223235..2223951) /gene="yehT" /locus_tag="SF2197" /note="two-component system response regulator BtsR; Region: PRK11697" /db_xref="CDD:236956" gene complement(2223948..2225633) /gene="yehU" /locus_tag="SF2198" /db_xref="GeneID:1027301" CDS complement(2223948..2225633) /gene="yehU" /locus_tag="SF2198" /note="Code: T; COG: COG3275" /codon_start=1 /transl_table=11 /product="2-component sensor protein" /protein_id="NP_708017.2" /db_xref="GeneID:1027301" /translation="MYDFNLVLLLLQQMCVFLVIAWLMSKTPLFIPLMQVTVRLPHKF LCYIVFSIFCIMGTWFGLHIDDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM GGMTALSCMISTIVEGLLGGLVHSILIRRGRTDKVFNPITAGAVTFVAEMVQMLIILA IARPYEDAVRLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAAS TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISST YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR LFSSINRTLGEGIAQLLSAQILAGQYERQKAMLTQSEIKLLHAQVNPHFLFNALNTIK AVIRRDSEQASQLVQYLSTFFRKNLKRPSEFVTLADEIEHVNAYLQIEKARFQSRLQV NIAIPQELSQQQLPAFTLQPIVENAIKHGTSQLLDTGRVAISARREGQHLMLEIEDNA GLYQPVTNASGLGMNLVDKRLRERFGDDYGISVACEPDSYTRITLRLPWRDEA" misc_feature complement(2225046..2225555) /gene="yehU" /locus_tag="SF2198" /note="5TMR of 5TMR-LYT; Region: 5TM-5TMR_LYT; pfam07694" /db_xref="CDD:429599" misc_feature complement(2224575..2224988) /gene="yehU" /locus_tag="SF2198" /note="GAF domain; Region: GAF_2; pfam13185" /db_xref="CDD:433019" misc_feature complement(2223954..>2224631) /gene="yehU" /locus_tag="SF2198" /note="Sensor histidine kinase, LytS/YehU family [Signal transduction mechanisms]; Region: LytS; COG3275" /db_xref="CDD:442506" mobile_element 2225774..2227200 /mobile_element_type="insertion sequence:IS4" gene 2225841..2227186 /locus_tag="SF2199" /pseudo /db_xref="GeneID:1025409" misc_feature 2225841..2227186 /locus_tag="SF2199" /note="Similar to Shigella flexneri conserved hypothetical protein ref: NP_085397.1 (448 aa). BLAST with identity of 77% in 448 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2227584..2227832 /locus_tag="SF2200" /db_xref="GeneID:1025354" CDS 2227584..2227832 /locus_tag="SF2200" /codon_start=1 /transl_table=11 /product="DNA-damage-inducible protein" /protein_id="NP_708018.1" /db_xref="GeneID:1025354" /translation="MRVEICIAKEKITKMPNGAVDALKEELTRRISKRYDDVEVIVKA TSNDGLSVTRTADKDSAKTFVQETLKDTWESADEWFVH" misc_feature 2227629..2227823 /locus_tag="SF2200" /note="DinI-like family; Region: DinI; cl11630" /db_xref="CDD:448327" gene complement(2227948..2228217) /locus_tag="SF2200a" /db_xref="GeneID:16608342" CDS complement(2227948..2228217) /locus_tag="SF2200a" /codon_start=1 /transl_table=11 /product="tail fiber assembly protein" /protein_id="YP_008439265.1" /db_xref="GeneID:16608342" /translation="MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQGFSEHIAPLQD AVDLEIATEEENSLLEAWKKYRVLLNRVDTSTAPDIEWPEEPDTM" misc_feature complement(2227957..>2228124) /locus_tag="SF2200a" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; cl17077" /db_xref="CDD:450149" gene 2228274..2228942 /locus_tag="SF2201" /db_xref="GeneID:1025349" CDS 2228274..2228942 /locus_tag="SF2201" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708019.1" /db_xref="GeneID:1025349" /translation="MVKLMKKNTDDGAKIYTPLTLKLYDWWVLGVSNRLAWGCPTKEH LLPHFLEHLGNNHLDIGVGTGFYLTHVPESSLISLMDLNEASLNAASTRAGESKIKHK ISHDVFEPYPAALHGQFDSISMFYLLHCLPGNISTKSCVIRNAAQALTDDGTLYGATI LGDGVVHNSFGQKLMRIYNQKGIFSNTKDSEEGLTHILSEHFENVKTKVQGTVVMFSA SGKK" misc_feature 2228445..2228738 /locus_tag="SF2201" /note="Methyltransferase domain; Region: Methyltransf_12; pfam08242" /db_xref="CDD:400515" gene 2229258..2232239 /gene="ipaH_6" /locus_tag="SF2202" /pseudo /db_xref="GeneID:1027313" misc_feature 2229258..2232239 /gene="ipaH_6" /locus_tag="SF2202" /note="Similar to Shigella flexneri IpaH9.8 gb: AAC23714.1 (545 aa). BLAST with identity of 77% in 994 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element 2229871..2231199 /mobile_element_type="insertion sequence:iso-IS10R" gene 2229978..2231186 /locus_tag="SF2203" /db_xref="GeneID:1027324" CDS 2229978..2231186 /locus_tag="SF2203" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_708020.1" /db_xref="GeneID:1027324" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature 2230092..2231147 /locus_tag="SF2203" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene complement(2232419..2232928) /locus_tag="SF2204" /db_xref="GeneID:1025355" CDS complement(2232419..2232928) /locus_tag="SF2204" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_708021.3" /db_xref="GeneID:1025355" /translation="MTFFFDDRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFT VTPEMLEAAREARRQEIEAWRTEQEAKPFTFEWNGRIWNAGPDSLGRLSPVVMLAKSV TAQTHMAWSDADNQQVKLSMPELEELAAAMVQAQVDRNDEIYRRQREMKEELSGLDDL ASIRAFDVE" misc_feature complement(2232434..2232757) /locus_tag="SF2204" /note="Domain of unknown function (DUF4376); Region: DUF4376; pfam14301" /db_xref="CDD:433852" gene complement(2232973..2234262) /locus_tag="SF2205" /db_xref="GeneID:1025343" CDS complement(2232973..2234262) /locus_tag="SF2205" /codon_start=1 /transl_table=11 /product="tail fiber protein" /protein_id="NP_708022.2" /db_xref="GeneID:1025343" /translation="MSVVISGALTDGAGIPMSGYHIILKSRVNTPEVVMNTVADVMAG NDGEYCFHARTGKYGVYLKQDWRNEYNVGDIAVYEDSKPGTLNDFLIAPDEGDLKPDV VKRFEEMVAQAQQSAGAAAGNAQQTAQDVAAAAGYARAAEQAKNDIDAALTGTLKTAN HLSETAAAGEKAQQKSRDNLGLKSAATMEAQSDIYDRTKGRLAIPGAFGFGCAFLPED VIRFDTKSDFLAWVRNALPGEYSVAGPYGIIIPDTRFEGVLSIRWTDARPETTEPRYR AKSLTFYGINGPIYHTRYCYWPISRLTGWVKINITTEDIIYRIVASSVRNRWGDPDIG GLIIAAYQGEADGDKVIRLVRGQSYRGSRLGPVGISVPSTPTGTYIVSPQFFITGCSE HSLPGSYCALSGVPDAHVSGAMPGLFIRTSRGMHRGN" misc_feature complement(2233873..2234262) /locus_tag="SF2205" /note="Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; Region: Peptidase_M14NE-CP-C_like; cl21470" /db_xref="CDD:473874" gene complement(2234286..2234774) /locus_tag="SF2206" /db_xref="GeneID:1025397" CDS complement(2234286..2234774) /locus_tag="SF2206" /codon_start=1 /transl_table=11 /product="tail fiber assembly protein" /protein_id="NP_708023.1" /db_xref="GeneID:1025397" /translation="MTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVG KDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVS ARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEG SS" misc_feature complement(2234298..2234717) /locus_tag="SF2206" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; pfam02413" /db_xref="CDD:426761" mobile_element 2235234..2236001 /mobile_element_type="insertion sequence:IS1" gene 2235289..2235564 /gene="insA" /locus_tag="SF2208" /db_xref="GeneID:1027330" CDS 2235289..2235564 /gene="insA" /locus_tag="SF2208" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708025.1" /db_xref="GeneID:1027330" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 2235310..>2235561 /gene="insA" /locus_tag="SF2208" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 2235591..2235986 /gene="insB" /locus_tag="SF2209" /db_xref="GeneID:1025351" CDS 2235591..2235986 /gene="insB" /locus_tag="SF2209" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708026.1" /db_xref="GeneID:1025351" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKAIGHYLNIKHYQ" misc_feature 2235594..2235983 /gene="insB" /locus_tag="SF2209" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" misc_feature 2236396..2238392 /note="Similar to Escherichia coli K12 transcriptional regulator gi: 1788448 (244 aa). BLAST with identity of 98% in 666 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element 2236631..2237936 /mobile_element_type="insertion sequence:IS629" gene 2236685..2237011 /locus_tag="SF2211" /db_xref="GeneID:1025386" CDS 2236685..2237011 /locus_tag="SF2211" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_708027.1" /db_xref="GeneID:1025386" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWGRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature 2236688..2236975 /locus_tag="SF2211" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2237011..2237894 /locus_tag="SF2212" /pseudogene="unknown" /db_xref="GeneID:1025393" gene complement(2238540..2239271) /gene="yehW" /locus_tag="SF2213" /db_xref="GeneID:1025365" CDS complement(2238540..2239271) /gene="yehW" /locus_tag="SF2213" /note="Code: E; COG: COG1174" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_708029.1" /db_xref="GeneID:1025365" /translation="MKMLRDPLFWLIALFVALIFWLPYSQPLFAALFPQLPRPVYQQE SFAALALAHFWLVGISSLFAVIIGTGAGIAVTRPWGAEFRPLVETIAAVGQTFPPVAV LAIAVPVIGFGLQPAIIALILYGVLPILQVTLAGLGAIDPSVTEVAKGMGMSRGQRLR KVELPLAAPVILAGVRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL LVALAAIIADRLFERLVQALSQHAK" misc_feature complement(2238555..2239148) /gene="yehW" /locus_tag="SF2213" /note="ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]; Region: OpuBB; COG1174" /db_xref="CDD:440787" gene complement(2239276..2240202) /gene="yehX" /locus_tag="SF2214" /db_xref="GeneID:1027306" CDS complement(2239276..2240202) /gene="yehX" /locus_tag="SF2214" /note="Code: E; COG: COG1125" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_708030.1" /db_xref="GeneID:1027306" /translation="MIEFSHVSKLFGAQKAVNDLNLNFQEGSFSVLIGTSGSGKSTTL KMINRLVEHDSGVIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWSVAQNIATVPQL QKWSRARIDDRIDELMALLGLESNLRERYPHQLSGGQQQRVGVARALAADPQVLLMDE PFGALDPVTRGALQQEMTRIHRLLGRTIVLVTHDIDEALRLAEHLVLMDHGEVVQQGN PLTMLTRPANDFVRQFFGRSELGVHLLSLRSVADYVRREERAEGEALAEEMTLRDALS LFVARGCEVLPVVNTQGQPCGTLHFQDLLVEA" misc_feature complement(2239288..2240202) /gene="yehX" /locus_tag="SF2214" /note="ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]; Region: OpuBA; COG1125" /db_xref="CDD:440742" gene complement(2240195..2241352) /gene="yehY" /locus_tag="SF2215" /db_xref="GeneID:1027311" CDS complement(2240195..2241352) /gene="yehY" /locus_tag="SF2215" /note="Code: E; COG: COG1174" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_708031.2" /db_xref="GeneID:1027311" /translation="MTYLRINPVLALLLLLTAIAAALPFISYAPNRLVSGEGLHLWQL WPQTIWMLVGVGCAWLTACFVPAKKGSIFALILAQFVFVLLVWGAGKAATQLAQNGSA LARTSLGRGFWLAAALALLACSDAIRRISTHPLWRWLLHMQIAIIPLWLLYSGTLNDL SLMKEYANRQDVFDDALAQHLTLLFGAVLPALVIGVPLGIWCYFSTARQGAIFSLLNV IQTVPSVALFGLLIAPLAALVTAFPWLGKLGIAGTGMTPALIALVLYALLPLVRGVVV GLNQIPRDVLESARAMGMSGAQRFLHVQLPLALPVFLRSLRVVMVQTVGMAVIAALIG AGGFGALVFQGLLSSAIDLVLLGVIPVIVLAVLTDALFDLLIALLKVKRND" misc_feature complement(2240204..2240875) /gene="yehY" /locus_tag="SF2215" /note="ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]; Region: OpuBB; COG1174" /db_xref="CDD:440787" gene complement(2241359..2242276) /gene="yehZ" /locus_tag="SF2216" /db_xref="GeneID:1027309" CDS complement(2241359..2242276) /gene="yehZ" /locus_tag="SF2216" /note="Code: M; COG: COG1732" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_708032.1" /db_xref="GeneID:1027309" /translation="MPLLKLWAGSLVMLAAVSLPLQAASPVKVGSKIDTEGALLGNII LQVLESHGVPTVNKVQLGTTPVGRGAITSDELDIYPEYTGNGAFFFKDENDAAWKNAG QGYEKVKKLDAEHNKLIWLTPAPANNTWTIAVRQDVAEKNKLTSLADLSRYLQEGGTF KLAASAEFIERADALPTFEKAYGFKLGQDQLLSLAGGDTAVTIKAAAQQTSGVNAAMA YGTDGPVAALGLQTLSDPQGVQPIYAPAPVVRESVLKEYPQMAQWLQPVFASLDAKTL QQLNASIAVEGLDAKKVAADYLKQKGWAK" misc_feature complement(2241380..2242201) /gene="yehZ" /locus_tag="SF2216" /note="Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold; Region: PBP2_OsmF; cd13616" /db_xref="CDD:270334" misc_feature complement(order(2241548..2241550,2241620..2241622, 2241887..2241889,2241893..2241895,2242022..2242024, 2242031..2242036,2242175..2242177,2242181..2242183)) /gene="yehZ" /locus_tag="SF2216" /note="putative chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270334" gene complement(2242528..2244825) /gene="bglX" /locus_tag="SF2217" /db_xref="GeneID:1027317" CDS complement(2242528..2244825) /gene="bglX" /locus_tag="SF2217" /note="Code: G; COG: COG1472" /codon_start=1 /transl_table=11 /product="beta-D-glucoside glucohydrolase" /protein_id="NP_708033.1" /db_xref="GeneID:1027317" /translation="MKWLCSVGIAVSLVLQPALADDLFGNHPLTPEARDAFVTDLLKK MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRAMQDQVMELSRL KIPLFFAYDVLHGQRTVFPISLGLASSFNLDAVKTVGRVSAYEAADDGLNMTWAPMVD VSRDPRWGRASEGFGEDTYLTSIMGKTMVEAMQGKSPADRYSVMTSVKHFAAYGAVEG GKEYNTVDMSPQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD QWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKSGINMSMSDEYYSKYLPGLIKS GKVTMAELDDAARHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR ESLVLLKNRLETLPLKKSATIAVVGPLADSKRDVMGSWSAAGVADQSVTVLTGIKNSV GENGKVLYAKGANVTSDKGIIDFLNQYEEAVKVDPRSPQEMIDEAVQTAKQSDVVVAV VGEAQGMAHEASSRTDITIPQGQRDLIAALKATGKPLVLVLMNGRPLALVKEDQQADA ILETWFAGTEGGNAIADVLFGDYNPSGKLPISFPRSVGQIPVYYSHLNTGRPYNADKP NKYTSRYFDEANGALYPFGYGLSYTTFTVSDVKLSAPTMKRDGKVTASVQVTNTGKRE GATVVQMYLQDVTASMSRPVKQLKGFEKITLKPGETQTVSFPIDIEALKFWNQQMKYD AEPGKFNVFIGTDSARVKKGEFELL" misc_feature complement(2242531..2244825) /gene="bglX" /locus_tag="SF2217" /note="beta-glucosidase BglX; Region: PRK15098" /db_xref="CDD:185053" gene 2245021..2246736 /gene="dld" /locus_tag="SF2218" /db_xref="GeneID:1026718" CDS 2245021..2246736 /gene="dld" /locus_tag="SF2218" /note="Code: C; COG: COG0277" /codon_start=1 /transl_table=11 /product="D-lactate dehydrogenase" /protein_id="NP_708034.1" /db_xref="GeneID:1026718" /translation="MSSMTTTDNKAFLNELARLVGHSHLLTDPAKTARYRKGFRSGQG DALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPNGNDYDRDIVIISTL RLDKLHVLGKGEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSG GSLVQRGPAYTEMSLFARIDEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRH DGRHAHDYDYVHRVRDIEADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFEAEKNQ QVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTFLMIDKLGT DKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL LLKMAGDGVGEAKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSD EVEDILALDIALRRNDTEWYEHLPPEIDSQLVHKLYYGHFMCYVFHQDYIVKKGVDVH ALKEQMLELLQQRGAQYPAEHNVGHLYKAPETLQKFYRENDPTNSMNPGIGKTSKRKN WQEVE" misc_feature 2245042..2246727 /gene="dld" /locus_tag="SF2218" /note="D-lactate dehydrogenase; Provisional; Region: PRK11183" /db_xref="CDD:236872" gene complement(2246774..2247706) /gene="pbpG" /locus_tag="SF2219" /db_xref="GeneID:1025374" CDS complement(2246774..2247706) /gene="pbpG" /locus_tag="SF2219" /note="Code: M; COG: COG1686" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 7" /protein_id="NP_708035.3" /db_xref="GeneID:1025374" /translation="MPKFRVSLFSLALMLAVPFAPQAVAKTAAATTASQPEIASGSAM IVDLNTNKVIYSNHPDLVRPIASISKLMTAMVVLDARLPLDEKLKVDISQTPEMKGVY SRVRLNSEISRKDMLLLALMSSENRAAASLAHHYPGGYKAFIKAMNAKAKSLGMNNTR FVEPTGLSVHNVSTARDLTKLLIASKQYPLIGQLSTTREDMATFSNPTYTLPFRNTNH LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW IETGKVMPVPAAALSYKKQKAAQMAAAGQTAQND" misc_feature complement(2246831..2247700) /gene="pbpG" /locus_tag="SF2219" /note="D-alanyl-D-alanine endopeptidase; Provisional; Region: pbpG; PRK11669" /db_xref="CDD:236952" gene complement(2247880..2248467) /gene="yohC" /locus_tag="SF2220" /db_xref="GeneID:1025380" CDS complement(2247880..2248467) /gene="yohC" /locus_tag="SF2220" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708036.2" /db_xref="GeneID:1025380" /translation="MSHVWGLFSHPDREMQVINRENETISHHYTHHVLLMAAIPVICA FIGTTQIGWNFGDGTILKLSWFTGLALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPS LAHCMVFAGYVATPLFLSGLVALYPLVWLCALVGTVALFYTGYLLYLGIPSFLNINKE EGLSFSSSTLAIGVLVLEVLLTLTVILWGYGYRLF" misc_feature complement(2247952..2248455) /gene="yohC" /locus_tag="SF2220" /note="Yip1 domain; Region: Yip1; pfam04893" /db_xref="CDD:461468" gene 2248601..2249215 /gene="yohD" /locus_tag="SF2221" /db_xref="GeneID:1027303" CDS 2248601..2249215 /gene="yohD" /locus_tag="SF2221" /note="Code: S; COG: COG0586" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708037.1" /db_xref="GeneID:1027303" /translation="MLTGNQRETNWPMDLNTLISQYGYAALVIGSLAEGETVTLLGGV AAHQGLLKFPLVVLSVALGGMIGDQVLYLCGRRFGGKLLRRFSKHQDKIERAQKLIQR HPYLFVIGTRFMYGFRVIGPTLIGASQLPPKIFLPLNILGAFAWALIFTTIGYAGGQV IAPWLHNLDQHLKHWVWLILVVVLVVGVRWWLKRRGKKKPDNQA" misc_feature 2248643..2249110 /gene="yohD" /locus_tag="SF2221" /note="Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family [Cell wall/membrane/envelope biogenesis]; Region: DedA; COG0586" /db_xref="CDD:440351" gene complement(2249332..2250093) /gene="yohF" /locus_tag="SF2222" /pseudo /db_xref="GeneID:1026567" misc_feature complement(2249332..2250093) /gene="yohF" /locus_tag="SF2222" /note="Similar to Escherichia coli K12 oxidoreductase gi: 1788459 (254 aa). BLAST with identity of 95% in 253 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2250146..2251582) /locus_tag="SF2223" /pseudogene="unknown" /db_xref="GeneID:1027320" gene complement(2252260..2253207) /gene="yohI" /locus_tag="SF2225" /db_xref="GeneID:1025384" CDS complement(2252260..2253207) /gene="yohI" /locus_tag="SF2225" /note="Code: R; COG: COG0042" /codon_start=1 /transl_table=11 /product="tRNA-dihydrouridine synthase C" /protein_id="NP_708040.2" /db_xref="GeneID:1025384" /translation="MRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPVK VFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGFWGVDLNCGCPSKT VNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQA GATELVVHGRTKEQGYRAEHIDWQAIGEIRQRLNIPVIANGEIWDWQSAQQCMAISGC DAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARIKQW LSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIEKL" misc_feature complement(2252272..2253207) /gene="yohI" /locus_tag="SF2225" /note="tRNA dihydrouridine(16) synthase DusC; Region: PRK10550" /db_xref="CDD:236713" misc_feature complement(order(2252533..2252538,2252602..2252604, 2252608..2252610,2252704..2252706,2252791..2252793, 2252923..2252925,2253004..2253006,2253109..2253111, 2253184..2253192)) /gene="yohI" /locus_tag="SF2225" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:239200" misc_feature complement(order(2252533..2252535,2252602..2252607, 2252695..2252700,2252704..2252709,2252785..2252787, 2252791..2252793,2252911..2252916,2253004..2253006)) /gene="yohI" /locus_tag="SF2225" /note="active site" /db_xref="CDD:239200" misc_feature complement(order(2252698..2252700,2252704..2252706, 2252785..2252787,2252914..2252916)) /gene="yohI" /locus_tag="SF2225" /note="catalytic residues [active]" /db_xref="CDD:239200" misc_feature complement(order(2252602..2252607,2252695..2252697, 2252707..2252709,2252791..2252793,2252911..2252913)) /gene="yohI" /locus_tag="SF2225" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:239200" gene 2253446..2253844 /gene="yohJ" /locus_tag="SF2226" /db_xref="GeneID:1025425" CDS 2253446..2253844 /gene="yohJ" /locus_tag="SF2226" /note="Code: R; COG: COG1380" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708041.2" /db_xref="GeneID:1025425" /translation="MSKTLNIIWQYLRAFVLIYACLYAGIFIASLLPVTIPGSIIGML ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAV STLVVFLVVSWSSQLVHGERKVVGQKGSEE" misc_feature 2253446..2253841 /gene="yohJ" /locus_tag="SF2226" /note="hypothetical protein; Provisional; Region: PRK01821" /db_xref="CDD:234983" gene 2253841..2254536 /gene="yohK" /locus_tag="SF2227" /db_xref="GeneID:1027293" CDS 2253841..2254536 /gene="yohK" /locus_tag="SF2227" /note="Code: M; COG: COG1346" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708042.1" /db_xref="GeneID:1027293" /translation="MMANIWWSLPLTLIVFFAARKLAARYKFPLLNPLLVAMVVIIPF LMLTGISYDSYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIITICFIGSVVA MVTGTSVALLMGASPEIAASILPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV FGHTLLNAMRIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVLCGIITSLI APFLFPIILAVMG" misc_feature 2253841..2254533 /gene="yohK" /locus_tag="SF2227" /note="hypothetical protein; Provisional; Region: PRK10711" /db_xref="CDD:182666" gene 2254666..2255550 /gene="cdd" /locus_tag="SF2228" /db_xref="GeneID:1025385" CDS 2254666..2255550 /gene="cdd" /locus_tag="SF2228" /note="Code: F; COG: COG0295" /codon_start=1 /transl_table=11 /product="cytidine deaminase" /protein_id="NP_708043.1" /db_xref="GeneID:1025385" /translation="MHPRFQTAFAQLADNLQSALEPILADKYFPALLTGEQVSSLKSA TGLDEDALAFALLPLAAACARTPLSNFNVGAIARGVSGTWYFGANMEFIGATMQQTVH AEQSAISHAWLSGEKALAAITVNYTPCGHCRQFMNELNSGLDLRIHLPGREAHALRDY LPDAFGPKDLEIKTLLMDEQDHGYALTGDALSQAAIAAANRSHMPYSKSPSGVALECK DGRIFSGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPLIQWDAT SATLKALGCHSIDRVLLA" misc_feature 2254666..2255547 /gene="cdd" /locus_tag="SF2228" /note="cytidine deaminase; Provisional; Region: PRK09027" /db_xref="CDD:181614" gene 2255700..2256419 /gene="sanA" /locus_tag="SF2229" /db_xref="GeneID:1026730" CDS 2255700..2256419 /gene="sanA" /locus_tag="SF2229" /note="Code: S; COG: COG2949" /codon_start=1 /transl_table=11 /product="vancomycin high temperature exclusion protein" /protein_id="NP_708044.2" /db_xref="GeneID:1026730" /translation="MLKRVFLSLLVLIGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY RQVGVVLGTAKYYRTGVINQYYRYRIQGAINAYNSGKVNYLLLSGDNALQSYNEPMTM RKDLIAAGVDPSDIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM GIQAQCYAVPSPKDMLSVRIREFAARFGALADLYIFKREPRFLGPLVPIPAMHQVPED AQGYPAVTPEQLLELQKKQGK" misc_feature 2255700..2256416 /gene="sanA" /locus_tag="SF2229" /note="outer membrane permeability protein SanA; Region: PRK10834" /db_xref="CDD:182765" misc_feature order(2256072..2256074,2256081..2256083,2256132..2256134, 2256144..2256146,2256153..2256155,2256243..2256245) /gene="sanA" /locus_tag="SF2229" /note="putative active site [active]" /db_xref="CDD:99750" gene 2256422..2256661 /locus_tag="SF2230" /db_xref="GeneID:1025372" CDS 2256422..2256661 /locus_tag="SF2230" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708045.1" /db_xref="GeneID:1025372" /translation="MDVQQFFVVAVFFLIPIFCFREAWKGWRAGAIDKRVKNAPEPVY VWRAKNPGLFFAYMVAYIGFGILSIGMIVYLIFYR" misc_feature 2256422..2256658 /locus_tag="SF2230" /note="Protein of unknown function (DUF2542); Region: DUF2542; pfam10808" /db_xref="CDD:151258" gene 2256855..2258093 /locus_tag="SF2231" /db_xref="GeneID:1025360" CDS 2256855..2258093 /locus_tag="SF2231" /note="Code: ER; COG: COG0493" /codon_start=1 /transl_table=11 /product="dihydropyrimidine dehydrogenase subunit A" /protein_id="NP_708046.1" /db_xref="GeneID:1025360" /translation="MPQQNYLDELTPAFTPLLAIKEASRCLLCHDAPCSQACPAQTDP GKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQSGCTRAGVDAPIDIGRLQ RFVTDFEQQTGMEIYQPGTKTLGKVAIIGAGPAGLQASVTLTNQGYDVTIYEKEAHPG GWLRNGIPQFRLPQSVLDAEIARIEKMGVTIKCNNEIGKTLTLEQLKAENRAVLVTVG LSSGSGLPLFEHSDVEIAVDFLQRVRQAQGDISIPQSALIIGGGDVAMDVASTLKVLG CQAVTCVAREELDEFPASEKEFASARELGVSIIDGFTPVAVEGNKVTFKHVRLSGELT MAADKIILAVGQHARLDAFAELEQQRNTIKTQNYQTRDPQVFAAGDIVEGDKTVVYAV KTGKEAAEAIHHYLEGACSC" misc_feature 2256861..2258090 /locus_tag="SF2231" /note="dihydropyrimidine dehydrogenase subunit A; Provisional; Region: PRK11749" /db_xref="CDD:236967" gene 2258081..2259266 /gene="yeiA" /locus_tag="SF2232" /pseudo /db_xref="GeneID:1025359" misc_feature 2258081..2259266 /gene="yeiA" /locus_tag="SF2232" /note="Similar to Escherichia coli K12 oxidoreductase gi: 1788469 (414 aa). BLAST with identity of 98% in 395 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2259302..2260312) /gene="mglC" /locus_tag="SF2233" /db_xref="GeneID:1025415" CDS complement(2259302..2260312) /gene="mglC" /locus_tag="SF2233" /note="Code: G; COG: COG1172" /codon_start=1 /transl_table=11 /product="methyl-galactoside ABC transporter permease" /protein_id="NP_708047.1" /db_xref="GeneID:1025415" /translation="MSALNKKSFLTYLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMDNANKVFPEMAT MPIALVILIVCAIGAVIGLINGLIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP ISGFDSGFSTFAQGFVALGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPE AAKISGVNVGLNLLMIYALSGVFYAFGGMLEAGRIGSATNNLGFMYELDAIAACVVGG VSFSGGVGTVIGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGAIIIFAVALDSLKYAR KK" misc_feature complement(2259305..2260312) /gene="mglC" /locus_tag="SF2233" /note="galactose/methyl galactoside ABC transporter permease MglC; Region: mglC; PRK09478" /db_xref="CDD:181892" misc_feature complement(2259605..2259661) /gene="mglC" /locus_tag="SF2233" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119321" gene complement(2260328..2261848) /gene="mglA" /locus_tag="SF2234" /db_xref="GeneID:1027318" CDS complement(2260328..2261848) /gene="mglA" /locus_tag="SF2234" /note="Code: G; COG: COG1129" /codon_start=1 /transl_table=11 /product="galactose/methyl galaxtoside transporter ATP-binding protein" /protein_id="NP_708048.1" /db_xref="GeneID:1027318" /translation="MVSSTTPSSGEYLLEMSGINKSFPGVKALDNVNLKVRPHSIHAL MGENGAGKSTLLKCLFGIYQKDSGTILFQGKEIDFHSAKEALENGISMVHQELNLVLQ RSVMDNMWLGRYPTKGMFVDQDKMYRETKAIFDELDIDIDPRARVGTLSVSQMQMIEI AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE VTVLRDGQWIATEPLAGLTMDKIIAMMVGRSLNQRFPDKENKPGEVILEVRNLTSLRQ PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKQINNHNANE AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDS MRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA ELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL" misc_feature complement(2260331..2261803) /gene="mglA" /locus_tag="SF2234" /note="galactose/methyl galaxtoside transporter ATP-binding protein; Provisional; Region: PRK10982" /db_xref="CDD:182880" gene complement(2261909..2262907) /gene="mglB" /locus_tag="SF2235" /db_xref="GeneID:1027319" CDS complement(2261909..2262907) /gene="mglB" /locus_tag="SF2235" /note="Code: G; COG: COG1879" /codon_start=1 /transl_table=11 /product="methyl-galactoside ABC transporter substrate-binding protein MglB" /protein_id="NP_708049.1" /db_xref="GeneID:1027319" /translation="MNKKVLTLSAVMASMLFGAAAHAADTRIGVTIYKYDDNFMSVVR KAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNK DGQIQFVLLKGEPGHPDAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAW LSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGALAGT VLNDANNQAKATFDLAKNLADGKGAADGTNWKIDNKVVRVPYVGVDKDNLAEFSKK" misc_feature complement(2261915..2262904) /gene="mglB" /locus_tag="SF2235" /note="galactose/glucose ABC transporter substrate-binding protein MglB; Region: PRK15395" /db_xref="CDD:185293" misc_feature complement(order(2262071..2262073,2262131..2262133, 2262206..2262208,2262290..2262292,2262365..2262367, 2262377..2262379,2262563..2262568,2262641..2262643, 2262788..2262793)) /gene="mglB" /locus_tag="SF2235" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380481" misc_feature complement(order(2262224..2262226,2262413..2262415, 2262425..2262427,2262431..2262433,2262437..2262439)) /gene="mglB" /locus_tag="SF2235" /note="Ca binding site [ion binding]; other site" /db_xref="CDD:380481" gene complement(2263187..2264227) /gene="galS" /locus_tag="SF2236" /db_xref="GeneID:1027298" CDS complement(2263187..2264227) /gene="galS" /locus_tag="SF2236" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator GalS" /protein_id="NP_708050.2" /db_xref="GeneID:1027298" /translation="MITIRDVARQAGVSVATVSRVLNNSTLVSADTREAVMKAVSELD YRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAE KERHAIEVLIRQRCNALIVHSKALSDDELAQFMDNIPGMVLINRVVPGYAHRCVCLDN LSGARMATRMLLNNGHQRIGYLSSSHGIEDDAMRKAGWMSALKEQDIIPPESWIGTGT PDMPGGEAAMVELLGRNLQLTAVFAYNDNMAAGALTALKDNGIAIPLHLSIIGFDDIP IARYTDPQLTTVRYPIASMAKLATELALQGAAGNIDPRASHCFMPTLVRRHSVATRQN AAAITNSTNQAM" misc_feature complement(2263190..2264227) /gene="galS" /locus_tag="SF2236" /note="HTH-type transcriptional regulator GalS; Region: PRK10401" /db_xref="CDD:236681" gene complement(2264369..2265445) /gene="yeiB" /locus_tag="SF2237" /db_xref="GeneID:1027253" CDS complement(2264369..2265445) /gene="yeiB" /locus_tag="SF2237" /note="Code: R; COG: COG2311" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708051.1" /db_xref="GeneID:1027253" /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYDAITP QDAWTWAFLDLIGQVKFLTLFALLFGAGLQMLLPRGRRWIQSRLTLLVLLGFIHGLLF WDGDILLAYGLVGLGVLLLLGLISDSQTSRAWTPDASAILYEKYWKLHGGVEAISNRA DGVGNSLLALGAQYGWQLAGMMLIGAALMRSGWLKGQFSLRHYRRTGFVLVAIGVTIN LPAIALQWQLDWAYRWCAFLLQMPRELSAPFQAIGYASLFYGFWPQLSRFKLVLAIAC VGRMALTNYLLQTLICTTLFYHLGLFMHFDRLELLAFVIPVWLANILFSVIWLRYFRQ GPVEWLWRQLTLRAAGPAISKTSR" misc_feature complement(2264390..2265427) /gene="yeiB" /locus_tag="SF2237" /note="hypothetical protein; Provisional; Region: PRK10835" /db_xref="CDD:182766" gene complement(2265462..2266130) /gene="folE" /locus_tag="SF2238" /db_xref="GeneID:1025439" CDS complement(2265462..2266130) /gene="folE" /locus_tag="SF2238" /note="Code: H; COG: COG0302" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase I" /protein_id="NP_708052.1" /db_xref="GeneID:1025439" /translation="MPSLSKEAALVHEALVARGLETPLRPPVHEMDNETRKSLIAGHM TEIMQLLNLDLADDSLMETPHRIAKMYVDEIFSGLDYANFPKITLIENKMKVDEMVTV RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL IALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRHEFLRAV RHHN" misc_feature complement(order(2265492..2265500,2265504..2265506, 2265513..2265518,2265531..2265539,2265543..2265551, 2265555..2265560,2265573..2265578,2265585..2265593, 2265630..2265632,2265660..2265662,2265669..2265671, 2265675..2265683,2265711..2265713,2265720..2265728, 2265738..2265740,2265744..2265749,2265768..2265770, 2265774..2265776,2265780..2265785,2265792..2265797, 2265807..2265809,2265813..2265815,2265819..2265830, 2265834..2265845,2265858..2265860,2265864..2265866, 2265894..2265896,2265909..2265911,2265921..2265923, 2265933..2265935,2265939..2265944,2265948..2265956, 2265960..2265962,2265966..2265968,2265972..2265974, 2265978..2265983,2265990..2265992,2266002..2266004, 2266011..2266016,2266023..2266028)) /gene="folE" /locus_tag="SF2238" /note="homodecamer interface [polypeptide binding]; other site" /db_xref="CDD:238349" misc_feature complement(2265471..2266013) /gene="folE" /locus_tag="SF2238" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA), GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:469697" misc_feature complement(order(2265573..2265575,2265585..2265587, 2265591..2265593,2265672..2265680,2265711..2265713, 2265723..2265728,2265732..2265734,2265789..2265794, 2265798..2265800,2265924..2265926,2265933..2265935)) /gene="folE" /locus_tag="SF2238" /note="active site" /db_xref="CDD:238349" misc_feature complement(order(2265585..2265587,2265591..2265593, 2265789..2265794,2265798..2265800)) /gene="folE" /locus_tag="SF2238" /note="putative catalytic site residues [active]" /db_xref="CDD:238349" misc_feature complement(order(2265585..2265587,2265789..2265794, 2265798..2265800)) /gene="folE" /locus_tag="SF2238" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:238349" misc_feature complement(order(2265504..2265518,2265522..2265530, 2265615..2265617,2265621..2265623,2265639..2265641, 2265648..2265650)) /gene="folE" /locus_tag="SF2238" /note="GTP-CH-I/GFRP interaction surface [active]" /db_xref="CDD:238349" gene 2266388..2267226 /gene="yeiG" /locus_tag="SF2239" /pseudo /db_xref="GeneID:1025423" misc_feature 2266388..2267226 /gene="yeiG" /locus_tag="SF2239" /note="Similar to Escherichia coli K12 esterase gi: 1788477 (279 aa). BLAST with identity of 98% in 280 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(2267258..2269249) /gene="cirA" /locus_tag="SF2240" /pseudo /db_xref="GeneID:1027304" misc_feature complement(2267258..2269249) /gene="cirA" /locus_tag="SF2240" /note="Similar to Escherichia coli K12 outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product gi: 1788478 (664 aa). BLAST with identity of 99% in 663 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2269541..2271010) /gene="lysP" /locus_tag="SF2241" /db_xref="GeneID:1027273" CDS complement(2269541..2271010) /gene="lysP" /locus_tag="SF2241" /note="Code: E; COG: COG0833" /codon_start=1 /transl_table=11 /product="lysine transporter" /protein_id="NP_708053.1" /db_xref="GeneID:1027273" /translation="MGSETKTTEAPGLRRELKARHLTMIAIGGSIGTGLFVASGATIS QAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY WYNWAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISVRGFGEAEYWFS LIKVTTVIVFIIVGVLMIIGIFKGAQPAGWSNWTIGEAPFAGGFAAMIGVAMIVGFSF QGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDV KDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS HYRFRRGYVLQGHDINDLPYRSGFFPLGPIFAFILCLIITLGQNYEAFLKDTIDWGGV AATYIGIPLFLIIWFGYKLIKGTHFVRYSEMKFPQNDKK" misc_feature complement(2269544..2271010) /gene="lysP" /locus_tag="SF2241" /note="lysine transporter; Provisional; Region: PRK10836" /db_xref="CDD:182767" gene complement(2271216..2272097) /gene="yeiE" /locus_tag="SF2242" /db_xref="GeneID:1025434" CDS complement(2271216..2272097) /gene="yeiE" /locus_tag="SF2242" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator" /protein_id="NP_708054.2" /db_xref="GeneID:1025434" /translation="MHITLRQLEVFAEVLKSGSTTQASVMLALSQSAVSAALTDLEGQ LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAVEIEQLFREDNGAIRIYASSTIGNY ILPAVIARYRHDYPQLPIELSVGNSQDVMQAVLDFRVDIGFIEGPCHSTEIISEPWLE DELVVFAAPTSPLARGPVTLEQLAAAPWILRERGSGTRDIVDYLLLSHLPKFEMAMEL GNSEAIKHAVRHGLGISCLSRRVIEDQLQAGTLSEVAVPLPRLMRTLWRIHHRQKHLS NALRRFLDYCDPANVPR" misc_feature complement(2271228..2272097) /gene="yeiE" /locus_tag="SF2242" /note="putative DNA-binding transcriptional regulator; Provisional; Region: PRK10837" /db_xref="CDD:182768" gene 2272196..2273245 /gene="yeiH" /locus_tag="SF2243" /db_xref="GeneID:1025420" CDS 2272196..2273245 /gene="yeiH" /locus_tag="SF2243" /note="Code: S; COG: COG2855" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708055.1" /db_xref="GeneID:1025420" /translation="MTNITLQKQHRTLWHFIPGLALSAVITGVALWGGSIPAVAGAGF SALTLAILLGMVLGNTIYPHIWKSCDGGVLFAKQYLLRLGIILYGFRLTFSQIADVGI SGIIIDVLTLSSTFLLACFLGQKVFGLDKHTSWLIGAGSSICGAAAVLATEPVVKAEA SKVTVAVATVVIFGTVAIFLYPAIYPLMSQWFSPETFGIYIGSTVHEVAQVVAAGHAI SPDAENAAVISKMLRVMMLAPFLILLAARVKQLSGANSGEKSKITIPWFAILFIVVAI FNSFHLLPQSVVNMLVTLDTFLLAMAMAALGLTTHVSALKKAGAKPLLMALVLFAWLI VGGGAINYVIQSVIA" misc_feature 2272235..2273239 /gene="yeiH" /locus_tag="SF2243" /note="conserved hypothetical integral membrane protein; Region: TIGR00698" /db_xref="CDD:129781" gene 2273319..2274176 /gene="nfo" /locus_tag="SF2244" /db_xref="GeneID:1025424" CDS 2273319..2274176 /gene="nfo" /locus_tag="SF2244" /note="Code: L; COG: COG0648" /codon_start=1 /transl_table=11 /product="endonuclease IV" /protein_id="NP_708056.1" /db_xref="GeneID:1025424" /translation="MKYIGAHVSAAGGLANAAIRAAEIDATAFALFTKNQRQWRAAPL TTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDEMQRCEQLG LSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEH LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARIVGFKYLRGMHLN DAKSTFGSRVDRHHSLGEGNIGHDAFRWIMQNDRFDGIPLILETINPDIWAEEIAWLK AQQTEKAVA" misc_feature 2273319..2274164 /gene="nfo" /locus_tag="SF2244" /note="endonuclease IV; Provisional; Region: PRK01060" /db_xref="CDD:179214" misc_feature order(2273337..2273339,2273412..2273414,2273532..2273534, 2274099..2274101,2274120..2274122) /gene="nfo" /locus_tag="SF2244" /note="AP (apurinic/apyrimidinic) site pocket [active]" /db_xref="CDD:237986" misc_feature order(2273421..2273435,2273532..2273537,2273541..2273543, 2273550..2273552) /gene="nfo" /locus_tag="SF2244" /note="DNA interaction; other site" /db_xref="CDD:237986" misc_feature order(2273523..2273525,2273643..2273645,2273751..2273753, 2273853..2273855,2273862..2273864,2273964..2273966, 2274003..2274005,2274009..2274011,2274099..2274101) /gene="nfo" /locus_tag="SF2244" /note="Metal-binding active site; metal-binding site" /db_xref="CDD:237986" gene 2274179..2275267 /gene="yeiI" /locus_tag="SF2245" /db_xref="GeneID:1026564" CDS 2274179..2275267 /gene="yeiI" /locus_tag="SF2245" /note="Code: G; COG: COG0524" /codon_start=1 /transl_table=11 /product="kinase" /protein_id="NP_708057.1" /db_xref="GeneID:1026564" /translation="MNNREKEILAILRRNPLIQQNEIADMLQISRSRVAAHIMDLMRK GRIKDKGYILTEQEYCVVVGTINMDIRGMADIHYPQAASHPGTIHCSAGGVGRNIAHN LALLGRDVHLLSVIGDDFYGEMLLEETRRAGVNVSGCVRLHGQSTSTYLAIANRDDQT VLAINDTHLLEQLTPQLLNGSRDLLRHAGVVLADCNLTAEALEWVFTLADEIPVFVDT VSEFKAGKIKHWLAHIHTLKPTLPELEILWGQAITSDADRNAAVNALHQQGVQQLFVY LPDESVYCSEKDGEQFLLTVPAHTTVDSFGADDGFMAGLVYSFLEGNNFRDSARFAMA CAAISRASGSLNNPTLSADNALSLVPMV" misc_feature 2274179..2275264 /gene="yeiI" /locus_tag="SF2245" /note="sugar kinase; Region: PRK09954" /db_xref="CDD:182165" gene complement(2275323..2276573) /gene="yeiJ" /locus_tag="SF2246" /db_xref="GeneID:1027296" CDS complement(2275323..2276573) /gene="yeiJ" /locus_tag="SF2246" /note="Code: F; COG: COG1972" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_708058.1" /db_xref="GeneID:1027296" /translation="MDVMRSVLGMVVLLAIAFLLSVNKKKISLRTVGAALVLQVVIGG IMLWLPPGRWVAEKVAFGVHKVMAYSDAGSAFIFGSLVGPKMDTLFDGAGFIFGFRVL PAIIFVTALVSILYYIGVMGILIRILGGIFQKALNISKIESFVAVTTIFLGQNEIPAI VKPFIDRLNRNELFTAICSGMASIAGSTMIGYAALGVPVEYLLAASLMAIPGGILFAR LLSPATESSQVSFNNLSFTETPPKSIIEADATGAMTGLKIAAGVATVVMAFVAIIALI NGIIGGVGGWFGFEHASLESILGYLLAPLAWVMGVDWSDANLAGSLIGQKLAINEFVA YLNFSPYLQTAGTLDAKTVAIISFALCGFANFGSIGVVVGAFSAVAPHRAPEIAQLGL RALAAATLSNLMSATIAGFFIGLA" misc_feature complement(2275332..2276573) /gene="yeiJ" /locus_tag="SF2246" /note="Nucleoside permease NupC [Nucleotide transport and metabolism]; Region: NupC; COG1972" /db_xref="CDD:441575" gene complement(2276673..2277614) /gene="rihB" /locus_tag="SF2247" /db_xref="GeneID:1027307" CDS complement(2276673..2277614) /gene="rihB" /locus_tag="SF2247" /note="Code: F; COG: COG1957" /codon_start=1 /transl_table=11 /product="ribonucleoside hydrolase 2" /protein_id="NP_708059.1" /db_xref="GeneID:1027307" /translation="MEKRKIILDCEPGHDDAIAMMMAAKHPAIDLLGITIVAGNQTLD KTLINGLNVCQKLEINVPVYAGMPQPIMRKQIVADNIHGETGLDGPVFEPLTRQAEST HAVKYIIDTLMASDGDITLVPVGPLSNIAVAMRMQPAILPKIREIVLMGGAYGTGNFT PSAEFNIFADPEAARVVFTSGVPLVMMGLDLTNQTVCTPDVIARMERVGGPAGELFSD IMNFTLKTQFEYYGLAGGPVHDATCIGYLINPDGIKTQDMYVEVDVNSGPCYGRTVCD ELGVLGKPANTKVGITIDTDWFWGLVEECVRGYIKTH" misc_feature complement(2276676..2277614) /gene="rihB" /locus_tag="SF2247" /note="ribosylpyrimidine nucleosidase; Region: rihB; PRK09955" /db_xref="CDD:182166" misc_feature complement(order(2276895..2276897,2277117..2277119, 2277123..2277125,2277141..2277143,2277243..2277245, 2277372..2277374,2277495..2277497,2277567..2277572, 2277582..2277584)) /gene="rihB" /locus_tag="SF2247" /note="active site" /db_xref="CDD:239117" misc_feature complement(order(2276808..2276810,2276817..2276822, 2276826..2276828,2277087..2277089,2277210..2277212, 2277402..2277404)) /gene="rihB" /locus_tag="SF2247" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:239117" gene 2277784..2278362 /gene="yeiL" /locus_tag="SF2248" /db_xref="GeneID:1025404" CDS 2277784..2278362 /gene="yeiL" /locus_tag="SF2248" /note="Code: T; COG: COG0664" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator YeiL" /protein_id="NP_708060.2" /db_xref="GeneID:1025404" /translation="MSESAFKDCFSTDVSADTRLFHFLARDYIVQEGQQPSWLFYLTR GRARLYATLANGRVSLIDFFAAPCFIGEIELIDKDHEPRAVQAIEECWCLALPMKHYR PLLLNDTLFLRKLCVTLSHKNYRNIVSLTQNQSFPLVNRLAAFILLSQEGDLYHEKHT QAAEYLGVSYRHLLYVLAQFIHDGLLIKRKDI" misc_feature 2277784..2278359 /gene="yeiL" /locus_tag="SF2248" /note="DNA-binding transcriptional activator YeiL; Provisional; Region: PRK10402" /db_xref="CDD:236682" gene complement(2278510..2279760) /gene="yeiM" /locus_tag="SF2249" /db_xref="GeneID:1026733" CDS complement(2278510..2279760) /gene="yeiM" /locus_tag="SF2249" /note="Code: F; COG: COG1972" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_708061.1" /db_xref="GeneID:1026733" /translation="MDIMRSVVGMVVLLAIAFLLSVNKKSISLRTVGAALLLQIAIGG IMLYFPPGKWAVEQAALGVHKVMSYSDAGSAFIFGSLVGPKMDVLFDGAGFIFAFRVL PAIIFVTALISLLYYIGVMGLLIRILGSIFQKALNISKIESFVAVTTIFLGQNEIPAI VKPFIDRVNRNELFTAICSGMASIAGSVMIGYAGMGVPIDYLLAASLMAIPGGILFAR ILSPATEPSQVTFENLSFSETPPKSFIEAAASGAMTGLKIAAGVATVVMAFVAIIALI NGIIGGIGGWFGFANASLESIFGYVLAPLAWIMGVDWSDANLAGSLIGQKLAINEFVA YLSFSPYLQTGGTLEVKTVAIISFALCGFANFGSIGVVVGAFSAISPKRAPEIAQLGL RALAAATLSNLMSATIAGFFIGLA" misc_feature complement(2278519..2279760) /gene="yeiM" /locus_tag="SF2249" /note="Nucleoside permease NupC [Nucleotide transport and metabolism]; Region: NupC; COG1972" /db_xref="CDD:441575" gene complement(2279854..2280792) /gene="yeiN" /locus_tag="SF2250" /db_xref="GeneID:1025430" CDS complement(2279854..2280792) /gene="yeiN" /locus_tag="SF2250" /note="Code: Q; COG: COG2313" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708062.1" /db_xref="GeneID:1025430" /translation="MSELKISPELLQISPEVQDALKNKKPVVALESTIISHGMPFPQN AQTAIEVEETIRKQGAVPATIAIIGGVMKVGLSKEKIELLGREGHNVTKVSRRDLPFV VAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQELANTNVTV VCAGAKSILDLGLTTEYLETFGVPLIGYQTKALPAFFCRTSSFDVSIRLDSASEIARA MAVKWQSGLNGGLVVANPIPEQFAMPEESINAAIDQAVAEAEEQGVIGKESTPFLLAR VAELTSGDSLKSNIQLVFNNAILASEIAKEYQRLAG" misc_feature complement(2279860..2280771) /gene="yeiN" /locus_tag="SF2250" /note="Pseudouridine-5'-phosphate glycosidase (pseudoU degradation) [Nucleotide transport and metabolism]; Region: PsuG; COG2313" /db_xref="CDD:441887" gene complement(2280780..2281721) /gene="yeiC" /locus_tag="SF2251" /db_xref="GeneID:1025398" CDS complement(2280780..2281721) /gene="yeiC" /locus_tag="SF2251" /note="Code: G; COG: COG0524" /codon_start=1 /transl_table=11 /product="pseudouridine kinase" /protein_id="NP_708063.1" /db_xref="GeneID:1025398" /translation="MREKDYVVIIGSANIDVAGYSHESLNYADSNPGKIKFTPGGVGR NIAQNLALLGNKAWLLSAVGSDFYGQSLLTQTNQSGVYVDKCLIVPGENTSSYLSLLD NTGEMLVAINDMNISNAITAEYLAQHREFIQRAKVIVADCNISEEALAWILDNAANVP VFVDPVSAWKCVKVRDRLNQNHTLKPNRLEAETLSGIALSGRDDVAKVAAWFHQHGLN RLVLSMGGDGVYYSDISGENGWSAPIKTNVINVTGAGDAMMAGLASCWVDGMPFAESV RFAQGCSSMALSCEYTNNPDLSIANVISLVENAECLN" misc_feature complement(2280783..2281721) /gene="yeiC" /locus_tag="SF2251" /note="pseudouridine kinase; Provisional; Region: PRK09850" /db_xref="CDD:182111" misc_feature complement(order(2280954..2280956,2280963..2280965, 2281587..2281589)) /gene="yeiC" /locus_tag="SF2251" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238916" misc_feature complement(order(2280873..2280875,2280882..2280884, 2280948..2280950,2280957..2280962,2280969..2280971, 2281053..2281055,2281161..2281163)) /gene="yeiC" /locus_tag="SF2251" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238916" gene complement(2282145..2283836) /gene="fruA" /locus_tag="SF2252" /db_xref="GeneID:1025440" CDS complement(2282145..2283836) /gene="fruA" /locus_tag="SF2252" /note="Code: G; COG: COG1299" /codon_start=1 /transl_table=11 /product="PTS system fructose-specific transporter subunit IIBC" /protein_id="NP_708064.1" /db_xref="GeneID:1025440" /translation="MKTLLIIDANLGQARAYMAKTLLGAAARKAKLEIIDNPNDAEMA IVLGDSIPNDSALNGKNVWLGDISRAVAHPELFLSEAKGHAKPYTAPVTATAPVAASG PKRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAAAD LVIVAADIEVDLAKFAGKPMYRTSTGLALKKTSQELDKAVAEATPYEPAGKAQTATTE GKKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKEPGTLAAALMQIGGGS AFALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYIAKLIS TQLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTANAV LLGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYGPMAAIMAAGMVPPLAMGLATMV ARRKFDKAQQEGGKAALVLGLCFISEGAIPFAARDPMRVLPCCIVGGALTGAISMAIG AKLMAPHGGLFVLLIPGAITPVLGYLVAIIAGTLVAGLAYAFLKRPEVDAVAKAA" misc_feature complement(2282148..2283836) /gene="fruA" /locus_tag="SF2252" /note="PTS system fructose-specific transporter subunits IIBC; Provisional; Region: PRK10712" /db_xref="CDD:236740" gene complement(2283853..2284791) /gene="fruK" /locus_tag="SF2253" /db_xref="GeneID:1025458" CDS complement(2283853..2284791) /gene="fruK" /locus_tag="SF2253" /note="Code: G; COG: COG1105" /codon_start=1 /transl_table=11 /product="1-phosphofructokinase" /protein_id="NP_708065.1" /db_xref="GeneID:1025458" /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE VTDFNFSGFEVTPADWERFVTDSLSWLGQFDMVCVSGSLPSGVSPEAFTDWMTRLRSQ CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIEAAHALREQGIA HVVISLGAEGALWVNASGEWIAKPPSVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN" misc_feature complement(2283856..2284791) /gene="fruK" /locus_tag="SF2253" /note="1-phosphofructokinase; Provisional; Region: fruK; PRK09513" /db_xref="CDD:181923" misc_feature complement(order(2284378..2284380,2284618..2284620, 2284624..2284626,2284642..2284644,2284654..2284656)) /gene="fruK" /locus_tag="SF2253" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:238570" misc_feature complement(order(2284027..2284029,2284033..2284035, 2284105..2284107,2284123..2284125,2284231..2284233, 2284237..2284239,2284291..2284293)) /gene="fruK" /locus_tag="SF2253" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:238570" gene complement(2284791..2285921) /gene="fruB" /locus_tag="SF2254" /db_xref="GeneID:1027280" CDS complement(2284791..2285921) /gene="fruB" /locus_tag="SF2254" /note="Code: GT; COG: COG1762" /codon_start=1 /transl_table=11 /product="bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein" /protein_id="NP_708066.1" /db_xref="GeneID:1027280" /translation="MFQLSVQDIHPGEKAGDKEEAIRQVAAALVQAGNVAEGYVNGML AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPEGVTWGDGQVAYVAIGIAAS SDKHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNEMLTLDIV ASDLLTLQALNAARLKEARAVDATFVTKAINEQPLNLGQGIWLSDSAEGNLRSAIAVS RAANAFDVDGETAAMLVSVAMNDDQPIAVLKRLADLLLDNKADRLLKADAATLLALLT SDDAPTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSDITVTNLDGTGKPANGRSL MKVVALGVKKGHRLRFTAQGADAEQALKAIGDAIAAGLGEGA" misc_feature complement(2284797..2285921) /gene="fruB" /locus_tag="SF2254" /note="fused PTS fructose transporter subunit IIA/HPr protein; Region: PRK11109" /db_xref="CDD:236849" gene 2286289..2287467 /gene="yeiO" /locus_tag="SF2255" /db_xref="GeneID:1025403" CDS 2286289..2287467 /gene="yeiO" /locus_tag="SF2255" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="sugar efflux transporter B" /protein_id="NP_708067.1" /db_xref="GeneID:1025403" /translation="MHNSPAVSSAKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD EVHARPAMVGFFFTGSAVIGILVSQFLAGRSDKRGDRKSLIVFCCLLGVLACTLFAWN RNYFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGP PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMQKELPLATGTVEAPRRNRRDT LLLFVICTLMWGSNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA KRLGKRFLMRVAAVGGVCFYAGMLMAHSPAILLGLQLLNAIFIGILGGIGMLYFQDLM PGQAGSATTLYTNTSRVGWIIAGSVAGIVAEIWNYHAVFWFAMVMIIATLFWVMTPTY " misc_feature 2286289..2287443 /gene="yeiO" /locus_tag="SF2255" /note="sugar efflux transporter SetB; Region: PRK15011" /db_xref="CDD:184973" mobile_element complement(2287446..2288213) /mobile_element_type="insertion sequence:IS1" gene complement(2287461..2287856) /gene="insB" /locus_tag="SF2256" /db_xref="GeneID:1026557" CDS complement(2287461..2287856) /gene="insB" /locus_tag="SF2256" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708068.1" /db_xref="GeneID:1026557" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(2287464..2287853) /gene="insB" /locus_tag="SF2256" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2287883..2288158) /gene="insA" /locus_tag="SF2257" /db_xref="GeneID:1027282" CDS complement(2287883..2288158) /gene="insA" /locus_tag="SF2257" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708069.1" /db_xref="GeneID:1027282" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMVMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<2287886..2288137) /gene="insA" /locus_tag="SF2257" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 2288652..2289224 /gene="yeiP" /locus_tag="SF2258" /db_xref="GeneID:1025392" CDS 2288652..2289224 /gene="yeiP" /locus_tag="SF2258" /note="Code: J; COG: COG0231" /codon_start=1 /transl_table=11 /product="elongation factor" /protein_id="NP_708070.5" /db_xref="GeneID:1025392" /translation="MPRANEIKKGMVLNYNGKLLLAKDIDIQSPTARGAATLYKMRFS DVRTGLKVEERFKGDDIVDTVTLTRRYVDFSYVDGNEYVFMDKEDYTPYTFTKDQIEE ELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETAPGIKGASASARNKPATLST GLVIQVPEYLSPGEKIRIHIEERRYMGRAD" misc_feature 2288652..2289221 /gene="yeiP" /locus_tag="SF2258" /note="elongation factor P; Provisional; Region: PRK04542" /db_xref="CDD:179863" gene 2289447..2290913 /gene="yeiQ" /locus_tag="SF2259" /db_xref="GeneID:1025394" CDS 2289447..2290913 /gene="yeiQ" /locus_tag="SF2259" /note="Code: G; COG: COG0246" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_708071.2" /db_xref="GeneID:1025394" /translation="MKTIASVTLPHHVHAPRYDRQQLQSRIVHFGFGAFHRAHQALLT DRVLNAQGGDWGICEISLFSGDQLMSQLRAQNHLYTVLEKGADGNQVIIVGAVHECLN AKLDSLAAIIEKFCEPQVAIVSLTITEKGYCIDPATGALDTSNPRIIHDLQTPEEPHS APGILVEALKRRRERSLTPFTVLSCDNIPDNGHVVKNAVLRMAEKRSPELAGWIKEHV SFPGTMVDRIVPAATDESLAEISQHLGVNDPCAISCEPFIQWVVEDNFIAGRPAWEVA GVQMVNDVLPWEEMKLRMLNGSHSFLAYLGYLSGFAYISDCMQDRVFRYAARTLMLDE QAPTLQIKDVDLTQYADKLIARFANPSLKHKTWQIAMDGSQKLPQRMLAGIRIHLGRE TDWSLLALGVAGWMRYVSGVDDAGNAIDVRDPLSDKIRELVAGSSSEQRVTALLSLRE VFGDDLPDNPHFVQAIEQAWQQIVQFGAHQALLNTLKI" misc_feature 2289447..2290892 /gene="yeiQ" /locus_tag="SF2259" /note="Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]; Region: MtlD; COG0246" /db_xref="CDD:440016" gene 2291031..2292017 /gene="yeiR" /locus_tag="SF2260" /db_xref="GeneID:1027285" CDS 2291031..2292017 /gene="yeiR" /locus_tag="SF2260" /note="Code: R; COG: COG0523" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708072.1" /db_xref="GeneID:1027285" /translation="MTRTNLITGFLGSGKTTSILHLLAHKDPNEKWAVLVNEFGEVGI DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL DLLTAPVYEPWIDLRATLCILDPRLLLDEKSASNENFRDQLAAADIIVANKSDRATPE SEQALQRWWQQNGGDRQLIHSEHGKVDGHLLDLPRRNLAELPASAAHSHQHVVKKGLA ALSLPEHQRWRRSLNSGQGYQACGWIFDADTVFDTIGILEWARLAPVERVKGVLRIPE GLVRINRQGDDLHIETQNVAPPDSRIELISSSEADWNALQSALLKLRLATTA" misc_feature 2291031..2292002 /gene="yeiR" /locus_tag="SF2260" /note="Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family [General function prediction only]; Region: YejR; COG0523" /db_xref="CDD:440289" gene 2292056..2292769 /locus_tag="SF2261" /db_xref="GeneID:1027299" CDS 2292056..2292769 /locus_tag="SF2261" /note="Code: I; COG: COG0671" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708073.2" /db_xref="GeneID:1027299" /translation="MIKNLPQIVLLNIVGPALFLSWYIPVNHGFWLPIDADIFYFFNQ KLVESKAFLWLVALTNNRAFDGCSLLAMGMLMLSFWLKENAPGRRRIVIMGLVMLLTA VVLNQLGQALIPVKRASPTLTFTDINRVSELLSVPTKDASRDSFPGDHGMMLLIFSAF MWRYFGKVAGLIALIIFMVFAFPRVMIGAHWFTDIIVGSMTVILIGLPWVLLTPLSDR LITFFDKSLPGKNKHFQNK" misc_feature 2292347..2292685 /locus_tag="SF2261" /note="Acid phosphatase homologues; Region: acidPPc; smart00014" /db_xref="CDD:214471" misc_feature order(2292383..2292385,2292404..2292406,2292497..2292505, 2292605..2292607,2292623..2292625,2292635..2292637) /locus_tag="SF2261" /note="active site" /db_xref="CDD:238813" gene 2293181..2293747 /gene="spr" /locus_tag="SF2262" /db_xref="GeneID:1027294" CDS 2293181..2293747 /gene="spr" /locus_tag="SF2262" /note="Code: M; COG: COG0791" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_708074.1" /db_xref="GeneID:1027294" /translation="MVKSQPILRYILRGIPAIAVAVLLSACSANNTAKNMHPETRAVG SETSSLQASQDEFENLVRNVDVKSRIMDQYADWKGVRYRLGGSTKKGIDCSGFVQRTF REQFGLELPRSTYEQQEMGKSVSRSNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHAST SSGVIISSMNEPYWKKRYNEARRVLSRS" misc_feature 2293184..2293744 /gene="spr" /locus_tag="SF2262" /note="bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase; Region: spr; PRK10838" /db_xref="CDD:236773" gene 2293928..2295484 /gene="rtn" /locus_tag="SF2263" /db_xref="GeneID:1025444" CDS 2293928..2295484 /gene="rtn" /locus_tag="SF2263" /codon_start=1 /transl_table=11 /product="phage resistance protein" /protein_id="NP_708075.1" /db_xref="GeneID:1025444" /translation="MFIRAPNSGRKLLLTCIVAGVMIAILVSCLQFLVAWHKHEVKYD TLIIDVQKYLDTYFADLKSTTDRLQPLTLDTCQQANPELTARAAFSMNVRTFVLVKDK KTFCSSATGEMDIPLNELIPALDINKNVDMAILPGTPMVPNKPAIVIWYRNPLLKNSG VFAALNLNLTPSLFYSSRQEDYDGVALIIGNTALSTFSSRLMNVNELTDMPVRETKIA GIPLTVRLYADDWTWNDVWYAFLLGGMSGTVVGLLCYYLMSVRMRPDREIMTAIKREQ FYVAYQPVVDTQALRVTGLEVLLRWRHPVAGEIPPDAFINFAESQKMIVPLTQHLFEL IARDAAELEKVLPVGVKFGINIAPDHLHSESFKADIQKLLTSLPAHHFQIVLEITERD MLKEQEATQLFAWLHSVGVEIAIDDFGTGHSALIYLERFTLDYLKIDRGFINAIGTET ITSPVLDAVLTLAKRLNMLTVTEGVETPEQARWLSERGVNFMQGYWISHPLPLDDFVR WLKKPYTPQW" misc_feature 2293928..2295481 /gene="rtn" /locus_tag="SF2263" /note="cyclic di-GMP phosphodiesterase; Region: PRK10551" /db_xref="CDD:182541" gene 2295566..2297380 /gene="yejA" /locus_tag="SF2264" /db_xref="GeneID:1025457" CDS 2295566..2297380 /gene="yejA" /locus_tag="SF2264" /note="Code: EP; COG: COG0747" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708076.2" /db_xref="GeneID:1025457" /translation="MIVRILLLFIALFTFGAQAQAIKESYTFAVLGEPRYAFNFNHFD YVNPAAPKGGQITLSALGTFDNFNRYALRGNPGARTEQLYDTLFTTSDDEPGSYYPLI AESARYADDYSWVEVAINPRARFHDGSPITARDVEFTFQKFLTEGVPQFRLVYKGTTV KAIAPLTVRIELAKPGKEDMLSLFSLPVFPEKYWKDHKLSDPLATPPLASGPYHVTSW KMGQNIVYSRVKDYWAANLPVNRGRWNFDTIRYDYYLDDNVAFEAFKAGAFDLRMEND AKNWATRYTGKNFDKKYIIKDEQKNESAQDTRWLAFNIQRAVFSDRRVREAITLAFDF EWMNKALFYNAWSRTNSYFQNTEYAARNYPDAAELVLLAPMKKDLPPEVFTQIYQPPV SKGDGYDRDNLLKADKLLNEAGWVLKGQQRVNATTGQPLSFELLLPASSNSQWVLPFQ HSLQRLGINMDIRKVDNSQITNRMRNRDYDMMPRLWRAMPWPSSDLQISWSSEYINST YNAPGVQSPVIDSLINQIIAAQGNKEKLLPLGRALDRVLTWNYYMLPMWYMAEDRLAW WDKFSQPAVRPVYSLGIDTWWYDVNKAAKLPSARQQGE" misc_feature 2295680..2297284 /gene="yejA" /locus_tag="SF2264" /note="Methanobactin MbnE, a periplasmic binding protein of the TonB-dependent transport system, and similar proteins; Region: MbnE-like; cd08497" /db_xref="CDD:173862" gene 2297381..2298475 /gene="yejB" /locus_tag="SF2265" /db_xref="GeneID:1027283" CDS 2297381..2298475 /gene="yejB" /locus_tag="SF2265" /note="Code: EP; COG: COG0601" /codon_start=1 /transl_table=11 /product="microcin C ABC transporter permease YejB" /protein_id="NP_708077.1" /db_xref="GeneID:1027283" /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF GNAGVLPGAGGEGVRASHAQTGVGNISDSNYRGGRGLDPEVIAEITHRYGFDKPIHER YFKMLWDYIRFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV YNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYFDLFPLRGLVSANFDSLPWY QKITDYLWHITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWK HMFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL YIFTLIGLLLNIVSDISYTLVDPRIDFEGR" misc_feature 2297381..2298472 /gene="yejB" /locus_tag="SF2265" /note="microcin C ABC transporter permease YejB; Provisional; Region: PRK15133" /db_xref="CDD:185087" misc_feature order(2297825..2297830,2297837..2297842,2297855..2297857, 2297888..2297899,2297903..2297932,2297939..2297944, 2297948..2297950,2298092..2298097,2298101..2298103, 2298107..2298109,2298116..2298121,2298125..2298127, 2298137..2298142,2298149..2298151,2298200..2298202, 2298242..2298247,2298254..2298256,2298281..2298292, 2298299..2298304,2298341..2298346,2298380..2298385, 2298392..2298397,2298401..2298406,2298413..2298418, 2298425..2298430) /gene="yejB" /locus_tag="SF2265" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(2297906..2297950,2298281..2298298) /gene="yejB" /locus_tag="SF2265" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(2297948..2297950,2298077..2298079,2298299..2298301, 2298335..2298337,2298344..2298346,2298380..2298382) /gene="yejB" /locus_tag="SF2265" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(2298152..2298190,2298206..2298211,2298221..2298223) /gene="yejB" /locus_tag="SF2265" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 2298475..2299500 /gene="yejE" /locus_tag="SF2266" /db_xref="GeneID:1025442" CDS 2298475..2299500 /gene="yejE" /locus_tag="SF2266" /note="Code: EP; COG: COG1173" /codon_start=1 /transl_table=11 /product="microcin C ABC transporter permease" /protein_id="NP_708078.1" /db_xref="GeneID:1025442" /translation="MSRLSPVNQARWARFRHNRRGYWSLWIFLVLFGLSLCSELIAND KPLLVRYDGSWYFPLLKNYSESDFGGPLASQADYQDPWLKQRLENNGWVLWAPIRFGA TSINFATDKPFPSPPSRQNWLGTDANGGDVLARILYGTRISVLFGLMLTLCSSVMGVL AGALQGYYGGKVDLWGQRFIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL VGVVRAEFLRTRNFDYIRAAQALGVSDRSIILRHMLPNAMVATLTFLPFILCSSITTL TSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGITAFLSVAILLSLLIFIGEAVRDA FDPNKAV" misc_feature 2298475..2299497 /gene="yejE" /locus_tag="SF2266" /note="microcin C ABC transporter permease; Provisional; Region: PRK15021" /db_xref="CDD:184982" gene 2299502..2301091 /gene="yejF" /locus_tag="SF2267" /db_xref="GeneID:1027286" CDS 2299502..2301091 /gene="yejF" /locus_tag="SF2267" /note="Code: R; COG: COG1123" /codon_start=1 /transl_table=11 /product="microcin C ABC transporter ATP-binding protein YejF" /protein_id="NP_708079.2" /db_xref="GeneID:1027286" /translation="MTQTLLAIENLSVGFRHQQTVRTVVNDVSLQIEAGETLALVGES GSGKSVTALSILRLLPSPPVEYLSGDIRFHGESLLHASDQTLRGVRGNKIAMIFQEPM VSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGG ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQGELNMGMLFITHNLS IVRKLAHRVAVMQNGRCVEQNNAATLFASPTHPYTQKLLNSEPSGDPVPLPEPASTLL DVEQLQVAFPIRKGILKRIVDHNVVVKNISFTLRAGETLGLVGESGSGKSTTGLALLR LITSQGSIVFDGQPLQDLNRRQLLPTRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH QPTLSAAQREQQVIAVMHEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILD EPTSSLDKTVQAQILTLLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG PCARVFATPQQEYTRQLLALS" misc_feature 2299502..2301088 /gene="yejF" /locus_tag="SF2267" /note="microcin C ABC transporter ATP-binding protein YejF; Provisional; Region: PRK15134" /db_xref="CDD:237917" gene complement(2301095..2301439) /gene="yejG" /locus_tag="SF2268" /db_xref="GeneID:1025441" CDS complement(2301095..2301439) /gene="yejG" /locus_tag="SF2268" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708080.1" /db_xref="GeneID:1025441" /translation="MTSLQLSIVHRLPQNYRWSAGFAGSKVEPIPQNGPCGDNSLVAL KLLSPDGDNAWSVMYKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV AIAEPFSNYNPF" misc_feature complement(2301098..2301439) /gene="yejG" /locus_tag="SF2268" /note="hypothetical protein; Provisional; Region: PRK11835" /db_xref="CDD:183333" gene complement(2301772..2302962) /gene="bcr" /locus_tag="SF2269" /db_xref="GeneID:1025454" CDS complement(2301772..2302962) /gene="bcr" /locus_tag="SF2269" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="bicyclomycin/multidrug efflux system" /protein_id="NP_708081.1" /db_xref="GeneID:1025454" /translation="MTTRQHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVSA GSTQMTLSTYILGFALGQLIYGPMADSFGRKPVVLGGTLVFAAAAVACALAQTIDQLI VMRFFHGLAAAAASVVINALMRDIYPKEEFSRMMSFVMLVTTIALLMAPIVGGWVLVW LSWHYIFWILALAAILASAMIFFLIKETLPPERRQPFHIRTTIGNFAALFRHKRVLSY MLASGFSFAGMFSFLSAGPFVYIEINHVAPENFGYYFALNIVFLFVMTIFNSRFVRRI GALNMFRSGLWIQFIMAAWMVISAPLGLGFWSLVVGVAAFVGCVSMVSSNAMAVILDE FPHMAGTASSLAGTFRFGIGAIVGALLSLATFNSAWPMIWSIAFCATSSILFCLYASR PKKR" misc_feature complement(2301775..2302905) /gene="bcr" /locus_tag="SF2269" /note="Bcr/CflA family multidrug efflux MFS transporter; Region: PRK11102" /db_xref="CDD:182964" gene complement(2302990..2303685) /gene="rsuA" /locus_tag="SF2270" /db_xref="GeneID:1024633" CDS complement(2302990..2303685) /gene="rsuA" /locus_tag="SF2270" /note="Code: J; COG: COG1187" /codon_start=1 /transl_table=11 /product="16S rRNA pseudouridine(516) synthase" /protein_id="NP_708082.1" /db_xref="GeneID:1024633" /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE HDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLD IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL TKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE YRPLTEEEIASVV" misc_feature complement(2302996..2303685) /gene="rsuA" /locus_tag="SF2270" /note="16S rRNA pseudouridine(516) synthase RsuA; Region: PRK10839" /db_xref="CDD:236774" gene 2303835..2305595 /gene="yejH" /locus_tag="SF2271" /db_xref="GeneID:1026753" CDS 2303835..2305595 /gene="yejH" /locus_tag="SF2271" /note="Code: L; COG: COG1061" /codon_start=1 /transl_table=11 /product="ATP-dependent helicase" /protein_id="NP_708083.1" /db_xref="GeneID:1026753" /translation="MIFTLRPYQQEAVDATLNHFRRHKTPAVIVLPTGAGKSLVIAEL ARLARGRVLVLAHVKELVAQNHAKYQALGLEADIFAAGLKRKESHGKVVFGSVQSVAR NLDAFQGEFSLLIVDECHRIGDDEESQYQQILTHLTKVNPHLRLLGLTATPFRLGKGW IYQFHYHGMVRGDEKALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS NGLFSEADLNRELKKQQRITPHIISQIMEFAEKRKGVMIFAATVEHAKEIVGLLPAED AALITGDNPGAERDVLIEDFKAQRFRYLVNVAVLTTGFDAPHVDLIAILRPTESVSLY QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGTPKGKSDNVPVQVFCPACGFANT FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE CDTVLVDPDDMLKAALRLKDALVLRCSGMSLQHGHDEKGEWLKITYYDEDGADVSERF RLQTPAQRTAFEQLFIRPHTRTPGIPLRWITAADILAQQALLRHPDFVVARMKGQYWQ VREKVFDYEGRFRRAHELRG" misc_feature 2303841..2305439 /gene="yejH" /locus_tag="SF2271" /note="Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair]; Region: SSL2; COG1061" /db_xref="CDD:440681" gene 2305720..2306004 /gene="rplY" /locus_tag="SF2272" /db_xref="GeneID:1027312" CDS 2305720..2306004 /gene="rplY" /locus_tag="SF2272" /note="Code: J; COG: COG1825" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L25" /protein_id="NP_708084.2" /db_xref="GeneID:1027312" /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGKEAPLAIELDH DKVMNMQAKAEFYSEVLTIVVDGKEIKVKAQDVQRHPYKPKLQHIDFVRA" misc_feature 2305720..2306001 /gene="rplY" /locus_tag="SF2272" /note="50S ribosomal protein L25; Reviewed; Region: PRK05943" /db_xref="CDD:180318" misc_feature order(2305744..2305746,2305768..2305776,2305780..2305782, 2305810..2305818,2305828..2305830,2305942..2305947, 2305951..2305953,2305981..2305983,2305987..2305989, 2305993..2305995) /gene="rplY" /locus_tag="SF2272" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:198379" misc_feature order(2305816..2305818,2305894..2305896,2305930..2305932, 2305942..2305944,2305993..2305998) /gene="rplY" /locus_tag="SF2272" /note="CTC domain interface [polypeptide binding]; other site" /db_xref="CDD:198379" misc_feature order(2305936..2305941,2305948..2305950,2305969..2305971, 2305993..2305995) /gene="rplY" /locus_tag="SF2272" /note="L16 interface [polypeptide binding]; other site" /db_xref="CDD:198379" gene complement(2306143..2307150) /gene="yejK" /locus_tag="SF2273" /db_xref="GeneID:1025426" CDS complement(2306143..2307150) /gene="yejK" /locus_tag="SF2273" /note="Code: R; COG: COG3081" /codon_start=1 /transl_table=11 /product="nucleoid-associated protein NdpA" /protein_id="NP_708085.1" /db_xref="GeneID:1025426" /translation="MSLDINHIALHQLIKRDEQNLELVLRDSLLEPTETVVEMVAELH RVYSAKNKAYGLFSEESELAQTLRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGF VLFCHYRYLAVEYLLVAVLSNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN PESTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE RQNVRQQVYSYCNEQLQAGEEIELESLSKELAGVSEVSFTEFAAEKGYELEESFPADR STLRQLTKFAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG N" misc_feature complement(2306149..2307150) /gene="yejK" /locus_tag="SF2273" /note="nucleoid-associated protein NdpA; Validated; Region: PRK00378" /db_xref="CDD:178993" gene 2307332..2307559 /gene="yejL" /locus_tag="SF2274" /db_xref="GeneID:1027288" CDS 2307332..2307559 /gene="yejL" /locus_tag="SF2274" /note="Code: S; COG: COG3082" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708086.1" /db_xref="GeneID:1027288" /translation="MPQISRYSNEQVEQLLAELLNVLEKHKAPTDLSLMVLGNMVTNL INTSIAPAQRQAIANSFASALQSSINEDKAH" misc_feature 2307332..2307556 /gene="yejL" /locus_tag="SF2274" /note="hypothetical protein; Provisional; Region: PRK13689" /db_xref="CDD:237471" gene 2307579..2309339 /gene="yejM" /locus_tag="SF2275" /db_xref="GeneID:1025450" CDS 2307579..2309339 /gene="yejM" /locus_tag="SF2275" /note="Code: R; COG: COG3083" /codon_start=1 /transl_table=11 /product="sulfatase" /protein_id="NP_708087.1" /db_xref="GeneID:1025450" /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLSLVIGSRYLFIADWP TTLAGRIYSYVSIIGHFSFLVFATYLLILFPLTFIVGSQRLMRFLSVILATAGMTLLL IDSEVFTRFHLHLNPIVWQLVINPDENEMARDWQLMFISVPVILLLELVFATWSWQKL RSLTRRRRFARPLAAFLFIAFIASHVVYIWADANFYRPITMQRANLPLSYPMTARRFL EKHGLLDAQEYQRRLIEQGNPDAVSVQYPLSELRYRDMGTGQNVLLITVDGLNYSRFE KQMPALAGFAEQNISFTRHMSSGNTTDNGIFGLFYGISPSYMDGILSTRTPAALITAL NQQGYQLGLFSSDGFTSPLYRQALLSDFSMPSVRTQSDDQTATQWINWLGRYAQEDNR WFSWVSFNGTNIDDSNQQAFARKYSRAAGNVDDQIKRVLNALRDSGKLDNTVVIITAG RGIPLSEEEETFDWSHGHLQVPLVIHWPGTPAQRINALTDHTDLMTTLMQRLLHVSTP ASEYSQGQDLFNPQRRHYWVTAADNDTLAITTPKKTLVLNNNGKYRTYNLRGERVKDE KPQLSLLLQVLTDEKRFIAN" misc_feature 2307579..2309336 /gene="yejM" /locus_tag="SF2275" /note="LPS biosynthesis-modulating metalloenzyme YejM; Region: LapC_YejM_PbgA; NF038282" /db_xref="CDD:468449" gene 2309414..2309491 /locus_tag="SF4486" /db_xref="GeneID:3161802" tRNA 2309414..2309491 /locus_tag="SF4486" /product="tRNA-Pro" /codon_recognized="CCC" /db_xref="GeneID:3161802" gene complement(2309589..2312099) /gene="yejO" /locus_tag="SF2276" /db_xref="GeneID:1025455" CDS complement(2309589..2312099) /gene="yejO" /locus_tag="SF2276" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_708088.2" /db_xref="GeneID:1025455" /translation="MASTVEYGETVDGVILEKDIQLVYGTANNTKINPGGEQHIKEFG VSSNTEINGGYQYIEMNGTAEYSVLNDGYQIVQMGGAANQTTLNNGVLQVYGPANDTT IKGGRLIVEKDGGAVFAAIEKGGLLEVKEGGFALAVDQKTGGAIKTTTRAMEVFGTNR LGQFDIKNGIANNMLLENGGSLRVEENDFAYNTTVDSGGLLEVMDGGTATGVDKKAGG KLIVSTNALEVSGTNSKGQFSIKDGVSKNYELDDGSGLIVMEDTQAIDTILDEHATMQ SLGKDTGTKVQANAVYDLGRSDQNGSITYSSKAISENMVINNGRANVWAGTMVNVSVR GNDGILEVMKPQINYAPAMLVGKVVVSEGASFRTHGAVDTSKADVSLENSAWTIIADI TTTNQNTRLNLANLAMSGANVIMMAEPVTRSSVTASAENFITLTTNTLSGNGNFYMRT DMANHQSDQLNVTGQATGDFKIFVTDTGASPAAGDSLTLVTTGGGDAAFTLGNAGGVV DIGTYEYTLLDNGNHSWSLAENRAQITPSTTDVLNMAAAQPLVFDAELDTVRERLGSV KGVSYDTVMWSSAINTRNNVTTDAGAGFEQTLTGLTLGIDSRFSREESSTIRGLFFGY SHSDIGFDRGGKGNIDSYTLGAYAGWEHQNGAYVDGVVKVDRFANTIHGKMSNGATAF GDYNSNGAGAHVESGFRWVDGLWSVRPYLAFTGFTTDGQDYTLSNGMRADVGNTRILR AEAGTAVSYHMDLQNGTTLEPWLKAAVRQEYADSNQVKVNDDGKFNNDVAGTSGVYQA GIRSSFTPTLSGHLSVSYGNGAGVESPWNTQAGVVWTF" misc_feature complement(2310672..2311916) /gene="yejO" /locus_tag="SF2276" /note="hypothetical protein; Provisional; Region: PRK09945" /db_xref="CDD:137602" misc_feature complement(2310498..2311277) /gene="yejO" /locus_tag="SF2276" /note="Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343" /db_xref="CDD:238653" misc_feature complement(2309592..2310818) /gene="yejO" /locus_tag="SF2276" /note="outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414" /db_xref="CDD:273608" gene 2312500..2313147 /gene="narP" /locus_tag="SF2277" /db_xref="GeneID:1025461" CDS 2312500..2313147 /gene="narP" /locus_tag="SF2277" /note="Code: TK; COG: COG2197" /codon_start=1 /transl_table=11 /product="transcriptional regulator NarP" /protein_id="NP_708089.2" /db_xref="GeneID:1025461" /translation="MPEATPFQVMIVDDHPLMRRGVRQLLELDPGFEVVAEAGEGASA IDLANRLDIDVILLDLNMKGMSGLDTLNALRRDGVTAQIIILTVSDASSDVFALIDAG ADGYLLKDSDPEVLLEAIRTGAKGSKVFSERVNQYLREREMFGAEEDPFSVLTERELD VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQQRGAQ" misc_feature 2312500..2313144 /gene="narP" /locus_tag="SF2277" /note="nitrate/nitrite response regulator protein NarP; Region: PRK10403" /db_xref="CDD:182431" gene complement(2313358..2314410) /gene="ccmH" /locus_tag="SF2278" /db_xref="GeneID:1025443" CDS complement(2313358..2314410) /gene="ccmH" /locus_tag="SF2278" /note="Code: R; COG: COG0457" /codon_start=1 /transl_table=11 /product="heme lyase subunit" /protein_id="NP_708090.1" /db_xref="GeneID:1025443" /translation="MRFLLGVLMLMISGSALATIDVLQFKDEAQEQQFRQLTEELRCP KCQNNSIADSNSMIATDLRQKVYELMQEGKSKKEIVDYMVARYGNFVTYDPPLTPLTV LLWVLPVVAIGIGGWVIYARSRRRVRVVPEAFPEQSVPEGKRAGYVVYLPGIVVALIV AGVSYYQTGNYQQVKIWQQATAQAPALLDRALDPKADPLNEEEMSRLALGMRTQLQKN PGDIEGWIMLGRVGMALGNASIATDAYATAYRLDPKNSDAALGYAEALTRSSDPNDNR LGGELLRQLVRTDHSNIRVLSMYAFNAFEQQRFGEAVAAWEMMLKLLPANDTRRAVIE RSIAQAMQHLSPQESK" misc_feature complement(2314048..2314410) /gene="ccmH" /locus_tag="SF2278" /note="Cytochrome c-type biogenesis protein CcmH/NrfF [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Region: NrfF; COG3088" /db_xref="CDD:442322" misc_feature complement(order(2314273..2314275,2314282..2314284)) /gene="ccmH" /locus_tag="SF2278" /note="putative catalytic site [active]" /db_xref="CDD:319866" misc_feature complement(2313391..2313795) /gene="ccmH" /locus_tag="SF2278" /note="Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Region: NrfG; COG4235" /db_xref="CDD:443378" misc_feature complement(2313661..2313747) /gene="ccmH" /locus_tag="SF2278" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(order(2313496..2313498,2313505..2313510, 2313517..2313522,2313529..2313531,2313607..2313612, 2313616..2313621,2313628..2313633,2313640..2313642, 2313712..2313714,2313718..2313723,2313730..2313735, 2313742..2313744)) /gene="ccmH" /locus_tag="SF2278" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(2313547..2313648) /gene="ccmH" /locus_tag="SF2278" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(2313448..2313534) /gene="ccmH" /locus_tag="SF2278" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene complement(2314407..2314964) /gene="dsbE" /locus_tag="SF2279" /db_xref="GeneID:1027269" CDS complement(2314407..2314964) /gene="dsbE" /locus_tag="SF2279" /note="Code: OC; COG: COG0526" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein DsbE" /protein_id="NP_708091.1" /db_xref="GeneID:1027269" /translation="MKRKVLLIPLIIFLAIAAALLWQLARNAEGDDPTNLESALIGKP VPKFRLESLDNPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG MNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAPETFLIDGNGIIRYRHA GDLNPRVWEEEIKPLWEKYSKEAAQ" misc_feature complement(2314410..2314964) /gene="dsbE" /locus_tag="SF2279" /note="thiol:disulfide interchange protein DsbE; Provisional; Region: PRK15412" /db_xref="CDD:185310" misc_feature complement(order(2314716..2314718,2314725..2314727)) /gene="dsbE" /locus_tag="SF2279" /note="catalytic residues [active]" /db_xref="CDD:239308" misc_feature complement(2314578..2314646) /gene="dsbE" /locus_tag="SF2279" /note="central insert [active]" /db_xref="CDD:239308" gene complement(2314961..2316904) /gene="ccmF" /locus_tag="SF2280" /db_xref="GeneID:1027261" CDS complement(2314961..2316904) /gene="ccmF" /locus_tag="SF2280" /note="Code: O; COG: COG1138" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein" /protein_id="NP_708092.1" /db_xref="GeneID:1027261" /translation="MMPEIGNGLLCLALGIALLLSVYPLWGVARGDARMMASSRLFAW LLFMSVAGAFLVLVNAFVVNDFTVTYVASNSNTQLPVWYRVAATWGAHEGSLLLWVLL MSGWTFAVAIFSQRIPLDIVARVLAIMGMVSVGFLLFILFTSNPFSRTLPNFPIEGRD LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIASLLSGRLDSTYARFTRPWTLAAWIF LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLVGTALMHSLAVTEQRASFKAWT LLLAISAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVIGGSLLLFAARG HKVRSRVNNALWSRESLLLANNVLLVAAMLVVLLGTLLPLVHKQLGLGSISIGEPFFN TMFTWLMVPFALLLGVGPLVRWGRDRPRKIRNLLIIAFISTLVLSLLLPWLFESKVVA MTVLGLAMACWIAVLATAEAALRISRGTKTTFSYWGMVAAHLGLAVTIVGIAFSQNYS VERDVRMKSGDSVDIHEYRFTFRDVKEVTGPNWRGGVATIGVTREGKPETVLYAEKRY YNTAGSMMTEAAIDGGITRDLYAALGEELENGAWAVRLYYKPFVRWIWAGGLMMALGG LLCLFDPRYRKRVSPQKTAPEAV" misc_feature complement(2314970..2316901) /gene="ccmF" /locus_tag="SF2280" /note="Cytochrome c biogenesis protein CcmF [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Region: CcmF; COG1138" /db_xref="CDD:440753" gene complement(2316901..2317380) /gene="ccmE" /locus_tag="SF2281" /db_xref="GeneID:1025436" CDS complement(2316901..2317380) /gene="ccmE" /locus_tag="SF2281" /note="Code: O; COG: COG2332" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein CcmE" /protein_id="NP_708093.1" /db_xref="GeneID:1025436" /translation="MNIRRKNRLWIACAVLAGLALTIGLVLYALRSNIDLFYTPGEIL YGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDL FREGQGVVVQGELEKGNHILAKEVLAKHDENYTPPEVEKAMEANHRRPASVYKDPAS" misc_feature complement(2316904..2317380) /gene="ccmE" /locus_tag="SF2281" /note="cytochrome c maturation protein CcmE; Region: PRK13150" /db_xref="CDD:139376" gene complement(2317377..2317586) /gene="ccmD" /locus_tag="SF2282" /db_xref="GeneID:1027291" CDS complement(2317377..2317586) /gene="ccmD" /locus_tag="SF2282" /note="Code: N; COG: COG3114" /codon_start=1 /transl_table=11 /product="heme exporter protein C" /protein_id="NP_708094.1" /db_xref="GeneID:1027291" /translation="MTPAFASWNEFFAMGGYAFFVWLAVVMTVIPLVVLVVHSVMQHR AILRGVAQQRAREARLRAAQQQEAA" misc_feature complement(<2317428..2317580) /gene="ccmD" /locus_tag="SF2282" /note="Heme exporter protein D [Intracellular trafficking, secretion, and vesicular transport]; Region: CcmD; COG3114" /db_xref="CDD:442348" gene complement(2317583..2318320) /gene="ccmC" /locus_tag="SF2283" /db_xref="GeneID:1027271" CDS complement(2317583..2318320) /gene="ccmC" /locus_tag="SF2283" /note="Code: O; COG: COG0755" /codon_start=1 /transl_table=11 /product="heme exporter protein C" /protein_id="NP_708095.2" /db_xref="GeneID:1027271" /translation="MWKTLHQLAIPPRLYQICGWFIPWLAIASVVVLTVGWIWGFGFA PADYQQGNSYRIIYLHVPAAIWSMGIYASMAVAAFIGLVWQMKMANLAVAAMAPIGAV FTFIALVTGSAWGKPMWGTWWVWDARLTSELVLLFLYVGVIALWHAFDDRRLAGRAAG ILVLIGVVNLPIIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWSIFGFLLLSATLTL MRMRNLILLMEKRRPWVSELILKRGRK" misc_feature complement(2317646..2318188) /gene="ccmC" /locus_tag="SF2283" /note="heme exporter protein CcmC; Region: ccmC; TIGR01191" /db_xref="CDD:273492" gene complement(2318362..2319024) /gene="ccmB" /locus_tag="SF2284" /db_xref="GeneID:1025449" CDS complement(2318362..2319024) /gene="ccmB" /locus_tag="SF2284" /note="cytochrome c-type biogenesis protein CcmB; Code: O; COG: COG2386" /codon_start=1 /transl_table=11 /product="heme exporter protein B" /protein_id="NP_708096.1" /db_xref="GeneID:1025449" /translation="MMFWRIFRLELRVAFRHSAEIANPLWFFLIVITLFPLSIGPEPQ LLARIAPGIIWVAALLSSLLALERLFRDDLQDGSLEQLMLLPLPLPAVVLAKVMAHWM VTGLPLLILSPLVAMLLGMDVYGWQVMALTLLLGTPTLGFLGAPGVALTVGLKRGGVL LSILVLPLTIPLLIFATAAMDAASMHLPVEGYLAILGALLAGTATLSPFATAAALRIS IQ" misc_feature complement(2318377..2319009) /gene="ccmB" /locus_tag="SF2284" /note="heme exporter protein CcmB; Region: ccmB; TIGR01190" /db_xref="CDD:200083" gene complement(2319021..2319644) /gene="ccmA" /locus_tag="SF2285" /db_xref="GeneID:1027260" CDS complement(2319021..2319644) /gene="ccmA" /locus_tag="SF2285" /note="Code: Q; COG: COG1131" /codon_start=1 /transl_table=11 /product="cytochrome c biogenesis protein CcmA" /protein_id="NP_708097.1" /db_xref="GeneID:1027260" /translation="MGMLEARELLCERDERTLFSGLSFTLNAGEWVQITGSNGAGKTT LLRLLTGLSRPDAGEVLWQGQPLHQVRDSYHQTLLWIGHQPGIKTRLTALENLHFYHR DGDAAQCLEALAQAGLAGFEDIPVNQLSAGQQRRVALARLWLTRATLWILDEPFTAID VNGVDRLTQRMAQHTEQGGIVILTTHQPLNVAESKIRRISLTQTRAA" misc_feature complement(2319036..2319638) /gene="ccmA" /locus_tag="SF2285" /note="cytochrome c biogenesis heme-transporting ATPase CcmA; Region: PRK13538" /db_xref="CDD:184125" gene complement(2319657..2320259) /gene="napC" /locus_tag="SF2286" /db_xref="GeneID:1026844" CDS complement(2319657..2320259) /gene="napC" /locus_tag="SF2286" /note="Code: C; COG: COG3005" /codon_start=1 /transl_table=11 /product="cytochrome c-type protein NapC" /protein_id="NP_708098.1" /db_xref="GeneID:1026844" /translation="MGNSDRKPGLIKRLWKWWRTPSHLALGTLLLIGFVGGIVFWGGF NTGMEKANTEEFCISCHEMRNTVYQEYMDSVHYNNRSGVRATCPDCHVPHEFVPKMIR KLKASKELYGKIFGVIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFEYMDTTA QKSVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMREVEPGF" misc_feature complement(2319660..2320259) /gene="napC" /locus_tag="SF2286" /note="cytochrome c-type protein NapC; Provisional; Region: PRK10617" /db_xref="CDD:182590" gene complement(2320269..2320718) /gene="napB" /locus_tag="SF2287" /db_xref="GeneID:1025488" CDS complement(2320269..2320718) /gene="napB" /locus_tag="SF2287" /note="Code: C; COG: COG3043" /codon_start=1 /transl_table=11 /product="nitrate reductase cytochrome C550 subunit" /protein_id="NP_708099.2" /db_xref="GeneID:1025488" /translation="MKSHDLKKALCQWTAMLALVVSGAVWAANGVDFSQSPEVSGTQE GAIRMPKEQDRMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP THFMDSDGKVGAEVAPRRYFCLQCHVPQADTAPIVGNTFTPSKGYGK" misc_feature complement(2320272..2320718) /gene="napB" /locus_tag="SF2287" /note="nitrate reductase cytochrome c-type subunit; Region: napB; PRK11586" /db_xref="CDD:183214" gene complement(2320715..2321578) /gene="napH" /locus_tag="SF2288" /db_xref="GeneID:1025435" CDS complement(2320715..2321578) /gene="napH" /locus_tag="SF2288" /note="Code: C; COG: COG0348" /codon_start=1 /transl_table=11 /product="quinol dehydrogenase membrane protein" /protein_id="NP_708100.1" /db_xref="GeneID:1025435" /translation="MANRKRDAGREALEKKGWWRSHRWLVLRRLCQFFVLGMFLSGPW FGVWILHGNYSSSLLFDTVPLTDPLMTLQSLASGHLPATVALTGAVIITVLYALAGKR LFCSWVCPLNPITDLANWLRRRFDLNQSATIPRHIRYVLLVVILVGSALTGTLIWEWI NPVSLMGRSLVMGFGSGALLILALFLFDLLVVEHGWCGHICPVGALYGVLGSKGVITV AASDRQKCNRCMDCFHVCPEPHVLRAPVLDEQSPVQVTSRDCMTCGRCVDVCSEDVFT ITTRWSSGAKS" misc_feature complement(2320718..2321530) /gene="napH" /locus_tag="SF2288" /note="quinol dehydrogenase membrane component; Provisional; Region: napH; PRK09477" /db_xref="CDD:236535" gene complement(2321565..2322260) /gene="napG" /locus_tag="SF2289" /db_xref="GeneID:1027262" CDS complement(2321565..2322260) /gene="napG" /locus_tag="SF2289" /note="Code: C; COG: COG1145" /codon_start=1 /transl_table=11 /product="quinol dehydrogenase periplasmic protein" /protein_id="NP_708101.1" /db_xref="GeneID:1027262" /translation="MSRSAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV RLRPPGAINENAFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC EDIPCAKVCPSGALDREIESIDDARMGLAVLVDQENCLNFQGLRCDVCYRECPKIDEA ITLELERNTRTGKHARFLPTVHSDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH YRFGWLEGNNGKS" misc_feature complement(2321571..2322260) /gene="napG" /locus_tag="SF2289" /note="quinol dehydrogenase periplasmic component; Provisional; Region: napG; PRK09476" /db_xref="CDD:236534" gene complement(2322267..2324753) /gene="napA" /locus_tag="SF2290" /db_xref="GeneID:1026754" CDS complement(2322267..2324753) /gene="napA" /locus_tag="SF2290" /note="Code: C; COG: COG0243" /codon_start=1 /transl_table=11 /product="nitrate reductase catalytic subunit" /protein_id="NP_708102.1" /db_xref="GeneID:1026754" /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLL RMKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAAS KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAE MHPILWSRITNSRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYII QNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVA EYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHL LTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPS GTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVS DPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFS RRFKTEEVWPEELLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFY LQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGE GYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRA FPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAA QLVNKLTLDATDPLSKETDFKKCAVKLEKV" misc_feature complement(2322270..2324753) /gene="napA" /locus_tag="SF2290" /note="nitrate reductase catalytic subunit NapA; Region: PRK13532" /db_xref="CDD:237416" misc_feature complement(order(2324088..2324090,2324511..2324513, 2324595..2324597,2324607..2324612,2324616..2324618)) /gene="napA" /locus_tag="SF2290" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:239155" misc_feature complement(order(2323080..2323082,2323161..2323163, 2323173..2323181,2323221..2323232,2323296..2323298, 2323308..2323313,2323524..2323529,2323626..2323628, 2323635..2323643,2323962..2323964,2323968..2323970, 2324019..2324027,2324097..2324102,2324109..2324120, 2324217..2324219,2324229..2324231,2324304..2324306, 2324505..2324507)) /gene="napA" /locus_tag="SF2290" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:239155" gene complement(2324750..2325013) /gene="napD" /locus_tag="SF2291" /db_xref="GeneID:1027277" CDS complement(2324750..2325013) /gene="napD" /locus_tag="SF2291" /note="Code: P; COG: COG3062" /codon_start=1 /transl_table=11 /product="assembly protein for periplasmic nitrate reductase" /protein_id="NP_708103.1" /db_xref="GeneID:1027277" /translation="MHTNWQVCSLVVQAKSERISDISTQLNAFPGCEVAVSDAPSGQL IVVVEAEDSETLIQTIESVRNVEGVLAVSLVYHQQEEQGEETP" misc_feature complement(2324753..2325013) /gene="napD" /locus_tag="SF2291" /note="chaperone NapD; Region: PRK10553" /db_xref="CDD:182542" gene complement(2325003..2325497) /gene="napF" /locus_tag="SF2292" /db_xref="GeneID:1027276" CDS complement(2325003..2325497) /gene="napF" /locus_tag="SF2292" /note="Code: C; COG: COG1145" /codon_start=1 /transl_table=11 /product="ferredoxin-type protein" /protein_id="NP_708104.1" /db_xref="GeneID:1027276" /translation="MKIDASRRGILTGCWRKASNGIRPPWSGDESHFLTHCTRCDACI NACENNILQRGTGGYPSVNFKNNECSFCYACAQACPESLFSPRHTRAWDLQFTIGDAC LAYQSVECRRCQDSCEPMAIIFRPTLSGIYQAQLNSQLCNGCGACAASCPVSAITAEY LHAH" misc_feature complement(2325006..2325494) /gene="napF" /locus_tag="SF2292" /note="ferredoxin-type protein NapF; Region: PRK10194" /db_xref="CDD:182296" gene 2325905..2326393 /gene="eco" /locus_tag="SF2293" /db_xref="GeneID:1025479" CDS 2325905..2326393 /gene="eco" /locus_tag="SF2293" /codon_start=1 /transl_table=11 /product="ecotin" /protein_id="NP_708105.2" /db_xref="GeneID:1025479" /translation="MKTILPEVLFAAFATTSAWAAESVQPLEKIAPYPQAETGMKRQV IQLTPQEDESTLKVELLIGQTLEVDCNLHRLGGKLESKTLEGWGYDYYVFDKVSSPVS TMMACPDGKKEKKFVTAYLGDAGMLRYNSKLPIVVYTPDNVDVKYRVWKAEEKIDNAE VR" misc_feature 2325905..2326384 /gene="eco" /locus_tag="SF2293" /note="ecotin; Provisional; Region: PRK03719" /db_xref="CDD:179637" misc_feature order(2326160..2326174,2326286..2326303) /gene="eco" /locus_tag="SF2293" /note="secondary substrate binding site [active]" /db_xref="CDD:153074" misc_feature 2326208..2326219 /gene="eco" /locus_tag="SF2293" /note="primary substrate binding site [active]" /db_xref="CDD:153074" misc_feature 2326214..2326219 /gene="eco" /locus_tag="SF2293" /note="inhibition loop" /db_xref="CDD:153074" misc_feature 2326352..2326384 /gene="eco" /locus_tag="SF2293" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153074" gene complement(2326515..2328139) /gene="yojH" /locus_tag="SF2294" /pseudo /db_xref="GeneID:1027290" misc_feature complement(2326515..2328139) /gene="yojH" /locus_tag="SF2294" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788539 (549 aa). BLAST with identity of 97% in 541 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2328357..2330000) /gene="yojI" /locus_tag="SF2295" /db_xref="GeneID:1027295" CDS complement(2328357..2330000) /gene="yojI" /locus_tag="SF2295" /note="Code: Q; COG: COG1132" /codon_start=1 /transl_table=11 /product="multidrug transporter membrane protein-binding protein" /protein_id="NP_708106.1" /db_xref="GeneID:1027295" /translation="MELLVLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETA DTSLLVLPEFLGLLLLLMAVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL GSASLLAGLTSDVRNITIAFVRLPELGQGIILTIGSSAYLWMLSGKMLLVTAIWMAIT IWGGFVLVARVYKHMATLRETEDKLYTDFQTVLEGRKELTLNRERAEYVFNNLYIPDA QEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR TPLLSAVGALPTLLTAQVAFNKLNKFALAPFKAEFPRPQAFPNWQTLELRNVTFAYQD NAFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSGEQP EDYRKLFSAVFTDVWLFDQLLGPEGQPANPQLVEKWLAQLKMAHKLELSNGRIVNLKL SKGQKKRVALLLALAEERDIILLDEWAVDQDPHFRREFYQVLLPLMQEMGKTIFAISH DDHYFIHADRLLEMRNGQLSELTGEERDAASRDAVARTA" misc_feature complement(2328360..2330000) /gene="yojI" /locus_tag="SF2295" /note="multidrug transporter membrane component/ATP-binding component; Provisional; Region: PRK10522" /db_xref="CDD:236707" gene complement(2330076..2330726) /gene="alkB" /locus_tag="SF2296" /db_xref="GeneID:1027266" CDS complement(2330076..2330726) /gene="alkB" /locus_tag="SF2296" /note="Code: L; COG: COG3145" /codon_start=1 /transl_table=11 /product="alpha-ketoglutarate-dependent dioxygenase AlkB" /protein_id="NP_708107.1" /db_xref="GeneID:1027266" /translation="MLDLFADAEPWQEPLAAGAVILRRFAFNAAEQLIRDINDVASQS PFRQMVAPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMPQSFHDLCQR AATAAGYPDFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLK RNDPLKRLLLEHGDVVVWGGESRLFYHGIQPLKAGFHPLTTDCRYNLTFRQAGKKE" misc_feature complement(2330091..2330726) /gene="alkB" /locus_tag="SF2296" /note="DNA oxidative demethylase AlkB; Region: PRK15401" /db_xref="CDD:237957" gene complement(2330726..2331790) /gene="ada" /locus_tag="SF2297" /db_xref="GeneID:1027265" CDS complement(2330726..2331790) /gene="ada" /locus_tag="SF2297" /codon_start=1 /transl_table=11 /product="bifunctional DNA-binding transcriptional dual regulator/O6-methylguanine-DNA methyltransferase" /protein_id="NP_708108.1" /db_xref="GeneID:1027265" /translation="MKNATCLTDDQRWQSVLARDPNADGEFVFAVRTTGIFCRPSCRA RHALRENVSFYANASEALAAGFRPCKRCQPDKANPRQHRLDKITHACRLLEQETPVTL EALADQVAMSPFHLHRLFKATTGMTPKAWQQAWRARRLRESLAKGESVTTSILNAGFP DSSSYYRKADETLGMTAKQFRHGGENLAVRYALADCELGRCLVAESERGICAILLGDD DATLISELQQMFPAADNAPADLTFQQHVREVIASLNQRDTPLTLPLDIRGTAFQQQVW QALRTIPCGETVSYQQLANAIGKPKAVRAVASACAANKLAIVIPCHRVVRGDGTLSGY RWGVSRKAQLLRREAENEER" misc_feature complement(2330732..2331790) /gene="ada" /locus_tag="SF2297" /note="bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada; Region: PRK15435" /db_xref="CDD:185333" gene complement(2331864..2332919) /gene="yojL" /locus_tag="SF2298" /db_xref="GeneID:1027268" CDS complement(2331864..2332919) /gene="yojL" /locus_tag="SF2298" /note="Code: H; COG: COG1477" /codon_start=1 /transl_table=11 /product="thiamine biosynthesis lipoprotein ApbE" /protein_id="NP_708109.1" /db_xref="GeneID:1027268" /translation="MEISFTRVALLVAALFFVGCDQKPQPAKTHATEVTVLEGKTMGT FWRASIPGIDAKRSAELKEKIQTQLDADDQLLSTYKKDSALMRFNDSQSLSPWPVSEA MADIVTTSLRIGARTDGAMDITVGPLVNLWGFGPEQQPVQIPSQEQIDAMKAKTGLQH LTVINQSHQQYLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGISRYLVSVGGALNSR GMNGEGQPWRVAIQKPTDKENAVQAVVDINGHGISTSGSYRNYYELDGKRLSHVIDPQ TGRPIEHNLVSVTVIAPTALEADAWDTGLMVLGPEKAKEVVRREGLAVYMITKEGDSF KTWMSPQFKSFLVSEKN" misc_feature complement(2331870..2332919) /gene="yojL" /locus_tag="SF2298" /note="thiamine biosynthesis lipoprotein ApbE; Provisional; Region: PRK10461" /db_xref="CDD:182478" gene complement(2333031..2334152) /gene="ompC" /locus_tag="SF2299" /db_xref="GeneID:1026756" CDS complement(2333031..2334152) /gene="ompC" /locus_tag="SF2299" /note="Code: M; COG: COG3203" /codon_start=1 /transl_table=11 /product="porin" /protein_id="NP_708110.1" /db_xref="GeneID:1026756" /translation="MKVKVLSLLVPALLVAGAANAAEVYNKDGNKLDLYGKVDGLHYF SDDKSVDGDQTYMRLGFKGETQVTDQLTGYGQWEYQIQGNSAENENNSWTRVAFAGLK FQDVGSFDYGRNYGVVYDVTSWTDVLPEFGGDTYGSDNFMQQRGNGFATYRSTDFFGL VDGLNFAVQYQGKNGSPEGEGMTNNGREALRQNGDGVGGSITYDYEGFGIGAAVSSSK RTDDQNFGLNRYDERYIGNGDRAETYTGGLKYDANNIYLAAQYTQTYNATRVGNLGWA NKAQNFEAVAQYQFDFGLRPSLAYLQSKGKNLGVINGRNYDDEDILKYVDVGATYYFN KNMSTYVDYKINLLDDNQFTRDAGINTDNIVALGLVYQF" misc_feature complement(2333034..2334113) /gene="ompC" /locus_tag="SF2299" /note="outer membrane porin protein C; Provisional; Region: PRK10554" /db_xref="CDD:182543" gene 2334487..2334578 /gene="micF" /locus_tag="SF4556" /db_xref="GeneID:1025469" ncRNA 2334487..2334578 /ncRNA_class="other" /gene="micF" /locus_tag="SF4556" /product="MicF RNA; inhibitor of OpmF" /db_xref="GeneID:1025469" gene 2334890..2337562 /gene="yojN" /locus_tag="SF2300" /db_xref="GeneID:1025460" CDS 2334890..2337562 /gene="yojN" /locus_tag="SF2300" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="phosphotransfer intermediate protein in two-component regulatory system with RcsBC" /protein_id="NP_708111.1" /db_xref="GeneID:1025460" /translation="MRQKETTATTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA WLKDKSYQIVDITHAIQKRVDTWRYVTRQIYDNIAATTSPSSGEGLQETRLKQDVYYL EKPRRKTEALIFGSHDNSTLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLVLIST LPLKDLTSGFKESTVSDIVDSRRAEMLQQANALDERESFSNMRRLAWQNGHYFTLRTT FNQPGHLATVVAFDLPINDLIPPGMPLDSFRLEPDATATGNNDNEKEGTDSVSIHFNS TKIEISSALNSTDMRLVWQVPYGTLLLDTLQNILLPLLLNIGLLALALFGYTTFRHFS SRSTESVPSTAVNNELRILRAINEEIVSLLPLGLLVHDQESNRTVISNKIADHLLPHL NLQNITTMAEQHQGIIQATINNELYEIRMFRSQVAPRTQIFIIRDQDREVLVNKKLKQ AQRLYEKNQQGRMTFMKNIGDALKEPAQSLAESAAKLNAPESKQLANQADVLVRLVEE IQLANMLADDSWKSETVLFSVQDLIDEVVPSVLPAIKRKGLQLLINNHLKAHDMRRGD RDALRRILLLLMQYAVTSTQLGKITLEVDQDESSEDRLTFRILDTGEGVSIHEMDNLH FPFINQTQNDRYGKADPLAFWLSDQLARKLGGHLNIKTRDGLGTRYSVHIKMLAADPE VEEEEERLLDDVCVMVDVTSAEIRNIVTRLLENWGATCITPDERLISQDYDIFLTDNP SNLTASGLLLSDDESGVREIGPGQLCVNFNMSNAMQEAVLQLIEVQLAQEEVTESPLG GDENAQLHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPG KQLCETLEHLIREKDVPGIEKYISDIDSYVKSLL" misc_feature 2334911..2337559 /gene="yojN" /locus_tag="SF2300" /note="phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional; Region: PRK10618" /db_xref="CDD:236726" gene 2337579..2338229 /gene="rcsB" /locus_tag="SF2301" /db_xref="GeneID:1025149" CDS 2337579..2338229 /gene="rcsB" /locus_tag="SF2301" /note="Code: TK; COG: COG2197" /codon_start=1 /transl_table=11 /product="transcriptional regulator RcsB" /protein_id="NP_708112.2" /db_xref="GeneID:1025149" /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPADKD" misc_feature 2337579..2338226 /gene="rcsB" /locus_tag="SF2301" /note="transcriptional regulator RcsB; Provisional; Region: PRK10840" /db_xref="CDD:182771" gene complement(2338429..2341278) /gene="rcsC" /locus_tag="SF2302" /db_xref="GeneID:1025470" CDS complement(2338429..2341278) /gene="rcsC" /locus_tag="SF2302" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="hybrid sensory kinase in two-component regulatory system with RcsB and YojN" /protein_id="NP_708113.2" /db_xref="GeneID:1025470" /translation="MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQR ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAF EPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL RDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPCVGYFYALTPVYLANR LQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGDPRWMQERSW FGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLA RMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLN MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRV KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLV TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG LYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDT GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS QFTVRIPLYGAQYPHNKGVKGLSGKRCCLTVPNASLCQFLETSLQRSGIVVTTYEGQE PTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARI YLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND GVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRC LESGMDSCLSKPVTLDVIKQTLTVYAERVRKSRDS" misc_feature complement(2338438..2341209) /gene="rcsC" /locus_tag="SF2302" /note="two-component system sensor histidine kinase RcsC; Region: PRK10841" /db_xref="CDD:182772" gene complement(2341553..2342329) /locus_tag="SF2303" /db_xref="GeneID:1027278" CDS complement(2341553..2342329) /locus_tag="SF2303" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708114.1" /db_xref="GeneID:1027278" /translation="MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASF SQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSF ARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHV VTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETE LTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW" misc_feature complement(2341556..2341924) /locus_tag="SF2303" /note="Uncharacterized conserved protein YfaP, DUF2135 family [Function unknown]; Region: YfaP; COG4676" /db_xref="CDD:443712" gene complement(2342334..2343983) /locus_tag="SF2304" /db_xref="GeneID:1025463" CDS complement(2342334..2343983) /locus_tag="SF2304" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708115.1" /db_xref="GeneID:1025463" /translation="MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQLSSSGV TKVSALPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRD TALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLA TLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTD GTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKST TAVKPSVLNGRYRVTFTNGNHITFVSHGETTLLSEKGKLKLQSHLDREEYVARVLDRE AKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWT QELIYAGDPVHYHGSRATEGTLSWRQATAQAGQGERYDQILAFAYPDNSLSRWGAPRS TCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRN FFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD" misc_feature complement(2342343..2343983) /locus_tag="SF2304" /note="Uncharacterized conserved protein YfaQ, DUF2300 domain [Function unknown]; Region: YfaQ; COG5445" /db_xref="CDD:444196" gene complement(2343984..2346261) /locus_tag="SF2305" /pseudogene="unknown" /db_xref="GeneID:1027270" misc_feature complement(2344486..2349751) /note="Similar to Escherichia coli K12 membrane protein gi: 1788559 (1338 aa). BLAST with identity of 98% in 1755 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element complement(2346250..2347498) /mobile_element_type="insertion sequence:IS911" gene complement(2346258..2347097) /locus_tag="SF2306" /db_xref="GeneID:1027279" CDS complement(2346258..2347097) /locus_tag="SF2306" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_708117.1" /db_xref="GeneID:1027279" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature complement(2346267..2347076) /locus_tag="SF2306" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(2347124..2347462) /locus_tag="SF2307" /db_xref="GeneID:1025484" CDS complement(2347124..2347462) /locus_tag="SF2307" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_708118.1" /db_xref="GeneID:1025484" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature complement(2347154..2347423) /locus_tag="SF2307" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(2349775..2350398) /locus_tag="SF2309" /db_xref="GeneID:1027249" CDS complement(2349775..2350398) /locus_tag="SF2309" /note="Code: S; COG: COG3234" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708119.2" /db_xref="GeneID:1027249" /translation="MRHGLLALICWLCCVVAHSEMLNVEQSRLFRAWFVRIAQEQLRQ GPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNW NQGSGKNGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYH TGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR" misc_feature complement(2349784..2350335) /locus_tag="SF2309" /note="Uncharacterized conserved protein YfaT, DUF1175 family [Function unknown]; Region: yfaT; COG3234" /db_xref="CDD:442466" gene complement(2350395..2352131) /gene="yfaA" /locus_tag="SF2310" /pseudo /db_xref="GeneID:1027250" misc_feature complement(2350395..2352131) /gene="yfaA" /locus_tag="SF2310" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788561 (579 aa). BLAST with identity of 98% in 578 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2352232..2354859) /gene="gyrA" /locus_tag="SF2311" /db_xref="GeneID:1027274" CDS complement(2352232..2354859) /gene="gyrA" /locus_tag="SF2311" /note="Code: L; COG: COG0188" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit A" /protein_id="NP_708120.1" /db_xref="GeneID:1027274" /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFP TAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEK IAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM VALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDP IIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYL TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELEL VREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKG KSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLP LEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDEL IGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG DGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMI TDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAA EGDDEIAPEVDVDDEPEEE" misc_feature complement(2352334..2354841) /gene="gyrA" /locus_tag="SF2311" /note="DNA gyrase subunit A; Validated; Region: PRK05560" /db_xref="CDD:235502" misc_feature complement(2353105..2353248) /gene="gyrA" /locus_tag="SF2311" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(2352946..2353098) /gene="gyrA" /locus_tag="SF2311" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(2352796..2352930) /gene="gyrA" /locus_tag="SF2311" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(2352643..2352786) /gene="gyrA" /locus_tag="SF2311" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(2352490..2352636) /gene="gyrA" /locus_tag="SF2311" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" gene 2355006..2355728 /gene="ubiG" /locus_tag="SF2312" /db_xref="GeneID:1025473" CDS 2355006..2355728 /gene="ubiG" /locus_tag="SF2312" /note="Code: H; COG: COG2227" /codon_start=1 /transl_table=11 /product="bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase" /protein_id="NP_708121.1" /db_xref="GeneID:1025473" /translation="MNAEKSPENHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLR LGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG IQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTL NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNP ITNSFKLGPGVDVNYMLHTQNK" misc_feature 2355051..2355707 /gene="ubiG" /locus_tag="SF2312" /note="ubiquinone biosynthesis O-methyltransferase; Region: UbiG; TIGR01983" /db_xref="CDD:273910" misc_feature order(2355192..2355212,2355258..2355263,2355333..2355341, 2355390..2355392) /gene="ubiG" /locus_tag="SF2312" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" misc_feature complement(2355856..2360922) /note="Similar to Escherichia coli K12 ATP-binding component of a transport system gi: 1788565 (1251 aa). BLAST with identity of 96% in 1688 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." gene complement(2355856..2359455) /locus_tag="SF2312a" /pseudogene="unknown" /db_xref="GeneID:16608343" mobile_element 2359428..2360758 /mobile_element_type="insertion sequence:IS2" gene 2359908..2360747 /locus_tag="SF2314" /db_xref="GeneID:1025466" CDS 2359908..2360747 /locus_tag="SF2314" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 ORF2" /protein_id="NP_708123.3" /db_xref="GeneID:1025466" /translation="MSRAQLHVILRRTDDWKDGRRSRHSDDTDVLLRIHHVIGELPTY GYRRVWALLRRQAELDGMPAINAKRIYRLMRQNALLLERKLAVPPSKRAHTGRVAVKE SNQRWCSDGFEFRCDNGEKLRVTFALDCCDRKALHWAVTTGGFNSETVQDVMLGAVER RFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTI KRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRC LEI" misc_feature 2359908..2360744 /locus_tag="SF2314" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene 2361618..2363903 /gene="nrdA" /locus_tag="SF2316" /db_xref="GeneID:1027246" CDS 2361618..2363903 /gene="nrdA" /locus_tag="SF2316" /note="Code: F; COG: COG0209" /codon_start=1 /transl_table=11 /product="ribonucleotide-diphosphate reductase subunit alpha" /protein_id="NP_708124.1" /db_xref="GeneID:1027246" /translation="MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELR SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPAL YDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNR VTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTP TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD YGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQR VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPTIAPVRQSNLCLEIALPTKPLN DVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAM GRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACP WFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSET SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLV GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED AQDDLVPSIQDDGCESGACKI" misc_feature 2361627..2363900 /gene="nrdA" /locus_tag="SF2316" /note="ribonucleoside-diphosphate reductase subunit alpha; Region: PRK09103" /db_xref="CDD:181649" gene 2364098..2365267 /gene="nrdB" /locus_tag="SF2317" /db_xref="GeneID:1027242" CDS 2364098..2365267 /gene="nrdB" /locus_tag="SF2317" /note="Code: F; COG: COG0208" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase 1 subunit beta" /protein_id="NP_708125.4" /db_xref="GeneID:1027242" /translation="MPYPALNSQQDTLMAYTTFSQTKNDQLKEPMFFGQPVNVARYDQ QKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQG RSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQI QKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALE AIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMA EIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVG LDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL" misc_feature 2364137..2365264 /gene="nrdB" /locus_tag="SF2317" /note="ribonucleotide-diphosphate reductase subunit beta; Reviewed; Region: nrdB; PRK09101" /db_xref="CDD:181647" misc_feature order(2364248..2364250,2364269..2364271,2364464..2364469, 2364476..2364478,2364485..2364490,2364497..2364499, 2364506..2364508,2364548..2364553,2364560..2364562) /gene="nrdB" /locus_tag="SF2317" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153108" misc_feature order(2364281..2364283,2364389..2364391,2364482..2364484, 2364491..2364493,2364503..2364505,2364845..2364850, 2364860..2364862) /gene="nrdB" /locus_tag="SF2317" /note="putative radical transfer pathway [active]" /db_xref="CDD:153108" misc_feature order(2364389..2364391,2364482..2364484,2364491..2364493, 2364749..2364751,2364851..2364853,2364860..2364862) /gene="nrdB" /locus_tag="SF2317" /note="diiron center [ion binding]; other site" /db_xref="CDD:153108" misc_feature 2364503..2364505 /gene="nrdB" /locus_tag="SF2317" /note="tyrosyl radical; other site" /db_xref="CDD:153108" gene 2365267..2365521 /gene="yfaE" /locus_tag="SF2318" /db_xref="GeneID:1025503" CDS 2365267..2365521 /gene="yfaE" /locus_tag="SF2318" /note="Code: C; COG: COG0633" /codon_start=1 /transl_table=11 /product="2Fe-2S ferredoxin" /protein_id="NP_708126.1" /db_xref="GeneID:1025503" /translation="MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGS CRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL" misc_feature 2365267..2365518 /gene="yfaE" /locus_tag="SF2318" /note="2Fe-2S ferredoxin-like protein; Region: PRK10713" /db_xref="CDD:182668" misc_feature order(2365363..2365368,2365375..2365377,2365384..2365386, 2365390..2365401,2365477..2365482) /gene="yfaE" /locus_tag="SF2318" /note="catalytic loop [active]" /db_xref="CDD:238126" misc_feature order(2365375..2365377,2365390..2365392,2365399..2365401, 2365480..2365482) /gene="yfaE" /locus_tag="SF2318" /note="iron binding site [ion binding]; other site" /db_xref="CDD:238126" gene complement(2365575..2366225) /gene="inaA" /locus_tag="SF2319" /db_xref="GeneID:1025485" CDS complement(2365575..2366225) /gene="inaA" /locus_tag="SF2319" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708127.1" /db_xref="GeneID:1025485" /translation="MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKL YVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALL VTEDMAGFISIADWYARHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIY VKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM" misc_feature complement(2365578..2366225) /gene="inaA" /locus_tag="SF2319" /note="lipopolysaccharide kinase InaA; Region: PRK09902" /db_xref="CDD:182136" gene 2366440..2366646 /gene="yfaH" /locus_tag="SF2320" /db_xref="GeneID:1025492" CDS 2366440..2366646 /gene="yfaH" /locus_tag="SF2320" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708128.1" /db_xref="GeneID:1025492" /translation="MNFIRQGLGIALQPELTLKSIAGELCSVPHEPTFYRQISLLTKE KPVEGSPLFLLQMCMEQLVAIGKI" misc_feature 2366440..2366643 /gene="yfaH" /locus_tag="SF2320" /note="hypothetical protein; Provisional; Region: PRK09729" /db_xref="CDD:182050" gene complement(2366688..2367764) /gene="glpQ" /locus_tag="SF2321" /db_xref="GeneID:1027255" CDS complement(2366688..2367764) /gene="glpQ" /locus_tag="SF2321" /note="Code: C; COG: COG0584" /codon_start=1 /transl_table=11 /product="glycerophosphodiester phosphodiesterase" /protein_id="NP_708129.2" /db_xref="GeneID:1027255" /translation="MKLKLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLP EHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRY YAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNH STGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRI KNELEPKMGMELNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADG IGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDAL YNKAGVNGLFTDFPDKAVKFLNKE" misc_feature complement(2366691..2367752) /gene="glpQ" /locus_tag="SF2321" /note="glycerophosphodiester phosphodiesterase; Provisional; Region: glpQ; PRK11143" /db_xref="CDD:236859" gene complement(2367769..2369127) /gene="glpT" /locus_tag="SF2322" /db_xref="GeneID:1027252" CDS complement(2367769..2369127) /gene="glpT" /locus_tag="SF2322" /note="Code: G; COG: COG2271" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate transporter" /protein_id="NP_708130.1" /db_xref="GeneID:1027252" /translation="MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV RKNFALAMPYLVEQGFSRGDLRFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV WNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP PIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS PTYLKEVKHFALDKSSWAYFFYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI ATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQKRN GG" misc_feature complement(2367772..2369127) /gene="glpT" /locus_tag="SF2322" /note="glycerol-3-phosphate transporter; Region: glpT; PRK11273" /db_xref="CDD:236889" gene 2369400..2371028 /gene="glpA" /locus_tag="SF2323" /db_xref="GeneID:1025493" CDS 2369400..2371028 /gene="glpA" /locus_tag="SF2323" /note="Code: C; COG: COG0578" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate dehydrogenase subunit A" /protein_id="NP_708131.2" /db_xref="GeneID:1025493" /translation="MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLS FQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLD AKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAE YADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYN EIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV LLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEP AEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVEN LNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKG VQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL" misc_feature 2369472..2371007 /gene="glpA" /locus_tag="SF2323" /note="anaerobic glycerol-3-phosphate dehydrogenase subunit A; Region: glpA; PRK11101" /db_xref="CDD:236847" gene 2371018..2372277 /gene="glpB" /locus_tag="SF2324" /db_xref="GeneID:1026758" CDS 2371018..2372277 /gene="glpB" /locus_tag="SF2324" /note="Code: E; COG: COG3075" /codon_start=1 /transl_table=11 /product="anaerobic glycerol-3-phosphate dehydrogenase subunit B" /protein_id="NP_708132.2" /db_xref="GeneID:1026758" /translation="MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGS LDLLSHLPDGQPVADIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQL QGSVELAHQRITPLGTLRATWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLR ELDLSVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMI LMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPG DEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIRETILGLD VLQTATRGEWYKGDFFAPQPWQQFGVTTDETLRPSQAGQTIENLFAIGSVLGGFDPIA QGCGGGVCAVSALHAAQQIAQRAGGQQ" misc_feature 2371024..2372253 /gene="glpB" /locus_tag="SF2324" /note="glycerol-3-phosphate dehydrogenase, anaerobic, B subunit; Region: glycerol3P_GlpB; TIGR03378" /db_xref="CDD:213807" gene 2372274..2373464 /gene="glpC" /locus_tag="SF2325" /db_xref="GeneID:1025483" CDS 2372274..2373464 /gene="glpC" /locus_tag="SF2325" /note="Code: C; COG: COG0247" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate dehydrogenase subunit C" /protein_id="NP_708133.2" /db_xref="GeneID:1025483" /translation="MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMG SVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSIAAQQAQYK DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ AITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWC KLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAG TYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLA QALA" misc_feature 2372280..2373461 /gene="glpC" /locus_tag="SF2325" /note="glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; Region: glycerol3P_GlpC; TIGR03379" /db_xref="CDD:132422" gene 2373657..2374607 /gene="yfaD" /locus_tag="SF2326" /db_xref="GeneID:1025505" CDS 2373657..2374607 /gene="yfaD" /locus_tag="SF2326" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708134.1" /db_xref="GeneID:1025505" /translation="MTESTTSSPHDAVFKTFIFTPETARDFLEIHLPEPLRKLCNLQT LRLEPTSFIEKSLRAYYSDVLWSVETSDGDGYIYCVIEHQSSAEKNMAFRPMRYATAA MQSHLDKGYDRVPLVVPLLFYHGETSPYPYSLNWLDEFDDPQLARQLYTEAFPLVDIT IVPDDEIMQHRRIALLELIQKHIRDHDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQ CGDTSRFTRFIQEIAERSPLQKERLMTIAERLRQEGHQIGWQEGKLVGLQQGKLEGLQ EGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH" misc_feature 2373657..2374604 /gene="yfaD" /locus_tag="SF2326" /note="ISNCY family transposase; Region: PRK09956" /db_xref="CDD:182167" gene complement(2374648..2375118) /locus_tag="SF2327" /pseudo /db_xref="GeneID:1025498" misc_feature complement(2374648..2375118) /locus_tag="SF2327" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788578 (268 aa). BLAST with identity of 98% in 153 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(2375173..2376375) /locus_tag="SF2328" /db_xref="GeneID:1023488" CDS complement(2375173..2376375) /locus_tag="SF2328" /note="Code: R; COG: COG1058" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708135.1" /db_xref="GeneID:1023488" /translation="MLKVEMLSTGDEVLYGQIVDTNAAWLADFFFHQGLPLSRRNTVG DNLDDLVTILRERSQHADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHEAWLKEMER YFHERGRVMAPSNRKQAELPASAEFINNPVGTACGFAVQLNRCLMFFTPGVPSEFKVM VEHEILPRLRERFSLPQPPVCLRLTTFGRSESDLAQSLDTLQLPPGVTMGYRSSMPII ELKLTGPASEQQAMEKLWLDVKRVAGQSVIFEGTEGLPAQISRELQNRQFSLTLSEQF TGGLLALQLSRAGAPLLACEVIPSQEETLAQTAHWITERRANHFAGLALAVSGFENEH LNFALATPDGTFALRVRFSTTRYSLAIRQEVCAMMALNMLRRWLNGQDIASEHGWIEV VESMTLSV" misc_feature complement(2375188..2376375) /locus_tag="SF2328" /note="nicotinamide mononucleotide deamidase-related protein YfaY; Region: PRK03673" /db_xref="CDD:179629" gene complement(2376462..2377004) /locus_tag="SF2329" /db_xref="GeneID:1027264" CDS complement(2376462..2377004) /locus_tag="SF2329" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708136.2" /db_xref="GeneID:1027264" /translation="MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTEST GLALSGNWTHNDDDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGG LQWKIGNSFRLFGEYYYSPDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGK DGNRDNAVADGLYVGVNASF" misc_feature complement(2376465..2377004) /locus_tag="SF2329" /note="YfaZ precursor; Region: YfaZ; pfam07437" /db_xref="CDD:284781" gene 2377199..2377708 /gene="yfaO" /locus_tag="SF2330" /db_xref="GeneID:1027259" CDS 2377199..2377708 /gene="yfaO" /locus_tag="SF2330" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="nucleoside triphosphatase NudI" /protein_id="NP_708137.3" /db_xref="GeneID:1027259" /translation="MQKRLLSLSHISELPYSHGFFLFIRNTPVRQRTIVCPLIQNDGA YLLCKMADDRGVFPGQWALSGGGVESGERIEEALRREIREELGEQLLLTEITPWTFSD DIRTKTYADGRKEEIYMIYLIFDCVSANREVKINEEFQDYAWVKPEDLVHYDLNVATR KTLRLKGLL" misc_feature 2377283..2377705 /gene="yfaO" /locus_tag="SF2330" /note="nucleoside triphosphatase NudI; Provisional; Region: PRK15472" /db_xref="CDD:185369" gene complement(2377747..2378325) /gene="ais" /locus_tag="SF2331" /db_xref="GeneID:1027258" CDS complement(2377747..2378325) /gene="ais" /locus_tag="SF2331" /codon_start=1 /transl_table=11 /product="lipopolysaccharide core heptose(II)-phosphate phosphatase" /protein_id="NP_708138.2" /db_xref="GeneID:1027258" /translation="MKSKKYFIILLALAAIAGLGTHAAWSSNGLPRIDNKTLARLAQQ HPVVVLFRHAERCDRSTNQCLSDKTGITVKGTQDARELGNAFSADISDFDLYSSNTVR TIQSATWFSAGKKLTVDKRLLQCGNEIYSAIKDLQSKAPDKNIVIFTHNHCLTYIAKN KRDAIFKPDYLDGLVMHVEKGKVYLDGEFVNH" misc_feature complement(2377750..2378325) /gene="ais" /locus_tag="SF2331" /note="lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional; Region: PRK15416" /db_xref="CDD:185314" misc_feature complement(order(2377873..2377878,2378020..2378022, 2378167..2378172)) /gene="ais" /locus_tag="SF2331" /note="catalytic core [active]" /db_xref="CDD:132716" gene 2378690..2379796 /locus_tag="SF2332" /db_xref="GeneID:1025891" CDS 2378690..2379796 /locus_tag="SF2332" /note="Code: M; COG: COG0399" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708139.4" /db_xref="GeneID:1025891" /translation="MGVEELAAVKEVLESGWITTGPKNQALEQAFCQLTGNQHAIAVS SATAGMHITLMALEIGKGDEVITPSLTWVSTLNMISLLGATPVMVDVDRDTLMVTPEA IESAITPRTKAIIPVHYAGAPADIDAIRAIGERYGIAVIEDAAHAVGTYYKGRHIGAK GTAIFSFHAIKNITCAEGGLIVTDNENLARQLRMLKFHGLGVDAYDRQTWGRAPQAEV LTPGYKYNLTDINAAIALTQLVKLEHLNTRRREIAQQYQQALAALPFQPLSLPAWPHV HAWHLFIIRVDEQRCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNT EWNSERICSLPLFPDMTTADADRVITALQQLAGQ" misc_feature 2378690..2379793 /locus_tag="SF2332" /note="UDP-4-amino-4-deoxy-L-arabinose aminotransferase; Region: PRK11658" /db_xref="CDD:183263" misc_feature order(2378825..2378830,2379116..2379118,2379125..2379127, 2379185..2379187,2379197..2379202,2379623..2379625) /locus_tag="SF2332" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99740" misc_feature order(2378825..2378830,2378900..2378902,2379116..2379118, 2379125..2379127,2379185..2379187,2379200..2379202) /locus_tag="SF2332" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99740" misc_feature 2379200..2379202 /locus_tag="SF2332" /note="catalytic residue [active]" /db_xref="CDD:99740" gene 2379800..2380768 /locus_tag="SF2333" /db_xref="GeneID:1027227" CDS 2379800..2380768 /locus_tag="SF2333" /note="Code: M; COG: COG0463" /codon_start=1 /transl_table=11 /product="undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase" /protein_id="NP_708140.1" /db_xref="GeneID:1027227" /translation="MFEIHPVKKVSVVIPVYNEQESLPELIRRTTTACESLGKEYEIL LIDDGSSDNSAHMLVEASQAENSHIVSILINRNYGQHSAIMAGFSHVTGDLIITLDAD LQNPPEEIPRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYG CMLRAYRRHIVDAMLHCHERSTFIPILANIFARRAIEIPVHHAEREFGESKYSFMRLI NLMYDLVTCLTTTPLRMLSLLGSIIAIGGFSIAVLLVILRLTFGPQWAAEGVFMLFAV LFTFIGAQFIGMGLLGEYIGRIYTDVRARPRYFVQQVIRPSSKENE" misc_feature 2379806..2380762 /locus_tag="SF2333" /note="undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714" /db_xref="CDD:182669" gene 2380768..2382749 /locus_tag="SF2334" /pseudogene="unknown" /db_xref="GeneID:1027289" gene 2382746..2383636 /locus_tag="SF2335" /db_xref="GeneID:1025486" CDS 2382746..2383636 /locus_tag="SF2335" /codon_start=1 /transl_table=11 /product="4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase ArnD" /protein_id="NP_708142.1" /db_xref="GeneID:1025486" /translation="MTKVGLRIDVDAFRGTREGVPRLLEILSKHNIQASIFFSVGPDN MGRHLWRLVKPQFLWKMLRSNAASLYGWDILLAGTAWPGKEIGHANADIIREAAKHHE VGLHAWDHHAWQARSGNWDRQTMIDDIARGLRTLEEIIGQPVTCSAAAGWRADQKVIE AKEAFHLRYNSDCRGAIPFRPLLESGNPGTAQIPVTLPTWDEVIGRDVKAEDFNGWLL NRILRDKGTPVYTIHAEVEGCAYQHNFVDLLKRAAQEGVTFCPLSELLSETLPLGQVV RGNIAGREGWLGCQQIAGSR" misc_feature 2382746..2383618 /locus_tag="SF2335" /note="4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional; Region: PRK15394" /db_xref="CDD:185292" gene 2383636..2385288 /gene="arnT" /locus_tag="SF2336" /db_xref="GeneID:1027765" CDS 2383636..2385288 /gene="arnT" /locus_tag="SF2336" /note="Code: M; COG: COG1807" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxy-L-arabinose lipid A transferase" /protein_id="NP_708143.2" /db_xref="GeneID:1027765" /translation="MKSVRYLIGIFAFIACYYLLPISTRLLWQPDETRYAEISREMLA SGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFT LRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKG KSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLT VLPWGLAIAQREPDFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLP GALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFAPLAMLLAHYALLA AKNNPLALRINGWINIAFGVTGIIATFVISPWGPMNTPVWQTFESYKVFCAWSIFSLW AFFGWYTLTNVEKTWSFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSR YILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHR QEGIITLVLSVDRDEDINSLAIPPADAIVRQERLVLIQYRPK" misc_feature 2383636..2385282 /gene="arnT" /locus_tag="SF2336" /note="lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Region: arnT; PRK13279" /db_xref="CDD:237330" gene 2385620..2386006 /locus_tag="SF2337" /db_xref="GeneID:1027229" CDS 2385620..2386006 /locus_tag="SF2337" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxy-L-arabinose-phospho-UDP flippase" /protein_id="NP_708144.4" /db_xref="GeneID:1027229" /translation="MCLIWGLFSVIIASVAQLSLGFAASHLPPMTHLWDFIAALLAFG LDARILLLGLLGYLLSVFCWYKTLHKLALSKAYALLSMSYVLVWIASMVLPGWEGTFS LKALLGVACIMSGLMLIFLPTTKQRY" misc_feature 2385620..2386003 /locus_tag="SF2337" /note="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional; Region: PRK02971" /db_xref="CDD:235094" gene complement(2386000..2386272) /gene="pmrD" /locus_tag="SF2338" /db_xref="GeneID:1027256" CDS complement(2386000..2386272) /gene="pmrD" /locus_tag="SF2338" /codon_start=1 /transl_table=11 /product="signal transduction protein PmrD" /protein_id="NP_708145.1" /db_xref="GeneID:1027256" /translation="MQWNGWHKKSCCNKQDNRHVLMLCDAGGAIKMIAEVKSDFAVKV GDLLSPLQNALYCINREKLHTVKVLSASSYSPDEWERQCTAAGKTQ" misc_feature complement(2386012..2386272) /gene="pmrD" /locus_tag="SF2338" /note="signal transduction protein PmrD; Provisional; Region: PRK15450" /db_xref="CDD:185347" gene complement(2386377..2387732) /gene="menE" /locus_tag="SF2339" /db_xref="GeneID:1025478" CDS complement(2386377..2387732) /gene="menE" /locus_tag="SF2339" /note="Code: IQ; COG: COG0318" /codon_start=1 /transl_table=11 /product="2-succinylbenzoate-CoA ligase" /protein_id="NP_708146.1" /db_xref="GeneID:1025478" /translation="MIFSDWPWRHWRQVRGEAIALRLNDEQLNWRELCARVDELATGF AAQGVVEGSGVMLRAWNTPQTLLAWLALLQCGARVLPVNPQLPQPLLEELLPNLTLQF ALVPDGENTFPALTSLHIQLVEGVHAAAWQPTRLCSMTLTSGSTGLPKAAVHTYQAHL ASAQGVLSLIPFGDHDDWLLSLPLFHVSGQGIMWRWLYAGARMTVRDKQPLEQMLAGC THASLVPTQLWRLLVNRSSVSLKAVLLGGAAIPVELTEQAREQGIRCFCGYGLTEFAS TVCAKEADGLADVGLPLPGREVKIVNNEVWLRAASMAEGYWRNGQLVSLVNDEGWYAT RDRGEMHNGKLTIVGRLDNLFFSGGEGIQPEEVERVIAAHPAVLQVFIVSVADKEFGH RPVAVVEYDQQTVDLGEWVKDKLARFQQPVRWLTLPPELKNGGIKISRQALKEWVQRQ Q" misc_feature complement(2386380..2387732) /gene="menE" /locus_tag="SF2339" /note="O-succinylbenzoic acid--CoA ligase; Provisional; Region: PRK09029" /db_xref="CDD:236363" gene complement(2387729..2388691) /gene="menC" /locus_tag="SF2340" /db_xref="GeneID:1025521" CDS complement(2387729..2388691) /gene="menC" /locus_tag="SF2340" /note="Code: H; COG: COG1441" /codon_start=1 /transl_table=11 /product="O-succinylbenzoate synthase" /protein_id="NP_708147.1" /db_xref="GeneID:1025521" /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLREGEREGWGE ISPLPGFSQENWEEAQSVLLAWVNNWLAGDCELPQMPSVAFGVSCALAELTDTLPQAA NYRAAPLCNGDPDDLILKLADMPGEKVAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL DANRAWTPLKGQQFAKYVNPDYRHRIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE PDFAFVAEEGVRAVVIKPTLTGSLEKVREQVQAAHALGLTAVISSSIESSLGLTQLAR IAAWLTPDTIPGLDTLDLMQAQQVRRWPGSPLPLVDADVQEQLL" misc_feature complement(2387732..2388691) /gene="menC" /locus_tag="SF2340" /note="O-succinylbenzoate synthase; Provisional; Region: PRK05105" /db_xref="CDD:235345" gene complement(2388691..2389548) /gene="menB" /locus_tag="SF2341" /db_xref="GeneID:1025489" CDS complement(2388691..2389548) /gene="menB" /locus_tag="SF2341" /note="Code: H; COG: COG0447" /codon_start=1 /transl_table=11 /product="1,4-dihydroxy-2-naphthoyl-CoA synthase" /protein_id="NP_708148.1" /db_xref="GeneID:1025489" /translation="MIYPDEAMPYAPVEWHDCSEGFEDIRYEKSTDGIAKITINRPQV RNAFRPLTVKEMIQALADARYDDNIGVIILTGAGDKAFCSGGDQKVRGDYGGYKDDSG VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAADNAIFGQTGPKVG SFDGGWGASYMARIVGQKKAREIWFLCRQYDAKQALDMGLVNTVVPLADLEKETVRWC REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP DFSKFKRNP" misc_feature complement(2388694..2389521) /gene="menB" /locus_tag="SF2341" /note="dihydroxynaphthoic acid synthetase; Validated; Region: PRK07396" /db_xref="CDD:180958" misc_feature complement(order(2389072..2389074,2389081..2389086, 2389150..2389158,2389162..2389164,2389285..2389299, 2389309..2389311,2389408..2389410,2389414..2389416)) /gene="menB" /locus_tag="SF2341" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(2389150..2389152,2389291..2389293)) /gene="menB" /locus_tag="SF2341" /note="oxyanion hole (OAH) forming residues [active]" /db_xref="CDD:119339" misc_feature complement(order(2388886..2388891,2388898..2388900, 2388943..2388945,2388952..2388954,2388985..2388987, 2388994..2388999,2389003..2389008,2389012..2389017, 2389030..2389035,2389039..2389047,2389051..2389053, 2389069..2389080,2389114..2389125,2389186..2389188, 2389210..2389212)) /gene="menB" /locus_tag="SF2341" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene complement(2389563..2390321) /gene="yfbB" /locus_tag="SF2342" /db_xref="GeneID:1027241" CDS complement(2389563..2390321) /gene="yfbB" /locus_tag="SF2342" /note="Code: R; COG: COG0596" /codon_start=1 /transl_table=11 /product="2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase" /protein_id="NP_708149.1" /db_xref="GeneID:1027241" /translation="MILHAQAKHGKLGLPWLVFLHGFSGDCHEWQEVGEAFADYSRLY VDLLGHGGSAAISVDGFDDVTDLLRKTLVSYNILDFWLVGYSLGGRVAMMAACQGLAG LCGVIVEGGHPGLQNAEQRAERQRSDRQWAQRFRTEPLTAVFADWYQQPVFASLNDDQ RRELVALRSNNNGATLAAMLEATSLAVQPDLRANLSARTFAFYYLCGERDSKFRALAA ELAADCHVIPRAGHNAHRENPAGVIASLAQILRF" misc_feature complement(2389566..2390285) /gene="yfbB" /locus_tag="SF2342" /note="2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Provisional; Region: PRK11126" /db_xref="CDD:236855" gene complement(2390318..2391988) /gene="menD" /locus_tag="SF2343" /db_xref="GeneID:1027240" CDS complement(2390318..2391988) /gene="menD" /locus_tag="SF2343" /note="Code: H; COG: COG1165" /codon_start=1 /transl_table=11 /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase" /protein_id="NP_708150.2" /db_xref="GeneID:1027240" /translation="MSVSAFNRRWAAVILEALTRHGVRHICIAPGSRSTPLTLAAAEN SAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL LTADRPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLH AGGVHINCPFAEPLYGEMDDTGLSWQQRLGDWWQDDKPWLREAPRLESEKQRDWFFWR QKRGVVVAGRMSAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKATSEL QQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLDPAHHRGRRLIANIADWL ELHPAEKRQPWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRISDYLPEQGQLFVGNSL VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASGKPTLAIVGDLSALYDLN ALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAAMFELKY HHPQNWQELETAFADAWRTPTTTVIEMVVNDTDGAQTLQQLLAQVSHL" misc_feature complement(2390321..2391985) /gene="menD" /locus_tag="SF2343" /note="2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase [Coenzyme transport and metabolism]; Region: MenD; COG1165" /db_xref="CDD:440779" gene complement(2392077..2393147) /gene="menF" /locus_tag="SF2344" /db_xref="GeneID:1027236" CDS complement(2392077..2393147) /gene="menF" /locus_tag="SF2344" /note="Code: HQ; COG: COG1169" /codon_start=1 /transl_table=11 /product="isochorismate hydroxymutase 2" /protein_id="NP_708151.4" /db_xref="GeneID:1027236" /translation="MDQAQRFLRQHPEHADLRIWGLNAFDPSQGNLLLPRLEWRRCGG KATLRLTLFSESSLQHDAIQAKEFIATLVSIKPLPGLHLTTTREQHWPDKTGWTQLIE LATKTIAEGELDKVVLARATDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDGENAFL GSSPERLWRRRDKALRTEALAGTVANHPDDKQAQQLGEWLMADDKNQRENMLVVEDIC QRLQADTQTLDVLPPQVLRLRKVQHLRRCIWTSLNKADDVICLHQLQPTAAVAGLPRD LARQFIARHEPFTREWYAGSAGYLSLQQSEFCVSLRSAKISGNVVRLYAGAGIVRGSD PEQEWQEIDNKAAGLRTLLQME" misc_feature complement(2392080..2393147) /gene="menF" /locus_tag="SF2344" /note="menaquinone-specific isochorismate synthase; Provisional; Region: PRK15012" /db_xref="CDD:184974" gene complement(2393451..2393756) /gene="elaB" /locus_tag="SF2345" /db_xref="GeneID:1025525" CDS complement(2393451..2393756) /gene="elaB" /locus_tag="SF2345" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708152.1" /db_xref="GeneID:1025525" /translation="MSNQFGDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKAHAE KALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIGVGAAVGLVLGLLLARR" misc_feature complement(2393454..2393756) /gene="elaB" /locus_tag="SF2345" /note="stress response protein ElaB; Region: PRK10404" /db_xref="CDD:182432" gene complement(2393811..2394272) /gene="elaA" /locus_tag="SF2346" /db_xref="GeneID:1026561" CDS complement(2393811..2394272) /gene="elaA" /locus_tag="SF2346" /note="Code: R; COG: COG2153" /codon_start=1 /transl_table=11 /product="acyltransferase" /protein_id="NP_708153.1" /db_xref="GeneID:1026561" /translation="MIEWQDLHHSELSVSQLYALLQLRCAVFVVEQNCPYQDIDGDDL TGDNRHILGWKNDELVAYARILKSDDDLEPVVIGRVIVSEALRGEKVGQQLMSKTLET CTHHWPDKPVYLGAQAHLQNFYQSFGFIPVTEVYEEDGIPHIGMAREVIQA" misc_feature complement(2393814..2394272) /gene="elaA" /locus_tag="SF2346" /note="GNAT family N-acetyltransferase; Region: PRK10314" /db_xref="CDD:182373" misc_feature complement(order(2393994..2393999,2394027..2394035)) /gene="elaA" /locus_tag="SF2346" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 2394319..2395254 /gene="elaC" /locus_tag="SF2347" /db_xref="GeneID:1025507" CDS 2394319..2395254 /gene="elaC" /locus_tag="SF2347" /note="Code: R; COG: COG1234" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708154.3" /db_xref="GeneID:1025507" /translation="MKRDELMELIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFD CGEGTQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG IREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLEHPLECYGYRIEEHD KPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGD TGPCDAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITH VSSRYDDKGCQHLLRECRSIFPATELANDFTVFNV" misc_feature 2394343..2395251 /gene="elaC" /locus_tag="SF2347" /note="ribonuclease BN; Region: true_RNase_BN; TIGR02649" /db_xref="CDD:131697" misc_feature order(2394448..2394450,2394523..2394528,2394532..2394534, 2394538..2394543,2394757..2394762,2394970..2394972, 2395030..2395032,2395144..2395146) /gene="elaC" /locus_tag="SF2347" /note="putative active site [active]" /db_xref="CDD:293803" mobile_element 2395635..2396402 /mobile_element_type="insertion sequence:IS1" gene 2395690..2395965 /gene="insA" /locus_tag="SF2348" /db_xref="GeneID:1025523" CDS 2395690..2395965 /gene="insA" /locus_tag="SF2348" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708155.1" /db_xref="GeneID:1025523" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 2395711..>2395962 /gene="insA" /locus_tag="SF2348" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 2395992..2396387 /gene="insB" /locus_tag="SF2349" /db_xref="GeneID:1027243" CDS 2395992..2396387 /gene="insB" /locus_tag="SF2349" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708156.1" /db_xref="GeneID:1027243" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLKLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 2395995..2396384 /gene="insB" /locus_tag="SF2349" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 2397028..2397667 /gene="yfbL" /locus_tag="SF2350" /pseudo /db_xref="GeneID:1026760" misc_feature 2397028..2397667 /gene="yfbL" /locus_tag="SF2350" /note="Similar to Escherichia coli K12 aminopeptidase gi: 1788607 (326 aa). BLAST with identity of 96% in 213 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct." /pseudo gene 2397770..2398093 /gene="yfbM" /locus_tag="SF2351" /db_xref="GeneID:1025514" CDS 2397770..2398093 /gene="yfbM" /locus_tag="SF2351" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708157.1" /db_xref="GeneID:1025514" /translation="MGMIGYFAEIDSEKINQLLESTEKPLMDNIHDTLSGLRRLESLD RSELRKQFSIKRLNEMEIYPGVTFSEELEGQLFASIMLDMEKLISAYRRMLRQGNHAL TVIVG" misc_feature 2397770..2398081 /gene="yfbM" /locus_tag="SF2351" /note="Domain of unknown function (DUF1877); Region: DUF1877; pfam08974" /db_xref="CDD:430350" gene complement(2398160..2399437) /gene="nuoN" /locus_tag="SF2352" /db_xref="GeneID:1027239" CDS complement(2398160..2399437) /gene="nuoN" /locus_tag="SF2352" /note="Code: C; COG: COG1007" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I subunit N" /protein_id="NP_708158.4" /db_xref="GeneID:1027239" /translation="MDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNKDE FYLLVLIAALGGILLANANHLASLFLGIELISLPLFGLVGYAFRQKRSLEASIKYTIL SAAASSFLLFGMALVYAQSGDLSFVALGKNLGDGMLNEPLLLAGFGMMIVGLGFKLSL VPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAIRVVLAIIAF ASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQTGEMSMEAVGVYLAGYLFS SLGAFGVVSLMSSPYRGPDADSLFSYRGLFWHRPILAAVMTVMMLSLAGIPMTLGFIG KFYVLAVGVQAHLWWLVGAVVVGSAIGLYYYLRVAVSLYLHAPEQPGRDAPSNWQYSA GGIVVLISALLVLVLGVWPQPLISIVRLAMPLM" misc_feature complement(2398169..2399437) /gene="nuoN" /locus_tag="SF2352" /note="NADH-quinone oxidoreductase subunit NuoN; Region: PRK05777" /db_xref="CDD:235603" gene complement(2399624..2401153) /gene="nuoM" /locus_tag="SF2353" /db_xref="GeneID:1025519" CDS complement(2399624..2401153) /gene="nuoM" /locus_tag="SF2353" /note="Code: C; COG: COG1008" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase subunit M" /protein_id="NP_708159.1" /db_xref="GeneID:1025519" /translation="MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALSL QLWLQGGYSLTQSAGIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAV LCSWKEIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSG VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL PLFPNASAEFAPIAMWLGVIGIFYGAWMTFAQTDIKRLIAYTSVSHMGFVLIAIYTGS QLAYQGAVIQMIAHGLSAAGLFILCGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFA VATLGMPGTGNFVGEFMILFGSFQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKS QIASQELPGMSLRELFMILLLVVLLVLLGFYPQPILDTSHSAIGNIQQWFVNSVTTTR P" misc_feature complement(2399627..2401153) /gene="nuoM" /locus_tag="SF2353" /note="NADH:ubiquinone oxidoreductase subunit M; Reviewed; Region: PRK05846" /db_xref="CDD:235622" gene complement(2401317..2403158) /gene="nuoL" /locus_tag="SF2354" /db_xref="GeneID:1025512" CDS complement(2401317..2403158) /gene="nuoL" /locus_tag="SF2354" /note="Code: CP; COG: COG1009" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase subunit L" /protein_id="NP_708160.1" /db_xref="GeneID:1025512" /translation="MNMLALTIILPLIGFVLLAFSRGRWSENVSAIVGVGSVGLAALV TAFIGVDFFANGEQAYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMY ASWYMRGEEGYSRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTD PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFRDMVELAPAHFADGNNMLMWA TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT PEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYLCFLVGGAALSALPLV TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAVKG VTHSLPLIVLLILSTFVGALIVPPLQGVLPQTTELAHGSMLTLEITSGVVAVVGILLA AWLWLGKRSLVTSIANSAPGRLLSTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN SMMNIPAVLSRFAGKGLLLSENGYLRWYVASMSIGAVVVLALLMVLR" misc_feature complement(2401356..2403158) /gene="nuoL" /locus_tag="SF2354" /note="NADH:ubiquinone oxidoreductase subunit L; Reviewed; Region: PRK06590" /db_xref="CDD:235836" gene complement(2403155..2403457) /gene="nuoK" /locus_tag="SF2355" /db_xref="GeneID:1025502" CDS complement(2403155..2403457) /gene="nuoK" /locus_tag="SF2355" /note="Code: C; COG: COG0713" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase subunit K" /protein_id="NP_708161.1" /db_xref="GeneID:1025502" /translation="MIPLQHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG" misc_feature complement(2403158..2403457) /gene="nuoK" /locus_tag="SF2355" /note="NADH-quinone oxidoreductase subunit NuoK; Region: PRK05715" /db_xref="CDD:180218" gene complement(2403454..2404008) /gene="nuoJ" /locus_tag="SF2356" /db_xref="GeneID:1027237" CDS complement(2403454..2404008) /gene="nuoJ" /locus_tag="SF2356" /note="Code: C; COG: COG0839" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase subunit J" /protein_id="NP_708162.1" /db_xref="GeneID:1027237" /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLIISLLAISGVFF SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAILSAI MLVVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR EERAGEVLSNRKDDSAKRKTEEHA" misc_feature complement(2403460..2404008) /gene="nuoJ" /locus_tag="SF2356" /note="NADH-quinone oxidoreductase subunit J; Region: PRK06638" /db_xref="CDD:235844" gene complement(2404020..2404562) /gene="nuoI" /locus_tag="SF2357" /db_xref="GeneID:1025516" CDS complement(2404020..2404562) /gene="nuoI" /locus_tag="SF2357" /note="Code: C; COG: COG1143" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase subunit I" /protein_id="NP_708163.1" /db_xref="GeneID:1025516" /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC GLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG KDKGEAENEAKPIDVKSLLP" misc_feature complement(2404110..2404562) /gene="nuoI" /locus_tag="SF2357" /note="NADH-quinone oxidoreductase subunit NuoI; Region: PRK05888" /db_xref="CDD:235637" gene complement(2404577..2405554) /gene="nuoH" /locus_tag="SF2358" /db_xref="GeneID:1027245" CDS complement(2404577..2405554) /gene="nuoH" /locus_tag="SF2358" /note="Code: C; COG: COG1005" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase subunit H" /protein_id="NP_708164.1" /db_xref="GeneID:1027245" /translation="MSWISPELIEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQ NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVP VSPGWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTLSYEVFL GLSLMGVVAQAGSFNMTDIVNSQAHVWNVIPQFFGFITFAIAGVAVCHRHPFDQPEAE QELADGYHIEYSGMKFGLFFVGEYIGIVTISALMVTLFFGGWQGPLLPPFIWFALKTA FFMMMFILIRASLPRPRYDRVMSFGWKICLPLTLINLLVTAAVILWQAQ" misc_feature complement(2404598..2405554) /gene="nuoH" /locus_tag="SF2358" /note="NADH-quinone oxidoreductase subunit NuoH; Region: PRK06076" /db_xref="CDD:235692" gene complement(2405551..2408277) /gene="nuoG" /locus_tag="SF2359" /db_xref="GeneID:1025539" CDS complement(2405551..2408277) /gene="nuoG" /locus_tag="SF2359" /note="Code: C; COG: COG1034" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase subunit G" /protein_id="NP_708165.2" /db_xref="GeneID:1025539" /translation="MATIHVDGKEYEVNGADNLLEACLSLGLDIPYFCWHPALGSVGA CRQCAVKQYQNAEDTRGRLVMSCMTPASDGTFISIDDEEAKQFRESVVEWLMTNHPHD CPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCVRY YKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYNRK WDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVNLK DRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASVESNFALRELVGE ENFYTGIAHGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVALA VRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYRAP VEDQARLGFAIAHALDNSAPAVDGIEPELQNKIDVIVQALAGAKKPLIISGTNAGSIE VIQAAANVAKALKGRGADVGITMIARSVNSMGLGIMGGGSLEEALTELETGRADAVVV LENDLHRYASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSSASFAESDGTVINNE GRAQRFFQVYDPAYYDSKTVMLESWRWLHSLHSTLLSREVDWTQLDHVIDAVVAKIPE LAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDIDTMFTFSMEG NNQPTAHRSQVPFAWAPGWNSPQAWNKFQDEVGGKLRFGDPGVRLFETSENGLDYFTS VPARFQPQDGKWRIAPYYHLFGSDELSQRAPVFQSRMPQPYIKLNPADAAKLGVNAGT RVSFSYDGNTVTLPVEIAEGLTAGQVGLPMGMSGIAPVLAGAHLEDLKEAQQ" misc_feature complement(2406313..2408268) /gene="nuoG" /locus_tag="SF2359" /note="NADH-quinone oxidoreductase, chain G; Region: NuoG; TIGR01973" /db_xref="CDD:273904" misc_feature complement(2405617..2405850) /gene="nuoG" /locus_tag="SF2359" /note="C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain...; Region: MopB_CT_NDH-1_NuoG2-N7; cd02788" /db_xref="CDD:239189" gene complement(2408330..2409667) /gene="nuoF" /locus_tag="SF2360" /db_xref="GeneID:1026762" CDS complement(2408330..2409667) /gene="nuoF" /locus_tag="SF2360" /note="Code: C; COG: COG1894" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I subunit F" /protein_id="NP_708166.1" /db_xref="GeneID:1026762" /translation="MKNIIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG LSPDEIVNQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVNLRRAIAEATEAGLLGKNI MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNN VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILED YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIN MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW" misc_feature complement(2408333..2409667) /gene="nuoF" /locus_tag="SF2360" /note="NADH-quinone oxidoreductase subunit NuoF; Region: PRK11278" /db_xref="CDD:236891" gene complement(2409664..2410164) /gene="nuoE" /locus_tag="SF2361" /db_xref="GeneID:1027235" CDS complement(2409664..2410164) /gene="nuoE" /locus_tag="SF2361" /note="Code: C; COG: COG1905" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase subunit E" /protein_id="NP_708167.1" /db_xref="GeneID:1027235" /translation="MHENQQPQTEAFELSAAEREAIEHEMHHYEDPRAASIEALKIVQ KQRGWVPDGAIHAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHINGY QGIQAALEKKLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHAHLTPEAIPE LLERYK" misc_feature complement(2409667..2410125) /gene="nuoE" /locus_tag="SF2361" /note="NADH-quinone oxidoreductase subunit NuoE; Region: PRK07539" /db_xref="CDD:181024" misc_feature complement(order(2409769..2409777,2409895..2409897, 2409901..2409903)) /gene="nuoE" /locus_tag="SF2361" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:239362" misc_feature complement(order(2409754..2409756,2409766..2409768, 2409874..2409876,2409889..2409891)) /gene="nuoE" /locus_tag="SF2361" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:239362" gene complement(2410167..2411969) /gene="nuoC" /locus_tag="SF2362" /db_xref="GeneID:1025540" CDS complement(2410167..2411969) /gene="nuoC" /locus_tag="SF2362" /note="Code: C; COG: COG0649" /codon_start=1 /transl_table=11 /product="bifunctional NADH:ubiquinone oxidoreductase subunit C/D" /protein_id="NP_708168.1" /db_xref="GeneID:1025540" /translation="MVNNMTDLTAQEPAWQTRDHLDDPVIGELRNRFGPDAFTVQATR TGVPVVWIKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHREGLPAADFSVFYHL ISIDRNRDIMLKVALAENDLHVPTFTKLFPNANWYERETWDLFGITFDGHPNLRRIMM PQTWKGHPLRKDYPARATEFSPFELTKAKQDLEMEALTFKPEEWGMKRGTENEDFMFL NLGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIE YLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMT PVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLA SYEKAALQNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENF DFEIPVGGGVSDCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERT LQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGSTMSYRTRIRTPSY AHLQQIPAAIRGSLVSDLIVYLGSIDFVMSDVDR" misc_feature complement(2410170..2411897) /gene="nuoC" /locus_tag="SF2362" /note="bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional; Region: PRK11742" /db_xref="CDD:236965" gene complement(2412063..2412725) /gene="nuoB" /locus_tag="SF2363" /db_xref="GeneID:1027233" CDS complement(2412063..2412725) /gene="nuoB" /locus_tag="SF2363" /note="Code: C; COG: COG0377" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase subunit B" /protein_id="NP_708169.1" /db_xref="GeneID:1027233" /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLND MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQSERERKRGERIAVTNLRTPD EI" misc_feature complement(2412066..2412674) /gene="nuoB" /locus_tag="SF2363" /note="NADH-quinone oxidoreductase subunit NuoB; Region: PRK06411" /db_xref="CDD:235797" gene complement(2412741..2413184) /gene="nuoA" /locus_tag="SF2364" /db_xref="GeneID:1025504" CDS complement(2412741..2413184) /gene="nuoA" /locus_tag="SF2364" /note="Code: C; COG: COG0838" /codon_start=1 /transl_table=11 /product="NADH:ubiquinone oxidoreductase subunit A" /protein_id="NP_708170.1" /db_xref="GeneID:1025504" /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR SKNVPFESGIDSVGSARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE AAIFIFVLLAGLVYLVRIGALDWTPARSRRERMNPETNSIANRQR" misc_feature complement(2412807..2413169) /gene="nuoA" /locus_tag="SF2364" /note="NADH:ubiquinone oxidoreductase subunit A; Validated; Region: PRK06602" /db_xref="CDD:180638" gene complement(2413816..2414754) /gene="lrhA" /locus_tag="SF2365" /db_xref="GeneID:1025506" CDS complement(2413816..2414754) /gene="lrhA" /locus_tag="SF2365" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor LrhA" /protein_id="NP_708171.1" /db_xref="GeneID:1025506" /translation="MISANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ QMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT IGASDESADTILPFLLNRVSSVYPKLALDVRVKRNAYMAEMLESQEVDLMVTTHRPSA FKALNLRTSPTHWYCAAEYVLQKGEPIPLVLLDDPSPFRDMVLATLNKVDIPWRLAYV ASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLSGVDGLPPLPDTEYLLCYDPSSNNEL AQVIYQAMESYHNPWQYSPMSAPEGDDSLLIERDIE" misc_feature complement(2413825..2414754) /gene="lrhA" /locus_tag="SF2365" /note="DNA-binding transcriptional repressor LrhA; Provisional; Region: PRK15092" /db_xref="CDD:237907" gene 2415673..2416890 /locus_tag="SF2366" /db_xref="GeneID:1027308" CDS 2415673..2416890 /locus_tag="SF2366" /note="Code: E; COG: COG0436" /codon_start=1 /transl_table=11 /product="aminotransferase" /protein_id="NP_708172.1" /db_xref="GeneID:1027308" /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA PFGFDAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVEIARQHNLIIFADEIYDKILYDDA EHHSIAPLAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL CANVPAQHAIQTALGGYQSISEFITPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM FPKIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPRVDDIELSL SKFARFLSGYHQL" misc_feature 2415673..2416884 /locus_tag="SF2366" /note="aminotransferase AlaT; Validated; Region: PRK09265" /db_xref="CDD:181738" gene 2416974..2417573 /locus_tag="SF2367" /db_xref="GeneID:1025547" CDS 2416974..2417573 /locus_tag="SF2367" /note="Code: R; COG: COG1896" /codon_start=1 /transl_table=11 /product="5'-deoxynucleotidase" /protein_id="NP_708173.1" /db_xref="GeneID:1025547" /translation="MKQSHFFAHLSRLKLINRWPLMRNVRTENVSEHSLQVAMVAHAL AAIKNRKFGGNVNAERIALLAMYHDASEVLTGDLPTPVKYFNAQIAQEYKAIEKIAQQ KLVDMVPEELRDIFAPLIDEHAYSDEEKSLVKQADALCAYLKCLEELAAGNNEFLLAK TRLEATLEARRSQEMDYFMEVFVPSFHLSLDEISQDSPL" misc_feature 2416977..2417561 /locus_tag="SF2367" /note="5'-nucleotidase; Provisional; Region: PRK03826" /db_xref="CDD:235165" misc_feature 2417178..2417180 /locus_tag="SF2367" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:238032" gene complement(2417632..2419464) /gene="yfbS" /locus_tag="SF2368" /db_xref="GeneID:1025537" CDS complement(2417632..2419464) /gene="yfbS" /locus_tag="SF2368" /note="Code: P; COG: COG0471" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708174.1" /db_xref="GeneID:1025537" /translation="MNGELIWVLSLLAVAIVLFATGRVRMDAVALFVIVAFALSGTLT VPEVFSGFSDPNVVLIAALFIIGDGLVRTGVATVMGTWLVKVAGNSEIKMLVLLMLTV AGLGAFMSSTSVVAIFIPVVLSVAMRMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV VNSELLREGYHGFSFFSVTPIGLVVLVLGILYMLVMRFMLKGDTQTPQREGWTRRTFR DLIREYRLTGRARRLAIRPGSPMIGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVN GVSEFRARDVLLIDMSAADVDLRQFCSEQLLEPMVLRGEYFSDQALDVGMAEISLIPE SELIGKSVREIGFRTRYGLNVVGLKRNGVALEGSLADEPLLLGDIILVVGNWKLIGML AKQGRDFVALNLPEEVSEASPAHSQAPHAIFCLVLMVALMLTNEIPNPVAAIIACLLM GKFRCIDAESAYKSIHWPSIILIVGMMPFAVALQKTGGVALAVKGLMDIGGGYGPHMM LGCLFVLSAVIGLFISNTATAVLMAPIALAAAKTMGVSPYPFAMVVAMAASAAFMTPV SSPVNTLVLGPGNYSFSDFVKLGVPFTIIVMAVCVVMIPMLFPF" misc_feature complement(2417635..2419284) /gene="yfbS" /locus_tag="SF2368" /note="Di- and tricarboxylate antiporter [Carbohydrate transport and metabolism]; Region: CitT; COG0471" /db_xref="CDD:440239" misc_feature complement(2418598..>2418825) /gene="yfbS" /locus_tag="SF2368" /note="K+/H+ antiporter KhtSTU, c-di-AMP-binding regulatory subunit KhtT, contains RCK_C (TrkA_C) domain [Inorganic ion transport and metabolism, Signal transduction mechanisms]; Region: KhtT; COG0490" /db_xref="CDD:440256" misc_feature complement(2418280..>2418555) /gene="yfbS" /locus_tag="SF2368" /note="K+/H+ antiporter KhtSTU, c-di-AMP-binding regulatory subunit KhtT, contains RCK_C (TrkA_C) domain [Inorganic ion transport and metabolism, Signal transduction mechanisms]; Region: KhtT; COG0490" /db_xref="CDD:440256" gene complement(2419551..2420201) /gene="yfbT" /locus_tag="SF2369" /db_xref="GeneID:1025526" CDS complement(2419551..2420201) /gene="yfbT" /locus_tag="SF2369" /note="Code: R; COG: COG0637" /codon_start=1 /transl_table=11 /product="phosphatase" /protein_id="NP_708175.1" /db_xref="GeneID:1025526" /translation="MRCKGFLFDLDGTLVDSLPAVERAWSNWARRHGLAPEEVLAFIH GKQAITSLRHFMAGKSEADIAAEFTRLEQIEATETEGITALPGAIALLNHLNKAGIPW AIVTSGSMPVARARHKIAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLAPQECVV VEDAPAGVLSGLAAGCHVIAVNAPADTPRLNEVDLVLHSLEQITVTKQPNGDVIIQ" misc_feature complement(2419554..2420201) /gene="yfbT" /locus_tag="SF2369" /note="putative phosphatase; Provisional; Region: PRK11587" /db_xref="CDD:183215" gene complement(2420212..2420706) /locus_tag="SF2370" /db_xref="GeneID:1027316" CDS complement(2420212..2420706) /locus_tag="SF2370" /note="Code: S; COG: COG3013" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708176.1" /db_xref="GeneID:1027316" /translation="MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQTIIERGYGLQM RELDREFGELKEETCRTIIDIMDMYHALYVSWSNLQDQQSIDERRVTFLGFDAATEAR YLGYVRFMVNVEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQ IINA" misc_feature complement(2420215..2420706) /locus_tag="SF2370" /note="YfbU family protein; Region: PRK05445" /db_xref="CDD:180087" gene complement(2420789..2421244) /locus_tag="SF2371" /db_xref="GeneID:1025538" CDS complement(2420789..2421244) /locus_tag="SF2371" /note="Code: S; COG: COG3092" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708177.1" /db_xref="GeneID:1025538" /translation="MSTPDNRSVNFFSLFRRGQHYSKTWPLEKRLAPVFVENRVIKMT RYAIRFMPPIAVFTLCWQIALGGLLGPAVATALFALSLPMQGLWWLGKRSVTPLPPAI LNWFYEVRGKLQESGQVLAPVEGKPDYQALADTLKRAFKQLDKTFLDDL" misc_feature complement(2420792..2421220) /locus_tag="SF2371" /note="hypothetical protein; Provisional; Region: PRK01816" /db_xref="CDD:179338" gene 2421582..2422784 /gene="ackA" /locus_tag="SF2372" /db_xref="GeneID:1027226" CDS 2421582..2422784 /gene="ackA" /locus_tag="SF2372" /note="Code: C; COG: COG0282" /codon_start=1 /transl_table=11 /product="acetate kinase A/propionate kinase 2" /protein_id="NP_708178.2" /db_xref="GeneID:1027226" /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGEEYLSGLAECFHLPEARI KWKMDGNKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS VVIDESVIQGIKDAASFAPLHNPAHLIGIEEALKSFPQLKDKNVAVFDTAFHQTMPEE SYLYALPYNLYKEHGIRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDAINKLLTKESGL LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGAYTALMDGRLDAVAFTGGI GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA QDASRLTA" misc_feature 2421591..2422778 /gene="ackA" /locus_tag="SF2372" /note="acetate kinase A/propionate kinase 2; Reviewed; Region: PRK00180" /db_xref="CDD:234680" gene 2422859..2425003 /gene="pta" /locus_tag="SF2373" /db_xref="GeneID:1027244" CDS 2422859..2425003 /gene="pta" /locus_tag="SF2373" /codon_start=1 /transl_table=11 /product="phosphate acetyltransferase" /protein_id="NP_708179.1" /db_xref="GeneID:1027244" /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR TGGDAPDQTTTIVRANSSTTTAAEPLKMSYVEGLLSSNQKDVLMEEIVANYHANTKDA EVVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLKERIELTRNSFG GAKNTNITGVIVNKLNAPVDEQGRTRPDLSEIFDDSSKAKVNNVDPAKLQESSPLPVL GAVPWSFDLIATRAIDMARHLNATIINEGDINTRRVKSVTFCARSIPHMLEHFRAGSL LVTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNT NTWQTSLSLQSFNLEVPVDDHERIEKVQEYVANYINADWIESLTATSERSRRLSPPAF RYQLTELARKAGKRIVLPEGDEPRTVKAAAICAERGIATCVLLGNPAEINRVAASQGV ELGAGIEIVDPEVVRESYVGRLVELRKNKGMTETVAREQLEDNVVLGTLMLEQDEVDG LVSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQL AEIAIQSADSAAAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGP LQYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQG MRKPVNDLSRGALVDDIVYTIALTAIQSAQQQ" misc_feature 2422859..2424991 /gene="pta" /locus_tag="SF2373" /note="phosphate acetyltransferase; Reviewed; Region: PRK05632" /db_xref="CDD:235537" gene 2425172..2426713 /gene="yfcC" /locus_tag="SF2374" /db_xref="GeneID:1025535" CDS 2425172..2426713 /gene="yfcC" /locus_tag="SF2374" /note="Code: S; COG: COG1288" /codon_start=1 /transl_table=11 /product="S-transferase" /protein_id="NP_708180.4" /db_xref="GeneID:1025535" /translation="MQGNICAMSAIIESKPTRRWAMPDTLVIIFFVAILTSLATWVVP VGMFDSQEVQYQVDGQTKTRKVVDPHSFRILTNEAGEPEYHRVQLFTTGDERPGLMNF PFEGLTSGSKYGTAVGIIMFMLVIGGAFGIVMRTGTIDNGILALIRHTRGNEILFIPA LFILFSLGGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNP FCVVVAQGIAGVPVLSGSGLRIVVWVIATLIGLIFTMVYASRVKKNPLLSRVHESDRF FREKQADVEQRPFTFGDWLVLIVLTAVMVWVIWGVIVNAWFIPEIASQFFTMGLVIGI IGVVFRLNGMTVNTMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGNASVLNTIL NSIANAISGLDNAVAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVT VLAFQFGDGFSHIIYPTSASLMATLGVCRVDFRNWLKVGATLLGLLFIMSSVVVIGAQ LMGYH" misc_feature 2425193..2426710 /gene="yfcC" /locus_tag="SF2374" /note="putative basic amino acid antiporter YfcC; Region: PRK11588" /db_xref="CDD:236934" gene complement(2426746..2427288) /locus_tag="SF2375" /db_xref="GeneID:1026560" CDS complement(2426746..2427288) /locus_tag="SF2375" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="NUDIX hydrolase YfcD" /protein_id="NP_708181.1" /db_xref="GeneID:1026560" /translation="MEQRRLASTEWVDIVNEENEVIAQASREQMRAQCLRHRATYIVV HDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFAE HGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSGVCWLTPEEITARCDEFTPDSLKA LALWMKRNAKNEAVETETAE" misc_feature complement(2426749..2427288) /locus_tag="SF2375" /note="NUDIX hydrolase YfcD; Provisional; Region: PRK15393" /db_xref="CDD:185291" gene complement(2427346..2427897) /gene="yfcE" /locus_tag="SF2376" /db_xref="GeneID:1027305" CDS complement(2427346..2427897) /gene="yfcE" /locus_tag="SF2376" /note="Code: R; COG: COG0622" /codon_start=1 /transl_table=11 /product="phosphodiesterase" /protein_id="NP_708182.2" /db_xref="GeneID:1027305" /translation="MKLMFASDIHGSLPATERVVELFVQSGAQWLVILGDVLNHGPRN ALPEGYAPAKVAERLNEVAHKVIAVRGNCDSEVDQMMLHFPITAPWQQVLLEKQRLFL THGHLFGPENLPALNQNDVLVYGHTHLPVAEQRGEIFHFNPGSVSIPKGGNPAGYGML DNDVLSVIALNDQSIIAQVAINP" misc_feature complement(2427352..2427897) /gene="yfcE" /locus_tag="SF2376" /note="phosphodiesterase; Provisional; Region: PRK09453" /db_xref="CDD:181869" misc_feature complement(order(2427514..2427516,2427520..2427522, 2427586..2427588,2427679..2427684,2427790..2427792, 2427868..2427870,2427874..2427876)) /gene="yfcE" /locus_tag="SF2376" /note="active site" /db_xref="CDD:277320" misc_feature complement(order(2427514..2427516,2427520..2427522, 2427586..2427588,2427682..2427684,2427790..2427792, 2427868..2427870,2427874..2427876)) /gene="yfcE" /locus_tag="SF2376" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:277320" misc_feature complement(order(2427580..2427582,2427601..2427636, 2427676..2427690,2427697..2427699,2427808..2427813)) /gene="yfcE" /locus_tag="SF2376" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277320" gene complement(2427953..2428597) /gene="yfcF" /locus_tag="SF2377" /db_xref="GeneID:1025511" CDS complement(2427953..2428597) /gene="yfcF" /locus_tag="SF2377" /note="Code: O; COG: COG0625" /codon_start=1 /transl_table=11 /product="glutathione S-transferase" /protein_id="NP_708183.1" /db_xref="GeneID:1025511" /translation="MSKPAITLWSDAHFFSPYVLSAWVALQEKGLSFHIKTIDLDSGE HLQPTWQGYGQTRRVPLLQIDDFELSESSAIAEYLEDRFAPPTWERIYPLDLENRARA RQIQAWLRSDLMPIREERPTDVVFAGAKKAPLTAEGKASAEKLFAMAEHLLALGQPNL FGEWCIADTDLALMINRLVLHGDEVPERLVDYATFQWQRASVQRFIALSAKQSG" misc_feature complement(2427956..2428597) /gene="yfcF" /locus_tag="SF2377" /note="glutathione transferase; Region: PRK15113" /db_xref="CDD:185068" gene 2428733..2429380 /gene="yfcG" /locus_tag="SF2378" /db_xref="GeneID:1026763" CDS 2428733..2429380 /gene="yfcG" /locus_tag="SF2378" /note="Code: O; COG: COG0625" /codon_start=1 /transl_table=11 /product="GSH-dependent disulfide bond oxidoreductase" /protein_id="NP_708184.1" /db_xref="GeneID:1026763" /translation="MIDLYFAPTPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFL RISPNNKIPAIVDHSPADGGEPLSLFESAAILLYLAEKTGLFLSHETRERAATLQWLF WQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYS IADIACWPWVNAWTRLRIDLAMYPAVKNWHERIRSRPATGQALLKAQLGDERSDS" misc_feature 2428733..2429377 /gene="yfcG" /locus_tag="SF2378" /note="GSH-dependent disulfide bond oxidoreductase; Provisional; Region: PRK13972" /db_xref="CDD:172475" gene 2429437..2429799 /gene="folX" /locus_tag="SF2379" /db_xref="GeneID:1027228" CDS 2429437..2429799 /gene="folX" /locus_tag="SF2379" /note="Code: H; COG: COG1539" /codon_start=1 /transl_table=11 /product="D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase" /protein_id="NP_708185.1" /db_xref="GeneID:1027228" /translation="MAQPAAIIRIKNLRLRTFIGIKEEEINNRQDIVINVTIHYPADK ARTSEDINDALNYRTVTKNIIQHVENNRFSLLEKLTQDVLDIAREHHWVTYAEVEIDK LHALRYADSVSMTLSWQR" misc_feature 2429437..2429796 /gene="folX" /locus_tag="SF2379" /note="dihydroneopterin triphosphate 2'-epimerase; Region: folX; PRK11245" /db_xref="CDD:183053" misc_feature order(2429452..2429484,2429500..2429526,2429746..2429751, 2429758..2429784) /gene="folX" /locus_tag="SF2379" /note="homooctamer interface [polypeptide binding]; other site" /db_xref="CDD:238298" misc_feature order(2429494..2429502,2429509..2429511,2429656..2429667, 2429740..2429742,2429776..2429778) /gene="folX" /locus_tag="SF2379" /note="active site" /db_xref="CDD:238298" gene 2429820..2430713 /locus_tag="SF2380" /db_xref="GeneID:1027238" CDS 2429820..2430713 /locus_tag="SF2380" /note="Code: R; COG: COG1090" /codon_start=1 /transl_table=11 /product="sugar nucleotide epimerase" /protein_id="NP_708186.1" /db_xref="GeneID:1027238" /translation="MNIVITGGTGLIGRHLIPRLLELGHQITVVTRNPQKASSVLGPR VTLWQGLADQSNLNGVDAVINLAGEPIADKRWTHKQKERLCQSRWNITQKLVDLINAS DTPPSVLISGSATGYYGDLGEVVVTEEEPPHNEFTHKLCARWEEIACRAQSDKTRVCL LRTGVVLAPDGGILGKMLPPFRLGLGGPIGSGRQYLAWIHIDDMVNGILWLLDNELRG PFNMVSPYPVRNEQFAHALGHALHRPAILRVPTTAIRLLMGESSVLVLGGQRALPKRL EEAGFAFRWYDLEEALADVVR" misc_feature 2429823..2430710 /locus_tag="SF2380" /note="NAD dependent epimerase/dehydratase family enzyme [General function prediction only]; Region: YfcH; COG1090" /db_xref="CDD:440707" gene complement(2430761..2431651) /gene="yfcI" /locus_tag="SF2381" /db_xref="GeneID:1027263" CDS complement(2430761..2431651) /gene="yfcI" /locus_tag="SF2381" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708187.1" /db_xref="GeneID:1027263" /translation="MTISTTSTPHDAVFKSFLRHPDTARNFINIHLPAPLRKLCDLTT LKLEPNSFIDEDLRQYYSDLLWSVKTQEGVGYIYVVIEHQSKPEELMAFRMMRYSIAA MQNHLDAGYKELPLVIPMLFYHGCRSPYPYSLCWLDEFAEPAIARKIYSSAFPLVDIT VVPDDEIMQHRKMALLELIQKHIRQRDLLGLVDQIVSLLVTGNTNDRQLKALFNYVLQ TGDAQRFRAFIGEITERAPQEKEKLMTIADRLREEGAMQGKHEEALRIAQEMLDRGLD RELVMMVTRLSPDDLIAQSH" misc_feature complement(2430764..2431651) /gene="yfcI" /locus_tag="SF2381" /note="recombination-promoting nuclease RpnA; Region: PRK09857" /db_xref="CDD:182117" gene complement(2431848..2432621) /gene="hisP" /locus_tag="SF2382" /db_xref="GeneID:1027232" CDS complement(2431848..2432621) /gene="hisP" /locus_tag="SF2382" /note="Code: E; COG: COG1126" /codon_start=1 /transl_table=11 /product="histidine/lysine/arginine/ornithine ABC transporter ATP-binding protein" /protein_id="NP_708188.1" /db_xref="GeneID:1027232" /translation="MSENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGK STFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFN LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHV STHVIFLHQGKIEEEGAPEQLFGNPQSPRLQQFLKGSLK" misc_feature complement(2431851..2432621) /gene="hisP" /locus_tag="SF2382" /note="histidine ABC transporter ATP-binding protein HisP; Region: PRK10619" /db_xref="CDD:182592" gene complement(2432629..2433345) /gene="hisM" /locus_tag="SF2383" /db_xref="GeneID:1025532" CDS complement(2432629..2433345) /gene="hisM" /locus_tag="SF2383" /note="Code: E; COG: COG0765" /codon_start=1 /transl_table=11 /product="histidine/lysine/arginine/ornithine ABC transporter permease HisM" /protein_id="NP_708189.1" /db_xref="GeneID:1025532" /translation="MIEILHEYWKPLLWTDGYRFTGVAITLWLLILSVVIGGVLALFL AIGRVSSNKYIQFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTEFLNAFFRSGL NCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSTFKMYRCIILPSALRIAL PAYSNEVILMLHSTALAFTATVPDLLKIARDINAATYQPFTAFGIAAVLYLIISYVLI SLFRRAEKRWLQHVKPSSTH" misc_feature complement(2432644..2433345) /gene="hisM" /locus_tag="SF2383" /note="histidine ABC transporter permease HisM; Region: PRK15069" /db_xref="CDD:185029" misc_feature complement(order(2432692..2432694,2432701..2432706, 2432713..2432718,2432722..2432727,2432734..2432739, 2432767..2432772,2432809..2432814,2432821..2432832, 2432851..2432853,2432860..2432865,2432905..2432907, 2432956..2432958,2432965..2432970,2432980..2432982, 2432986..2432991,2432998..2433000,2433004..2433006, 2433010..2433015,2433109..2433111,2433115..2433120, 2433127..2433156,2433160..2433171,2433199..2433201, 2433214..2433219,2433226..2433231)) /gene="hisM" /locus_tag="SF2383" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2432815..2432832,2433109..2433153)) /gene="hisM" /locus_tag="SF2383" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(2432737..2432739,2432767..2432769, 2432776..2432778,2432812..2432814,2433028..2433030, 2433109..2433111)) /gene="hisM" /locus_tag="SF2383" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(2432884..2432886,2432896..2432901, 2432917..2432955)) /gene="hisM" /locus_tag="SF2383" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(2433342..2434028) /gene="hisQ" /locus_tag="SF2384" /db_xref="GeneID:1027272" CDS complement(2433342..2434028) /gene="hisQ" /locus_tag="SF2384" /note="Code: E; COG: COG0765" /codon_start=1 /transl_table=11 /product="histidine/lysine/arginine/ornithine ABC transporter permease HisQ" /protein_id="NP_708190.1" /db_xref="GeneID:1027272" /translation="MLYGFSGVILQGALVTLELAISSVVLAVIIGLIGAGGKLSQNRL SGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNMVTEAMGVGQIDIDPMVAGIITLGF IYGAYFTETFRGAFMAVPKGHIEAATAFGFTRGQVFRRIMFPAMMRYALPGIGNNWQV ILKSTALVSLLGLEDVVKATQLAGKSTWEPFYFAIVCGVIYLVFTTVSNGVLLFLERR YSVGVKRADL" misc_feature complement(2433345..2434028) /gene="hisQ" /locus_tag="SF2384" /note="histidine ABC transporter permease HisQ; Region: PRK15135" /db_xref="CDD:185089" misc_feature complement(order(2433411..2433416,2433423..2433428, 2433432..2433437,2433444..2433449,2433477..2433482, 2433519..2433524,2433531..2433542,2433561..2433563, 2433570..2433575,2433615..2433617,2433666..2433668, 2433675..2433680,2433690..2433692,2433696..2433701, 2433708..2433710,2433714..2433716,2433720..2433725, 2433822..2433824,2433828..2433833,2433840..2433869, 2433873..2433884,2433912..2433914,2433927..2433932, 2433939..2433944)) /gene="hisQ" /locus_tag="SF2384" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2433525..2433542,2433822..2433866)) /gene="hisQ" /locus_tag="SF2384" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(2433447..2433449,2433477..2433479, 2433486..2433488,2433522..2433524,2433738..2433740, 2433822..2433824)) /gene="hisQ" /locus_tag="SF2384" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(2433594..2433596,2433606..2433611, 2433627..2433665)) /gene="hisQ" /locus_tag="SF2384" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(2434105..2434899) /gene="hisJ" /locus_tag="SF2385" /db_xref="GeneID:1025550" CDS complement(2434105..2434899) /gene="hisJ" /locus_tag="SF2385" /note="Code: E; COG: COG0834" /codon_start=1 /transl_table=11 /product="histidine ABC transporter substrate-binding protein HisJ" /protein_id="NP_708191.1" /db_xref="GeneID:1025550" /translation="MKKLVLSLSLVLAFSSATAALAAIPQNIRIGTDPTYAPFESKNS QGELVGFDIELAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE IAFTDKLYAADSRLVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIV SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPSVKDEKLFGVGTG MGLRKEDNELREALNKAFAEMRADGTYEKLAKNTSILMFMVVNRHR" misc_feature complement(2434108..2434863) /gene="hisJ" /locus_tag="SF2385" /note="histidine ABC transporter substrate-binding protein HisJ; Provisional; Region: PRK15437" /db_xref="CDD:185334" gene complement(2435120..2435902) /gene="argT" /locus_tag="SF2386" /db_xref="GeneID:1027231" CDS complement(2435120..2435902) /gene="argT" /locus_tag="SF2386" /note="Code: E; COG: COG0834" /codon_start=1 /transl_table=11 /product="lysine/arginine/ornithine ABC transporter substrate-binding protein" /protein_id="NP_708192.1" /db_xref="GeneID:1027231" /translation="MKKSILALSLLVGLSAAASSYAALPETVRIGTDTTYALFSSKDA KGDFVGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE IAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGSTQEAYANETWRSKGVDVV AYANQDLVYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTG VGLRKDYAELTAAFNKALGELRQDGTYDKMAKKYFDFNVYGD" misc_feature complement(2435123..2435902) /gene="argT" /locus_tag="SF2386" /note="lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT; Region: PRK15010" /db_xref="CDD:184972" gene complement(2436168..2436737) /gene="ubiX" /locus_tag="SF2387" /db_xref="GeneID:1024406" CDS complement(2436168..2436737) /gene="ubiX" /locus_tag="SF2387" /note="Code: H; COG: COG0163" /codon_start=1 /transl_table=11 /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase" /protein_id="NP_708193.1" /db_xref="GeneID:1024406" /translation="MKRLIVGISGASGAIYGVRLLQVLRDVTDIETHLVMSQAARQTL SLETDFSLREVQALADVTLDARDISASISSGSFQTLGMVILPCSIKTLSGIVHSYTDG LLTRAADVVLKERRPLVLCVRETPLHLGHLRLMTQAAEIGAVIMPPVPAFYHRPQSLD DVINQTVNRVLDQFAITLPEDLFARWQGA" misc_feature complement(2436177..2436737) /gene="ubiX" /locus_tag="SF2387" /note="UbiX family flavin prenyltransferase; Region: PRK06029" /db_xref="CDD:235677" gene complement(2436832..2438349) /gene="purF" /locus_tag="SF2388" /db_xref="GeneID:1025528" CDS complement(2436832..2438349) /gene="purF" /locus_tag="SF2388" /note="Code: F; COG: COG0034" /codon_start=1 /transl_table=11 /product="amidophosphoribosyltransferase" /protein_id="NP_708194.1" /db_xref="GeneID:1025528" /translation="MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR LRKANGLVSDVFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAAT NRLIRGAYACVAMIIGHGMVAFRDPNGIRPLVLGKRDIDENRTEYMVASESVALDTLG FDFLRDVAPGEAIYITEEGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY LASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQIIGADGLIFQDLNDLIDAVRAE NPDIQQFECSVFNGVYVTKDVDQGYLDFLDTLRNDDAKAVQRQNEVENLEMHNEG" misc_feature complement(2436916..2438349) /gene="purF" /locus_tag="SF2388" /note="Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]; Region: PurF; COG0034" /db_xref="CDD:439804" gene complement(2438386..2438874) /gene="cvpA" /locus_tag="SF2389" /db_xref="GeneID:1027225" CDS complement(2438386..2438874) /gene="cvpA" /locus_tag="SF2389" /note="Code: R; COG: COG1286" /codon_start=1 /transl_table=11 /product="colicin V production protein" /protein_id="NP_708195.1" /db_xref="GeneID:1027225" /translation="MVWIDYAIIAVIAFSSLVSLIHGFVREALSLVTWGCAFFVASHY YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGV CFGALRGVLIVAAILFFLDSFTGVSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLP RA" misc_feature complement(2438392..2438874) /gene="cvpA" /locus_tag="SF2389" /note="colicin V production protein; Provisional; Region: PRK10845" /db_xref="CDD:182773" gene complement(2439133..2439768) /gene="dedD" /locus_tag="SF2390" /db_xref="GeneID:1025545" CDS complement(2439133..2439768) /gene="dedD" /locus_tag="SF2390" /note="Code: S; COG: COG3147" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_708196.4" /db_xref="GeneID:1025545" /translation="MGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLVPKAGDRDEP DMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPSLSAANNSEFQPEHAPVAPPKRKP VEPLKPKVEVPRARKPQQKPVVEEKAAPTGKAYVVHLGALKNADKVNEIVGKLRGAGY RVYTSPSTPVQGKITRILVGPDASKDKLKGSLGELKQLSGLSGVVMGYTPN" misc_feature complement(2439136..2439765) /gene="dedD" /locus_tag="SF2390" /note="cell division protein DedD; Provisional; Region: PRK11633" /db_xref="CDD:236940" gene complement(2439785..2441053) /gene="folC" /locus_tag="SF2391" /db_xref="GeneID:1025555" CDS complement(2439785..2441053) /gene="folC" /locus_tag="SF2391" /note="Code: H; COG: COG0285" /codon_start=1 /transl_table=11 /product="bifunctional folylpolyglutamate synthase/ dihydrofolate synthase" /protein_id="NP_708197.1" /db_xref="GeneID:1025555" /translation="MIIKRTPQAASPLASWLSYLENLHSKTIDLGLERVSQVAARLGV LKPAPFVFTVAGTNGKGTTCRTLESILMAAGYKVGVYSSPHLVRYTERVRVQGQELPE SAHTASFAEIESARGDISLTYFEYGTLSALWLFKQAQLDVVILEVGLGGRLDATNIVD ADVAVVTSIALDHTDWLGPDRESIGLEKAGIFRSEKPAIVGEPEMPSTIADVAQEKGA LLQRRGVEWNYSVTDHDWAFSDAHGTLENLPLPLVPQPNAATALAALRASGLEVSENA IRDGIASAILPGRFQIVSESPRVIFDVAHNPHAAEYLTGRMKALPKNGRVLAVIGMLH DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGNGKSFDSVAQAWDAAMADA KAEDTVLVCGSFHTVAHVMEVIDARRSGGK" misc_feature complement(2439806..2441053) /gene="folC" /locus_tag="SF2391" /note="bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional; Region: PRK10846" /db_xref="CDD:182774" gene complement(2441123..2442037) /gene="accD" /locus_tag="SF2392" /db_xref="GeneID:1025558" CDS complement(2441123..2442037) /gene="accD" /locus_tag="SF2392" /note="Code: I; COG: COG0777" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase carboxyltransferase subunit beta" /protein_id="NP_708198.2" /db_xref="GeneID:1025558" /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE VCPKCDHHMRMTARNRLHSLLDEGSLVELGSELEPKDELKFRDSKKYKDRLASAQKET GEKDALVVMKGTLYGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQAQEDNCPLICFS ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI AEPKALIGFAGPRVIEQTVREKLPPRFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK LMNLPAPNPEAPREGVVVPPVPDQEPEA" misc_feature complement(2441201..2442037) /gene="accD" /locus_tag="SF2392" /note="Acetyl-CoA carboxylase beta subunit [Lipid transport and metabolism]; Region: AccD; COG0777" /db_xref="CDD:440540" gene complement(2442193..2442852) /gene="dedA" /locus_tag="SF2393" /db_xref="GeneID:1025548" CDS complement(2442193..2442852) /gene="dedA" /locus_tag="SF2393" /note="Code: S; COG: COG0586" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708199.1" /db_xref="GeneID:1025548" /translation="MDLIYFLIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV VMPFLPGDSLLFVAGALASLETNDLNVHMMVVLMLIAAIVGDAVNYTIGRLFGEKLFS NPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN VIGALLWVLLFTYAGYFFGTIPMVQDNLKLLIVGIIVVSILPGVIEIIRHKRAAARAA K" misc_feature complement(2442196..2442852) /gene="dedA" /locus_tag="SF2393" /note="DedA family protein; Region: PRK10847" /db_xref="CDD:182775" gene complement(2442935..2443747) /gene="truA" /locus_tag="SF2394" /db_xref="GeneID:1025534" CDS complement(2442935..2443747) /gene="truA" /locus_tag="SF2394" /note="Code: J; COG: COG0101" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase A" /protein_id="NP_708200.1" /db_xref="GeneID:1025534" /translation="MSDQQQLPVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS QVANEPITVFCAGRTDAGVHGTGQVVHFETTAQRKDAAWTLGVNANLPGDIAVRWVKA VPDDFHARFSATARRYRYIIYNHRLRPAVLSKGVTHFYEPLDAERMHRAAQCLLGEND FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLMEVGAHN QPESWIAELLAAKDRTLAAATAKAEGLYLVAVDYPDRYDLPKPPMGPLFLAD" misc_feature complement(2442974..2443720) /gene="truA" /locus_tag="SF2394" /note="tRNA U38,U39,U40 pseudouridine synthase TruA [Translation, ribosomal structure and biogenesis]; Region: TruA; COG0101" /db_xref="CDD:439871" gene complement(2443747..2444760) /gene="usg" /locus_tag="SF2395" /db_xref="GeneID:1025533" CDS complement(2443747..2444760) /gene="usg" /locus_tag="SF2395" /note="Code: E; COG: COG0136" /codon_start=1 /transl_table=11 /product="semialdehyde dehydrogenase" /protein_id="NP_708201.1" /db_xref="GeneID:1025533" /translation="MSEGWNIAVLGATGAMGEALLETLAERQFPVGEIYALARNESAG EQLRFGGKTITVQDAAEFDWTQAQLAFFVAGKEATAAWVEEATNSGCLVIDSSGLFAL EPDVPLVVPEVNPFVLTDYRNRNVIAVPDSLTSQLLAALKPLIDQGGLSRISVTSLIS ASAQGKKAVDALAGQSAKLLNGIPIDEEDFFGRQLAFNMLPLLPDSEGSVREERRIVD EVRKILQDEGLMISASVVQAPVFYGHAQMVNFEALRPLAAEEARDAFAQGEDIVLSEE NEFPTQVGDASGTPHLSVGCVRNDYGMPEQVQFWSVADNVRFGGALMAVKIAEKLVQE YLY" misc_feature complement(2443750..2444760) /gene="usg" /locus_tag="SF2395" /note="putative semialdehyde dehydrogenase; Provisional; Region: PRK08040" /db_xref="CDD:181205" gene complement(2444826..2445962) /gene="pdxB" /locus_tag="SF2396" /db_xref="GeneID:1026764" CDS complement(2444826..2445962) /gene="pdxB" /locus_tag="SF2396" /note="Code: E; COG: COG0111" /codon_start=1 /transl_table=11 /product="erythronate-4-phosphate dehydrogenase" /protein_id="NP_708202.1" /db_xref="GeneID:1026764" /translation="MKILVDENMPYARDLFSRLGEVIAVPGRPIPVAQLADADALMVR SVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSS LLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADRGDEGDFRS LDELVQRADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALL TCLNEGQKLSVVLDVWEGEPELNVELLTKVDIGTPHIAGYTLEGKARGTTQVFEAYSK FIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVAGIPG EFDKLRKNYLERREWSSLYVICDDASAASLLCKLGFNAVHHPAR" misc_feature complement(2444829..2445962) /gene="pdxB" /locus_tag="SF2396" /note="erythronate-4-phosphate dehydrogenase PdxB; Provisional; Region: PRK15438" /db_xref="CDD:185335" gene 2446061..2447056 /gene="flk" /locus_tag="SF2397" /db_xref="GeneID:1027281" CDS 2446061..2447056 /gene="flk" /locus_tag="SF2397" /codon_start=1 /transl_table=11 /product="flagella biosynthesis regulator" /protein_id="NP_708203.1" /db_xref="GeneID:1027281" /translation="MIQPISGPPPGQPPGQGDNLPSGAGNQPLSSQQRTSLESLMTKV TSLTQQQRAELWAGIRHDIGLSGDSPLLSRHFPAAEHNLAQRLLAAQKSHSARQLLAQ LGEYLRLGNHRQAVTDYIRHNFGQTPLNQLSPEQLKTILTLLQEGKMVIPQPQQREAT DRPLLPAEHNALKQLVTKLAAATGEPSKQIWQSMLELSGVKDGELIPAKLFNHLVTWL QARQTLSQQNTPTLESLQMALKQPLDASELAALSAYIQQKYGLSAQSSLSSAQAEDIL NQLYQRRVKGIDPRDMQPLLNPFPPMMDTLQNMATRPALWILLVAIILMLVWLVR" misc_feature 2446112..2447050 /gene="flk" /locus_tag="SF2397" /note="flagella biosynthesis regulator Flk; Region: flk; PRK10715" /db_xref="CDD:182670" gene complement(2447053..2448231) /locus_tag="SF2398" /db_xref="GeneID:1025531" CDS complement(2447053..2448231) /locus_tag="SF2398" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708204.2" /db_xref="GeneID:1025531" /translation="MTAVSQTETRSSASFSLFRISFAVFLTYMTVGLPLPVIPLFVHH DLGYGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGGALLLAA ILPVSAPFKFALLVIGRLILGFGESQLLTGALTWGLGIVGPKHSGKVMSWNGMAIYGA LAVGAPLGLLIHSHYGFAALAITTMVLPLLAWACNGTVRKVPALAGERPSLWSVVGLI WKPGLGLALQGVGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVVMRVMFGWMPDRF GGVKVAIVSLLVETVGLLLLWQAPGAWVALAGAALTGAGCSLIFPALGVEVVKRVPSQ VRGTALGGYAAFQDIALGVSGPLAGMLATTFGYSSVFLAGAISAVLGIIVTILSFRRG " misc_feature complement(2447056..2448231) /locus_tag="SF2398" /note="putative transporter; Provisional; Region: PRK12382" /db_xref="CDD:183487" gene complement(2448486..2449727) /gene="fabB" /locus_tag="SF2399" /db_xref="GeneID:1025522" CDS complement(2448486..2449727) /gene="fabB" /locus_tag="SF2399" /note="Code: IQ; COG: COG0304" /codon_start=1 /transl_table=11 /product="3-oxoacyl-ACP synthase" /protein_id="NP_708205.1" /db_xref="GeneID:1025522" /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDSGM RSHVWGNIKLDTTGLIDRKVVRFMSDASIYAFLSMEQAIADAGLSPEAYQNNPRVGLI AGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIHGVNYSIS SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAYIYAEIVGYGATSDGADMVAPSGEG AVRCMQMAMHGVDTPIDYLNSHGTSTPVGDVKELAAIREVFGDKSPAISATKAMTGHS LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTDRELTTVMSNSFGF GGTNATLVMRKLKRLIRSRPE" misc_feature complement(2448513..2449727) /gene="fabB" /locus_tag="SF2399" /note="beta-ketoacyl-ACP synthase I; Region: PRK07967" /db_xref="CDD:181184" misc_feature complement(order(2448543..2448545,2448549..2448551, 2448891..2448893,2448927..2448941,2449116..2449121, 2449128..2449130,2449191..2449193,2449200..2449205, 2449212..2449214,2449248..2449256,2449260..2449262, 2449266..2449268,2449284..2449286,2449296..2449298, 2449308..2449310,2449326..2449328,2449365..2449370, 2449374..2449376,2449386..2449391,2449410..2449412)) /gene="fabB" /locus_tag="SF2399" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238430" misc_feature complement(order(2448729..2448731,2448834..2448836, 2449239..2449241)) /gene="fabB" /locus_tag="SF2399" /note="active site" /db_xref="CDD:238430" gene 2449826..2451892 /locus_tag="SF2400" /db_xref="GeneID:1025552" CDS 2449826..2451892 /locus_tag="SF2400" /note="Code: E; COG: COG0665" /codon_start=1 /transl_table=11 /product="peptidase" /protein_id="NP_708206.3" /db_xref="GeneID:1025552" /translation="MRSLTHIAKIEPPPVRRVTYVKHYSIQPANLEFNAEGTPVSRDF DDVYFSNDNGLEETRYVFLGGNQLEVRFPEHPHPLFVIAESGFGTGLNFLTLWKAFDQ FREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCHR LLLDESRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMA RLARPGGTLATFTSAGFVRRGLQEAGFTMQKRKGFGRKREMLCGVMEQTLPLPCSTPW FNRTGSSKREVAIIGGGIASALLSLALLRRGWQVALYCADEAPALGASGNRQGALYPL LSKHDEALNRFFSNAFTFARRFYDQLPVKFDHDWCGVTQLGWDEKSQHKIAQMLSMDL PAELAVAVEANAVEQITGVATNCSGITYPQGGWLCPAELTRNVLELAQQQGLQIYYQY QLQNLSRKDDCWLLNFAGDQQATHSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPT TPELAELKQVLCYDGYLTPQNPANQHHCIGASYHRGSEDTAYSEDDQQQNRQRLIDCF PQAQWAKEVDVSDKEARCGVRCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAP VFDDLFMFAALGSRGLCSAPLCAEILAAQMSDEPIPMDASTLAALNPNRLWVRKLLKG KAVKAG" misc_feature 2449889..2451883 /locus_tag="SF2400" /note="bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC; Region: mnmC; PRK01747" /db_xref="CDD:234978" gene complement(2452013..2452291) /locus_tag="SF2401" /db_xref="GeneID:1025557" CDS complement(2452013..2452291) /locus_tag="SF2401" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708207.1" /db_xref="GeneID:1025557" /translation="MIAEFESRILALIDGMVDHASDDELFASGYLRGHLTLAIAELES GDDHSAQAVHTTVSQSLEKAIGAGELSPRDQALVTDMWENLFQQASQL" misc_feature complement(2452031..2452285) /locus_tag="SF2401" /note="YfcL protein; Region: YfcL; pfam08891" /db_xref="CDD:430291" gene complement(2452325..2452873) /locus_tag="SF2402" /db_xref="GeneID:1027254" CDS complement(2452325..2452873) /locus_tag="SF2402" /note="Code: S; COG: COG3101" /codon_start=1 /transl_table=11 /product="transporting ATPase" /protein_id="NP_708208.1" /db_xref="GeneID:1027254" /translation="MNSTHHYEQLIEIFNSCFADEFNTRLIKGDDEPIYLPADAEVPY NRIVFAHGFYASAIHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQ AFDWLFCVAAGYPFNVSCDNLEGDFEPDRVVFQRRVHAQVMDYLTNGIPERPARFIKA LQNYYHTPELTAEQFPWPEALN" misc_feature complement(2452331..2452864) /locus_tag="SF2402" /note="Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway) [Translation, ribosomal structure and biogenesis]; Region: EpmC; COG3101" /db_xref="CDD:442335" gene complement(2452873..2453682) /gene="yfcA" /locus_tag="SF2403" /db_xref="GeneID:1027230" CDS complement(2452873..2453682) /gene="yfcA" /locus_tag="SF2403" /note="Code: R; COG: COG0730" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708209.1" /db_xref="GeneID:1027230" /translation="METFNSLFMVSPLLLGVLFFVAMLAGFIDSIAGGGGLLTIPALM AAGMSPANALATNKLQACGGSISATIYFIRRKVVSLSDQKLNIAMTFVGSMSGALLVQ YVQADVLRQILPILVICIGLYFLLMPKLGEEDRQRRMYGLPFALIAGGCVGFYDGFFG PAAGSFYALAFVMLCGFNLAKATAHAKLLNATSNIGGLLLFILGGKVIWATGFVMLVG QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSAKLLYDSHGQEILHWLGMN" misc_feature complement(2452876..2453673) /gene="yfcA" /locus_tag="SF2403" /note="hypothetical protein; Provisional; Region: PRK10621" /db_xref="CDD:182593" gene complement(2453682..2454506) /gene="mepA" /locus_tag="SF2404" /db_xref="GeneID:1025542" CDS complement(2453682..2454506) /gene="mepA" /locus_tag="SF2404" /codon_start=1 /transl_table=11 /product="penicillin-insensitive murein endopeptidase" /protein_id="NP_708210.1" /db_xref="GeneID:1025542" /translation="MNKTAIALLALLASSASLAATPWQKITQPVPGSAQSIGSFSNGC IVGADTLPIQSEHYQVMRTDQRRYFGHPDLVMFIQRLSSQVSNLGMGTVLIGDMGMPA GGRFNGGHASHQTGLDVDIFLQLPKTRWTSAQLLRPQALDLVSRDGKHVVSTLWKPEI FSLIKLAAQDKDVTRIFVNPAIKQQLCLDAGTDRDWLRKVRPWFQHRAHMHVRLRCPA DSLECEDQPLPPSGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPSCQALLDEHVI" misc_feature complement(2453691..2454446) /gene="mepA" /locus_tag="SF2404" /note="penicillin-insensitive murein endopeptidase; Reviewed; Region: mepA; PRK09429" /db_xref="CDD:236511" gene complement(2454510..2455595) /gene="aroC" /locus_tag="SF2405" /db_xref="GeneID:1027234" CDS complement(2454510..2455595) /gene="aroC" /locus_tag="SF2405" /note="Code: E; COG: COG0082" /codon_start=1 /transl_table=11 /product="chorismate synthase" /protein_id="NP_708211.2" /db_xref="GeneID:1027234" /translation="MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHD LDRRRPGTSRYTTQRREPDQVKILSGVFEGVTTGTSIGLLIENTDQRSQDYSAIKDVF RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM GDIPLEIKDWSLVEQNPFFCPDPDKIDALDELMRALKKEGDSIGAKVTVVASGVPAGL GEPVFDRLDADIAHALMSINAVKGVEIGDGFDVVALRGSQNRDEITKDGFQSNHAGGI FGGISSGQQIIAHMALKPTSSITVPGRTINRFGEEVEMITKGRHDPCVGIRAVPIAEA MLAIVLMDHLLRQRAQNADVKTDIPRW" misc_feature complement(2454513..2455574) /gene="aroC" /locus_tag="SF2405" /note="chorismate synthase; Validated; Region: PRK05382" /db_xref="CDD:235438" misc_feature complement(order(2454591..2454593,2454705..2454707, 2454714..2454725,2454729..2454731,2454750..2454758, 2454762..2454770,2454777..2454779,2454825..2454830, 2454840..2454845,2454849..2454854,2454861..2454875, 2454882..2454884,2454888..2454893,2454897..2454905, 2454912..2454917,2454921..2454923,2454933..2454941, 2454945..2454947,2454978..2454995,2455008..2455010, 2455194..2455196,2455218..2455223,2455251..2455265, 2455344..2455346,2455350..2455352,2455356..2455358, 2455362..2455367,2455386..2455391,2455395..2455400, 2455497..2455502,2455512..2455514,2455518..2455520, 2455524..2455526,2455545..2455565)) /gene="aroC" /locus_tag="SF2405" /note="Tetramer interface [polypeptide binding]; other site" /db_xref="CDD:143612" misc_feature complement(order(2454612..2454614,2454624..2454626, 2454705..2454713,2454717..2454722,2454879..2454884, 2455200..2455202,2455209..2455220,2455278..2455283, 2455452..2455454,2455539..2455541)) /gene="aroC" /locus_tag="SF2405" /note="active site" /db_xref="CDD:143612" misc_feature complement(order(2454615..2454617,2454624..2454626, 2454633..2454635,2454705..2454713,2454717..2454719, 2454879..2454887,2455215..2455217,2455221..2455223, 2455275..2455283)) /gene="aroC" /locus_tag="SF2405" /note="FMN-binding site [chemical binding]; other site" /db_xref="CDD:143612" gene complement(2455630..2456562) /gene="yfcB" /locus_tag="SF2407" /db_xref="GeneID:1027341" CDS complement(2455630..2456562) /gene="yfcB" /locus_tag="SF2407" /note="Code: J; COG: COG2890" /codon_start=1 /transl_table=11 /product="N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase" /protein_id="NP_708212.2" /db_xref="GeneID:1027341" /translation="MDKIFVDEAVNELQTIQDILRWSVSRFSAANIWYGHGTDNPWDE AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRVNERIPVAYLTNKAWFCGH EFYVDERVLVPRSPIGELINNKFAGLISKQPQHILDMCTGSGCIAIACAYAFPEAEVD AVDISPDALAVAEQNIEEHGLIHNVIPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD LPNEYRHEPELGLASGTDGLKLTRRILGNAADYLADDGVLICEVGNSMVHLMEQYPDV PFTWLEFDNGGDGVFMLTKEQLIAAREHFAIYKD" misc_feature complement(2455678..2456526) /gene="yfcB" /locus_tag="SF2407" /note="protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Region: L3_gln_methyl; TIGR03533" /db_xref="CDD:274633" gene 2456728..2457279 /locus_tag="SF2406" /db_xref="GeneID:1027302" CDS 2456728..2457279 /locus_tag="SF2406" /note="Code: S; COG: COG2840" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708213.1" /db_xref="GeneID:1027302" /translation="MKKKTTLSEEDQALFRQLMAGTRKIKQDTIVHRPQRKKISEVPV KRLIQEQADASHYFSDEFQPLLNTEGPVKYVRPDVSHFEAKKLRRGDYSPELFLDLHG LTQLQAKQELGALIAACRREHVFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK EYGGDAALLVLIEVEEWLPPELP" misc_feature 2456728..2457270 /locus_tag="SF2406" /note="endonuclease SmrB; Region: PRK04946" /db_xref="CDD:235321" gene complement(2457383..2458273) /locus_tag="SF2408" /db_xref="GeneID:1026765" CDS complement(2457383..2458273) /locus_tag="SF2408" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708214.1" /db_xref="GeneID:1026765" /translation="MSISEMKKWTIIFASLMLLVLSVVGASKSYAGDKLMSASFDSVR VYYAMDKVTGAVASSVFNVTVITPKEVAYGKYDSFAYKGDTLRVISWSGSGSAPTLVL TDFDTINNSNCPGIDTKIFRCAYMTFKITVASDDYGCPWIASFYSYTDLPGFGSYTAP TVHNTICPTIPVASYDISWSENYVSHNKALRIQSTGSTVTTTLSTYLMEGGRLCDGSN FSDNDGRGAYCRAVSELLTFTSYGCDKSTVTVTPTRHPVTDKVLHDIVVNVNTSSGQP IDSTCRFQYVLNELKFVVLL" misc_feature complement(2457404..2458087) /locus_tag="SF2408" /note="Protein of unknown function (DUF2544); Region: DUF2544; pfam11245" /db_xref="CDD:288142" gene complement(2458260..2458784) /locus_tag="SF2409" /db_xref="GeneID:1025543" CDS complement(2458260..2458784) /locus_tag="SF2409" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="fimbrial-like protein" /protein_id="NP_708215.1" /db_xref="GeneID:1025543" /translation="MKKKRTLFFISSLMLLGSGTTIAGDNLHFTGNLISKSCTPVING SQLAEVHFPAIAASDLMNLGQSERVPLVFQLKDCHSSTLFNVKVTLTGTEDSALPGFL AFDSSSSASGAGIGIETAAGTSVPINNTTGVTLPLNQGNNSLNFNTWLQAKSGRDVTS GDFSATVTATFEYF" misc_feature complement(2458263..2458784) /locus_tag="SF2409" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" gene complement(2458781..2459251) /locus_tag="SF2410" /db_xref="GeneID:1025544" CDS complement(2458781..2459251) /locus_tag="SF2410" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="minor fimbrial subunit" /protein_id="NP_708216.1" /db_xref="GeneID:1025544" /translation="MKRISLILLWGFCSMALSNVSFHGYLVQPPNCTISNAQTIEITF QDVLIDDINGSNYEQTVPYSITCDTAVRDPLMEMTLSWSGTPSDFDNAAVSSNITGLG IQLKQAGQSFTINTPLVVNETDLPVLTAVPVKKSGVILPEADFEAWATLQVDYQ" misc_feature complement(2458784..2459251) /locus_tag="SF2410" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" gene complement(2459248..2459796) /locus_tag="SF2411" /db_xref="GeneID:1027275" CDS complement(2459248..2459796) /locus_tag="SF2411" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="minor fimbrial subunit" /protein_id="NP_708217.1" /db_xref="GeneID:1027275" /translation="MKSRAAKAEAGRASMKGSCSVWAVTGLLICCVGSGFAVAASKSV SMNLRVLVDAPPPCTVNGAAVEFGNVFINKINRVDYKRPIDYSLVCNNLAMDDLRLQM QATTVVINGETVISTGIPGFGIRVQKSSDHTILDLTSGSWLPFNFSSGVPVLEAVPVK QSGTTLAAAEFNASATIVVDYQ" misc_feature complement(2459251..2459733) /locus_tag="SF2411" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" gene complement(2459771..2460523) /gene="yfcS" /locus_tag="SF2412" /pseudo /db_xref="GeneID:1024404" misc_feature complement(2459771..2460523) /gene="yfcS" /locus_tag="SF2412" /note="Similar to Escherichia coli K12 chaperone gi: 1788677 (251 aa). BLAST with identity of 88% in 250 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(2460543..2463183) /gene="yfcU" /locus_tag="SF2414" /pseudo /db_xref="GeneID:1026793" misc_feature complement(2461452..2463183) /gene="yfcU" /locus_tag="SF2414" /note="Similar to Escherichia coli K12 outer membrane protein gi: 1788679 (579 aa). BLAST with identity of 97% in 577 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2463265..2463828) /locus_tag="SF2415" /db_xref="GeneID:1025569" CDS complement(2463265..2463828) /locus_tag="SF2415" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="fimbrial-like protein" /protein_id="NP_708219.1" /db_xref="GeneID:1025569" /translation="MSKFVKTAIAAAMVMGVFTSTATIAAGNNGTARFYGTIEDSVCS IVPDDHKLEVDMGDIGAEKLKNNGTTTPKSFQIRLQDCVFDTQETMTTTFTGTVSSAN SGNYYTIFNTDTGAAFNNVSLAIGDSLGTSYKSGMGIDQKIVKDTSTNKGKAKQTLNF NAWLVGAADAPDLGNFEANTTFQITYL" misc_feature complement(2463268..2463828) /locus_tag="SF2415" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" mobile_element complement(2464082..2464849) /mobile_element_type="insertion sequence:IS1" gene complement(2464097..2464492) /gene="insB" /locus_tag="SF2416" /db_xref="GeneID:1025551" CDS complement(2464097..2464492) /gene="insB" /locus_tag="SF2416" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708220.1" /db_xref="GeneID:1025551" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(2464100..2464489) /gene="insB" /locus_tag="SF2416" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2464519..2464794) /gene="insA" /locus_tag="SF2417" /db_xref="GeneID:1025572" CDS complement(2464519..2464794) /gene="insA" /locus_tag="SF2417" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708221.1" /db_xref="GeneID:1025572" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<2464522..2464773) /gene="insA" /locus_tag="SF2417" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(2465289..2465774) /locus_tag="SF2418" /db_xref="GeneID:1025546" CDS complement(2465289..2465774) /locus_tag="SF2418" /note="Code: T; COG: COG2062" /codon_start=1 /transl_table=11 /product="phosphohistidine phosphatase" /protein_id="NP_708222.1" /db_xref="GeneID:1025546" /translation="MQVFIMRHGDAALDSASDSVRPLTTNGCDESRLMANWLKGQKVE IERVLVSPFLRAEQTLEEVGDCLNLPSSAEVLPELTPCGDVGLVSAYLQALTNEGVAS VLVISHLPLVGYLVAELCPGETPPMFTTSAIASVTLDESGNGTFNWQMSPCNLKMAKA I" misc_feature complement(2465319..2465774) /locus_tag="SF2418" /note="phosphohistidine phosphatase SixA; Region: sixA; TIGR00249" /db_xref="CDD:129351" misc_feature complement(order(2465448..2465453,2465610..2465612, 2465751..2465756)) /locus_tag="SF2418" /note="catalytic core [active]" /db_xref="CDD:132718" gene complement(2465977..2468121) /gene="fadJ" /locus_tag="SF2419" /db_xref="GeneID:1027221" CDS complement(2465977..2468121) /gene="fadJ" /locus_tag="SF2419" /codon_start=1 /transl_table=11 /product="multifunctional fatty acid oxidation complex subunit alpha" /protein_id="NP_708223.1" /db_xref="GeneID:1027221" /translation="MEMASAFTLNVRLDNIAIITIDVPDEKMNTLKAEFASQVRAIIK QLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPI PVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIG VSTALEMILTGKQLRAKQALKLGLVDDVVPHSILLEAAVELAKKDRPSSRPLPVRERI LAGPLGRALLFKMVGKKTEHKTQGNYPATERILEVVETGLAQGTSSGYDAEARAFGEL AMTPQSQALRSIFFASTDVKKDPGSDAPPAPLNSVGILGGGLMGGGIAYVTACKAGLP VRIKDINPQGINHALKYSWDQLEGKVRRRHLKASERDKQLALISGTTDYRGFAHRDLI IEAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHAARPEQVIGLHFFSP VEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKAGFYVNRILAPYINEAIR MLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV SSILNDDRKGRKNGRGFYLYGQKGRKSKKQVDPAIYPLIGAQGQGRLSAPQVAERCVM LMLNEAVRCVDEQVIRSVRDGDIGAVFGIGFPPFLGGPFRYIDSLGAGEVVAIMQRLA TQYGSRFTPCERLVEMGARGESFWKTTATDLQ" misc_feature complement(2465998..2468121) /gene="fadJ" /locus_tag="SF2419" /note="fatty acid oxidation complex subunit alpha FadJ; Region: fadJ; PRK11154" /db_xref="CDD:236864" gene complement(2468121..2469431) /gene="fadI" /locus_tag="SF2420" /db_xref="GeneID:1025570" CDS complement(2468121..2469431) /gene="fadI" /locus_tag="SF2420" /note="Code: I; COG: COG0183" /codon_start=1 /transl_table=11 /product="3-ketoacyl-CoA thiolase" /protein_id="NP_708224.1" /db_xref="GeneID:1025570" /translation="MGQVLPLVTRQGDRIAIVSGLRTPFARQATAFHGIPTVDLGKMV VGELLARSEIPAEVIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKKLAYVLVDVNKARTMSQRLKLF SRLRLRDLMPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWS DGKLKEEVMTAFIPPYKQPLVEDNNIRGNSSLADYAKLRPAFDRKHGTVTAANSTPLT DGATAVILMTESRAKELGLVPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTM SELTLIDMHEAFAAQTLANIQLLGSERFAREVLGRAHATGEVDDSKFNVLGGSIAYGH PFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE" misc_feature complement(2468124..2469407) /gene="fadI" /locus_tag="SF2420" /note="3-ketoacyl-CoA thiolase; Reviewed; Region: fadI; PRK08963" /db_xref="CDD:181597" gene complement(2469611..2469919) /locus_tag="SF2420a" /db_xref="GeneID:16608344" CDS complement(2469611..2469919) /locus_tag="SF2420a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439266.1" /db_xref="GeneID:16608344" /translation="MHIQRKSTMSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFAN RAEAEQTLAALTEKSRSVESEPCKISPTFTEESDGVRLDIDFTFACEAEMLIFQLGLR " misc_feature complement(2469614..2469901) /locus_tag="SF2420a" /note="Uncharacterized conserved protein YfcZ, UPF0381/DUF406 family [Function unknown]; Region: YfcZ; COG3691" /db_xref="CDD:442906" gene 2470267..2471607 /gene="fadL" /locus_tag="SF2421" /db_xref="GeneID:1027343" CDS 2470267..2471607 /gene="fadL" /locus_tag="SF2421" /note="Code: I; COG: COG2067" /codon_start=1 /transl_table=11 /product="long-chain fatty acid outer membrane transporter" /protein_id="NP_708225.2" /db_xref="GeneID:1027343" /translation="MSQKTLFTKSALAVAVALISTQAWSAGFQLNEFSSSGLGRAYSG EGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSGRSLKADNIAPTA WVPNMHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGAYR LNNAWSFGLGFNAIYARAKIERFAGDLGQLVAGQIMQSPAGQTPQGQALAATANGIDS NTKIAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLNRAFNNYG LPIPTATGGATQSGYLTLNLPEMWEVSGYNRVDPQWAIHYSLAYTSWSQFQQLKATST SGDTLFQKHEGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRF WLSAGTTYAFNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF" misc_feature 2470267..2471604 /gene="fadL" /locus_tag="SF2421" /note="long-chain fatty acid transporter FadL; Region: PRK10716" /db_xref="CDD:236741" mobile_element 2472012..2473340 /mobile_element_type="insertion sequence:iso-IS10R" gene 2472119..2473327 /locus_tag="SF2422" /db_xref="GeneID:1025554" CDS 2472119..2473327 /locus_tag="SF2422" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_708226.1" /db_xref="GeneID:1025554" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature 2472233..2473288 /locus_tag="SF2422" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene 2473302..2474369 /locus_tag="SF2423" /db_xref="GeneID:1026565" CDS 2473302..2474369 /locus_tag="SF2423" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708227.1" /db_xref="GeneID:1026565" /translation="MVTFWGNYEGISQSAAYPESINENNNDEINGLVQEFKNLFNGKE GISTCIKHLLELIKNAIRVNDDPYRSNINNSSVTYIDIGSNDTDHITIGIDNQEPIEL PANYKDKELVRTIINDNIVEKTHDINNKEMIFSALKEIYDGDPGFIFDKISHKLRHTV TEFDESGKSEPTDLFTWYGKDKKGDSLAIVIKNKNGNDYLSLGYYDQDDYHIQRGIRI NGDSLTQYCSENARSASAWFESSKAIMAESFATGSDHQVVNELNGERLREPNEVFKRL GRAIRYNFQVDDAKFRRDNVKEIISTLFANKVDVDHPENKYKDFKNLEDKVEKRLQNR QTKYQNEINQLSALGVNFDDI" gene complement(2474551..2475306) /gene="vacJ" /locus_tag="SF2424" /db_xref="GeneID:1024405" CDS complement(2474551..2475306) /gene="vacJ" /locus_tag="SF2424" /note="Code: M; COG: COG2853" /codon_start=1 /transl_table=11 /product="ABC transporter outer membrane lipoprotein" /protein_id="NP_708228.1" /db_xref="GeneID:1024405" /translation="MKLRLSALALGTTLLVGCASSGTDQQGRSDPLEGFNRTMYNFNF NVLDPYIVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAVMVNYFLQGDPYQGMVHFTR FFLNTILGMGGFIDVAGMANPKLQRTEPHRFGSTLGHYGVGYGPYVQLPFYGSFTLRD DGGDMADALYPVLSWLTWPMSVGKWTLEGIETRAQLLDSDGLLRQSSDPYIMVREAYF QRHDFIANGGELKPQENPNAQAIQDDLKDIDSE" misc_feature complement(2474554..2475306) /gene="vacJ" /locus_tag="SF2424" /note="phospholipid-binding lipoprotein MlaA; Region: PRK15091" /db_xref="CDD:185047" gene 2475600..2476532 /locus_tag="SF2425" /pseudogene="unknown" /db_xref="GeneID:1025549" gene 2476606..2476680 /locus_tag="SF4487" /db_xref="GeneID:3161769" tRNA 2476606..2476680 /locus_tag="SF4487" /product="tRNA-Arg" /codon_recognized="AGG" /db_xref="GeneID:3161769" gene 2476842..2477336 /locus_tag="SF2426" /db_xref="GeneID:1025566" CDS 2476842..2477336 /locus_tag="SF2426" /codon_start=1 /transl_table=11 /product="integrase" /protein_id="NP_708230.1" /db_xref="GeneID:1025566" /translation="MLTVKQIEAAKPKEKPYRLLDGNGLYLYVPVSGKKVWQLRYKID GKEKILTVGKYPLMTLQEARDKAWTARKDISAGIDPVKAKKASSNNNSFSAIYKEWYE HKKQVWSVGYATELAKMFDDDILPIIGGLEIQDIEPMQLLEVIRRFEDRGAIEVVNKN WPPS" misc_feature 2476842..>2477318 /locus_tag="SF2426" /note="Integrase/recombinase, includes phage integrase [Replication, recombination and repair, Mobilome: prophages, transposons]; Region: FimB; COG0582" /db_xref="CDD:440347" mobile_element complement(2477303..2478551) /mobile_element_type="insertion sequence:IS911" gene complement(2477311..2478150) /locus_tag="SF2427" /db_xref="GeneID:1025568" CDS complement(2477311..2478150) /locus_tag="SF2427" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_708231.1" /db_xref="GeneID:1025568" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature complement(2477320..2478129) /locus_tag="SF2427" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(2478177..2479065) /locus_tag="SF2428" /pseudogene="unknown" /db_xref="GeneID:1025564" mobile_element complement(2478549..2479149) /note="partial" /mobile_element_type="insertion sequence:IS4" gene 2479381..2480814 /locus_tag="SF2430" /db_xref="GeneID:1025260" CDS 2479381..2480814 /locus_tag="SF2430" /note="Code: G; COG: COG1621" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708234.2" /db_xref="GeneID:1025260" /translation="MTQSRLHAAQNALAKLHEHRGNTFYPHFHLAPPAGWMNDPNGLI WFNDRYHAFYQHHPMSEHWGPMHWGHATSDDMIHWQHEPIALALGDDNDKDGCFSGSA VDDNGVLSLIYTGHVWLDGAGNDDAIREVQCLATSRDGIHFEKQGVILTPPEGIMHFR DPKVWREADTWWMVVGAKDPGNTGQILLYRGSSLREWAFDRVLAHADAGESYMWECPD FFSLGDQHYLMFSPQGMNAEGYSYRNRFQSGVIPGMWSPGRLFAQSGHFTELDNGHDF YAPQSFLAKDGRRIVIGWMDMWESPMPSKREGWAGCMTLARELSESNGKLLQRPVHEA ESLRQQHQSVSPRRISNKYVLQENAQAVEIQLQWALKNSDAEHYGLQLGTGMRLYIDN QSERLILWRYYPHENLDGYRSIPLPQRDTLALRIFIDTSSVEVFINDGEAVMSSRIYP QPEERELSLYASHGVAVLQHGALWLLG" misc_feature 2479438..2480811 /locus_tag="SF2430" /note="Sucrose-6-phosphate hydrolase SacC, GH32 family [Carbohydrate transport and metabolism]; Region: SacC; COG1621" /db_xref="CDD:441228" gene complement(2480822..2481880) /locus_tag="SF2431" /db_xref="GeneID:1027331" CDS complement(2480822..2481880) /locus_tag="SF2431" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="sucrose specific repressor" /protein_id="NP_708235.2" /db_xref="GeneID:1027331" /translation="MDLASDVCFCYSARFTANGLGMASLKDVARLAGVSMMTVSRVMH NAESVRPATRDRVLQAIQTLNYVPDLSARKMRAQGRKPSTLAVLAQDTATTPFSVDIL LAIEQTASEFGWNSFLINIFSEDDAARAARQLLAHRPDGIIYTTMGLRHITLPESLYG ENIVLANCVADDPALPSYIPDDYTAQYESTQHLLAAGYRQPLCFWLPESALATGYRRQ GFEQAWRDAGRDLAEVKQFHMATGDDHYTDLASLLNAHFKSGKPDFDVLICGNDRAAF VAYQVLLAKGVRIPQDVAVMGFDNLVGVGHLFLPPLTTIQLPHDIIGREAALHIIEGR EGGRVTRIPCPLLIRCST" misc_feature complement(2481605..2481814) /locus_tag="SF2431" /note="helix_turn _helix lactose operon repressor; Region: HTH_LACI; smart00354" /db_xref="CDD:197675" misc_feature complement(order(2481653..2481658,2481662..2481667, 2481674..2481676,2481683..2481685,2481722..2481724, 2481731..2481736,2481749..2481751,2481758..2481763, 2481767..2481781,2481803..2481805)) /locus_tag="SF2431" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature complement(2481656..2481685) /locus_tag="SF2431" /note="domain linker motif [active]" /db_xref="CDD:143331" misc_feature complement(2480831..2481640) /locus_tag="SF2431" /note="Periplasmic binding proteins and sugar binding domain of LacI family; Region: Peripla_BP_1; pfam00532" /db_xref="CDD:395423" gene 2482028..2482246 /locus_tag="SF2432" /db_xref="GeneID:1025906" CDS 2482028..2482246 /locus_tag="SF2432" /note="Code: GE; COG: COG2610" /codon_start=1 /transl_table=11 /product="gluconate-like high-affinity transporter permease" /protein_id="NP_708236.1" /db_xref="GeneID:1025906" /translation="MLPLYPDISPEIIAIAIGSGAIGCTIVTDSLFWLVKQYCGATLN ETFKYYTTATFIASVVALAGTFLLSFII" misc_feature <2482028..2482243 /locus_tag="SF2432" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl21473" /db_xref="CDD:473875" gene 2482264..2483592 /gene="dsdA" /locus_tag="SF2433" /db_xref="GeneID:1025561" CDS 2482264..2483592 /gene="dsdA" /locus_tag="SF2433" /note="Code: E; COG: COG3048" /codon_start=1 /transl_table=11 /product="D-serine dehydratase" /protein_id="NP_708237.1" /db_xref="GeneID:1025561" /translation="MENAKMNSLIAQYPLVKDLVALKETTWFNPSTTSLAEGLPYVGL TEQDVQDAHARLSRFAPYLAKAFAETAATGGIIESELVAIPAMQKRLEKEYQQPISGQ LLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQ YSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGV AVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYL PCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNL TAADGLAVGRASCFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMA GPQRVCASVSYQQMHGFSAEQLRNATHLVWATGGGMVPEEEMNQYLAKGR" misc_feature 2482264..2483589 /gene="dsdA" /locus_tag="SF2433" /note="D-serine dehydratase [Amino acid transport and metabolism]; Region: DsdA; COG3048" /db_xref="CDD:442282" gene complement(2483700..2485238) /gene="emrY" /locus_tag="SF2434" /db_xref="GeneID:1025559" CDS complement(2483700..2485238) /gene="emrY" /locus_tag="SF2434" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="multidrug resistance protein Y" /protein_id="NP_708238.1" /db_xref="GeneID:1025559" /translation="MAITKSTPAPLTGGTLWCVTIALSLATFMQMLDSTISNVAIPTI SGFLGASTDEGTWVITSFGVANAIAIPVTGRLAQRIGELRLFLLSVTFFSLSSLMCSL STNLDVLIFFRVVQGLMAGPLIPLSQSLLLRNYPPEKRTFALALWSMTVIIAPICGPI LGGYICDNFSWGWIFLINVPMGIIVLTLCLTLLKGRETETSPVKMNLPRLTLLVLGVG GLQIMLDKGRDLDWFNSSTIIILTVVSVISLISLVIWESTSENPILDLSLFKSRNFTI GIVSITCAYLFYSGAIVLMPQLLQKTMGYNAIWAGLAYAPIGIMPLLISPLIGRYGNK IDMRVLVTFSFLMYAVCYYWRSVTFMPTIDFTGIILPQFFQGFAVACFFLPLTTISFS GLPDNKFANASSMSNFFRTLSGSVGTSLTMTLWGRRESLHHSQLTATIDQFNPVFNSS SQIMDKYYGSLSGVLNEINNEITQQSLSISANEIFRMAAIAFILLTVLVWFAKPPFTA KGVG" misc_feature complement(2483715..2485211) /gene="emrY" /locus_tag="SF2434" /note="multidrug efflux MFS transporter permease subunit EmrB; Region: EmrB; NF000391" /db_xref="CDD:411083" gene complement(2485238..2486401) /gene="emrK" /locus_tag="SF2435" /db_xref="GeneID:1025560" CDS complement(2485238..2486401) /gene="emrK" /locus_tag="SF2435" /note="Code: Q; COG: COG1566" /codon_start=1 /transl_table=11 /product="multidrug resistance protein K" /protein_id="NP_708239.1" /db_xref="GeneID:1025560" /translation="MEQINSNKKQSNRKKYFSLLVIVLFIAFSGAYAYWSMELEDMIS TDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLA NIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTL ISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLVLKRTDIRSPVTGY IAQRSVQVGETVSSGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENV VFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSM TATIDTKDEDIAEMPDLASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL" misc_feature complement(2485388..2486362) /gene="emrK" /locus_tag="SF2435" /note="efflux pump membrane protein (multidrug resistance protein A); Region: 8a0101; TIGR00998" /db_xref="CDD:273385" gene 2486817..2487431 /gene="evgA" /locus_tag="SF2436" /db_xref="GeneID:1025897" CDS 2486817..2487431 /gene="evgA" /locus_tag="SF2436" /note="Code: TK; COG: COG2197" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator EvgA" /protein_id="NP_708240.1" /db_xref="GeneID:1025897" /translation="MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIIIVSAKNDHFYGKHCADAGANGFVSK KEGMNNIIAAIEAAKNGYCYFPFSLNRFVGSLTSDQQKLDSLSKQEISVMRYILDGKD NNDIAEKMFISNKTVSTYKSRLMEKLECKSLMDLYTFAQRNKIG" misc_feature 2486817..2487428 /gene="evgA" /locus_tag="SF2436" /note="acid-sensing system DNA-binding response regulator EvgA; Region: PRK09958" /db_xref="CDD:182168" gene 2487436..2491029 /gene="evgS" /locus_tag="SF2437" /db_xref="GeneID:1025562" CDS 2487436..2491029 /gene="evgS" /locus_tag="SF2437" /codon_start=1 /transl_table=11 /product="hybrid sensory histidine kinase in two-component regulatory system with EvgA" /protein_id="NP_708241.1" /db_xref="GeneID:1025562" /translation="MKFLPYFFLLCCGLWSTISFADEDYIEYRGISSNNRVTLDPVRL SNKELRWLASKKNLVIAVHKSQTATLLHTDSQQQVRGINADYLNLLKRALNIKLTLRE YADHQKAMDALAEGEVDIVLSHLVTSPPLNNDIAATKPLIITFPALVTTLHDSMRPLT SPKPVNIARVANYPPDEVIHQSFPKATIISFTNLYQALASVSAGHNDYFIGSNIITSS MISRYFTHSLNVVKYYNSPRQYNFFLTRKESVILNEVLNRFVDALTNEVRYEVSQNWL DTGNLAFLNKPLELTEHEKQWIKQHPNLKVLENPYSPPYSMTDENGSVRGVMGDILNI ITLQTGLNFSPITVSHNIHAGTQLSPGGWDIIPGAIYSEDRENNVLFAEAFITTPYVF VMQKAPDSEQTLKKGMKVAIPYYYELHSQLKEMYPEVEWIQVDNASAAFHKIKEGELD ALVATQLNSRYMIDHYYPNELYHFLIPGVPNASLSFAFPRGEPELKDIINKALNAIPP SEVLRLTEKWIKMPNVTIDTWDLYSEQFYIVTTLSVLLVGSSLLWGFYLLRSVRRRKV IQGDLENQISFRKALSDSLPNPTYVVNWQGNVISHNSAFEHYFTADYYKNAMLPLENS DSPFKDVFSNAHEVTAETKENRTIYTQVFEIDNGIEKRCINHWHTLCNLPASDNAVYI CGWQDITETRDLINALEVEKNKAIKATVAKSQFLATMSHEIRTPISSIMGFLELLSGS GLSKEQRVEAISLAYATGQSLLGLIGEILDVDKIESGNYQLQPQWVDIPTLVQNTCHS FGAIAASKSIALSCSSTFPDHYLVKIDPQAFKQVLSNLLSNALKFTTEGAVKITTSLG HIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSAGRQQTGSGLGLMICKELIKNM QGDLSLESHPGIGTTFTITIPVEISQQVATVEAKAEQPITLPEKLSILIADDHPTNRL LLKRQLNLLGYDVDEATDGVQALHKVSMQHYDLLITDVNMPNMDGFELTRKLREQNSS LPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQVAHIAPQYRHLDI EALKNNTANDLQLMQEILMTFQHETHKDLPAAFHALEAGDNRTFHQCIHRIHGAANIL NLQKLINISHQLEITPASDDSKPEILQLLNSVKEHIAELDQEIAVFCQKND" misc_feature 2487436..2491026 /gene="evgS" /locus_tag="SF2437" /note="acid-sensing system histidine kinase EvgS; Region: PRK09959" /db_xref="CDD:182169" gene complement(2491085..2492230) /gene="yfdE" /locus_tag="SF2438" /db_xref="GeneID:1026767" CDS complement(2491085..2492230) /gene="yfdE" /locus_tag="SF2438" /note="Code: C; COG: COG1804" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708242.4" /db_xref="GeneID:1026767" /translation="MTNNESKGPFEGLLVIDMTHVLNGPFGTQLLYNMGARVIKVEPP GHGDDTRTFGPYVDGQSLYYSFINHGKESVVLDLKNDHDKSIFINMLKQADVLAENFR LGTMEKLGFSWERLQEINPRLIYASSSGFGHTGPLKDAPAYDTIIQAMSGIMMETGYP DAPPVRVGTSLADLCGGVYLFSGIVSALYGREKSQRGAHVDIAMFDATLSFLEHGLMA YIATGKSPQRLGNRHPYMAPFDVFDTQDKPITICCGNDKLFSALCQALELTELVNDPR FSSNILRVQNQAILKQYIERTLKTQAAEVWLAKIHEVGVPVAPLLSVAEAINLPQTQA RNMLIEAGGIMMPGNPIKISGCADPHVMPGAATLDQHGEQIRQEFSS" misc_feature complement(2491088..2492230) /gene="yfdE" /locus_tag="SF2438" /note="putative CoA-transferase; Provisional; Region: PRK11430" /db_xref="CDD:183132" gene complement(2492304..2493248) /gene="yfdV" /locus_tag="SF2439" /db_xref="GeneID:1027222" CDS complement(2492304..2493248) /gene="yfdV" /locus_tag="SF2439" /note="Code: R; COG: COG0679" /codon_start=1 /transl_table=11 /product="transporter YfdV" /protein_id="NP_708243.1" /db_xref="GeneID:1027222" /translation="MLTFFIGDLLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLNYA LPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFFSWFGCYKFFKRTHAEAAVCAL IAGSPTIGFLGFAVLDPIYGDSVSTGLVVAIISIIVNAITIPIGLYLLNPSSGADGKK NSNLSALISAAKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLT LAAHKFEFSAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGALPPAFSGII IASRFNVYTRTGTASLAVSVLGFVVTAPLWIYVSRLVS" misc_feature complement(2492307..2493248) /gene="yfdV" /locus_tag="SF2439" /note="transporter YfdV; Region: PRK09903" /db_xref="CDD:104216" gene complement(2493318..2495012) /locus_tag="SF2440" /db_xref="GeneID:1025565" CDS complement(2493318..2495012) /locus_tag="SF2440" /note="Code: EH; COG: COG0028" /codon_start=1 /transl_table=11 /product="oxalyl-CoA decarboxylase" /protein_id="NP_708244.1" /db_xref="GeneID:1025565" /translation="MSDQLQMTDGMHIIVEALKQNNIDTIYGVVGIPVTDMARHAQAE GIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPIIMI SGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPG GVYLDLPANVLAATMEKDEALTTIVKVENPSPALLPCPKSVTSAISLLAKAERPLIIL GKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARSFALANADVVML VGARLNWLLAHGKKGWAADTQFIQLDIEPQEIDSNRPIAVPVVGDIASSMQGMLAELK QNTFTTPLVWRDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLV NEGANTLDNARNIIDMYKPRRRLDCGTWGVMGIGMGYAIGASVTSGSPVVAIEGDSAF GFSGMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYDKLMDA FRGVGYNVTTTDELRHALTTGIQSRKPTIINVVIDPAAGTESGHITKLNPKQVAGN" misc_feature complement(2493336..2494997) /locus_tag="SF2440" /note="oxalyl-CoA decarboxylase; Region: oxalate_oxc; TIGR03254" /db_xref="CDD:132298" gene complement(2495066..2496316) /locus_tag="SF2441" /db_xref="GeneID:1025581" CDS complement(2495066..2496316) /locus_tag="SF2441" /note="Code: C; COG: COG1804" /codon_start=1 /transl_table=11 /product="formyl-coenzyme A transferase" /protein_id="NP_708245.1" /db_xref="GeneID:1025581" /translation="MSTPLQGIKVLDFTGVQSGPSCTQMLAWFGADVIKIERPGVGDV TRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKEVMEKLIREADILVENFHPGAI DHMGFTWEHIQEINPRLIFGSIKGFDECSPYVNVKAYENVAQAAGGAASTTGFWDGPP LVSAAALGDSNTGMHLLIGLLAALLHREKTGRGQRVTMSMQDAVLNLCRVKLRDQQRL DKLGYLEEYPQYPNGTFGDAVPRGGNAGGGGQPGWILKCKGWETDPNAYIYFTIQEQN WENTCKAIGKPEWITDPAYSTAHARQPHIFDIFAEIEKYTVTIDKHEAVAYLTQFDIP CAPVLSMKEISLDPSLRQSGSVVEVEQPLRGKYLTVGCPMKFSAFTPDIKAAPLLGEH TAAVLQELGYSDDEIAAMKQNHAI" misc_feature complement(2495069..2496316) /locus_tag="SF2441" /note="formyl-coenzyme A transferase; Provisional; Region: PRK05398" /db_xref="CDD:180055" gene complement(2496829..2497452) /locus_tag="SF2442" /db_xref="GeneID:1025574" CDS complement(2496829..2497452) /locus_tag="SF2442" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708246.1" /db_xref="GeneID:1025574" /translation="MKRLIMATMVTAILASSTVWAADNAPVAAQQQTQQTQKTAAAER ISEQGLYAMRDVQVARLALFHGDPEKAKELTNEASALLSDDSTEWAKFAKPGKKTNLN DDQYIVINASVGISESYVATPEKEAAIKIANEKMAKGDKKGAMEELRLAGVGVMENQY LMPLKQTRNALADAQKLLDKKQYYEANLALKGAEDGIIVDSEALFVN" misc_feature complement(2496832..2497452) /locus_tag="SF2442" /note="hypothetical protein; Provisional; Region: PRK10316" /db_xref="CDD:182374" gene 2497749..2498024 /locus_tag="SF2442a" /db_xref="GeneID:16608345" CDS 2497749..2498024 /locus_tag="SF2442a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439267.1" /db_xref="GeneID:16608345" /translation="MKVNLILFSLFLLVSIMACNVFAFSISGGVSERSYKETEKTSAM TTTHSTKLQPSQAILFKMREDVPPLNLTEEITPTYPTKANYLIHPVR" gene complement(2498101..2498343) /locus_tag="SF2443" /db_xref="GeneID:1027223" CDS complement(2498101..2498343) /locus_tag="SF2443" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708247.1" /db_xref="GeneID:1027223" /translation="MIYLWMFLALCIVCVSGYIGQVLNVVSAVSSFFGMVILAALIYY FTMWLTGGNELVTGIFMFLAPACGLMIRFMVGYGRR" misc_feature complement(2498104..2498343) /locus_tag="SF2443" /note="Protein of unknown function (DUF2545); Region: DUF2545; pfam10810" /db_xref="CDD:431506" gene 2498630..2499616 /gene="ddg" /locus_tag="SF2444" /db_xref="GeneID:1023448" CDS 2498630..2499616 /gene="ddg" /locus_tag="SF2444" /note="Code: N; COG: COG1560" /codon_start=1 /transl_table=11 /product="heat shock protein" /protein_id="NP_708248.3" /db_xref="GeneID:1023448" /translation="MSVPLSTWNLLRYNNSYLQKVTMFPQCKFSREFLHPRYWLTWFG LGVLWLWVQLPYPVLCFLGTRIGAMARPFLKRRESIARKNLELCFPQHSAEEREKMIA ENFRSLGMALVETGMAWFWPDSRVRKWFDVEGLDNLKRAQMQNRGVMVVGVHFMSLEL GGRVMGLCQPMMATYRPHNNQLMEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVW FAPDQDYGRKGSSFAPFFAVENVATTNGTYVLSRLSGAAMLTVTMVRKADYSGYRLFI TPEMEGYPTDENQAAAYMNKIIEKEIMRAPEQYLWIHRRFKTRPVGESSLYI" misc_feature 2498696..2499610 /gene="ddg" /locus_tag="SF2444" /note="kdo(2)-lipid IV(A) palmitoleoyltransferase; Region: PRK08025" /db_xref="CDD:181200" misc_feature order(2499089..2499091,2499098..2499100,2499104..2499106, 2499152..2499163,2499296..2499304) /gene="ddg" /locus_tag="SF2444" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153246" gene complement(2500107..2501345) /locus_tag="SF2445" /db_xref="GeneID:1027206" CDS complement(2500107..2501345) /locus_tag="SF2445" /note="Code: E; COG: COG0436" /codon_start=1 /transl_table=11 /product="aminotransferase" /protein_id="NP_708249.2" /db_xref="GeneID:1027206" /translation="MADTRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG NPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVEIDPESEAI VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKCYDVLVVHDLAYADIVY DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKI PEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENHDRIRQAIRGIKA MFRADGLLPVSSKHIHENAE" misc_feature complement(2500143..2501324) /locus_tag="SF2445" /note="aminotransferase; Validated; Region: PRK08175" /db_xref="CDD:181268" gene 2501722..2503208 /locus_tag="SF2446" /pseudo /db_xref="GeneID:1025909" misc_feature 2501722..2503208 /locus_tag="SF2446" /note="Similar to Escherichia coli K12 sensor protein gi: 1788723 (566 aa). BLAST with identity of 99% in 496 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct." /pseudo gene 2503223..2503957 /locus_tag="SF2447" /db_xref="GeneID:1027211" CDS 2503223..2503957 /locus_tag="SF2447" /note="Code: T; COG: COG3279" /codon_start=1 /transl_table=11 /product="2-component transcriptional regulator" /protein_id="NP_708250.2" /db_xref="GeneID:1027211" /translation="MKVIIVEDEFLAQQELSWLIKEHSQMEIVGTFDDGLDVLKFLQH NRVDAIFLDINIPSLDGVLLAQNISQFAHKPFIVFITAWKEHAVEAFELEAFDYILKP YQESRITGMLQKLEAAWQQQQTSSTPAATVTRENDTINLVKDERIIVTPINDIYYAEA HEKMTFVYTRRESYVMPMNITEFCSKLPPSHFFRCHRSFCVNLNKIREIEPWFNNTYI LRLKDLDFEVPVSRSKVKEFRQLMHL" misc_feature 2503223..2503945 /locus_tag="SF2447" /note="DNA-binding response regulator, LytR/AlgR family [Transcription, Signal transduction mechanisms]; Region: LytT; COG3279" /db_xref="CDD:442510" gene 2503970..2504827 /locus_tag="SF2448" /pseudo /db_xref="GeneID:1027215" misc_feature 2503970..2504827 /locus_tag="SF2448" /note="Similar to Escherichia coli K12 ARAC-type regulatory protein gi: 1788725 (286 aa). BLAST with identity of 97% in 286 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(2504830..2507325) /locus_tag="SF2449" /db_xref="GeneID:1025242" CDS complement(2504830..2507325) /locus_tag="SF2449" /note="Code: G; COG: COG1080" /codon_start=1 /transl_table=11 /product="PTS system transporter subunit IIA" /protein_id="NP_708251.1" /db_xref="GeneID:1025242" /translation="MLTIQFLCPLPNGLHARPAWELKEQCSQWQSEITFINHRQNAKA DAKSSLALIGTGTLFNDSCSLNISGSDEEQARRVLEEYILVRFIDSDSVQPTQAELTA HPLPRSLSRLNPDLLYGNVLASGVGVGTLTLLQSDSLDSYRAIPASAQDSTRLEHSLA TLAEQLNQQLRERDGESKTILSAHLSLIQDDEFAGNIRRLMTEQHQGLGAAIISNMEQ VCAKLSASASDYLRERVSDIRDISEQLLHITWPELKPRNNLVLEKPTILVAEDLTPSQ FLSLDLKNLAGMILEKTGRTSHTLILARASAIPVLSGLPLDAIARYAGQPAVLDAQCG VLAINPNDAVSGYYQVAQTLADKRQKQQAQAAAQLAYSRDNKRIDIVANIGTALEAPG AFANGAEGVGLFRTEMLYMDRDSAPDEQEQFEAYQQVLLAAGDKPIIFRTMDIGGDKS IPYLNIPQEENPFLGYRAVRIYPEFAGLFRTQLRAILRAASFGNAQLMIPMVHSLDQI LWVKGEIQKAIVELKRDGLRHAETITLGIMVEVPSVCYIIDHFCDEVDFFSIGSNDMT QYLYAVDRNNPRVSPLYNPITPSFLRMLQQIVTTAHQRGKWVGICGELGGESRYLPLL LGLGLDELSMSSPRIPAVKSQLRQLDSEACRELARQACECRSAQEIEALLTAFTPEED VRPLLALENIFVDQDFSNKEQAIQFLCGNLGVNGRTEHPFELEEDVWQREEIVTTGVG FGVAIPHTKSQWIRHSSISIARLAKPVDWQSEMGEVELVIMLTLGANEGMNHVKVFSQ LARKLVNKNFRQSLFAAQDAQSILTLLETELTF" misc_feature complement(2507077..2507313) /locus_tag="SF2449" /note="Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367" /db_xref="CDD:238217" misc_feature complement(2507302..2507313) /locus_tag="SF2449" /note="dimerization domain swap beta strand [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature complement(order(2507164..2507169,2507176..2507187, 2507245..2507247,2507254..2507256,2507266..2507271, 2507275..2507280,2507284..2507286)) /locus_tag="SF2449" /note="regulatory protein interface [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature complement(2507281..2507283) /locus_tag="SF2449" /note="active site" /db_xref="CDD:238217" misc_feature complement(2507182..2507184) /locus_tag="SF2449" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:238217" misc_feature complement(2505286..2506977) /locus_tag="SF2449" /note="Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]; Region: PtsA; COG1080" /db_xref="CDD:440698" misc_feature complement(2504890..2505270) /locus_tag="SF2449" /note="PTS system, fructose subfamily, IIA component; Region: fruA; TIGR00848" /db_xref="CDD:273298" misc_feature complement(order(2505085..2505087,2505133..2505135)) /locus_tag="SF2449" /note="active site" /db_xref="CDD:238129" misc_feature complement(2505085..2505087) /locus_tag="SF2449" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238129" gene complement(2507350..2508387) /locus_tag="SF2450" /db_xref="GeneID:1027213" CDS complement(2507350..2508387) /locus_tag="SF2450" /note="Code: G; COG: COG1363" /codon_start=1 /transl_table=11 /product="exoaminopeptidase" /protein_id="NP_708252.1" /db_xref="GeneID:1027213" /translation="MDLSLLKALSEADAIASSEQEVRQILLEEAARLQKEVRFDGLGS VLIRLNESTGPKVMICAHMDEVGFMVRSISREGAIDVLPVGNVRMAARQLQPVRITTR EECKIPGLLDGDRQGNDVSAMRVDIGARTYDEVMQAGIRPGDRVTFDTTFQVLPHQRV MGKAFDDRLSCYLLVTLLRELHDAELPAEVWLVASSSEEVGLRGGQTATRAVSPDVAI VLDTACWAKNFDYGAANHRQIGNGPMLVLSDKSLIAPPKLTAWIETVAAEIGVPLQAD MFSNGGTDGGAVHLTGTGVPTLVMGPATRHGHCAASIADCRDILQMEQLLSALIQRLT RETVVQLTDFR" misc_feature complement(2507356..2508387) /locus_tag="SF2450" /note="aminopeptidase; Region: PRK09961" /db_xref="CDD:182170" misc_feature complement(order(2507449..2507451,2507461..2507463, 2507470..2507475,2507521..2507523,2507557..2507559, 2507599..2507601,2507647..2507649,2507665..2507673, 2507767..2507772,2507779..2507781,2507905..2507907, 2507911..2507913,2507923..2507925,2507929..2507931, 2507959..2507964,2508004..2508012,2508016..2508018, 2508058..2508060,2508064..2508069,2508100..2508108, 2508142..2508144,2508175..2508183,2508259..2508261, 2508268..2508273,2508307..2508309,2508319..2508321, 2508334..2508342)) /locus_tag="SF2450" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:193517" misc_feature complement(order(2507464..2507469,2507542..2507547, 2507554..2507556,2507716..2507727,2507782..2507784, 2507791..2507796,2507890..2507892,2508202..2508204)) /locus_tag="SF2450" /note="active site" /db_xref="CDD:193517" gene complement(2508387..2509470) /locus_tag="SF2451" /pseudo /db_xref="GeneID:1025584" misc_feature complement(2508387..2509470) /locus_tag="SF2451" /note="Similar to Escherichia coli K12 peptidase gi: 1788728 (362 aa). BLAST with identity of 96% in 361 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(2509485..2510732) /locus_tag="SF2452" /db_xref="GeneID:1025577" CDS complement(2509485..2510732) /locus_tag="SF2452" /note="Code: G; COG: COG1299" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708253.1" /db_xref="GeneID:1025577" /translation="MAIKKRSATVVPGASGAAAAVKNLQASKSSFWGELPQHVMSGIS RMVPTLIMGGVILAFSQLIAYSWLKIPAEIGIMDALNSGKFSGFDLSLLKFAWLSQSF GGVLFGFAIPMFAAFVANSIGGKLAFPAGFIGGLMSTQPTQLLNFDPSTMQWATSSPV PSTFIGALIISIVAGYLVKWMNQKIQLPDFLLAFKTTFLLPILSAIFVMLAMYYVITP FGGWINGGIRTVLTAAGEKGALMYAMGIAAATAIDLGGPINKAAGFVAFSFTTDHVLP VTARSIAIVIPPIGLGLATIIDRRLTGKRLFNAQLYPQGKTAMFLAFMGISEGAIPFA LESPITAIPSYMVGAIVGSTAAVWLGAVQWFPESAIWAWPLVTNLGVYMAGIALGAII TALMVVFLRLMMFRKGKLLIDSL" misc_feature complement(2509530..>2510729) /locus_tag="SF2452" /note="Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]; Region: FrwC; COG1299" /db_xref="CDD:440910" gene complement(2510754..2511080) /locus_tag="SF2453" /db_xref="GeneID:1025578" CDS complement(2510754..2511080) /locus_tag="SF2453" /note="Code: G; COG: COG1445" /codon_start=1 /transl_table=11 /product="PTS system transporter subunit IIB" /protein_id="NP_708254.2" /db_xref="GeneID:1025578" /translation="MSKKLIALCACPMGLAHTFMAAQVLEEAAVEAGYEVKIETQGAD GIQNRLTAQDIAEATIIIHSVAVTPEDNERFESRDVYEITLQDAIKNAAGIIKEIEEM IASEQQ" misc_feature complement(2510775..2511071) /locus_tag="SF2453" /note="Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]; Region: FrwB; COG1445" /db_xref="CDD:441054" gene complement(2511299..2512264) /gene="glk" /locus_tag="SF2454" /db_xref="GeneID:1025571" CDS complement(2511299..2512264) /gene="glk" /locus_tag="SF2454" /note="Code: G; COG: COG0837" /codon_start=1 /transl_table=11 /product="glucokinase" /protein_id="NP_708255.1" /db_xref="GeneID:1025571" /translation="MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV IRVYLEEHKVEVKDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT AVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLGVAHLVHVDKRWVSLPGEGGH VDFAPNSEEEAIILEILRAEIGHVSAERVLSGPGLVNLYRAIVKADNRLPENLKPKDI TERALADSCTDCRRALSLFCVIMGRFGGNLALNLGTFGGVFIAGGIVPRFLEFFKASG FRAAFEDKGRFKEYVHDIPVYLIVHDYPGLLGSGAHLRQTLGHIL" misc_feature complement(2511317..2512261) /gene="glk" /locus_tag="SF2454" /note="glucokinase; Provisional; Region: glk; PRK00292" /db_xref="CDD:234716" gene 2512468..2513724 /locus_tag="SF2455" /db_xref="GeneID:1027214" CDS 2512468..2513724 /locus_tag="SF2455" /note="Code: P; COG: COG0038" /codon_start=1 /transl_table=11 /product="ion channel protein" /protein_id="NP_708256.1" /db_xref="GeneID:1027214" /translation="MLHPRARTMLLLSLPAVAIGIASSLILIVVMKIASVLQNLLWQR LPGTLGIAQDSPLWIIGVLTLTGIAVGLVIRFSQGHAGPDPACEPLIGAPVPPSALPR LIVALILGLAGGVSLGPEHPIMTVNIALAVAIGARLLPRVNRMEWTILASAGTIGALF GTPVAAALIFSQTLNGSSEVPLWDRLFAPLMAAAAGALTTGLFFHPHFSLPIAHYGQM EMTDILSGAIVAAIAIAAGMVAVWCLPRLHAMMNQMKNPVLVLGIGGFILGILGVIGG PVSLFKGLDEMQQMVANQAFSTSDYFLLAVIKLAALVVAAASGFRGGRIFPAVFVGVA LGLMLHEHVPAVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPNTTLLPLLCIVML PAWLLLAGKPMMMVNRPKQQPPHDNV" misc_feature 2512468..2513709 /locus_tag="SF2455" /note="putative ion channel protein; Provisional; Region: PRK03655" /db_xref="CDD:235148" misc_feature order(2512720..2512734,2512819..2512833,2513434..2513448) /locus_tag="SF2455" /note="Cl- selectivity filter [active]" /db_xref="CDD:238233" misc_feature order(2512723..2512725,2512729..2512731,2512825..2512830, 2513434..2513442) /locus_tag="SF2455" /note="Cl- binding residues [ion binding]; other site" /db_xref="CDD:238233" misc_feature 2512825..2512827 /locus_tag="SF2455" /note="pore gating glutamate residue [active]" /db_xref="CDD:238233" misc_feature order(2512957..2512959,2512984..2512986,2513038..2513040, 2513059..2513061,2513560..2513562,2513569..2513571, 2513593..2513595,2513617..2513619,2513638..2513643) /locus_tag="SF2455" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238233" gene 2513839..2514165 /locus_tag="SF2456" /db_xref="GeneID:1027208" CDS 2513839..2514165 /locus_tag="SF2456" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708257.1" /db_xref="GeneID:1027208" /translation="MFRSLFLAAALMAFTPLAANAGEITLLPSIKLQIGDRDHYGNYW DGGHWRDRDYWHRNYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGKGR GHGHRH" misc_feature 2513905..2514156 /locus_tag="SF2456" /note="Protein of unknown function (DUF2502); Region: DUF2502; pfam10697" /db_xref="CDD:431443" gene complement(2514306..2515544) /gene="mntH" /locus_tag="SF2457" /db_xref="GeneID:1027216" CDS complement(2514306..2515544) /gene="mntH" /locus_tag="SF2457" /note="Code: P; COG: COG1914" /codon_start=1 /transl_table=11 /product="manganese transport protein MntH" /protein_id="NP_708258.1" /db_xref="GeneID:1027216" /translation="MTNYRVESSSGRAARKMRLALMGPAFIAAIGYIDPGNYATNIQA GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL LLFVAAAYIVELIFSQPNLAQLGKGMVIPSLPTSEAVFLAAGVLGATIMPHVIYLHSS LTQHLHGGSRQQRYSATKWDVAIAMTIAGFVNLVMMATAAAAFHFSGHTGVADLDEAY LTLQPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFIRFHIPLWVRRTVTMLP SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSDSKLMGDLVNSKRVKQTGWV IVVLVVALNIWLLVGTALGL" misc_feature complement(2514309..2515544) /gene="mntH" /locus_tag="SF2457" /note="divalent metal cation transporter MntH; Region: PRK00701" /db_xref="CDD:234815" gene 2515880..2517082 /gene="nupC" /locus_tag="SF2458" /db_xref="GeneID:1025575" CDS 2515880..2517082 /gene="nupC" /locus_tag="SF2458" /note="Code: F; COG: COG1972" /codon_start=1 /transl_table=11 /product="nucleosides permease" /protein_id="NP_708259.2" /db_xref="GeneID:1025575" /translation="MDRVLHFVLALAVVVILALLVSSDRKKIRIRYVIQLLVIEVLLA WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS ALIGILQHIRVLPVIIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGK ISRNRMYTMAATAMSTVSMSIVGAYMTMLEPKYVVAALVLNMFSTFIVLSLINPYRVD ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTG WFGYSISFQGILGYIFYPIAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST LSPRAEGIISVFLVSFANFSSIGIIAGAVKGLNEEQGNVVSRFGLKLVYGSTLVSVLS ASIAALVL" misc_feature 2515889..2517079 /gene="nupC" /locus_tag="SF2458" /note="Nucleoside permease NupC [Nucleotide transport and metabolism]; Region: NupC; COG1972" /db_xref="CDD:441575" gene complement(2517442..2519360) /gene="yfeA" /locus_tag="SF2459" /pseudo /db_xref="GeneID:1027219" misc_feature complement(2517442..2519360) /gene="yfeA" /locus_tag="SF2459" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788739 (769 aa). BLAST with identity of 99% in 639 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(2519452..2519527) /locus_tag="SF4488" /db_xref="GeneID:3161815" tRNA complement(2519452..2519527) /locus_tag="SF4488" /product="tRNA-Ala" /codon_recognized="GCC" /db_xref="GeneID:3161815" gene complement(2519567..2519642) /locus_tag="SF4489" /db_xref="GeneID:3161819" tRNA complement(2519567..2519642) /locus_tag="SF4489" /product="tRNA-Ala" /codon_recognized="GCC" /db_xref="GeneID:3161819" gene 2519878..2520222 /gene="yfeC" /locus_tag="SF2460" /db_xref="GeneID:1027209" CDS 2519878..2520222 /gene="yfeC" /locus_tag="SF2460" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708260.2" /db_xref="GeneID:1027209" /translation="MTPDELARLTGYSRQTINKWVRKEGWTTSPKPGVQGGKARLVHV NEQVREYIRNAERPEGQGEAPALSGDAPLEVLLVTLAKEMTPVEQKQFTSLLLREGII GLLQRLGIRDSK" misc_feature 2519878..2520216 /gene="yfeC" /locus_tag="SF2460" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:470628" gene 2520245..2520622 /gene="yfeD" /locus_tag="SF2461" /db_xref="GeneID:1027217" CDS 2520245..2520622 /gene="yfeD" /locus_tag="SF2461" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708261.1" /db_xref="GeneID:1027217" /translation="MTTEELAECLGVAKQTVNRWTREKGWKTEKFPGVKGGRARLILV DTQVCEFIQNTPAFHNTPMLMEAEERIAEYAPGARAPAYRQIINAIDNMTDIEQEKVA QFLSREGIIIRNFLARLDIDESA" misc_feature 2520245..2520616 /gene="yfeD" /locus_tag="SF2461" /note="Putative transcription regulator (DUF1323); Region: DUF1323; pfam07037" /db_xref="CDD:399786" gene complement(2520674..2522089) /gene="gltX" /locus_tag="SF2462" /db_xref="GeneID:1025573" CDS complement(2520674..2522089) /gene="gltX" /locus_tag="SF2462" /note="Code: J; COG: COG0008" /codon_start=1 /transl_table=11 /product="glutamyl-tRNA synthetase" /protein_id="NP_708262.1" /db_xref="GeneID:1025573" /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARNHGGEFVLRIEDT DLERSTPEAIEAIMDGMNWLSLEWDEGPYYQTKRFDRYNAVIDQMLEEGTAYKCYCSK ERLEALREEQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQEGSVVFDDQIRGPI EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALK APVPVYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSHGDQEI FTREEMIKYFTLNAVSKSASAFNTDKLLWLNHHYINALPPEYVATHLQWHIEQENIDT RNGPQLADLVKLLGERCKTLKEMAQSCRYFYEDFAEFDADARKKHLRPVARQPLEVVR DKLAAITDWPAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGK TRSIERINKALDFIAERENQQ" misc_feature complement(2520692..2522086) /gene="gltX" /locus_tag="SF2462" /note="glutamyl-tRNA synthetase, bacterial family; Region: gltX_bact; TIGR00464" /db_xref="CDD:273092" gene 2522348..2522423 /locus_tag="SF4490" /db_xref="GeneID:3161793" tRNA 2522348..2522423 /locus_tag="SF4490" /product="tRNA-Val" /codon_recognized="GUA" /db_xref="GeneID:3161793" gene 2522467..2522542 /locus_tag="SF4491" /db_xref="GeneID:3161845" tRNA 2522467..2522542 /locus_tag="SF4491" /product="tRNA-Val" /codon_recognized="GUA" /db_xref="GeneID:3161845" gene 2522547..2522622 /locus_tag="SF4492" /db_xref="GeneID:3161792" tRNA 2522547..2522622 /locus_tag="SF4492" /product="tRNA-Lys" /codon_recognized="AAA" /db_xref="GeneID:3161792" gene 2522898..2523239 /gene="flxA" /locus_tag="SF2463" /db_xref="GeneID:1025595" CDS 2522898..2523239 /gene="flxA" /locus_tag="SF2463" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708263.1" /db_xref="GeneID:1025595" /translation="MATISSTSIPSIQTQSSNRASQGSDVASQIARISQQIIKLTQQI KEIVDTSGSAEDKQKQAELIQQQITLLETQLAQLQKQQAEKAQEKEQRLSLNVSLLNP VEKTTHIDIYI" misc_feature 2522931..2523173 /gene="flxA" /locus_tag="SF2463" /note="FlxA-like protein; Region: FlxA; pfam14282" /db_xref="CDD:433836" gene complement(2523230..2524156) /gene="yfeR" /locus_tag="SF2464" /db_xref="GeneID:1026769" CDS complement(2523230..2524156) /gene="yfeR" /locus_tag="SF2464" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_708264.1" /db_xref="GeneID:1026769" /translation="MNYSLKQLKVFVTVAQEKSFSRAGERIGLSQSAVSHSVKELENH TGVRLLDRTTREVVLTDAGQQLALRLERLLDELNSTLRDTGRMGQQLSGKVRVAASQT ISAHLIPQCIAESHRRYPDIQFVLHDRPQQWVMESIRQGDVDFGIVIDPGPVGDLQCE AILSEPFFLLCHRDSALAVEDYVPWQALQGAKLVLQDYASGSRPLIDAALARNGIQAN IVQEIGHPATLFPMVAAGIGISILPALALPLPEGSPLVVKRITPVVERQLMLVRRKNR SLSTAAEALWDVVRDQGNALMAGREGDPLYQI" misc_feature complement(2523965..2524144) /gene="yfeR" /locus_tag="SF2464" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature complement(2523290..2523877) /gene="yfeR" /locus_tag="SF2464" /note="TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440" /db_xref="CDD:176131" misc_feature complement(order(2523452..2523457,2523461..2523466, 2523482..2523499,2523773..2523793,2523797..2523799, 2523809..2523811,2523818..2523823,2523827..2523832)) /gene="yfeR" /locus_tag="SF2464" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176131" gene 2524246..2525244 /gene="yfeH" /locus_tag="SF2465" /db_xref="GeneID:1025487" CDS 2524246..2525244 /gene="yfeH" /locus_tag="SF2465" /note="Code: R; COG: COG0385" /codon_start=1 /transl_table=11 /product="cytochrome oxidase" /protein_id="NP_708265.1" /db_xref="GeneID:1025487" /translation="MKLFRILDPFTLTLITVVLLASFFPARGDFVPFFENLTTAAIAL LFFMHGAKLSREAIIAGGGHWRLHLWVMCSTFVLFPILGVLFAWWKPVNVDPMLYSGF LYLCILPATVQSAIAFTSMAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNVHGARGS LEQVGKIMLQLLLPFVLGHLSRPWIGDWVSRNKKWIAKTDQTSILLVVYTAFSEAVVN GIWHKVGWGSLLFIVVVSCVLLAIVIVVNVFMARRLSFNKADEITIVFCGSKKSLANG IPMANILFPTSVIGMMVLPLMIFHQIQLMVCAVLARRYKRQTEQLQAQQESSADKA" misc_feature 2524267..2525193 /gene="yfeH" /locus_tag="SF2465" /note="SBF-like CPA transporter family (DUF4137); Region: SBF_like; pfam13593" /db_xref="CDD:433336" gene complement(2525461..2527476) /gene="ligA" /locus_tag="SF2466" /db_xref="GeneID:1025587" CDS complement(2525461..2527476) /gene="ligA" /locus_tag="SF2466" /note="Code: L; COG: COG0272" /codon_start=1 /transl_table=11 /product="NAD-dependent DNA ligase LigA" /protein_id="NP_708266.1" /db_xref="GeneID:1025587" /translation="MESIEQQLTELRTTLCHHEYLYHVMDAPEIPDAEYDRLMRELRE LETKHPELITPDSPTQRVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL KNNEKVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH GENIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR PLTFFCYGVGVLEGGELPDTHLGRLLQFKKWGVPVSDRVTLCESAEEVLAFYHKVEED RPTLGFDIDGVVIKVNSLEQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT GAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL SERPEDTREVVFPTHCPVCGSDVERVEGEAVARCTGGLICGAQRKESLKHFVSRRAMD VDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKLAQNVVNALEKAKETTF ARFLYALGIREVGEATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAE ESNRNVISELLAEGVHWPAPIVINAEEIDSPFAGKTVVLTGSLSQMSRDDAKARLVEL GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLLGS" misc_feature complement(2525467..2527476) /gene="ligA" /locus_tag="SF2466" /note="NAD-dependent DNA ligase LigA; Validated; Region: ligA; PRK07956" /db_xref="CDD:236137" gene complement(2527547..2528530) /gene="zipA" /locus_tag="SF2467" /db_xref="GeneID:1025370" CDS complement(2527547..2528530) /gene="zipA" /locus_tag="SF2467" /note="Code: D; COG: COG3115" /codon_start=1 /transl_table=11 /product="cell division protein ZipA" /protein_id="NP_708267.2" /db_xref="GeneID:1025370" /translation="MQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRMK SKRDDDSYDEDVEDDEGVGEVRVHRVNHAPANAQEHEAARPSPQHQYLPPYASAQPRQ PVQQPPEAQVPPQHAPRPAQPVQQPAYQPQPEQPLQQPVSPQVAPAPQPVHSAPQPAQ QAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAVIIMNVAAHHGSELNGELLLNSIQQA GFIFGDMNIYHRHLSPDGSGPALFSLANMVKPGTFDPEMKDFTTPGVTIFMQVPSYGD ELQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDIIREVKDANA" misc_feature complement(2527574..2528473) /gene="zipA" /locus_tag="SF2467" /note="cell division protein ZipA; Region: septum_zipA; TIGR02205" /db_xref="CDD:274030" gene 2528763..2529524 /gene="cysZ" /locus_tag="SF2468" /db_xref="GeneID:1027218" CDS 2528763..2529524 /gene="cysZ" /locus_tag="SF2468" /note="Code: E; COG: COG2981" /codon_start=1 /transl_table=11 /product="sulfate transport protein CysZ" /protein_id="NP_708268.1" /db_xref="GeneID:1027218" /translation="MVSSFTSAPRSGFYYFAQGWKLVSQPGIRRFVILPLLVNILLMG GAFWWLFTQLDVWIPTFMSYVPDWLQWLSYLLWPLAVISVLLVFGYFFSTIANWIAAP FNGLLAEQLEARLTGATPPDTGIFGIMKDVPRIMKREWQKFVWYLPRAIVLLILYFIP GIGQTVAPVLWFLFSAWMLAIQYCDYPFDTHKVPFKEMRTALRTRKITNMQFGALTSL FTMIPLLNLFIMPVAVCGATAMWVDCYRDKHAMWR" misc_feature 2528769..2529521 /gene="cysZ" /locus_tag="SF2468" /note="putative sulfate transport protein CysZ; Validated; Region: PRK04949" /db_xref="CDD:179898" gene 2529709..2530680 /gene="cysK" /locus_tag="SF2469" /db_xref="GeneID:1025576" CDS 2529709..2530680 /gene="cysK" /locus_tag="SF2469" /note="Code: E; COG: COG0031" /codon_start=1 /transl_table=11 /product="cysteine synthase A" /protein_id="NP_708269.1" /db_xref="GeneID:1025576" /translation="MSKIFEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK LLKALGANLVLTEGAKGMKGAIQKAEEIVASNPEKYLLLQQFSNPANPEIHEKTTGPE IWEDTDGQVDVFIAGVGTGGTLTGVSRYIKGTKGKTDLISVAVEPTDSPVIAQVLAGE EIKPGPHKIQGIGAGFIPANLDLKLVDKVIGITNEEAISTARRLMEEEGILAGISSGA AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ" misc_feature 2529730..2530644 /gene="cysK" /locus_tag="SF2469" /note="cysteine synthase A; Region: cysK; TIGR01139" /db_xref="CDD:273465" misc_feature order(2529757..2529765,2529793..2529795,2529811..2529813, 2529817..2529819,2529943..2529945,2529952..2529954, 2530000..2530005,2530012..2530017,2530024..2530029, 2530195..2530200,2530495..2530503,2530507..2530515, 2530588..2530590,2530618..2530620,2530627..2530629) /gene="cysK" /locus_tag="SF2469" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:107204" misc_feature order(2529832..2529834,2529922..2529924,2530234..2530251, 2530393..2530395,2530525..2530527,2530606..2530611) /gene="cysK" /locus_tag="SF2469" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107204" misc_feature 2529832..2529834 /gene="cysK" /locus_tag="SF2469" /note="catalytic residue [active]" /db_xref="CDD:107204" gene 2531064..2531321 /gene="ptsH" /locus_tag="SF2470" /db_xref="GeneID:1026874" CDS 2531064..2531321 /gene="ptsH" /locus_tag="SF2470" /note="Code: G; COG: COG1925" /codon_start=1 /transl_table=11 /product="PTS system phosphohistidinoprotein-hexose phosphotransferase subunit Hpr" /protein_id="NP_708270.1" /db_xref="GeneID:1026874" /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE" misc_feature 2531064..2531318 /gene="ptsH" /locus_tag="SF2470" /note="phosphocarrier protein Hpr; Region: PRK10850" /db_xref="CDD:182777" misc_feature 2531076..2531087 /gene="ptsH" /locus_tag="SF2470" /note="dimerization domain swap beta strand [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature order(2531103..2531105,2531109..2531114,2531118..2531123, 2531133..2531135,2531142..2531144,2531196..2531207, 2531214..2531219) /gene="ptsH" /locus_tag="SF2470" /note="regulatory protein interface [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature 2531106..2531108 /gene="ptsH" /locus_tag="SF2470" /note="active site" /db_xref="CDD:238217" misc_feature 2531199..2531201 /gene="ptsH" /locus_tag="SF2470" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:238217" gene 2531366..2533093 /gene="ptsI" /locus_tag="SF2471" /db_xref="GeneID:1026770" CDS 2531366..2533093 /gene="ptsI" /locus_tag="SF2471" /note="Code: G; COG: COG1080" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate-protein phosphotransferase" /protein_id="NP_708271.1" /db_xref="GeneID:1026770" /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADQVDQEVERFL SGRAKASAQLETIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA AAHEVIEGQASALEELDDEYLKERAADVRDIGKRLLRNILGLKIIDLSAIQDEVILVA ADLTPSETAQLNLKKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTSQVKNDDYL ILDAVNNQVYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLPAITLDGHQVEVCANIG TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM DIGGDKELPYMNFPKEENPFLGWRAIRIAMDRKEILRDQLRAILRASAFGKLRIMFPM IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN KFIEEKTIC" misc_feature 2531366..2533090 /gene="ptsI" /locus_tag="SF2471" /note="phosphoenolpyruvate-protein phosphotransferase PtsI; Region: PRK11177" /db_xref="CDD:183017" gene 2533134..2533643 /gene="crr" /locus_tag="SF2472" /db_xref="GeneID:1027210" CDS 2533134..2533643 /gene="crr" /locus_tag="SF2472" /note="Code: G; COG: COG2190" /codon_start=1 /transl_table=11 /product="PTS system glucose-specific transporter subunit IIA" /protein_id="NP_708272.1" /db_xref="GeneID:1027210" /translation="MGLFDKLKSLVSDDKKDTGTIEIIAPLSGEIVNIEDVPDVVFAE KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE GFKRIAEEGQRVKVGDTVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVG ETPVIRIKK" misc_feature 2533134..2533640 /gene="crr" /locus_tag="SF2472" /note="PTS system glucose-specific transporter subunit; Provisional; Region: PRK09439" /db_xref="CDD:181859" misc_feature order(2533248..2533259,2533269..2533274,2533338..2533343, 2533347..2533352,2533368..2533376,2533392..2533400, 2533404..2533406,2533416..2533418,2533422..2533427, 2533461..2533463,2533557..2533559,2533566..2533568) /gene="crr" /locus_tag="SF2472" /note="HPr interaction site [active]" /db_xref="CDD:238128" misc_feature order(2533248..2533250,2533254..2533259,2533263..2533265, 2533269..2533274,2533341..2533343,2533347..2533349, 2533359..2533361,2533398..2533400,2533404..2533406, 2533416..2533418,2533422..2533427,2533431..2533433, 2533557..2533559) /gene="crr" /locus_tag="SF2472" /note="glycerol kinase (GK) interaction site [polypeptide binding]; other site" /db_xref="CDD:238128" misc_feature order(2533353..2533355,2533359..2533361,2533404..2533406, 2533410..2533412) /gene="crr" /locus_tag="SF2472" /note="active site" /db_xref="CDD:238128" misc_feature 2533404..2533406 /gene="crr" /locus_tag="SF2472" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238128" gene complement(2533685..2534536) /gene="pdxK" /locus_tag="SF2473" /db_xref="GeneID:1025882" CDS complement(2533685..2534536) /gene="pdxK" /locus_tag="SF2473" /note="Code: H; COG: COG2240" /codon_start=1 /transl_table=11 /product="pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase" /protein_id="NP_708273.1" /db_xref="GeneID:1025882" /translation="MSSLLLFNDKSRALQADIVAVQSQVVYGSVGNSIAVPAIKQNGL NVFAVPTVLLSNTPHYDTFYGGAIPDEWFSGYLRAFQERDALRQLRAVTTGYMGTASQ IKILAEWLTALRKDHPDLLIMVDPVIGDIDSGIYVKPDLPEAYRQYLLPLAQGITPNI FELEILTGKNCRDLDSAIAAAKSLLSDTLKWVVITSASGNEENQEMQVVVVSADSVNV ISHSRVKTDLKGTGDLFCAQLISGLLKGKALNDAVHRAGLRVLEVMRYTQQHESDELI LPPLAEA" misc_feature complement(2533694..2534536) /gene="pdxK" /locus_tag="SF2473" /note="pyridoxine/pyridoxal/pyridoxamine kinase; Region: pdxK; PRK08176" /db_xref="CDD:181269" misc_feature complement(order(2534288..2534290,2534309..2534314, 2534333..2534335,2534339..2534344,2534369..2534371, 2534378..2534380,2534387..2534404,2534417..2534419, 2534426..2534428,2534438..2534440,2534450..2534452, 2534456..2534461,2534465..2534467,2534486..2534488)) /gene="pdxK" /locus_tag="SF2473" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238578" misc_feature complement(order(2533838..2533840,2533847..2533852, 2534243..2534245,2534249..2534251,2534348..2534350, 2534363..2534368,2534375..2534377,2534444..2534449, 2534468..2534470)) /gene="pdxK" /locus_tag="SF2473" /note="pyridoxal binding site [chemical binding]; other site" /db_xref="CDD:238578" misc_feature complement(order(2533745..2533747,2533757..2533759, 2533832..2533834,2533838..2533846,2533865..2533870, 2533874..2533876,2533919..2533921,2533949..2533954, 2534051..2534053,2534060..2534062,2534066..2534068, 2534147..2534149,2534162..2534164)) /gene="pdxK" /locus_tag="SF2473" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238578" gene 2534641..2535015 /gene="yfeK" /locus_tag="SF2474" /db_xref="GeneID:1027204" CDS 2534641..2535015 /gene="yfeK" /locus_tag="SF2474" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708274.1" /db_xref="GeneID:1027204" /translation="MKKIICLAITLLMTLPAYAKLTVHEEARINAMLEGLAQKKDLIF VRNGDEHTCDEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKIPGKSDE NAQPFLHALIAQTDKTVPAEGN" misc_feature 2534644..2535006 /gene="yfeK" /locus_tag="SF2474" /note="hypothetical protein; Provisional; Region: PRK10318" /db_xref="CDD:236672" gene 2535048..2535771 /locus_tag="SF2475" /pseudo /db_xref="GeneID:1025588" misc_feature 2535048..2535771 /locus_tag="SF2475" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788760 (245 aa). BLAST with identity of 96% in 241 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2535975..2536886) /gene="cysM" /locus_tag="SF2476" /db_xref="GeneID:1025594" CDS complement(2535975..2536886) /gene="cysM" /locus_tag="SF2476" /note="Code: E; COG: COG0031" /codon_start=1 /transl_table=11 /product="cysteine synthase B" /protein_id="NP_708275.2" /db_xref="GeneID:1025594" /translation="MSTLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRA ALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA MRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQ QTGGRITHFVSSMGTTGTITGVSCFMREQSKPVTIVGLQPEEGSSIPGIRRWPAEYLP GIFNAALVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVAKANPGAVVV AIICDRGDRYLSTGVFGEEHFSQGAGI" misc_feature complement(2536005..2536886) /gene="cysM" /locus_tag="SF2476" /note="cysteine synthase CysM; Region: cysM; PRK11761" /db_xref="CDD:236972" misc_feature complement(order(2536026..2536028,2536035..2536037, 2536065..2536067,2536134..2536142,2536146..2536154, 2536404..2536409,2536569..2536574,2536581..2536586, 2536593..2536598,2536644..2536646,2536653..2536655, 2536779..2536781,2536785..2536787,2536803..2536805, 2536842..2536850)) /gene="cysM" /locus_tag="SF2476" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:107204" misc_feature complement(order(2536044..2536049,2536122..2536124, 2536263..2536265,2536353..2536370,2536674..2536676, 2536764..2536766)) /gene="cysM" /locus_tag="SF2476" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107204" misc_feature complement(2536764..2536766) /gene="cysM" /locus_tag="SF2476" /note="catalytic residue [active]" /db_xref="CDD:107204" gene complement(2537020..2538117) /locus_tag="SF2476a" /db_xref="GeneID:16608346" CDS complement(2537020..2538117) /locus_tag="SF2476a" /codon_start=1 /transl_table=11 /product="sulfate ABC transporter ATP-binding protein" /protein_id="YP_008439268.1" /db_xref="GeneID:16608346" /translation="MSIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL LRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNITFGLTVL PRRERPNAAAIKAKVTKLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLL DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQA DAPNQVWREPATRFVLEFMGEVNRLQGTIRGGQFHVGAHRWPLGYTPAYQGPVDLFLR PWEVDISRRTSLDSPLPVQVLEASPKGHYTQLVVQPLGWYNEPLTVVMHGDDAPQHGE RLFVGLQHARLYNGDERIETRDEELALAQSA" misc_feature complement(2537062..2538117) /locus_tag="SF2476a" /note="sulfate/thiosulfate ABC transporter ATP-binding protein CysA; Region: PRK10851" /db_xref="CDD:182778" gene complement(2538107..2538556) /gene="cysW" /locus_tag="SF2477" /pseudo /db_xref="GeneID:1025591" misc_feature complement(2538107..2538556) /gene="cysW" /locus_tag="SF2477" /note="Similar to Escherichia coli K12 sulfate transport system permease W protein gi: 1788762 (150 aa). BLAST with identity of 95% in 149 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2538982..2539815) /gene="cysU" /locus_tag="SF2478" /db_xref="GeneID:1025682" CDS complement(2538982..2539815) /gene="cysU" /locus_tag="SF2478" /note="Code: P; COG: COG0555" /codon_start=1 /transl_table=11 /product="sulfate/thiosulfate transporter subunit" /protein_id="NP_708276.1" /db_xref="GeneID:1025682" /translation="MFAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSEMSW AQYWEVITNPQVVAAYKVTLLSAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL PFALPTAVAGLTLASLFSVNGFYGEWLAKFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ PVLEELGPEYEEAAETLGATRWQSFCKVVLPELSPALVAGVALSFTRSLGEFGAVIFI AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG H" misc_feature complement(2538985..2539815) /gene="cysU" /locus_tag="SF2478" /note="sulfate/thiosulfate ABC transporter permease CysT; Region: PRK10971" /db_xref="CDD:182873" misc_feature complement(order(2539060..2539062,2539069..2539074, 2539078..2539083,2539090..2539095,2539123..2539128, 2539165..2539170,2539177..2539188,2539207..2539209, 2539216..2539221,2539261..2539263,2539312..2539314, 2539321..2539326,2539336..2539338,2539342..2539347, 2539354..2539356,2539360..2539362,2539369..2539374, 2539468..2539470,2539474..2539479,2539486..2539515, 2539519..2539530,2539558..2539560,2539573..2539578, 2539585..2539590)) /gene="cysU" /locus_tag="SF2478" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2539171..2539188,2539468..2539512)) /gene="cysU" /locus_tag="SF2478" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(2539093..2539095,2539123..2539125, 2539132..2539134,2539168..2539170,2539387..2539389, 2539468..2539470)) /gene="cysU" /locus_tag="SF2478" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(2539240..2539242,2539252..2539257, 2539273..2539311)) /gene="cysU" /locus_tag="SF2478" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(2539815..2540831) /gene="cysP" /locus_tag="SF2479" /db_xref="GeneID:1025579" CDS complement(2539815..2540831) /gene="cysP" /locus_tag="SF2479" /note="Code: P; COG: COG1613" /codon_start=1 /transl_table=11 /product="thiosulfate transporter subunit" /protein_id="NP_708277.1" /db_xref="GeneID:1025579" /translation="MAVNLLKKNSLALVASLLLAGHVQATELLNSSYDVSRELFAALN PPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKL IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWNDLVRSDVKLIFPNPKTSGNARY TYLAAWGAADKADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQA QTIITDYYYRVNNPEVMDKLKDKFPQTELFRVEDKFGSWPEVMKTHFTSGGELDKLLA AGRK" misc_feature complement(2539818..2540831) /gene="cysP" /locus_tag="SF2479" /note="thiosulfate ABC transporter substrate-binding protein CysP; Region: PRK10852" /db_xref="CDD:236775" misc_feature complement(order(2540181..2540183,2540238..2540243, 2540361..2540369,2540568..2540570,2540625..2540633, 2540727..2540735)) /gene="cysP" /locus_tag="SF2479" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270226" gene complement(2541135..2541926) /gene="ucpA" /locus_tag="SF2480" /db_xref="GeneID:1026719" CDS complement(2541135..2541926) /gene="ucpA" /locus_tag="SF2480" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="short chain dehydrogenase" /protein_id="NP_708278.2" /db_xref="GeneID:1026719" /translation="MGKLTGKTALITGALQGIGEGIARTFARHGANLILLDISPEIEK LADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMS DEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKA AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPL CRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPETVSVGI" misc_feature complement(2541138..2541926) /gene="ucpA" /locus_tag="SF2480" /note="SDR family oxidoreductase UcpA; Region: PRK08226" /db_xref="CDD:181305" gene complement(2542113..2543114) /gene="yfeT" /locus_tag="SF2482" /db_xref="GeneID:1027205" CDS complement(2542113..2543114) /gene="yfeT" /locus_tag="SF2482" /note="Code: K; COG: COG1737" /codon_start=1 /transl_table=11 /product="transcriptional regulator MurR" /protein_id="NP_708279.1" /db_xref="GeneID:1027205" /translation="MFEPSVIIFSSCIGGDLTIYDQIIADVWNHISRIDRLKGIIEST LAECEERHKNLSGIFAASPGEWKMLYLTKIRNAESEFTGNEQKIADFLRARVSELKSV SSRQMAKQLGISQSSIVKFAQKLGAQGFTELRMALIGEYSASREKTNATALHVHSSIT SDDSLEVIARKLNREKEMALEQTCALFDYARLQKIIEVISKAPFIQITGLGGSALVGR DLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSKKEIVLCAEAARKQG ATVIAITSLADSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLLFVGLVQHQ" misc_feature complement(2542116..2542913) /gene="yfeT" /locus_tag="SF2482" /note="HTH-type transcriptional regulator MurR; Region: PRK15482" /db_xref="CDD:185379" gene 2543077..2543973 /gene="murQ" /locus_tag="SF2481" /db_xref="GeneID:1024403" CDS 2543077..2543973 /gene="murQ" /locus_tag="SF2481" /note="Code: R; COG: COG2103" /codon_start=1 /transl_table=11 /product="N-acetylmuramic acid-6-phosphate etherase" /protein_id="NP_708280.1" /db_xref="GeneID:1024403" /translation="MQLEKMITEGSNTASAEIDRVSTLEMCRIINDEDKTVPPAVDRV LPDIAAAIDVIHAQVSGGGRLIYLGAGTSGRLGILDASECPPTYGVKPGLVVGLIAGG EYAIQHAVEGAEDSREGGVNDLKNINLTAQDVVVGIAASGRTPYVIAGLEYARQLGCR TVGISCNPGSAVSTTAEFAITPIVGAEVVTGSSRMKAGTAQKLVLNMLSTGLMIKSGK VFGNLMVDVVATNEKLHVRQVNIVKNATGCNAEQAEAALIACERNCKTAIVMVLKNLD AAEAKKRLDQHGGFIRQVLDKE" misc_feature 2543092..2543964 /gene="murQ" /locus_tag="SF2481" /note="N-acetylmuramic acid 6-phosphate etherase; Region: TIGR00274" /db_xref="CDD:272991" gene 2543977..2545401 /gene="murP" /locus_tag="SF2483" /db_xref="GeneID:1025586" CDS 2543977..2545401 /gene="murP" /locus_tag="SF2483" /note="Code: G; COG: COG1263" /codon_start=1 /transl_table=11 /product="PTS system N-acetylmuramic acid transporter subunits IIBC" /protein_id="NP_708281.1" /db_xref="GeneID:1025586" /translation="MAKEISSELLNTILTRVGGPGNIASCGNCMTRLRLGVHDSSLVD PNIKTLEGVKGVILTSDQVQVVFGPGKAHRAAKAMSELLGDAPVQDAAEIAAQNKRQL KAKQTSGVQQFLAKFATIFTPLIPGFIAAGLLLGIATLIATVMHVPADAQGTLPDALN FMKVFSKGLFTFLVILVGYNAAQAFGGTGVNGAIIAALFLLGYNPAATTGYYAGFHDF FGLPIDPRGNIIGVLIAAWACARIEGMVRRFMPDDLDMLLTSLITLLITATLAYLIIM PLGGWLFEGMSWLFMHLNSNPFGCAVLAGLFLIAVVFGVHQGFIPVYLALMDSQGFNS LFPILSMAGAGQVGAALALYWRAQPHSALRSQVRGAIIPGLLGVGEPLIYGVTLPRMK PFVTACLGGAAGGLFIGLIAWWGLPMGLNSAFGPSGLVALPLMTSAQGILPAMAVYAG GILVAWVCGFIFTTLFGCRNVNLD" misc_feature 2543980..2545398 /gene="murP" /locus_tag="SF2483" /note="PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed; Region: murP; PRK09586" /db_xref="CDD:181971" gene complement(2545581..2546480) /locus_tag="SF2484" /db_xref="GeneID:1025583" CDS complement(2545581..2546480) /locus_tag="SF2484" /note="Code: P; COG: COG2837" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708282.2" /db_xref="GeneID:1025583" /translation="MSQVQSGILPEHCRAAIWIEANVKGEVDALRAASKTFADKLATF EAKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFPGYGKGLAPTTQFDVLIHILSLR HDVNFSVAQAAMEAFGDCIEVKEEIHGFRWVEERDLSGFVDGTENPAGEETRREVAVI KDGVDSGGSYVFVQRWEHNLKQLNRMSVHDQEMMIGRTKEANEEIDGDERPETSHLTR VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM LRFTKPVTGGYYFAPSLDKLMAL" misc_feature complement(2545593..2546468) /locus_tag="SF2484" /note="Dyp-type peroxidase family; Region: Dyp_perox; pfam04261" /db_xref="CDD:461241" gene complement(2546576..2547151) /locus_tag="SF2485" /db_xref="GeneID:1026773" CDS complement(2546576..2547151) /locus_tag="SF2485" /codon_start=1 /transl_table=11 /product="RpoE-regulated lipoprotein" /protein_id="NP_708283.1" /db_xref="GeneID:1026773" /translation="MKSLRLMLCAMPLMLTGCSTMSSVNWSAANPWNWFGSSTKVSEQ GVGELTASTPLQEQAIADALDGDYRLRSGMKTTNGNVVRFFEVMKGDNVAMVINGDQG TISRIDVLDSDIPADTGVKIGTPFSDLYSKAFGNCQKADGDDNRAVECKAEGSQHISY QFSGEWRGPEGLMPSDDTLKNWKVSKIIWRR" misc_feature complement(2546579..2547151) /locus_tag="SF2485" /note="RpoE-regulated lipoprotein; Provisional; Region: PRK10718" /db_xref="CDD:236742" gene complement(2547212..2547661) /locus_tag="SF2486" /db_xref="GeneID:1025590" CDS complement(2547212..2547661) /locus_tag="SF2486" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708284.2" /db_xref="GeneID:1025590" /translation="MKSTEFHPVHYDAHGRLRLPLLFWLVLLLQARTWVLFVIAGASR EQGTALLNLFYPDHDNFWLGLIPGIPAVLAFLLSGRRASFPRTWHVLYFLLLLAQVVL LCWQPWLWLNGESVSGIGLALVVADIVALIWLLTNRRLRACFNEEKE" misc_feature complement(2547224..2547646) /locus_tag="SF2486" /note="Protein of unknown function (DUF2919); Region: DUF2919; pfam11143" /db_xref="CDD:431678" gene complement(2547648..2548073) /locus_tag="SF2487" /db_xref="GeneID:1025585" CDS complement(2547648..2548073) /locus_tag="SF2487" /note="Code: R; COG: COG0456" /codon_start=1 /transl_table=11 /product="acetyltransferase YpeA" /protein_id="NP_708285.2" /db_xref="GeneID:1025585" /translation="MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSL FLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPK IQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDEEY" misc_feature complement(2547660..2548073) /locus_tag="SF2487" /note="putative acetyltransferase; Provisional; Region: PRK03624" /db_xref="CDD:235142" gene 2548287..2549156 /gene="amiA" /locus_tag="SF2488" /db_xref="GeneID:1027212" CDS 2548287..2549156 /gene="amiA" /locus_tag="SF2488" /note="Code: M; COG: COG0860" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="NP_708286.1" /db_xref="GeneID:1027212" /translation="MSTFKPLKTLTSRRQVLKAGLAALTLSGMSQAIAKDEPLKTSNG HSKPKAKKSGGKRVVVLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGIDA RLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA KYLSERENRADEVAGKKATDKDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPVHKL HSRNTEQAAFVVLKSPSVPSVLVETSFITNPEEERLLGTAAFRQKIATAIAEGVISYF HWFDNQKAHSKKR" misc_feature 2548287..2549147 /gene="amiA" /locus_tag="SF2488" /note="N-acetylmuramoyl-L-alanine amidase AmiA; Region: PRK10319" /db_xref="CDD:182376" gene 2549160..2550059 /gene="hemF" /locus_tag="SF2489" /db_xref="GeneID:1025580" CDS 2549160..2550059 /gene="hemF" /locus_tag="SF2489" /note="Code: H; COG: COG0408" /codon_start=1 /transl_table=11 /product="coproporphyrinogen III oxidase" /protein_id="NP_708287.1" /db_xref="GeneID:1025580" /translation="MKPDAHQVKQFLLNLQDTICQQLTAVDGAEFVEDSWQREAGGGG RSRVLRNGGVFEQAGVNFSHVHGEAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYV PTSHANVRFFIAEKPGAEPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCQPFGEDVY PRYKKWCDDYFYLKHRNEQRGIGGLFFDDLNTPDFDHCFAFMQAVGKGYTDAYLPIVE RRKAMAYGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY DYQPKDGSPEAALSEFIKVRDWG" misc_feature 2549160..2550053 /gene="hemF" /locus_tag="SF2489" /note="oxygen-dependent coproporphyrinogen oxidase; Region: PRK05330" /db_xref="CDD:235413" gene complement(2550065..2551117) /gene="yfeG" /locus_tag="SF2490" /pseudo /db_xref="GeneID:1025589" misc_feature complement(2550065..2551117) /gene="yfeG" /locus_tag="SF2490" /note="Similar to Escherichia coli K12 ARAC-type regulatory protein gi: 1788778 (351 aa). BLAST with identity of 96% in 350 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(2551163..2551663) /locus_tag="SF2491" /db_xref="GeneID:1025612" CDS complement(2551163..2551663) /locus_tag="SF2491" /codon_start=1 /transl_table=11 /product="carboxysome structural protein EutK" /protein_id="NP_708288.2" /db_xref="GeneID:1025612" /translation="MINALGLLEVDGMVAAIDAADAMLKAANVRLLSHEVLDPGRLTL VVEGDLAACRAALDAGCAAAMRTGRVISRKEIGRPDDDTQWLVTGFNRQPKQPVKEPD APVIVAESADELLALLTSVCQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKRSSR YRLKPH" misc_feature complement(2551166..2551663) /locus_tag="SF2491" /note="ethanolamine utilization microcompartment protein EutK; Region: PRK15466" /db_xref="CDD:185363" misc_feature complement(order(2551418..2551420,2551427..2551432, 2551436..2551438,2551442..2551450,2551541..2551549, 2551556..2551558,2551571..2551573,2551589..2551594, 2551601..2551603,2551628..2551630,2551637..2551639)) /locus_tag="SF2491" /note="Hexamer interface [polypeptide binding]; other site" /db_xref="CDD:132885" misc_feature complement(2551556..2551558) /locus_tag="SF2491" /note="Hexagonal pore residue [active]" /db_xref="CDD:132885" gene complement(2551676..2552335) /locus_tag="SF2492" /db_xref="GeneID:1026991" CDS complement(2551676..2552335) /locus_tag="SF2492" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutL" /protein_id="NP_708289.1" /db_xref="GeneID:1026991" /translation="MPALDLIRPSVTAMRVIASVNAEFARELKLPPHIRSLGLISADS DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA MVAHIENGAAFQWANDAENTAFLAHVVSRTGSYLSSTAGITLGDPMAYLVAPPLEATY GIDAALKSADVQLVTYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLEIARNPIQR A" misc_feature complement(2551682..2552332) /locus_tag="SF2492" /note="ethanolamine utilization microcompartment protein EutL; Region: PRK15405" /db_xref="CDD:185303" gene 2553517..2554308 /locus_tag="SF2493" /db_xref="GeneID:1025606" CDS 2553517..2554308 /locus_tag="SF2493" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708290.1" /db_xref="GeneID:1025606" /translation="MRALKIDAISLNFSHSPEWWRSGLIATLPRLDIERIIDTYIKRK RDKFIVKIRGLHIMRISEQQRQILDYLAKNESITARQAADLVYGGNVTRVQVDAARRS LMTMVSNGLIRKQGRAFVAERHINHAYSQDVEELRRQILWVFSKQGQEYFLSEHPNFA AKELTVSGLSCALDYLVGEGCVTYKQLWHALNTLVEDGLLIATRENIEYWIMPRSGRR NHARYISGNRYRTPDFNPTQEDRDRAEMMCREQEKRIMDKLFSMQ" gene 2555028..2555423 /locus_tag="SF2494" /db_xref="GeneID:1027207" CDS 2555028..2555423 /locus_tag="SF2494" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708291.1" /db_xref="GeneID:1027207" /translation="MTNIERLERCADIMRRRWIYDPEAGLLFSRETKDVIKGSMTNKG HLVVTVHEGKFKVTLTYQKACYVYTYGAYDETLYEVHHVNLNKQDNRIKNIRLMPKEK HRRIHKNVRKLIRLGHTQWLQPQLIEQSL" misc_feature <2555259..2555342 /locus_tag="SF2494" /note="HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and...; Region: HNHc; cl00083" /db_xref="CDD:469607" gene 2555441..2555704 /locus_tag="SF2495" /db_xref="GeneID:1025601" CDS 2555441..2555704 /locus_tag="SF2495" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708292.1" /db_xref="GeneID:1025601" /translation="MHSLDSYFQRTTAPKSAAQERREEFHEKVMRSADYIADKFVETV RPLVDEVADKLQSEMPEDMEGTAKRRLICELSRRFGVSISAFK" gene 2555727..2556269 /locus_tag="SF2496" /db_xref="GeneID:1025605" CDS 2555727..2556269 /locus_tag="SF2496" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708293.1" /db_xref="GeneID:1025605" /translation="MDAFEVLANKGAELVAQRDKTANEGERALLNKQIKAIRMAQFKL ISNEVIETIKPQIPQIVADAIKAAGLEKRIAGLKTNAEKMEMYKQSGAPNPDEYFSPD VEFMAQVEERLGSCLTEEQRRYFDGVDSSAGIDLNSYFGREIEHFDAAPSMPEPEPEM ATDPEAEQRKRVFNAIGIRY" gene 2556366..2556695 /locus_tag="SF2497" /db_xref="GeneID:1025593" CDS 2556366..2556695 /locus_tag="SF2497" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708294.2" /db_xref="GeneID:1025593" /translation="MFGNYISTSPEKIIMLALRIMQGIAKTLAEHVLDLKHSPLSKQA MKRQTLRLWAEYSLGTINKIIDMKSGPSNQSAEEMEFIRRLILIRRDIHSQLHSVGID INDGTGD" gene 2556734..2556940 /locus_tag="SF2497a" /db_xref="GeneID:16608347" CDS 2556734..2556940 /locus_tag="SF2497a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439269.1" /db_xref="GeneID:16608347" /translation="MKQDIADRLEILEGQRAEAKQLRKQARRAHRNNEAELLTKYISF TNYCIYECYKEDAEDWLDSLPEQY" gene 2557525..2557737 /locus_tag="SF2498" /db_xref="GeneID:1025429" CDS 2557525..2557737 /locus_tag="SF2498" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708295.2" /db_xref="GeneID:1025429" /translation="MAEPEGRCVRMLSDSWSFPDSRHTLGCSTIGSSEAAMLGRLALK WQWCKKREVQGKSTEPDLRSCANMLA" misc_feature 2557537..>2557713 /locus_tag="SF2498" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl18945" /db_xref="CDD:450240" gene 2557989..2559449 /locus_tag="SF2499" /db_xref="GeneID:1025060" CDS 2557989..2559449 /locus_tag="SF2499" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="amino acid antiporter" /protein_id="NP_708296.2" /db_xref="GeneID:1025060" /translation="MSNANIAPKSKKMTVGTLAIMNITAVVSLRFIPSEAEYGLGAIF YYTFAAIMFLVPVAFVAAELATTYPQKGGAFRWIGEAFGARWGFVGMLMTWLQVIPYF PTVLTFGAVSVAFIDVDMGVAESIASNKWYILFFVLFVYWGAICVALRGVGIFSQVSK WCGIIGTIIPAIILVILGFSYLWFSGKPAVIPLGWGDLFPNIANFQNIVLAASIFLAY AGMEMNAVHVNDLDNPTKKYPIAITIASIGTIAIFLLSTLGVAFIIPTDKISLTQSLL VAYDMLFEWAGVPWLGSVMAFMLAIGVLGGVVTWIAGPNTGVLAIAKAGYLPKFFQKT NRHGMGHHLMFVQGIIVSVLSVTFVIMPSVQAAFQILSQLTVMLYLVMYMLMFASAIY LRHSQPDTKRPYRAPALFFWATLGFLGSFLAFVLSFIPPEQIPTGSPTSYVLYLLVLV ALFLLIPILIYAFRKSDWKDPNSDFEPFSWEKRTSN" misc_feature 2558019..2559431 /locus_tag="SF2499" /note="putative glutamate/gamma-aminobutyrate antiporter; Region: put_Glu_GABA_T; TIGR03813" /db_xref="CDD:163525" gene 2559471..2560292 /locus_tag="SF2500" /db_xref="GeneID:1025604" CDS 2559471..2560292 /locus_tag="SF2500" /note="Code: M; COG: COG0796" /codon_start=1 /transl_table=11 /product="glutamate racemase" /protein_id="NP_708297.1" /db_xref="GeneID:1025604" /translation="MRLNMFSAESPIGVIDSGVGGLTSVKEIINLLPGEDIIYCGDNM NAPYGNRSADDIISLTKKMLTFLQSRNVKLVAVACNTISSTLESEEYSGYAKSFPFPI LSIIEPAVEDVIRQQYKNVGIIATEFTIKTGCHKELIKKLNSTINVFGEPSKNLAMLI EEGNLNAPAILNDIKKHVNHLISLHPVNEIILGCTHYPIVQNFFEAVAPDIKFINPAH DQAISIKNHLGQLNLLNSSNIGTLQINTSGSMEIYKTVLGELSITKPHTFSIRQF" misc_feature 2559501..2560250 /locus_tag="SF2500" /note="Glutamate racemase [Cell wall/membrane/envelope biogenesis]; Region: MurI; COG0796" /db_xref="CDD:440559" mobile_element complement(2560406..2561162) /note="partial" /mobile_element_type="insertion sequence:iso-IS1" gene complement(2560411..2560806) /locus_tag="SF2501" /db_xref="GeneID:1024022" CDS complement(2560411..2560806) /locus_tag="SF2501" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708298.1" /db_xref="GeneID:1024022" /translation="MAFICELDEQWSYVGSKARQHWLGYAYNTKTGGVLAYTFGPRTD QTCRELLALLTPFNIGMLTSDDWGSYGREVPKNKHLTGKIFTQRIERNNLTLRTRIKR LGRKTICFSRSVEIHEKVIGAFIEKHMFY" misc_feature complement(2560414..2560803) /locus_tag="SF2501" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2560833..2561105) /locus_tag="SF2501a" /db_xref="GeneID:16608348" CDS complement(2560833..2561105) /locus_tag="SF2501a" /codon_start=1 /transl_table=11 /product="Insertion element iso-IS1N protein insA" /protein_id="YP_008439270.1" /db_xref="GeneID:16608348" /translation="MTSVNIHCPRCQSAQVYRHGQNPKGRDRLRCRDCHRVFQFTYTY QARKPGMKELITEMAFNGAGVRDTARTLKIGSNTVIRTLKNSRQSE" misc_feature complement(<2560845..2561084) /locus_tag="SF2501a" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(2561624..2562997) /gene="eutA" /locus_tag="SF2502" /db_xref="GeneID:1025288" CDS complement(2561624..2562997) /gene="eutA" /locus_tag="SF2502" /codon_start=1 /transl_table=11 /product="reactivating factor for ethanolamine ammonia lyase" /protein_id="NP_708299.1" /db_xref="GeneID:1025288" /translation="MKKLITANDIREAHARGEQAMSVVLRASIITPEAREVADLLGFT ITECDESIPVTASVPASVPADKTESQRIRETIIAQLPEGQFTESLVAQLMEKVMKEKQ SLGDFVVASAGPHLESVIAGHGAGAQTLSEQRLCRVLNIDIGGGTANYALFDAGKISG TACLNVGGRLLETDSQGRVVYAHKPGQMIVDECFGAGTDARSLTGAQLVQVTRRMAAL IVEVIDGTLSPLAQALMQTGLLPAGVTPEIITLSGGVGECYRHQPANPFCFADIGPLL ATALHDHPRLREMNVQFPAQTVRSTVIGAGAHTLSLSGSTIWLEGVQLPLRNLPVAIP IDETDLVSAWQQALLQLDLDPKTDVYVLALPASLPVRYAAVLTVINALVDFVARFPNP HPLLVVAGQDFGKALGMLLRPQLQQLPLAVIDEVIVRAGDYIDIGTPLFGGSVVPVTV KSLAFPS" misc_feature complement(2561627..2562985) /gene="eutA" /locus_tag="SF2502" /note="ethanolamine ammonia-lyase reactivating factor EutA; Region: eutA; PRK10719" /db_xref="CDD:236743" gene complement(2562972..2563451) /locus_tag="SF2503" /db_xref="GeneID:1025602" CDS complement(2562972..2563451) /locus_tag="SF2503" /codon_start=1 /transl_table=11 /product="ethanolamine utilization protein EutP" /protein_id="NP_708300.1" /db_xref="GeneID:1025602" /translation="MKRIAFVGSVGAGKTTLFNALQGNYTLARKTLAVEFNDKGDIDT PGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRLPAGLLDIGVSKRQIAVISKTD MPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQEEAGEKTHHSE" misc_feature complement(2562978..2563451) /locus_tag="SF2503" /note="ethanolamine utilization acetate kinase EutP; Region: PRK15467" /db_xref="CDD:185364" misc_feature complement(2563407..2563430) /locus_tag="SF2503" /note="G1 box; other site" /db_xref="CDD:206648" misc_feature complement(order(2563062..2563070,2563146..2563148, 2563152..2563157,2563314..2563316,2563404..2563424)) /locus_tag="SF2503" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206648" misc_feature complement(2563374..2563376) /locus_tag="SF2503" /note="G2 box; other site" /db_xref="CDD:206648" misc_feature complement(2563356..2563364) /locus_tag="SF2503" /note="Switch I region; other site" /db_xref="CDD:206648" misc_feature complement(2563314..2563325) /locus_tag="SF2503" /note="G3 box; other site" /db_xref="CDD:206648" misc_feature complement(order(2563251..2563256,2563314..2563319)) /locus_tag="SF2503" /note="Switch II region; other site" /db_xref="CDD:206648" misc_feature complement(2563146..2563157) /locus_tag="SF2503" /note="G4 box; other site" /db_xref="CDD:206648" misc_feature complement(2563062..2563070) /locus_tag="SF2503" /note="G5 box; other site" /db_xref="CDD:206648" gene complement(2563464..2563871) /locus_tag="SF2504" /db_xref="GeneID:1025311" CDS complement(2563464..2563871) /locus_tag="SF2504" /codon_start=1 /transl_table=11 /product="carboxysome structural protein EutS" /protein_id="NP_708301.1" /db_xref="GeneID:1025311" /translation="MPNFVIYSDEKLSRYTKVFHRRRLMDKERIIQEFVPGKQVTLAH LIAHPGEELAKKIGVPDAGAIGIMTLTPGETAMIAGDLALKAADVHIGFLDRFSGALV IYGSVGAVEEALSQTVSGLGRLLNYTLCEMTKS" misc_feature complement(2563467..2563799) /locus_tag="SF2504" /note="ethanolamine utilization microcompartment protein EutS; Region: PRK15468" /db_xref="CDD:185365" misc_feature complement(order(2563578..2563580,2563584..2563586, 2563599..2563601,2563617..2563622,2563629..2563631, 2563656..2563658,2563665..2563667)) /locus_tag="SF2504" /note="putative hexamer interface [polypeptide binding]; other site" /db_xref="CDD:132886" misc_feature complement(2563584..2563586) /locus_tag="SF2504" /note="putative hexagonal pore [active]" /db_xref="CDD:132886" gene complement(2564092..2566371) /locus_tag="SF2505" /db_xref="GeneID:1025596" CDS complement(2564092..2566371) /locus_tag="SF2505" /codon_start=1 /transl_table=11 /product="bifunctional malic enzyme oxidoreductase/phosphotransacetylase" /protein_id="NP_708302.1" /db_xref="GeneID:1025596" /translation="MDDQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA APCLEIEKDPLKAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA GIDVFDIEVDELDPDKFIEVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGLQKHNIVV CDSKGVIYQGREPNMAETKAAYAVVDDGKRTLDDVIEGADIFLGCSGPKVLTQEMVKK MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGVQDLSFGPEYIIPKPFDPRLIVKI APAVAKAAMESGVATRPIADFDVYIDKLTEFVYKTNLFMKPIFSQARKAPKRVVLPEG EEARVLHATQELVTLGLAKPILIGRPNVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK EYWTEYFQIMKRRGVTQEQAQRALISNPTVIGAIMVQRGEADAMICGTVGDYHEHFSV VKNVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNDEPDAEELAEITLMAAETVRRFG IEPRVALLSHSNFGSSDCPSSSKMRQALELVRDRAPDLMIDGEMHGDAALVEAIRNDR MPDSPLKGSANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVAKPVHVLTPIASV RRIVNMVALAVVEAQTQPL" misc_feature complement(2564104..2566365) /locus_tag="SF2505" /note="bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed; Region: PRK07232" /db_xref="CDD:235976" gene 2566660..2567610 /gene="talA" /locus_tag="SF2506" /db_xref="GeneID:1026828" CDS 2566660..2567610 /gene="talA" /locus_tag="SF2506" /note="Code: G; COG: COG0176" /codon_start=1 /transl_table=11 /product="transaldolase A" /protein_id="NP_708303.1" /db_xref="GeneID:1026828" /translation="MNELDGIKQFTTVVADSCDIESIRHYHPQDATANPSLLLKAAGL SQYEHLIDDAIAWGKKNGKTQEQQVVAACDKLAVNFGAEILKIVPGCVSTEVDARLSF DKEKSIEKARHLVDLYQQQGVEKSRILIKLASTWEGIRAAEELEKEGINCNLTLLFSF TQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHHYE TIVMGASFRRTEQILALTGCDRLTIAPNLLKELQEKVSPVVRKLIPPSQTFPRPAPMS EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL" misc_feature 2566660..2567607 /gene="talA" /locus_tag="SF2506" /note="transaldolase A; Provisional; Region: PRK12346" /db_xref="CDD:183458" misc_feature order(2566705..2566707,2566753..2566755,2566759..2566764, 2566936..2566938,2566942..2566944,2567050..2567052, 2567116..2567118,2567122..2567124,2567182..2567184, 2567197..2567199) /gene="talA" /locus_tag="SF2506" /note="active site" /db_xref="CDD:188644" misc_feature order(2566966..2566968,2567491..2567493,2567500..2567502, 2567512..2567517,2567533..2567535,2567542..2567544, 2567554..2567556) /gene="talA" /locus_tag="SF2506" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188644" misc_feature 2567050..2567052 /gene="talA" /locus_tag="SF2506" /note="catalytic residue [active]" /db_xref="CDD:188644" gene 2567630..2569633 /gene="tktB" /locus_tag="SF2507" /db_xref="GeneID:1026776" CDS 2567630..2569633 /gene="tktB" /locus_tag="SF2507" /note="Code: G; COG: COG0021" /codon_start=1 /transl_table=11 /product="transketolase" /protein_id="NP_708304.2" /db_xref="GeneID:1026776" /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL KHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI GYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGH DPQAVKEAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEEAHGAPLGEEEVALARQKL GWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQLAEEFPRRMSGGLPK DWEKTTQKYINELQANPAKIATRKASQNTLNAYGPMLPELLGGSADLAPSNLTIWKGS VSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALM KARQIMVYTHDSIGLGEDGPTHQAVEQLASLRLTPNFSTWRPCDQMEAAVGWKLAVER HNGPTALILSRQNLAQVERTPDQVKEIARGGYVLKDSGGKPDIILIATGSEMEITLQA AEKLAGEGRNVRVVSLPSTDIFDAQDEEYRESVLPSNVAARVAVEAGIADYWYKYVGL KGAIVGMTGYGESAPADKLFPFFGFTAENIVAKAHKVLGVKGA" misc_feature 2567633..2569615 /gene="tktB" /locus_tag="SF2507" /note="Transketolase [Carbohydrate transport and metabolism]; Region: TktA; COG0021" /db_xref="CDD:439792" gene complement(2569736..2570779) /locus_tag="SF2508" /db_xref="GeneID:1025597" CDS complement(2569736..2570779) /locus_tag="SF2508" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708305.2" /db_xref="GeneID:1025597" /translation="MRYRIFLLFFFALLPTSLVWAAPAQRAFSDWQVTCNNQNFCVAR NTGDHNGLVMTLSRSAGAHTDAVLRIERGGLKSPDASEGEIAPRLLLDGEPLALSGDK WRISPWLLVTDDTATITAFLQIIQEGKAITLRDGNQTISLSGLKAALLFIDAQQKRVG SETAWIKKGDEPPLSVPPAPALKEVAVVNPTPTPLSLEERNDLLDYGNWRMNGLRCSL DPLRREVNVTALTDDKALMMISCEAGAYNTIDLAWIVSRKKPLASRPVRLRLPFNNGQ ETNELELMNATFDEKSRELVTLAKGRGLSDCGIQARWRFDGQRFRLVRYAAEPTCDNW HGPDARPTLWITR" misc_feature complement(2569739..2570707) /locus_tag="SF2508" /note="Protein of unknown function (DUF1176); Region: DUF1176; pfam06674" /db_xref="CDD:461982" gene complement(2570905..2571480) /gene="yffH" /locus_tag="SF2509" /db_xref="GeneID:1025501" CDS complement(2570905..2571480) /gene="yffH" /locus_tag="SF2509" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="GDP-mannose pyrophosphatase NudK" /protein_id="NP_708306.1" /db_xref="GeneID:1025501" /translation="MTQQITLIKDKILSDNYFTLHNITYDLTRKDGEVIRHKREVYDR GNGATILLYNAKKKSVVLIRQFRVATWVNGNESGQLIETCAGLLDNDEPEVCIRKEAI EETGYEVGEVRKLFELYMSPGGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPF SQALEMIKTGEIRDGKTVLLLNYLQMSHLMD" misc_feature complement(2570908..2571480) /gene="yffH" /locus_tag="SF2509" /note="GDP-mannose pyrophosphatase NudK; Provisional; Region: PRK15009" /db_xref="CDD:184971" gene complement(2571548..2573527) /gene="yffG" /locus_tag="SF2510" /db_xref="GeneID:1023359" CDS complement(2571548..2573527) /gene="yffG" /locus_tag="SF2510" /note="Code: ER; COG: COG0493" /codon_start=1 /transl_table=11 /product="oxidoreductase Fe-S binding subunit" /protein_id="NP_708307.1" /db_xref="GeneID:1023359" /translation="MNRFIMANSQQCLGCHACEIACVMAHNDEQHVLSQHHFHPRITV IKHQQQRSAVTCHHCEDAPCARSCPNGAISHVDDSIQVNQQKCIGCKSCVVACPFGTM QIVLTPVAAGKVKATAHKCDLCAGRENGPACVENCPADALQLVTDVALSGMAKSRRLR TARQEHQPWHASTAAQEMPVMSKVEQMQATPARGEPDKLAIEARKTGFDEIYLPFRAD QAQREASRCLKFGEHSVCEWTCPLHNHIPQWIELVKAGNIDAAVELSHQTNTLPEITG RVCPQDRLCEGACTIRDEHGAVTIGNIERYISDQALAKGWRPDLSHVTKVDKRVAIIG AGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPSFKLDKSLLARRREIFSAMGI HFELNCEVGKDVSLDLLLEQYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTK QVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPG SKKEVKNAREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIEG SEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTTNPKIFAGG DAVRGADLVVTAMAEGRHAAQGIIDWLGVKSVKSH" misc_feature complement(2571566..2573527) /gene="yffG" /locus_tag="SF2510" /note="putative oxidoreductase Fe-S binding subunit; Reviewed; Region: PRK12769" /db_xref="CDD:183733" gene 2573733..2575421 /gene="narQ" /locus_tag="SF2511" /pseudo /db_xref="GeneID:1025598" misc_feature 2573733..2575421 /gene="narQ" /locus_tag="SF2511" /note="'Similar to Escherichia coli K12 sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL) gi: 1788812 (567 aa). BLAST with identity of 97% in 563 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene 2575652..2578765 /gene="acrD" /locus_tag="SF2512" /db_xref="GeneID:1025315" CDS 2575652..2578765 /gene="acrD" /locus_tag="SF2512" /note="Code: Q; COG: COG0841" /codon_start=1 /transl_table=11 /product="aminoglycoside/multidrug efflux system" /protein_id="NP_708308.1" /db_xref="GeneID:1025315" /translation="MANFFIDRPIFAWVLTILLCLTGTLAIFSLPVEQYPDLAPPNVR VTANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDE AVQQVQNQLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVAS NIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQ LGGTPSVDKQALNATINAQSLLQTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYD YLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVK ASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNT LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLS AVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLLKPLKKGEHHGQ KGFFAWFNQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLE DRGMFTTSVQLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVA RMFIRLKDWSERDSKTGTSFAIIERATKAFNQIKEARVIASSPPAISGLGSSAGFDME LQDHAGAGHDALMAARNQLLALAAENPELTRVRHNGLDDSPQLQIDIDQRKAQALGVD IDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAPYRMLPDDINLWYVRNKDGGMVP FSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMDIMESLVKQLPNGFGLE WTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLAT WMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHDLFEATLHACRQRLRPI LMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRF PLKPRPE" misc_feature 2575652..2578762 /gene="acrD" /locus_tag="SF2512" /note="multidrug efflux RND transporter permease AcrD; Region: PRK10555" /db_xref="CDD:182544" gene 2579304..2579660 /gene="yffB" /locus_tag="SF2513" /db_xref="GeneID:1025280" CDS 2579304..2579660 /gene="yffB" /locus_tag="SF2513" /note="Code: P; COG: COG1393" /codon_start=1 /transl_table=11 /product="reductase" /protein_id="NP_708309.1" /db_xref="GeneID:1025280" /translation="MVTLYGIKNCDTIKKARRWLEANNIDYRFHDYRVDGLDSELLNG FINELGWEALLNTRGTTWRKLDETTRNKITDAASAAALMTEMPAIIKRPLLCAPGKPM LLGFSDSSYQQFFHEV" misc_feature 2579304..2579657 /gene="yffB" /locus_tag="SF2513" /note="putative reductase; Provisional; Region: PRK10853" /db_xref="CDD:182780" misc_feature order(2579331..2579333,2579469..2579471,2579577..2579579, 2579619..2579621) /gene="yffB" /locus_tag="SF2513" /note="putative catalytic residues [active]" /db_xref="CDD:239333" gene 2579664..2580791 /gene="dapE" /locus_tag="SF2514" /db_xref="GeneID:1025615" CDS 2579664..2580791 /gene="dapE" /locus_tag="SF2514" /note="Code: E; COG: COG0624" /codon_start=1 /transl_table=11 /product="succinyl-diaminopimelate desuccinylase" /protein_id="NP_708310.1" /db_xref="GeneID:1025615" /translation="MSCPVIELTQQLIRRPSLSPDDAGCQALLIERLQAIGFTVERMD FADTQNFWAWRGQGETLAFAGHTDVVPPGDADRWINPPFEPTIRDGMLFGRGAADMKG SLAAMVVAAERFVAQHPNHTGRLAFLITSDEEASAHNGTVKVVEALMARNERLDYCLV GEPSSIEVVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE WDQGNEFFPATSMQIANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKAQVLALLE KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAVEHYNEIKPQLLTTGGTSDGRFIARMG AQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLVA" misc_feature 2579667..2580788 /gene="dapE" /locus_tag="SF2514" /note="succinyl-diaminopimelate desuccinylase; Reviewed; Region: PRK13009" /db_xref="CDD:237265" misc_feature order(2580207..2580209,2580240..2580251,2580267..2580269, 2580273..2580278,2580285..2580290,2580294..2580299, 2580306..2580308,2580351..2580353,2580357..2580380, 2580399..2580404,2580426..2580428,2580432..2580434, 2580627..2580629) /gene="dapE" /locus_tag="SF2514" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349886" gene 2580795..2581019 /locus_tag="SF2515" /db_xref="GeneID:1025144" CDS 2580795..2581019 /locus_tag="SF2515" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708311.3" /db_xref="GeneID:1025144" /translation="MVLQEEISMDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFL ANKPELPPHRDFNDKWDDDDDWPKKDQPKK" misc_feature 2580819..2581004 /locus_tag="SF2515" /note="hypothetical protein; Provisional; Region: PRK13664" /db_xref="CDD:184221" gene complement(2581129..2581827) /gene="ypfH" /locus_tag="SF2516" /db_xref="GeneID:1026891" CDS complement(2581129..2581827) /gene="ypfH" /locus_tag="SF2516" /note="Code: R; COG: COG0400" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="NP_708312.2" /db_xref="GeneID:1026891" /translation="MKHDHFVVQSPDKPAQQLLLLFHGVGDNPVAMGEIGSWFAPLFP DALVVSVGGAEPSGNPAGRQWFSVQGITEDNRQARVDAIMPTFIETVRYWQKQSGVGA NATALIGFSQGAIMALESIKAEPGLASRVIAFNGRYASLPETASTATTIHLIHGGEDP VIDLAHAVAAQEALISAGGDVTLDIVEDLGHAIDNRSMQFALDHLRYTIPKHYFDQAL SGGKPGDDDVIEMM" misc_feature complement(2581132..2581827) /gene="ypfH" /locus_tag="SF2516" /note="putative hydrolase; Provisional; Region: PRK11460" /db_xref="CDD:183144" gene complement(2581901..2583916) /gene="ypfI" /locus_tag="SF2517" /db_xref="GeneID:1025620" CDS complement(2581901..2583916) /gene="ypfI" /locus_tag="SF2517" /note="Code: R; COG: COG1444" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708313.1" /db_xref="GeneID:1025620" /translation="MAELTALYTLTAQMKREGICRLLVLSGEEGWCFDHALKLRDALP GDWLWISPQLDAENHCSPSALQTLLGREFRHAVFDARHGFDAAAFAALSGTLKAGSWL VLLLPVWEEWENQPDADSLRWSDCPDPIATPHFVQHLKRVLTADNDAILWRQNQPFSL AHFTPRTDWHPATGAPQPEQQQLLQQLLTMPPGVAAVTAARGRGKSALAGQLISRIAG SAIVTAPAKAATDVLAQFAGEKFRFIAPDALLASDEQADWLVVDEAAAIPAPLLHQLV SRFPRTLLTTTVQGYEGTGRGFLLKFCARFPHLHRFELQQPIRWAQGCPLEKMVSEAL VFNDENFTHTPQGNIVISAFEQTLWRSEPETPLKVYQLLSGAHYRTSPLDLRRMMDAP GQHFLQAAGENEIAGALWLVDEGGLSQELSQAVWAGFRRPRGNLVAQSLAAHGSNPLA ATLRGRRVSRIAVHPARQREGTGRQLIAGALQYTHDLDYLSVSFGYTGELWRFWQRCG FVLVRMGNHREASSGCYTAMALLPMSDAGKQLAEREHYRLRRDAQALAQWNGEMLPVD PLNDAILSDDDWLELAGFAFAHRPLLTSLGCLLRLLQTSELALPALRGRLQKNASDAQ LCTTLKLSGRKMLLVRQREEAAQALFALNEVRTERLRDRITQWQFFH" misc_feature complement(2581961..2583907) /gene="ypfI" /locus_tag="SF2517" /note="tRNA(Met) C34 N-acetyltransferase TmcA [Translation, ribosomal structure and biogenesis]; Region: TmcA; COG1444" /db_xref="CDD:441053" gene complement(2583931..2584794) /locus_tag="SF2518" /db_xref="GeneID:1025599" CDS complement(2583931..2584794) /locus_tag="SF2518" /note="Code: R; COG: COG2321" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708314.1" /db_xref="GeneID:1025599" /translation="MRWQGRRESDNVEDRRNSSGGPSMGGPGFRLPSGKGGLILLIVV LVAGYYGVDLTGLMTGQPVSQQQSTRSISPNEDEAAKFTSVIQATTEDTWGQQFEKMG KTYQQPKLVMYRGMTRTGCGAGQSIMGPFYCPADGTVYIDLSFYDDMKDKLGADGDFA QGYVIAHEVGHHVQKLLGIEPKVRQLQQNATQAEVNRLSVRMELQADCFAGVWGHSMQ QQGVLETGDLEEALNAAQAIGDDRLQQQSQGRVVPDSFTHGTSQQRYSWFKRGFDSGD PAQCNTFGKSI" misc_feature complement(2583946..2584794) /locus_tag="SF2518" /note="Putative neutral zinc metallopeptidase; Region: Zn_peptidase; pfam04228" /db_xref="CDD:427802" gene complement(2584962..2585675) /gene="purC" /locus_tag="SF2519" /db_xref="GeneID:1026813" CDS complement(2584962..2585675) /gene="purC" /locus_tag="SF2519" /note="Code: F; COG: COG0152" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole-succinocarboxamide synthase" /protein_id="NP_708315.2" /db_xref="GeneID:1026813" /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD RKGMVNNKFNYFIMSKLAEAGIPTQMERLLSDTECLVKKLDMVPVECVVRNRAAGSLV KRLGIEEGIELNPPLFDLFLKNDAMHDPMVNESYCETFGWVSKENLARMKELTYKAND VLKKLFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLEKMDKDRFRQSL GGLIEAYEAVARRLGVQLD" misc_feature complement(2584965..2585675) /gene="purC" /locus_tag="SF2519" /note="phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed; Region: PRK09362" /db_xref="CDD:181800" misc_feature complement(order(2585103..2585108,2585139..2585141, 2585307..2585309,2585418..2585420,2585424..2585426, 2585430..2585432,2585469..2585471,2585598..2585600, 2585604..2585606,2585628..2585633,2585637..2585639, 2585643..2585648,2585652..2585657)) /gene="purC" /locus_tag="SF2519" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:133470" misc_feature complement(order(2585079..2585090,2585103..2585105, 2585139..2585141,2585145..2585153,2585289..2585291, 2585307..2585309,2585313..2585315,2585376..2585384, 2585394..2585396,2585400..2585402,2585406..2585408, 2585418..2585420,2585424..2585435,2585466..2585468, 2585568..2585570,2585604..2585606,2585631..2585633, 2585637..2585648,2585652..2585654)) /gene="purC" /locus_tag="SF2519" /note="active site" /db_xref="CDD:133470" misc_feature complement(order(2585079..2585090,2585145..2585153, 2585289..2585291,2585313..2585315,2585376..2585384, 2585394..2585396,2585400..2585402,2585406..2585408, 2585568..2585570)) /gene="purC" /locus_tag="SF2519" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133470" gene complement(2585888..2586922) /gene="nlpB" /locus_tag="SF2520" /db_xref="GeneID:1026777" CDS complement(2585888..2586922) /gene="nlpB" /locus_tag="SF2520" /note="Code: M; COG: COG3317" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_708316.2" /db_xref="GeneID:1026777" /translation="MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDEAYLEA APLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGARTQFTGD TASLLVENGRGNTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGR YQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSATDAAN AAQNRASTTMDVQSAADDTGLPMLVVRGPFNVVWQRLPAALEKVGMKVTDSTRSQGNM AVTYKPLSDSDWQELGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL VAVFQAAFSK" misc_feature complement(2585891..2586922) /gene="nlpB" /locus_tag="SF2520" /note="outer membrane protein assembly factor BamC; Region: PRK11679" /db_xref="CDD:236955" gene complement(2586939..2587817) /gene="dapA" /locus_tag="SF2521" /db_xref="GeneID:1025451" CDS complement(2586939..2587817) /gene="dapA" /locus_tag="SF2521" /note="Code: EM; COG: COG0329" /codon_start=1 /transl_table=11 /product="4-hydroxy-tetrahydrodipicolinate synthase" /protein_id="NP_708317.2" /db_xref="GeneID:1025451" /translation="MFTGSIVAIVTPMDEKGNVCRASLKKLIDYHVASGTSAIVSVGT TGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT VTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSRTGCDLLPETVGRLAKVKNIIGI KEATGNLTRVNQIKELVSDDFVLLSGDDASALDFMQLGGHGVISVTANVAARDMAQMC KLAAEGHFAEARVINQRLMPLHNKLFVEPNPIPVKWACKELGLVATDTLRLPMTPITD SGRETVRAALKHAGLL" misc_feature complement(2586951..2587808) /gene="dapA" /locus_tag="SF2521" /note="4-hydroxy-tetrahydrodipicolinate synthase; Region: dapA; TIGR00674" /db_xref="CDD:129757" misc_feature complement(order(2587008..2587010,2587014..2587016, 2587071..2587076,2587404..2587406,2587410..2587412, 2587497..2587505,2587572..2587574,2587578..2587580, 2587677..2587691)) /gene="dapA" /locus_tag="SF2521" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188637" misc_feature complement(order(2587254..2587256,2587260..2587262, 2587335..2587337,2587404..2587406,2587419..2587421, 2587683..2587688)) /gene="dapA" /locus_tag="SF2521" /note="active site" /db_xref="CDD:188637" misc_feature complement(2587335..2587337) /gene="dapA" /locus_tag="SF2521" /note="catalytic residue [active]" /db_xref="CDD:188637" gene 2587963..2588535 /gene="gcvR" /locus_tag="SF2522" /db_xref="GeneID:1025873" CDS 2587963..2588535 /gene="gcvR" /locus_tag="SF2522" /note="Code: R; COG: COG2716" /codon_start=1 /transl_table=11 /product="glycine cleavage system transcriptional repressor" /protein_id="NP_708318.1" /db_xref="GeneID:1025873" /translation="MTLSSQHYLVITALGADRPGIVNTITRHVSSCGCNIEDSRLAML GEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVMKRTTARPRPPMPASVWVQVDV ADSPHLIERFTALFDAHHMNIAELVSRTQPAENERAAQLHIQITAHSPASADAANIEQ AFKALCTELNAQGSINVVNYSQHDEQDGVK" misc_feature 2587963..2588532 /gene="gcvR" /locus_tag="SF2522" /note="glycine cleavage system transcriptional repressor; Provisional; Region: gcvR; PRK11589" /db_xref="CDD:236935" gene 2588535..2589005 /gene="bcp" /locus_tag="SF2523" /db_xref="GeneID:1024383" CDS 2588535..2589005 /gene="bcp" /locus_tag="SF2523" /note="Code: O; COG: COG1225" /codon_start=1 /transl_table=11 /product="thioredoxin-dependent thiol peroxidase" /protein_id="NP_708319.1" /db_xref="GeneID:1024383" /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVCEQ FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFDDFKTSNHHDVVLNWLKEHA" misc_feature 2588535..2588996 /gene="bcp" /locus_tag="SF2523" /note="thioredoxin-dependent thiol peroxidase; Reviewed; Region: bcp; PRK09437" /db_xref="CDD:181857" misc_feature order(2588661..2588663,2588670..2588672,2588895..2588897) /gene="bcp" /locus_tag="SF2523" /note="catalytic triad [active]" /db_xref="CDD:239315" gene 2589258..2589875 /gene="hyfA" /locus_tag="SF2524" /db_xref="GeneID:1025592" CDS 2589258..2589875 /gene="hyfA" /locus_tag="SF2524" /note="Code: C; COG: COG1142" /codon_start=1 /transl_table=11 /product="hydrogenase 4 Fe-S subunit" /protein_id="NP_708320.1" /db_xref="GeneID:1025592" /translation="MNRFVVAEPLWCTGCNTCLAACSDVHKTQGLQQHPRLALAKTST ITAPVVCHHCEEAPCLQVCPVNAISQRDDAIQLNESLCIGCKLCAVVCPFGAISASGS RPVNAHAQYVFQAEGSLKDGEENVPPQHALLRWEPGVQTVAVKCDLCDFLPEGPACVR ACPNQALRLITDDSLQRQMKEKQRLAASWFANGGESPLSLTQEQH" misc_feature 2589267..2589767 /gene="hyfA" /locus_tag="SF2524" /note="HycB, HydN and similar proteins; Region: HycB_like; cd10554" /db_xref="CDD:319876" gene 2589875..2591892 /gene="hyfB" /locus_tag="SF2525" /pseudo /db_xref="GeneID:1025600" misc_feature 2589875..2591892 /gene="hyfB" /locus_tag="SF2525" /note="Similar to Escherichia coli K12 hydrogenase 4 membrane subunit gi: 1788827 (673 aa). BLAST with identity of 98% in 673 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2591903..2592850 /gene="hyfC" /locus_tag="SF2526" /db_xref="GeneID:1025609" CDS 2591903..2592850 /gene="hyfC" /locus_tag="SF2526" /note="Code: C; COG: COG0650" /codon_start=1 /transl_table=11 /product="hydrogenase 4 membrane subunit" /protein_id="NP_708321.1" /db_xref="GeneID:1025609" /translation="MRQTLCDGYLVIFALAQAVILLMLTPLFTGISRQIRARMHSRRG PGIWQDYRDIHKLFKRQEVAPTSSGLMFRLMPWVLISSMLVLAMALPLFITVSPFAGG GDLITLIYLLALFRFFFALSGLDTGSPFAGVGASRELTLGILVEPMLILSLLVLALIA GSTHIEMISNTLAMGWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTE YSGAGLALAKWGLGLKQVVMAALFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFV LASIAENTLARGRFLLIHHVTWLGFSLAALAWVFWLTGL" misc_feature 2591927..2592838 /gene="hyfC" /locus_tag="SF2526" /note="Formate hydrogenlyase subunit HyfC [Energy production and conversion]; Region: HyfC; COG0650" /db_xref="CDD:440415" gene 2592867..2594306 /gene="hyfD" /locus_tag="SF2527" /db_xref="GeneID:1025607" CDS 2592867..2594306 /gene="hyfD" /locus_tag="SF2527" /note="Code: CP; COG: COG1009" /codon_start=1 /transl_table=11 /product="hydrogenase 4 subunit D" /protein_id="NP_708322.1" /db_xref="GeneID:1025607" /translation="MENLALTTLMLPFIGALVVSFSPQRRAAEWGVLFAALTTLCMLS LISAFYQADKVAVTLTLVNVGDVALFGLVIDRVSTLILFVVVFLGLLVTIYSTGYLTD KNREHPHNGTNRYYAFLLVFIGAMAGLVLSSTLLGQLLFFEITGGCSWALISYYQSDK AQRSALKALLITHIGSLGLYLAAATLFLQTGTFVLSAMSELHGDARYLVYGGILFAAW GKSAQLPMQAWLPDAMEAPTPISAYLHAASMVKVGVYIFARAIIDGGNIPHVIGGVGM VMTLVTILYGFLMYLPQQDMKRLLAWSTITQLGWMFFGLSLSIFGSRLALEGSIAYIV NHAFAKSLFFLVAGALSYSCGTRLLPRLRGVLHTLPLPGVGFCVAALAITGVPPFNGF FSKFPLFAAGFALSVEYWILLPAMILLMIESVASFAWFIRWFGRVVPGKPSEAVADAA PLPGSMRLVLIVLIVMSLISSVIAATWLQ" misc_feature 2592870..2594303 /gene="hyfD" /locus_tag="SF2527" /note="hydrogenase 4 subunit D; Validated; Region: PRK06525" /db_xref="CDD:180606" gene 2594318..2594968 /gene="hyfE" /locus_tag="SF2528" /db_xref="GeneID:1025165" CDS 2594318..2594968 /gene="hyfE" /locus_tag="SF2528" /codon_start=1 /transl_table=11 /product="hydrogenase 4 membrane subunit" /protein_id="NP_708323.1" /db_xref="GeneID:1025165" /translation="MTGSMIVNNLAGLMMLTSLFVISVKSYRLSCGFYACQSLVLVSI FATLSCLFAAEQLLIWSASAFITKVLLVPLIMTYAARNIPQNIPEKALFGPAMMALLA ALIVLLCAFVVQPVKLPMATGLKPALAVALGHFLLGLLCIVSQRNILRQIFGYCLMEN GSHLVLALLAWRAPELVEIGIATDAIFAVIVMVLLARKIWRTHGTLDVNNLTALKG" misc_feature 2594318..2594965 /gene="hyfE" /locus_tag="SF2528" /note="hydrogenase 4 membrane subunit; Provisional; Region: hyfE; PRK11492" /db_xref="CDD:236916" gene 2594973..2596559 /gene="hyfF" /locus_tag="SF2529" /db_xref="GeneID:1025366" CDS 2594973..2596559 /gene="hyfF" /locus_tag="SF2529" /note="Code: CP; COG: COG0651" /codon_start=1 /transl_table=11 /product="hydrogenase 4 subunit F" /protein_id="NP_708324.1" /db_xref="GeneID:1025366" /translation="MSYSVMFALLLLTPLLFSLLCFACRKRGLSATCTVTVLHSLGIT LLLILALWVVQTAADAGEIFAAGLWLHIDGLGGLFLAILGVIGFLTGVYSIGYMRHEV AHGELSPVTLCDYYGFFHLFLFTMLLVVTSNNLIVMWAAIEATTLSSAFLVGIYGQRS SLESAWKYIIICTVGVAFGLFGTVLVYANAASVMPQAEMAIFWSEVLKQSSLLDPTLM LLAFVFVLIGFGTKTGLFPMHAWLPDAHSEAPSPVSALLSAVLLNCALLVLIRYYIII CQAIGSDFPNRLLLIFGMLSVAVAAFFILVQRDIKRLLAYSSVENMGLVAVALGIGGP LGIFAALLHTLNHSLAKTLLFCGSGNVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGAL ALALAGMPPFNIFLSEFMTVTAGLARNHLLIIVLLLLLLTLVLAGLVRMAARVLMAKP PQAVNRGDLGWLTTSPMVILLVMMLAMGTHIPQPVIRILAGASTIVLSGTHDLPAQRS TWHDFLPSGTASVSEKHSER" misc_feature 2594973..2596463 /gene="hyfF" /locus_tag="SF2529" /note="hydrogenase 4 subunit F; Validated; Region: PRK06458" /db_xref="CDD:235805" gene 2596549..2598263 /locus_tag="SF2530" /pseudogene="unknown" /db_xref="GeneID:1025614" gene 2598273..2598818 /gene="hyfH" /locus_tag="SF2532" /db_xref="GeneID:1025619" CDS 2598273..2598818 /gene="hyfH" /locus_tag="SF2532" /note="Code: C; COG: COG1143" /codon_start=1 /transl_table=11 /product="hydrogenase 4 subunit H" /protein_id="NP_708327.1" /db_xref="GeneID:1025619" /translation="MLKLLKTIMRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG ACACACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTH KADLYTHATFHLQRCSRCERPFAPQKTVALAAELLAQQQNAPQNREMLWAQASVCPEC KQRATLINDDTDVPLVAKEQL" misc_feature 2598273..2598815 /gene="hyfH" /locus_tag="SF2532" /note="hydrogenase 4 subunit H; Validated; Region: PRK08222" /db_xref="CDD:181301" gene 2598815..2599573 /gene="hyfI" /locus_tag="SF2533" /db_xref="GeneID:1023942" CDS 2598815..2599573 /gene="hyfI" /locus_tag="SF2533" /note="Code: C; COG: COG3260" /codon_start=1 /transl_table=11 /product="hydrogenase 4 Fe-S subunit" /protein_id="NP_708328.1" /db_xref="GeneID:1023942" /translation="MSPVLTQYVSQPITLDEQTQKMKRHLLQDIRRSAYVYRIDCGGC NACEIEIFAAITPVFDAERFGIKVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDH KICVSYGACGVGGGIFHDLYSVWGGSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQ QKIHAVDYRDPTGVTMQPLWPQIPPSQRIAIEREARRLAGYRQGREICDRLLRHLSDD PTGNRVNTWLRDADDPRLNSIVQQLFRVLRGLHD" misc_feature 2598902..2599306 /gene="hyfI" /locus_tag="SF2533" /note="Ni,Fe-hydrogenase III small subunit [Energy production and conversion]; Region: HycG; COG3260" /db_xref="CDD:442491" gene 2599503..2599979 /locus_tag="SF2534" /db_xref="GeneID:1025608" CDS 2599503..2599979 /locus_tag="SF2534" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase maturation protein HycH" /protein_id="NP_708329.2" /db_xref="GeneID:1025608" /translation="MPTIHVSIVSFSNSFAYSGGYMTEECGEIVFWTLRKKFVASSDE MPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVEEEQARRKMLGVMTF GEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVLEPAIYLMARKIA" misc_feature 2599578..2599973 /locus_tag="SF2534" /note="formate hydrogenlyase maturation protein HycH; Provisional; Region: PRK15084" /db_xref="CDD:185042" gene 2600009..2602021 /locus_tag="SF2535" /pseudogene="unknown" /db_xref="GeneID:1025616" gene 2602043..2602915 /gene="focB" /locus_tag="SF2536" /pseudo /db_xref="GeneID:1025610" misc_feature 2602043..2602915 /gene="focB" /locus_tag="SF2536" /note="Similar to Escherichia coli K12 probable formate transporter (formate channel 2) gi: 1788837 (283 aa). BLAST with identity of 98% in 291 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(2603009..2604070) /gene="perM" /locus_tag="SF2537" /db_xref="GeneID:1025318" CDS complement(2603009..2604070) /gene="perM" /locus_tag="SF2537" /note="Code: R; COG: COG0628" /codon_start=1 /transl_table=11 /product="permease" /protein_id="NP_708331.1" /db_xref="GeneID:1025318" /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFGIIFFFSGLLAPLLV AIVLAYLLEWPTVRLQSIGCSRRWATSIVLVVFVGILLLMAFVVLPIAWQQGIYLIRD MPGMLNKLSDFAATLPRRYPVLMDAGIIDAMAENMRSRMLTMGDSVVKISLASLVGLL TIAVYLVLVPLMVFFLLKDKEQMLNAVRRVLPRNRGLAGQVWKEMNQQITNYIRGKVL EMIVVGIATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGAGT EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL ATLIKAVIHAWPDGQIAQE" misc_feature complement(2603033..2604016) /gene="perM" /locus_tag="SF2537" /note="AI-2E family transporter; Region: AI-2E_transport; pfam01594" /db_xref="CDD:279875" gene 2604283..2605746 /locus_tag="SF2538" /db_xref="GeneID:1027179" CDS 2604283..2605746 /locus_tag="SF2538" /note="Code: O; COG: COG0501" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708332.1" /db_xref="GeneID:1027179" /translation="MFRQLKKNLVATLIAAMTIGQVAPAFADSADTLPDMGTSAGSTL SIGQEMQMGDYYVRQLRGSAPLINDPLLTQYINSLGMRLVSHANSVKTPFHFFLINND EINAFAFFGGNVVLHSALFRYSDNESQLASVMAHEISHVTQRHLARAMEDQQRSAPLT WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRSGFD PQAMPTFLEKLLDQARYSSRPPEILLTHPLPESRLADARNRANQMRPMVVQSSEDFYL AKARTLGMYNSGRNQLTSDLLDEWAKGNVRQQRAAQYGRALQAMEANKYDEARKTLQP LLAAEPGNAWYLDLATDIDLGQNKANEAINRLKNARDLRTNPVLQLNLANAYLQGGQP QEAANILNRYTFNNKDDSNGWDLLAQAEAALNNRDQELAARAEGYALAGRLDQAISLL SSASSQVKLGSLQQARYDARIDQLRQLQERFKPYTKM" misc_feature 2604424..2605068 /locus_tag="SF2538" /note="Peptidase M48C Ste24p bepA-like, integral membrane protein; Region: M48C_bepA_like; cd07333" /db_xref="CDD:320692" misc_feature order(2604688..2604693,2604700..2604702,2604883..2604885, 2604895..2604897,2605018..2605020) /locus_tag="SF2538" /note="putative active site [active]" /db_xref="CDD:320692" misc_feature order(2604688..2604690,2604700..2604702,2604883..2604885, 2605018..2605020) /locus_tag="SF2538" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:320692" misc_feature 2605201..2605602 /locus_tag="SF2538" /note="Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones]; Region: BepA; COG4783" /db_xref="CDD:443813" misc_feature 2605213..2605293 /locus_tag="SF2538" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(2605219..2605224,2605231..2605236,2605240..2605242, 2605312..2605314,2605318..2605323,2605330..2605332, 2605336..2605338,2605342..2605347,2605411..2605413, 2605420..2605425,2605432..2605437,2605444..2605446) /locus_tag="SF2538" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 2605306..2605398 /locus_tag="SF2538" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 2605408..2605485 /locus_tag="SF2538" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene 2605767..2606126 /locus_tag="SF2539" /db_xref="GeneID:1026779" CDS 2605767..2606126 /locus_tag="SF2539" /note="Code: P; COG: COG1393" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_708333.1" /db_xref="GeneID:1026779" /translation="MTKQVKIYHNPRCSKSRETLNLLKENGVEPEVVLYLETPADAAT LRDLLKMLGMNSARELMRQKEDLYKELNLADSSLSEEALIQAMVDNPKLMERPIMVAN GKARIGRPPEQVLEIVG" misc_feature 2605779..2606117 /locus_tag="SF2539" /note="Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the...; Region: ArsC_ArsC; cd03034" /db_xref="CDD:239332" misc_feature order(2605803..2605805,2605950..2605952,2606052..2606054, 2606091..2606093) /locus_tag="SF2539" /note="catalytic residues [active]" /db_xref="CDD:239332" gene complement(2606259..2607005) /locus_tag="SF2540" /db_xref="GeneID:1025084" CDS complement(2606259..2607005) /locus_tag="SF2540" /note="Code: L; COG: COG0593" /codon_start=1 /transl_table=11 /product="DNA replication initiation factor" /protein_id="NP_708334.1" /db_xref="GeneID:1025084" /translation="MVNFSRFCEILVEVSLNTPAQLSLPLYLPDDETFASFWPGDNSS LLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVP EVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNL GLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRT LFMTLDQLDRASITAQRKLTIPFVKEILKL" misc_feature complement(2606262..2606966) /locus_tag="SF2540" /note="DnaA inactivator Hda; Region: PRK08084" /db_xref="CDD:181224" gene complement(2607055..2608344) /gene="uraA" /locus_tag="SF2541" /db_xref="GeneID:1026732" CDS complement(2607055..2608344) /gene="uraA" /locus_tag="SF2541" /note="Code: F; COG: COG2233" /codon_start=1 /transl_table=11 /product="uracil transporter" /protein_id="NP_708335.2" /db_xref="GeneID:1026732" /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC LVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAEGQTPNSKTII ISITTLAVTVLGSVLFRGFLAIIPILIGVLVGYALSFAMGIVDTTPIINAHWFALPTL YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVI SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVM GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVNIGAAELKGM ALATIVGIGLSLIFKLISVLRPEKVVLDAEDADITDK" misc_feature complement(2607058..2608341) /gene="uraA" /locus_tag="SF2541" /note="uracil transporter; Provisional; Region: PRK10720" /db_xref="CDD:236744" gene complement(2608430..2609056) /gene="upp" /locus_tag="SF2542" /db_xref="GeneID:1026868" CDS complement(2608430..2609056) /gene="upp" /locus_tag="SF2542" /note="Code: F; COG: COG0035" /codon_start=1 /transl_table=11 /product="uracil phosphoribosyltransferase" /protein_id="NP_708336.2" /db_xref="GeneID:1026868" /translation="MKIVEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEAT ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMY RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK" misc_feature complement(2608433..2609056) /gene="upp" /locus_tag="SF2542" /note="uracil phosphoribosyltransferase; Reviewed; Region: upp; PRK00129" /db_xref="CDD:234653" misc_feature complement(order(2608571..2608573,2608643..2608657, 2608661..2608669,2608820..2608822,2608826..2608828)) /gene="upp" /locus_tag="SF2542" /note="active site" /db_xref="CDD:206754" gene 2609365..2610417 /gene="purM" /locus_tag="SF2543" /db_xref="GeneID:1024382" CDS 2609365..2610417 /gene="purM" /locus_tag="SF2543" /note="Code: F; COG: COG0150" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole synthetase" /protein_id="NP_708337.1" /db_xref="GeneID:1024382" /translation="MGTQAVTDKTSLSYKDAGVDIDAGNALVGRIKGVVKKTRRPEVM GGLGGFGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDTIGIDLVAMCVNDLVV QGAEPLFFLDYYATGKLDVDTASAVISGIAEGCLQSGCSLVGGETAEMPGMYHGEDYD VAGFCVGVVEKSEIIDGSKVSDGDVLIALGSSGPHSNGYSLVRKILEVSGCDPQTTEL DGKPLADHLLAPTRIYVKSVLELIEKVDVHAIAHLTGGGFWENIPRVLPDNTQAVIDE SSWQWPEVFNWLQTAGNVERHEMYRTFNCGVGMIIALPAPEVDKALALLNANGENAWK IGIIKASDSEQRVVIE" misc_feature 2609386..2610411 /gene="purM" /locus_tag="SF2543" /note="Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]; Region: PurM; COG0150" /db_xref="CDD:439920" gene 2610417..2611055 /gene="purN" /locus_tag="SF2544" /db_xref="GeneID:1025613" CDS 2610417..2611055 /gene="purN" /locus_tag="SF2544" /note="Code: F; COG: COG0299" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase" /protein_id="NP_708338.1" /db_xref="GeneID:1025613" /translation="MNIVVLISGNGSNLQAIIDACKTNKIKGTVRAVFSNKADAFGLE RARQAGIATHTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFMRILSPAFVSHYAG RLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAGD TEDDITARVQTQEHAIYPLVISWFADGRLKMHENAAWLDGQRLPPQGYAADE" misc_feature 2610417..2611019 /gene="purN" /locus_tag="SF2544" /note="Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Region: PurN; COG0299" /db_xref="CDD:440068" gene 2611227..2613293 /gene="ppk" /locus_tag="SF2545" /db_xref="GeneID:1026789" CDS 2611227..2613293 /gene="ppk" /locus_tag="SF2545" /note="Code: P; COG: COG0855" /codon_start=1 /transl_table=11 /product="polyphosphate kinase" /protein_id="NP_708339.2" /db_xref="GeneID:1026789" /translation="MGQEKLYIEKELSWLSFNERVLQEAADKSNPLIERMRFLGIYSN NLDEFYKVRFAELKRRIIISEEQGSNAHSRHLLGKIQSRVLKADQEFDGLYNELLLEM ARNQIFLINERQLSVNQQNWLRHYFKQYLRQHITPILINPDTDLVQFLKDDYTYLAVE IIRSDSIRYALLEIPSDKVPRFVNLPPEAPRRRKPMILLDNILRYCLDDIFKGFFDYD ALNAYSMKMTRDAEYDLVHEMEASLMELMSSSLKQRLTAEPVRFVYQRDMPNALVEVL REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHIWFDKAQFRNGFD AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKENGEVV RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ NSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGM CSLIPNLEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEV ATPLLDPRLKQRVLDIIDILFSDTVKARYIDKELSNRYVPRGNRRKVRAQLAIYDYIK SLEQPE" misc_feature 2611245..2613266 /gene="ppk" /locus_tag="SF2545" /note="polyphosphate kinase 1; Region: poly_P_kin; TIGR03705" /db_xref="CDD:274734" gene 2613298..2614839 /gene="ppx" /locus_tag="SF2546" /db_xref="GeneID:1025627" CDS 2613298..2614839 /gene="ppx" /locus_tag="SF2546" /note="Code: FP; COG: COG0248" /codon_start=1 /transl_table=11 /product="exopolyphosphatase" /protein_id="NP_708340.1" /db_xref="GeneID:1025627" /translation="MPIHDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR VHLADGLGPDNMLSEEAMTRGLNCLSLFAERLQGFSPASVCIVGTHTLRQALNATDFL KRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPI LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQFRIQGWNVAMGASG TIKAAHEVLMEMGEKDGIITPERLEKLVKEILRHRNFASLSLPGLSEERKTVFVPGLA ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTASSLANQYHIDSEQAR RVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQNS DLPGFNQEQQLMMATLVRYHRKAIKLDDLPRFTLFKKKQFLPLIQLLRLGVLLNNQRQ ATTTPPTLTLITDDSHWTLRFPHDWFSQNALVLLDLEKEQEYWEGVAGWRLKIEEEST PEIAA" misc_feature 2613298..2614836 /gene="ppx" /locus_tag="SF2546" /note="exopolyphosphatase; Provisional; Region: PRK10854" /db_xref="CDD:182781" misc_feature complement(2614878..2618388) /note="Similar to Escherichia coli K12 cytochrome C-type biogenesis protein gi: 1788849 (748 aa). BLAST with identity of 99% in 1170 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element 2615989..2617252 /mobile_element_type="insertion sequence:IS600" gene 2616053..2616355 /locus_tag="SF2547" /db_xref="GeneID:1023999" CDS 2616053..2616355 /locus_tag="SF2547" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_708341.1" /db_xref="GeneID:1023999" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 2616053..2616325 /locus_tag="SF2547" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2616391..2617209 /locus_tag="SF2548" /db_xref="GeneID:1023580" CDS 2616391..2617209 /locus_tag="SF2548" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_708342.1" /db_xref="GeneID:1023580" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA" misc_feature <2616391..2617182 /locus_tag="SF2548" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(2618570..2618722) /locus_tag="SF2548a" /db_xref="GeneID:16608349" CDS complement(2618570..2618722) /locus_tag="SF2548a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439271.1" /db_xref="GeneID:16608349" /translation="MSHAVDGTYIKAQQDKMVNSSLCKKASVDTYFNVMEVNLIIYND DVIMMN" gene 2618740..2618931 /locus_tag="SF2550" /db_xref="GeneID:1025611" CDS 2618740..2618931 /locus_tag="SF2550" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708343.1" /db_xref="GeneID:1025611" /translation="MSQATSMRKRHRFNSRMTRIVLLISFIFFFGRFIYSSVGAWQHH QSKKEAQQSTLSVESPVQR" misc_feature 2618758..2618886 /locus_tag="SF2550" /note="Protein of unknown function (DUF2633); Region: DUF2633; pfam11119" /db_xref="CDD:463225" gene 2619242..2619760 /locus_tag="SF2551" /db_xref="GeneID:1027587" CDS 2619242..2619760 /locus_tag="SF2551" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_708344.1" /db_xref="GeneID:1027587" /translation="MMKFKKCLLPVAMLASFTLAGCQSNADDHAADVYQTDQLNTKQE TKTVNIISILPAKVAVDNSQNKRNAQAFGALIGAVAGGVIGHNVGSGSNSGTTAGAVG GGAVGAAAGSMVNDKTLVEGVSLTYKEGTKVYTSTQEGKECQFTTGLAVVITTTYNET RIQPNTKCPEKS" misc_feature 2619254..2619736 /locus_tag="SF2551" /note="Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis]; Region: SlyB; COG3133" /db_xref="CDD:442367" gene 2619776..2620315 /locus_tag="SF2552" /db_xref="GeneID:1025622" CDS 2619776..2620315 /locus_tag="SF2552" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708345.1" /db_xref="GeneID:1025622" /translation="MKKVFLCAILASLSYPAIASSLQDQLSAVAEAEQQGKNEEQRQH DEWVAERNREIQQEKQRRANAQAAANKRAATAAANKKARQDKLDAEATADKKRDQSYE DELRSLEIQKQKLALAKEEARVKRENEFIDQELKHKAAQTDVVQSEADANRNMTEGGR DLMKSVGKAEENKSDSWFN" misc_feature 2619872..2620309 /locus_tag="SF2552" /note="Family of unknown function (DUF5384); Region: DUF5384; pfam17358" /db_xref="CDD:407453" gene complement(2620410..2621987) /gene="guaA" /locus_tag="SF2553" /db_xref="GeneID:1025630" CDS complement(2620410..2621987) /gene="guaA" /locus_tag="SF2553" /note="Code: F; COG: COG0519" /codon_start=1 /transl_table=11 /product="GMP synthase" /protein_id="NP_708346.1" /db_xref="GeneID:1025630" /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA QIRDFNPSGIILSGGPESTTEENSPRAPQYVFEAGVPIFGVCYGMQTMAMQLGGHVEA SNEREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFVTVAST ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAV ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVLDM FGDHFGLNIVHVPAEDRFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTV FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS RVVYDISGKPPATIEWE" misc_feature complement(2620413..2621975) /gene="guaA" /locus_tag="SF2553" /note="GMP synthase; Reviewed; Region: guaA; PRK00074" /db_xref="CDD:234614" gene complement(2622056..2623522) /gene="guaB" /locus_tag="SF2554" /db_xref="GeneID:1027589" CDS complement(2622056..2623522) /gene="guaB" /locus_tag="SF2554" /codon_start=1 /transl_table=11 /product="inosine 5'-monophosphate dehydrogenase" /protein_id="NP_708347.2" /db_xref="GeneID:1027589" /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP TTTLREVKELTERNGFAGYPVVTEENELVGIITGRDVRFVTDLNQPVSVYMTPKERLV TVREGEAREVVLAKMHEKRVEKALVVDDEFHLIGMITVKDFQKAERKPNACKDEQGRL RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG NVATAAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVADAVEALEGTGIP VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCGTI DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS" misc_feature complement(2622104..2623501) /gene="guaB" /locus_tag="SF2554" /note="IMP dehydrogenase / GMP reductase domain; Region: IMPDH; pfam00478" /db_xref="CDD:459826" gene 2623684..2625054 /gene="xseA" /locus_tag="SF2555" /db_xref="GeneID:1025633" CDS 2623684..2625054 /gene="xseA" /locus_tag="SF2555" /note="Code: L; COG: COG1570" /codon_start=1 /transl_table=11 /product="exodeoxyribonuclease VII large subunit" /protein_id="NP_708348.2" /db_xref="GeneID:1025633" /translation="MLPSQSPAIFTVSRLNQTVRLLLEHEMGQVWISGEISNFTQPAS GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIVESM QPAGEGLLQQKYEQLKAKLQAECLFDQQYKKPLPSPAHCVGVITSKTGAALHDILHVL KRRDPSLPVIIYPTSVQGDDAPGQIVRAIELANQRNECDVLIVGRGGGSLEDLWSFND ERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEVVSRNQQELLRQVQS ARQRLEMAMDYYLANRTRRFTQIHHRLQQQHPQLRLARQQTMLERLQKRMSFALENQL KRAGQQQQRLTQRLNQQNPQPKIHRTQTRIQQLEYRLAEILRAQLSATRERFGNAVTH LEAVSPLSTLARGYSVTTATDGNVLKKVKQVKTGEMLTTRLEDGWIESEVKNIQPVKK SRKKVH" misc_feature 2623696..2625024 /gene="xseA" /locus_tag="SF2555" /note="Exonuclease VII, large subunit [Replication, recombination and repair]; Region: XseA; COG1570" /db_xref="CDD:441178" gene complement(2625051..2625302) /locus_tag="SF2556" /db_xref="GeneID:1025885" CDS complement(2625051..2625302) /locus_tag="SF2556" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708349.1" /db_xref="GeneID:1025885" /translation="MNVEGMATGGIHMELHCPKCQHVLDQDNGHARCPSCGEFIEMKA LCPDCHQPLQVLKACGAVDYFCQHGHGLISKKRVEFVLA" misc_feature complement(2625063..2625254) /locus_tag="SF2556" /note="Region: zinc-ribbons_6; pfam07191" /db_xref="CDD:429341" gene complement(2625335..2626807) /gene="engA" /locus_tag="SF2557" /db_xref="GeneID:1026778" CDS complement(2625335..2626807) /gene="engA" /locus_tag="SF2557" /note="Code: R; COG: COG1160" /codon_start=1 /transl_table=11 /product="GTP-binding protein Der" /protein_id="NP_708350.2" /db_xref="GeneID:1026778" /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR AEIEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI AKHLRSREKPTFLVVNKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL PWMEDLAPQEEVDEDAEYWAQFEAEENGEEEEEDDFDPQSLPIKLAIVGRPNVGKSTL TNRILGEERVVVYDMPGTTRDSIYIPMERDGREYVLIDTAGVRKRGKITDAVEKFSVI KTLQAIEDANVVMLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVGTSMLTRIMTMAV EDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLDVMG SPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIMKNK" misc_feature complement(2625422..2626801) /gene="engA" /locus_tag="SF2557" /note="GTP-binding protein Der; Reviewed; Region: PRK00093" /db_xref="CDD:234628" gene complement(2626925..2628103) /locus_tag="SF2558" /db_xref="GeneID:1026782" CDS complement(2626925..2628103) /locus_tag="SF2558" /note="Code: S; COG: COG1520" /codon_start=1 /transl_table=11 /product="outer membrane biogenesis protein BamB" /protein_id="NP_708351.1" /db_xref="GeneID:1026782" /translation="MQLRKLLLPGLLSVTLLSGCSLFNSEEDVVKMSPLPTVENQFTP TTAWSTSVGSGIGNFYSNLHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDG WFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDG LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPATAFGAAVVGGDNGRVSA VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQ IMWKRELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWAQSDLLHRLLTSPVLYN GNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAADGKLLIQAKDGTVYSITR " misc_feature complement(2626928..2628067) /locus_tag="SF2558" /note="outer membrane biogenesis protein BamB; Provisional; Region: PRK11138" /db_xref="CDD:236857" misc_feature complement(order(2627030..2627032,2627039..2627047, 2627054..2627056,2627060..2627062,2627153..2627155, 2627162..2627170,2627177..2627179,2627183..2627185, 2627267..2627269,2627276..2627284,2627291..2627293, 2627297..2627299,2627420..2627422,2627429..2627437, 2627444..2627446,2627450..2627452,2627555..2627557, 2627564..2627572,2627579..2627581,2627585..2627587, 2627675..2627677,2627684..2627692,2627699..2627701, 2627705..2627707,2627825..2627827,2627834..2627842, 2627849..2627851,2627855..2627857,2627960..2627962, 2627969..2627977)) /locus_tag="SF2558" /note="Trp docking motif [polypeptide binding]; other site" /db_xref="CDD:199833" misc_feature complement(order(2627123..2627125,2627315..2627317, 2627513..2627515,2627600..2627605,2627648..2627650, 2627765..2627767,2627780..2627782,2627918..2627920)) /locus_tag="SF2558" /note="active site" /db_xref="CDD:199833" gene complement(2628114..2628734) /locus_tag="SF2559" /db_xref="GeneID:1027585" CDS complement(2628114..2628734) /locus_tag="SF2559" /note="Code: S; COG: COG2976" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708352.1" /db_xref="GeneID:1027585" /translation="MEIYENENDQVEAVKRFFAENGKALAVGGILGVGALTGWRYWNS HQVDSARSASLAYQNAVTAVSEGKPDSIPAAEKFAAENKNTYGALASLELAQQFVDKN ELEKAAAQLQQGLADTSDENLKAVINLRLARVQVQLKQADAALKTLDTIKGEGWAAIV ADLRGEALLSKGDKQGARSAWEAGVKSDVTPALSEMMQMKINNLSI" misc_feature complement(2628123..2628734) /locus_tag="SF2559" /note="Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms]; Region: YfgM; COG2976" /db_xref="CDD:442215" gene complement(2628752..2630026) /gene="hisS" /locus_tag="SF2560" /db_xref="GeneID:1025634" CDS complement(2628752..2630026) /gene="hisS" /locus_tag="SF2560" /note="Code: J; COG: COG0124" /codon_start=1 /transl_table=11 /product="histidyl-tRNA synthetase" /protein_id="NP_708353.1" /db_xref="GeneID:1025634" /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP IVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE QRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGIFEH VTLELNSIGSLEARANYRDALVAFLEQHKEKLDEDCKRRMYTNPLRVLDSKNPEVQAL LNDAPALGDYLDEESREHFAGLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFKADPVVDIYLV ASGADTQSAAMALAERLRDELLGVKLMTNHGGGNFKKQFARADKWGARVAVVLGESEV ANGTAVVKDLRSGEQTAVAQDSVAAHLRTLLG" misc_feature complement(2628755..2630023) /gene="hisS" /locus_tag="SF2560" /note="Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: HisS; COG0124" /db_xref="CDD:439894" gene complement(2630129..2631256) /gene="ispG" /locus_tag="SF2561" /db_xref="GeneID:1025629" CDS complement(2630129..2631256) /gene="ispG" /locus_tag="SF2561" /note="Code: M; COG: COG0821" /codon_start=1 /transl_table=11 /product="4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)" /protein_id="NP_708354.1" /db_xref="GeneID:1025629" /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT VNQIKALERVGADIVRVSVPTMDAAEAFKLIKQRVNVPLVADIHFDYRIALKVAEYGV DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES AMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRSRGINFIACPTCSRQ EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV RKDRLDNNDMIDQLEARIRAKASQLDEARRIDVQQVGKIIT" misc_feature complement(2630180..2631256) /gene="ispG" /locus_tag="SF2561" /note="flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase; Region: ispG; PRK00366" /db_xref="CDD:234737" gene complement(2631283..2632296) /gene="yfgA" /locus_tag="SF2562" /db_xref="GeneID:1024372" CDS complement(2631283..2632296) /gene="yfgA" /locus_tag="SF2562" /note="Code: S; COG: COG1426" /codon_start=1 /transl_table=11 /product="cytoskeletal protein RodZ" /protein_id="NP_708355.1" /db_xref="GeneID:1024372" /translation="MNTEATHDQNEALTTGARLRNAREQLGLSQQAVAERLCLKVSTV RDIEEDKAPADLASTFLRGYIRSYARLVHIPEEELLPGLEKQAPLRAAKVAPMQSFSL GKRRKKRDGWLMTFTWLVLFVVIGLSGAWWWQDHKAQQEEITTMADQSSAELSSNSEQ GQSVPLNTSTTTDPATTSTPPASVDTTATNTQTPAVTAPAPAVDPQQNAVVSPSQANV DTAATPVPTAATTPDGAAPLPTDQAGVTTPAADPNALVMNFTADCWLEVTDATGKKLF SGMQRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEQS PAQ" misc_feature complement(2631301..2632296) /gene="yfgA" /locus_tag="SF2562" /note="cytoskeleton protein RodZ; Region: PRK10856" /db_xref="CDD:236776" gene complement(2632581..2633735) /gene="yfgB" /locus_tag="SF2563" /db_xref="GeneID:1026797" CDS complement(2632581..2633735) /gene="yfgB" /locus_tag="SF2563" /note="Code: R; COG: COG0820" /codon_start=1 /transl_table=11 /product="ribosomal RNA large subunit methyltransferase N" /protein_id="NP_708356.1" /db_xref="GeneID:1026797" /translation="MSEQLVTPENVTTKDGKINLLDLNRQQMREFFKDLGEKTFRADQ VMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIAVGDQ RVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAAKIVG AAKVTGQRPITNVVMMGMGEPLLNLNNVVPAMEIMLDDFGFGLSKRRVTLSTSGVVPA LDKLGDMIDVALAISLHAPNDEIRDEIVPINKKYNIETFLAAVRRYLEKSNANQGRVT IEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPDAPYGRSSNSRIDRFSKVL MSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEAIDIKAV" misc_feature complement(2632584..2633699) /gene="yfgB" /locus_tag="SF2563" /note="ribosomal RNA large subunit methyltransferase N; Provisional; Region: PRK11194" /db_xref="CDD:183031" misc_feature complement(order(2632803..2632808,2632905..2632907, 2633037..2633039,2633097..2633105,2633196..2633201, 2633205..2633207,2633337..2633345,2633349..2633351, 2633355..2633357,2633361..2633363)) /gene="yfgB" /locus_tag="SF2563" /note="FeS/SAM binding site [active]" /db_xref="CDD:100105" gene complement(2633885..2634316) /gene="ndk" /locus_tag="SF2564" /db_xref="GeneID:1027584" CDS complement(2633885..2634316) /gene="ndk" /locus_tag="SF2564" /note="Code: F; COG: COG0105" /codon_start=1 /transl_table=11 /product="mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-phosphodiesterase" /protein_id="NP_708357.1" /db_xref="GeneID:1027584" /translation="MAIERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTV EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGT LRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR" misc_feature complement(2633894..2634313) /gene="ndk" /locus_tag="SF2564" /note="Nucleoside diphosphate kinase [Nucleotide transport and metabolism]; Region: Ndk; COG0105" /db_xref="CDD:439875" gene complement(2634466..2636580) /locus_tag="SF2565" /db_xref="GeneID:1025896" CDS complement(2634466..2636580) /locus_tag="SF2565" /note="Code: M; COG: COG0744; peptidoglycan synthetase" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 1B-like protein" /protein_id="NP_708358.1" /db_xref="GeneID:1025896" /translation="MLDNLIGARYLEALINYEDRWFWKHPGVNPFSVARAAWQDLTSG RVISGGSTLTMQVARLLDPHPKTFGGKILQLWRALQLEWHLSKREILILYLNRAPFGG TLQGIGAASWAYLGKSPANLSYSEAAMLAVLPQVPSRLRPDRWPERAEAARNKVLERM AAQGVWSREQVKESREEPIWLAPRQMPQLAPLFSRMMLGKSKSDKIVTTLDAGLQRRL EELAQNWKGRLPPRSSLAMIVVNHTDMRVRGWVGSVDLNDDSRFGHVDMVNAIRSPGS VLKPFVYGLALDEGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPINMSEALVRSLNLP AVQVLEAYGPKRFAAKLRNVGLPLYLPNGAAPNLSLILGGAGAKLEDMAAAYTAFARH GKAGKLRLQPDDPLLERPLMSSGAAWIIRRIMADEAQPLPDSALPRVAPLAWKTGTSY GYRDAWAIGVNARYVIGIWTGRPDGTPVVGQFGFASAVPLLNQVNNILLSRSANLPED PRPNSVTRGVICWPGGQSLPEGDGNCRRRLATWLLDGSQPPTLLLSEQEGINGIRFPI WLDDKGQRVAADCPQAKQEMVNVWPLPLEPWLPASERRAVRLPPASTICPPYGHDAQL PLQLTGVRDGAIIKRLPGAAEATLPLQSSGGAGERWWFLNGEPLTERGRNVTLHLTDK GDYQLLVMDDVGQIATVKFVMQ" misc_feature complement(2634469..2636556) /locus_tag="SF2565" /note="penicillin-binding protein 1C; Provisional; Region: PRK11240" /db_xref="CDD:183049" mobile_element 2636556..2637925 /mobile_element_type="insertion sequence:ISSfl2" gene complement(2636565..2637779) /locus_tag="SF2566" /pseudogene="unknown" /db_xref="GeneID:1025621" gene 2638009..2638491 /gene="sseA" /locus_tag="SF2568" /pseudo /db_xref="GeneID:1025626" misc_feature 2638009..2638491 /gene="sseA" /locus_tag="SF2568" /note="Similar to Escherichia coli K12 thiosulfate sulfurtransferase gi: 1788869 (335 aa). BLAST with identity of 98% in 161 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(2639310..2640086) /gene="sseB" /locus_tag="SF2569" /db_xref="GeneID:1025631" CDS complement(2639310..2640086) /gene="sseB" /locus_tag="SF2569" /codon_start=1 /transl_table=11 /product="enhanced serine sensitivity protein SseB" /protein_id="NP_708361.2" /db_xref="GeneID:1025631" /translation="MSETKNELEDLLEKAATEPAHRPAFFRTLLESTVWVPGTAAQGE AVVEDSALDLQHWEKEDGTSVIPFFTSLEALQQAVEDEQAFVVMPVRTLFEMTLGETL FLNAKLPTGKEFMPREISLLIGEEGNPLSSQEILEGGESLILSEVAEPPAQMIDSLTT LFKTIKPVKRAFICSIKENEEAQPNLLIGIEADGDIEEIIQATGSVATDTLPGDEPID ICQVKKGEKGISHFITEHIAPFYERRWGGFLRDFKQNRII" misc_feature complement(2639319..2640056) /gene="sseB" /locus_tag="SF2569" /note="enhanced serine sensitivity protein SseB; Provisional; Region: PRK11611" /db_xref="CDD:183229" gene complement(2640228..2641511) /gene="pepB" /locus_tag="SF2570" /db_xref="GeneID:1023954" CDS complement(2640228..2641511) /gene="pepB" /locus_tag="SF2570" /note="Code: E; COG: COG0260" /codon_start=1 /transl_table=11 /product="aminopeptidase" /protein_id="NP_708362.1" /db_xref="GeneID:1023954" /translation="MTEAMKITLSTQPADARWGEKATYSINNDGITLHLNGADDLGLI QRAARKIDGLGIKHVQLSGEGWDADRCWAFWQGYKGPKGTRKVEWPDLDDAQRQELDN RLMIIDWVRDTINAPAEELGPSQLAQRAVDLISNVAGDRVTYRITKGEDLREQGYMGL HTVGRGSERSPVLLALDYNPTGDKEAPVYACLVGKGITFDSGGYSIKQTAFMDSMKSD MGGAATVTGALAFAIMRGLNKRVKLFLCCADNLISGNAFKLGDIITYRNGKKVEVMNT DAEGRLVLADGLIDASAQKPEMIIDAATLTGAAKTALGNDYHALFSFDDALAGRLLAS ASQENEPFWRLPLAEFHRSQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYQQGW LHIDCSATYRKAPVEQWSAGATGLGVRTIANLLTA" misc_feature complement(2640231..2641499) /gene="pepB" /locus_tag="SF2570" /note="aminopeptidase B; Provisional; Region: PRK05015" /db_xref="CDD:235330" gene complement(2641570..2641770) /gene="yfhJ" /locus_tag="SF2571" /db_xref="GeneID:1027588" CDS complement(2641570..2641770) /gene="yfhJ" /locus_tag="SF2571" /note="Code: S; COG: COG2975" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708363.1" /db_xref="GeneID:1027588" /translation="MGLKWTDSREIGEALYDAYPDLDPKTVRFTDMHQWICDLEDFDD DPQASNEKILEAILLVWLDEAE" misc_feature complement(2641573..2641770) /gene="yfhJ" /locus_tag="SF2571" /note="hypothetical protein; Provisional; Region: PRK10721" /db_xref="CDD:170660" gene complement(2641782..2642117) /gene="fdx" /locus_tag="SF2572" /db_xref="GeneID:1025336" CDS complement(2641782..2642117) /gene="fdx" /locus_tag="SF2572" /note="Code: C; COG: COG0633" /codon_start=1 /transl_table=11 /product="[2FE-2S] ferredoxin electron carrer protein" /protein_id="NP_708364.1" /db_xref="GeneID:1025336" /translation="MPKIVILPHQDLCPDGAVLEANSGETILDAALRNGIEIEHACEK SCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLVVEIPR YTINHAREH" misc_feature complement(2641785..2642114) /gene="fdx" /locus_tag="SF2572" /note="ferredoxin, 2Fe-2S type, ISC system; Region: fdx_isc; TIGR02007" /db_xref="CDD:131062" misc_feature complement(order(2641857..2641862,2641965..2641976, 2641983..2641985,2641992..2641994,2642001..2642006)) /gene="fdx" /locus_tag="SF2572" /note="catalytic loop [active]" /db_xref="CDD:238126" misc_feature complement(order(2641857..2641859,2641965..2641967, 2641974..2641976,2641992..2641994)) /gene="fdx" /locus_tag="SF2572" /note="iron binding site [ion binding]; other site" /db_xref="CDD:238126" gene complement(2642119..2643969) /gene="hscA" /locus_tag="SF2573" /db_xref="GeneID:1025920" CDS complement(2642119..2643969) /gene="hscA" /locus_tag="SF2573" /note="Code: O; COG: COG0443" /codon_start=1 /transl_table=11 /product="chaperone protein HscA" /protein_id="NP_708365.2" /db_xref="GeneID:1025920" /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL ADHEGRHLLPSVVHYQQQGHSVGYDARTNAALDTANTISSVKRLMGRSLADIQQRYPH LPYQFQASENGLPMIETAAGLLNPVRVSADILKALAARATEALAGELDGVVITVPAYF DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISIL RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQADIPDRSDNRVQRELLDATIAAKI ALSDADSVTVNVAGWQGEISREQFNELIAPLVKRTLLACRRALKDAGVEADEVLEVVM VGGSTRVPLVRERVGEFFGRPPLTSIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVI PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRS LARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDNAA AHLSEVAQGDDVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKGHSVDEV" misc_feature complement(2642122..2643969) /gene="hscA" /locus_tag="SF2573" /note="chaperone protein HscA; Provisional; Region: hscA; PRK05183" /db_xref="CDD:235360" gene complement(2643986..2644501) /gene="hscB" /locus_tag="SF2574" /db_xref="GeneID:1025641" CDS complement(2643986..2644501) /gene="hscB" /locus_tag="SF2574" /note="Code: O; COG: COG1076" /codon_start=1 /transl_table=11 /product="co-chaperone HscB" /protein_id="NP_708366.1" /db_xref="GeneID:1025641" /translation="MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSLAEQ LAAVQQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREEL DEIEQAKDEARLESFIKRVKKMFDTRHQLMVEQLDNEAWDAAADTVRKLRFLDKLRSS AEQLEEKLLDF" misc_feature complement(2643992..2644501) /gene="hscB" /locus_tag="SF2574" /note="co-chaperone HscB; Provisional; Region: hscB; PRK05014" /db_xref="CDD:179914" gene complement(2644597..2644920) /gene="iscA" /locus_tag="SF2575" /db_xref="GeneID:1025895" CDS complement(2644597..2644920) /gene="iscA" /locus_tag="SF2575" /note="Code: S; COG: COG0316" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster assembly protein" /protein_id="NP_708367.2" /db_xref="GeneID:1025895" /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF VDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCG ESFHV" misc_feature complement(2644600..2644920) /gene="iscA" /locus_tag="SF2575" /note="iron-sulfur cluster assembly protein IscA; Region: iscA; PRK09502" /db_xref="CDD:181914" gene complement(2644937..2645323) /locus_tag="SF2576" /db_xref="GeneID:1026942" CDS complement(2644937..2645323) /locus_tag="SF2576" /note="Code: C; COG: COG0822" /codon_start=1 /transl_table=11 /product="scaffold protein" /protein_id="NP_708368.1" /db_xref="GeneID:1026942" /translation="MAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQ IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPV KIHCSILAEDAIKAAIADYKSKREAK" misc_feature complement(2644946..2645317) /locus_tag="SF2576" /note="FeS cluster assembly scaffold IscU; Region: iscU; TIGR01999" /db_xref="CDD:188192" misc_feature complement(order(2645006..2645011,2645015..2645020, 2645129..2645131,2645135..2645137,2645210..2645215, 2645297..2645302,2645309..2645317)) /locus_tag="SF2576" /note="trimerization site [polypeptide binding]; other site" /db_xref="CDD:143480" misc_feature complement(order(2645006..2645008,2645135..2645137, 2645213..2645215)) /locus_tag="SF2576" /note="active site" /db_xref="CDD:143480" gene complement(2645351..2646565) /gene="yfhO" /locus_tag="SF2577" /db_xref="GeneID:1026950" CDS complement(2645351..2646565) /gene="yfhO" /locus_tag="SF2577" /note="Code: E; COG: COG1104" /codon_start=1 /transl_table=11 /product="cysteine desulfurase" /protein_id="NP_708369.2" /db_xref="GeneID:1026950" /translation="MKLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFG WQAEEAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMRDDTILVSIMHVNNEIGVV QDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV RRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMATEMERLRGLRNR LWNGIKDIEEVYLNGDLEHGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE PSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQ GVDLNSIEWAHH" misc_feature complement(2645354..2646565) /gene="yfhO" /locus_tag="SF2577" /note="IscS subfamily cysteine desulfurase; Region: PRK14012" /db_xref="CDD:184450" misc_feature complement(order(2645948..2645950,2645957..2645959, 2646017..2646019,2646026..2646028,2646110..2646112, 2646329..2646331,2646338..2646343)) /gene="yfhO" /locus_tag="SF2577" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99746" misc_feature complement(2645948..2645950) /gene="yfhO" /locus_tag="SF2577" /note="catalytic residue [active]" /db_xref="CDD:99746" gene complement(2646677..2647165) /locus_tag="SF2578" /db_xref="GeneID:1026947" CDS complement(2646677..2647165) /locus_tag="SF2578" /note="Code: K; COG: COG1959" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator IscR" /protein_id="NP_708370.1" /db_xref="GeneID:1026947" /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ LFSRLRKNGLVSSVRGPGGGYLLGKDASSIAVGEVISAVDESVDATRCQGKGGCQGGD KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRTRTQDAIDVKL RA" misc_feature complement(2646680..2647165) /locus_tag="SF2578" /note="Fe-S cluster assembly transcriptional regulator IscR; Region: PRK10857" /db_xref="CDD:236777" gene complement(2647435..2648175) /locus_tag="SF2579" /db_xref="GeneID:1027574" CDS complement(2647435..2648175) /locus_tag="SF2579" /note="Code: J; COG: COG0565" /codon_start=1 /transl_table=11 /product="tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ" /protein_id="NP_708371.1" /db_xref="GeneID:1027574" /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS QAIALAAGASDVIGNAHIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA EAANTPVALVFGRERVGLTNEELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW LATQENGEQVEHEETPYPLVDDLERFYGHLEQTLLATGFIRENHPGQVMNKLRRLFTR ARPESQELNILRGILASIEQQNKGNKAE" misc_feature complement(2647444..2648175) /locus_tag="SF2579" /note="tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional; Region: PRK15114" /db_xref="CDD:185069" gene 2648294..2649097 /gene="suhB" /locus_tag="SF2580" /db_xref="GeneID:1025647" CDS 2648294..2649097 /gene="suhB" /locus_tag="SF2580" /note="Code: G; COG: COG0483" /codon_start=1 /transl_table=11 /product="inositol monophosphatase" /protein_id="NP_708372.1" /db_xref="GeneID:1025647" /translation="MHPMLNIAVRAARKAGNLIAKNYETPDAVEASQKGSNDFVTNVD KAAEAVIIDTIRKSYPQHTIITEESGELEGTDQDVQWVIDPLDGTTNFIKRLPHFAVS IAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK AKQYATTYINIVGKLFNECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL LVREAGGIVSDFTGGHNYMLTGNIVAGNPRVVKAILANMRDELSDALKH" misc_feature 2648294..2649091 /gene="suhB" /locus_tag="SF2580" /note="inositol-1-monophosphatase; Region: PRK10757" /db_xref="CDD:236753" misc_feature order(2648393..2648395,2648405..2648407,2648423..2648425, 2648492..2648497,2648543..2648560,2648924..2648929) /gene="suhB" /locus_tag="SF2580" /note="active site" /db_xref="CDD:238817" misc_feature order(2648402..2648404,2648408..2648410,2648561..2648566, 2648570..2648587,2648741..2648749,2648753..2648755, 2648759..2648764,2648786..2648791,2648798..2648800, 2648807..2648812,2648819..2648821,2648831..2648851, 2648873..2648875,2648885..2648896) /gene="suhB" /locus_tag="SF2580" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238817" gene 2649242..2650096 /locus_tag="SF2581" /db_xref="GeneID:1025643" CDS 2649242..2650096 /locus_tag="SF2581" /note="Code: R; COG: COG1073" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708373.2" /db_xref="GeneID:1025643" /translation="MALPVNKRVPKILFILFVVAFCVYLVPRVAINFFYYPDDKIYGP DPWSAESVEFTAKDGTRLQGWFIPSSTGPADNAIATIIHAHGNAGNMSAHWPLVSWLP ERNFNVFMFDYRGFGKSKGTPSQAGLLDDTQSAINVVRHRSDVNPQQLVLFGQSIGGA NILAVIGQGDREGIRAVILDSTFASYATIANQMIPGSGYLLDESYSGENYIASVSPIP LLLIHGKADHVIPWQHSEKLYSLAKEPKRLILIPDGEHIDAFSDRHGNVYREQMVDFI LSALNPQN" misc_feature 2649344..2650081 /locus_tag="SF2581" /note="Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; Region: FrsA; COG1073" /db_xref="CDD:440691" gene 2650287..2651567 /gene="csiE" /locus_tag="SF2582" /db_xref="GeneID:1025635" CDS 2650287..2651567 /gene="csiE" /locus_tag="SF2582" /codon_start=1 /transl_table=11 /product="stationary phase inducible protein CsiE" /protein_id="NP_708374.2" /db_xref="GeneID:1025635" /translation="MMPTLAPPSVLSAPQRRCQILLTLFQPGLTATMATFSELNGVDD DIASLDISETGREILRYHQLTLTTGYDGSYRVEGTVLNQRLCLFHWLRRGFRLCPSFI TSQFTPALKSELKRRGIARNFYDDTNLQALVNLCSRRLQKRFESRDIHFLCLYLQYCL LQHHAGITPQFNPLQRRWAESCLEFQVAQEIGRHWQRRALQHVPPDEPLFMALLFSML RVPDPLRDAHQRDRQLRQSIKRLVNHFRELGNVRFYDEQGLCDQLYIHLAQALNRSLF AIGIDNTLPEEFARLYPRLVRTTRAALAGFESEYGVHLSDEESGLVAVIFGAWLMQEN DLHEKQIILLTGNDSEREAQIEQQLRELTLLPLNIKHMSVKAFLQTGAPRGAALIIAP YTMPLPLFSPPLIYTDLTLTTHQQEQIRKMLESA" misc_feature 2650287..2651564 /gene="csiE" /locus_tag="SF2582" /note="stationary phase inducible protein CsiE; Provisional; Region: PRK11564" /db_xref="CDD:236932" gene complement(2651559..2652698) /gene="hcaT" /locus_tag="SF2583" /db_xref="GeneID:1025637" CDS complement(2651559..2652698) /gene="hcaT" /locus_tag="SF2583" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="3-phenylpropionic acid transporter" /protein_id="NP_708375.1" /db_xref="GeneID:1025637" /translation="MVLQSTRWLALGYFTYFFSYGIFLPFWSVWLKGIGLTPETIGLL LGAGLVARFLGSLLIAPRVSDPSRLISALRVLALLPLLFAVAFWAGAHVAWLMLVMIG FNLFFSPLVPLTDALANTWQKQFPLDYGKVRLWGSVAFVIGSALTGKLVTMFDYRVIL VLLTLGVASMLLGFLIRPTIQPQGASRQQESTGWSAWLALVRQNWRFLACVCLLQGAH AAYYGFSAIYWQAAGYSASAVGYLWSLGVVAEVIIFALSNKLFRRCSARDMLLISAIC GVVRWGIMGATTALPWLIVVQILHCGTFTVCHLAAMRYIAARQVSEVIRLQAVYSAVA MGGSIAIMTVFAGFLYQYLGHGVFWVMALVALPAMFLRPKVVPSC" misc_feature complement(2651565..2652698) /gene="hcaT" /locus_tag="SF2583" /note="3-phenylpropionate MFS transporter; Region: PRK11128" /db_xref="CDD:236856" misc_feature complement(order(2651670..2651672,2651679..2651684, 2651691..2651696,2651703..2651705,2651763..2651765, 2651775..2651777,2651787..2651792,2651937..2651939, 2651949..2651951,2652030..2652032,2652039..2652047, 2652054..2652059,2652066..2652068,2652279..2652281, 2652288..2652293,2652300..2652302,2652354..2652356, 2652363..2652371,2652375..2652380,2652531..2652533, 2652627..2652629,2652636..2652641,2652648..2652653)) /gene="hcaT" /locus_tag="SF2583" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340893" gene complement(2652858..2653748) /gene="hcaR" /locus_tag="SF2584" /db_xref="GeneID:1025636" CDS complement(2652858..2653748) /gene="hcaR" /locus_tag="SF2584" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator HcaR" /protein_id="NP_708376.2" /db_xref="GeneID:1025636" /translation="MELRHLRYFVAVAQALNFTRAAEKLHTSQPSLSSQIRDLENCVG VPLLVRDKRKVALTAAGECFLQDALAILEQAENAKLRARKIVQEDRQLTIGFVPSAEV NLLPKVLPMFRLRQPDTLIELVSLITTQQEEKIRRGELDVGLMRHPVYSPEIDYLELF DEPLVVVLPVDHPLAHEKEITAAQLDGVNFVSTDPAYSGSLAPIVKAWFAQENSQPNI VQVATNILVTMNLVGMGLGVTLIPGYMNNFNTGQVVFRPIAGNVPSIALLMAWKKGEM KLALRDFIAIVQERLASVTA" misc_feature complement(2652861..2653748) /gene="hcaR" /locus_tag="SF2584" /note="DNA-binding transcriptional regulator HcaR; Provisional; Region: PRK09906" /db_xref="CDD:182137" gene 2653884..2655245 /gene="hcaA1" /locus_tag="SF2585" /db_xref="GeneID:1026946" CDS 2653884..2655245 /gene="hcaA1" /locus_tag="SF2585" /note="Code: PR; COG: COG2146" /codon_start=1 /transl_table=11 /product="3-phenylpropionate/cinnamic acid dioxygenase subunit alpha" /protein_id="NP_708377.1" /db_xref="GeneID:1026946" /translation="MTTPSDLNIYQLIDTQNGRVTPRIYTDPDIYQLELERIFGRCWL FLAHESQIPKPGDFFNTYMGEDAVVVVRQKDGSIKAFLNQCRHRAMRVSYADCGNSRA FTCPYHGWSYGINGELIDVPLEPRAYPQGLCKSHWGLNEVPCVESYKGLIFGNWDTSA PGLHDYLGDIAWYLDGMLDRREGGTEIVGGVQKWVINCNWKFPAEQFASDQYHALFSH ASAVQVLGAKDDGSDKRLGDGQTARPVWETAKDALQFGQDGHGSGFFFTEKPDANVWV DGAVSSYYRETYAEAEQRLGEVRALRLAGHNNIFPTLSWLNGTATLRVWHPRGPDQVE VWAFCITDKAASDEVKAAFENSATRAFGPAGFLEQDDSENWCEIQKLLKGHRARNSKL CLEMGLGQEKRRDDGIPGITNYIFSETAARGMYQRWADLLSSESWQEVLDKTAAYQQE VMK" misc_feature 2653935..>2654561 /gene="hcaA1" /locus_tag="SF2585" /note="Phenylpropionate dioxygenase or related ring-hydroxylating dioxygenase, large terminal subunit [Inorganic ion transport and metabolism, General function prediction only]; Region: HcaE; COG4638" /db_xref="CDD:443676" misc_feature 2654433..2655182 /gene="hcaA1" /locus_tag="SF2585" /note="C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases; Region: RHO_alpha_C_NDO-like; cd08881" /db_xref="CDD:176890" misc_feature order(2654448..2654471,2654538..2654543,2654946..2654948, 2654955..2654960,2654973..2654975,2654979..2654981, 2654988..2654993,2654997..2655002,2655009..2655011) /gene="hcaA1" /locus_tag="SF2585" /note="beta subunit interface [polypeptide binding]; other site" /db_xref="CDD:176890" misc_feature order(2654496..2654501,2654511..2654513,2654517..2654522, 2654532..2654534,2655000..2655008,2655012..2655017, 2655021..2655044,2655051..2655071,2655135..2655137) /gene="hcaA1" /locus_tag="SF2585" /note="alpha subunit interface [polypeptide binding]; other site" /db_xref="CDD:176890" misc_feature order(2654499..2654504,2654511..2654516,2654520..2654525, 2654535..2654537,2654793..2654795,2654799..2654801, 2654829..2654831,2654964..2654966,2654982..2654984, 2654994..2654996) /gene="hcaA1" /locus_tag="SF2585" /note="active site" /db_xref="CDD:176890" misc_feature order(2654499..2654504,2654511..2654516,2654520..2654525, 2654535..2654537,2654793..2654795,2654799..2654801, 2654829..2654831,2654964..2654966,2654982..2654984) /gene="hcaA1" /locus_tag="SF2585" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176890" misc_feature order(2654520..2654522,2654535..2654537,2654994..2654996) /gene="hcaA1" /locus_tag="SF2585" /note="Fe binding site [ion binding]; other site" /db_xref="CDD:176890" gene 2655242..2655760 /gene="hcaA2" /locus_tag="SF2586" /db_xref="GeneID:1025645" CDS 2655242..2655760 /gene="hcaA2" /locus_tag="SF2586" /codon_start=1 /transl_table=11 /product="3-phenylpropionate/cinnamic acid dioxygenase subunit beta" /protein_id="NP_708378.1" /db_xref="GeneID:1025645" /translation="MSAQVSLELHHRISQFLFHEASLLDDWKFRDWLAQLDEEIRYTM RTTVNAQTRDRRKGVQPPTTWIFNDTKDQLERRIARLETGMAWAEEPPSRTRHLISNC QVSETDIPNVFAVRVNYLLYRAQKERDETFYVGTRFDKVRRLEDDNWRLLERDIVLDQ AVITSHNLSVLF" misc_feature 2655242..2655757 /gene="hcaA2" /locus_tag="SF2586" /note="3-phenylpropionate/cinnamic acid dioxygenase subunit beta; Region: PRK10069" /db_xref="CDD:236647" misc_feature order(2655386..2655391,2655431..2655439,2655443..2655448, 2655470..2655472,2655479..2655481,2655488..2655490, 2655614..2655619,2655722..2655724,2655728..2655730, 2655737..2655748) /gene="hcaA2" /locus_tag="SF2586" /note="inter-subunit interface [active]" /db_xref="CDD:238357" gene 2655760..2656080 /gene="hcaC" /locus_tag="SF2587" /db_xref="GeneID:1025644" CDS 2655760..2656080 /gene="hcaC" /locus_tag="SF2587" /note="Code: PR; COG: COG2146" /codon_start=1 /transl_table=11 /product="3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit" /protein_id="NP_708379.1" /db_xref="GeneID:1025644" /translation="MNRIYACPVADVPEGEALRIDTSPVIALFNVGGEFYAINDRCSH GNASMSEGYLEDDATVECPLHAASFCLKTGKALCLPATDPLTTYPVHVEGGDIFIDLP EAQP" misc_feature 2655760..2656077 /gene="hcaC" /locus_tag="SF2587" /note="3-phenylpropionate dioxygenase ferredoxin subunit; Provisional; Region: PRK09965" /db_xref="CDD:170182" misc_feature order(2655883..2655885,2655889..2655891,2655943..2655945, 2655952..2655954) /gene="hcaC" /locus_tag="SF2587" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:239604" gene 2656077..2656889 /gene="hcaB" /locus_tag="SF2588" /db_xref="GeneID:1026784" CDS 2656077..2656889 /gene="hcaB" /locus_tag="SF2588" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="3-phenylpropionate-dihydrodiol/cinnamic acid-dihydrodiol dehydrogenase" /protein_id="NP_708380.1" /db_xref="GeneID:1026784" /translation="MSDLHNESIFITGGGSGLGLALVERFIEEGAQVATLELSAAKVA SLRQRFGEHILAVEGNVTCYADYQRAVDQILTRSGKLDCFIGNAGIWDHNASLVNTPA ETLETGFHELFNVNVLGYLLGAKACAPALIASEGSMIFTLSNAAWYPGGGGPLYTTSK HAATGLIRQLAYELAPKVRVNGVGPCGMASDLRGPQALGQSETSIMQSLTPEKIAAIL PLQFFPQPADFTGPYVMLASRRNNRALSGVMINADAGLAIRGIRHVAAGLDL" misc_feature 2656083..2656853 /gene="hcaB" /locus_tag="SF2588" /note="cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase (BphB)-like, classical (c) SDRs; Region: BphB-like_SDR_c; cd05348" /db_xref="CDD:187606" misc_feature order(2656113..2656115,2656119..2656133,2656185..2656190, 2656200..2656202,2656251..2656259,2656335..2656343, 2656434..2656436,2656497..2656505,2656542..2656544, 2656554..2656556,2656629..2656640,2656644..2656652) /gene="hcaB" /locus_tag="SF2588" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187606" misc_feature order(2656422..2656424,2656503..2656505,2656542..2656544, 2656554..2656556) /gene="hcaB" /locus_tag="SF2588" /note="active site" /db_xref="CDD:187606" gene 2656899..2658121 /gene="hcaD" /locus_tag="SF2589" /pseudo /db_xref="GeneID:1025632" misc_feature 2656899..2658121 /gene="hcaD" /locus_tag="SF2589" /note="Similar to Escherichia coli K12 ferredoxin reductase subunit of phenylpropionate dioxygenase gi: 1788892 (401 aa). BLAST with identity of 99% in 408 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2658146..2658640 /gene="yphA" /locus_tag="SF2590" /db_xref="GeneID:1026951" CDS 2658146..2658640 /gene="yphA" /locus_tag="SF2590" /note="Code: S; COG: COG2259" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708381.1" /db_xref="GeneID:1026951" /translation="MPGAWRGARVCITFKSHYLAKGLVMNTLRYFDFGAARPVLLLIA RIAVVLIFIIFGFPKMMGFDGTVQYMASLGAPMPMLAAIIAVVMEVPAAILIVLGFFT RPLAVLFIFYTLGTAVIGHHYWDMTGDAVGPNMINFWKNVSIAGAFLLLAITGPGAIS LDRR" misc_feature 2658248..2658637 /gene="yphA" /locus_tag="SF2590" /note="Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown]; Region: DoxX; COG2259" /db_xref="CDD:441860" gene complement(2658688..2659560) /gene="yphB" /locus_tag="SF2591" /db_xref="GeneID:1026948" CDS complement(2658688..2659560) /gene="yphB" /locus_tag="SF2591" /note="Code: G; COG: COG2017" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708382.1" /db_xref="GeneID:1026948" /translation="MTIYTLSHGSLKLDVSDQGGVIEGFWRDTTPLLRPGKKSGVATD ASCFPLVPFANRVSGNRFVWQGREYQLQPNVEWDAHYLHGDGWLGEWQCVSHSDDSLC LVYEHRSGVYHYRVSQAFHLTADTLTVTLSVTNQGAETLPFGTGWHPYFPLSPQTRIQ AQASGYWLEREQWLAGEFCEQLPQELDFNQLAPLPRQWVNNGFAGWNGQARIEQPQEG YAIIMETTPPAPCYFIFVSDPAFDKGYAFDFFCLEPMSHAPDEHHRPEGCDLIALAPG ESTTSEMSLRVEWL" misc_feature complement(2658703..2659530) /gene="yphB" /locus_tag="SF2591" /note="aldose 1-epimerase, similar to Escherichia coli YphB; Region: Aldose_epim_Ec_YphB; cd09021" /db_xref="CDD:185698" misc_feature complement(order(2658802..2658804,2658859..2658861, 2658961..2658963,2659111..2659113,2659117..2659119, 2659312..2659314,2659393..2659395)) /gene="yphB" /locus_tag="SF2591" /note="active site" /db_xref="CDD:185698" misc_feature complement(order(2658802..2658804,2659117..2659119)) /gene="yphB" /locus_tag="SF2591" /note="catalytic residues [active]" /db_xref="CDD:185698" gene complement(2659572..2660666) /gene="yphC" /locus_tag="SF2592" /db_xref="GeneID:1025642" CDS complement(2659572..2660666) /gene="yphC" /locus_tag="SF2592" /note="Code: ER; COG: COG1063" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_708383.1" /db_xref="GeneID:1025642" /translation="MKINRIVNEGFMKTMLAAYLLGNSTVDLREVAVPTPGINQVLIK MKSSGICGSDVHYIYHQHCATAAAPDKPLYQGFINGHEPCGQIVAMGQGCRHFKEGDR VLVYHISGCGFCPNCRRGFPISCTGKGKAAYGWQRDGGHAEYLLAEEKDLILLPDALS YEDGAFISCGVGTAYEGILRGEVSGSDNVLVVGLGPVGMMAMMLAKGRGAKRIIGVDM LPERLAMAKQLGGMDHGYLATTEGLPQIIAELTHGGADVALDCSGNAAGRLLALQSTA DWGRVVYIGETGKVEFEVSADLMHHQRRIIGSWVTSLFHMEKCAHDLTDWKLWPRNAI THRFSLEQAGDAYVLMASGKCGKVVINFPD" misc_feature complement(2659581..2660624) /gene="yphC" /locus_tag="SF2592" /note="L-threonine dehydrogenase (TDH)-like; Region: THR_DH_like; cd08239" /db_xref="CDD:176201" misc_feature complement(order(2659737..2659745,2659812..2659817, 2659875..2659877,2659881..2659886,2659953..2659955, 2660001..2660003,2660013..2660018,2660073..2660090, 2660148..2660150,2660160..2660162,2660499..2660501, 2660508..2660516)) /gene="yphC" /locus_tag="SF2592" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176201" misc_feature complement(order(2660160..2660162,2660424..2660426, 2660508..2660510,2660514..2660516)) /gene="yphC" /locus_tag="SF2592" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176201" gene complement(2660699..2661697) /gene="yphD" /locus_tag="SF2593" /db_xref="GeneID:1025648" CDS complement(2660699..2661697) /gene="yphD" /locus_tag="SF2593" /note="Code: G; COG: COG1172" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_708384.1" /db_xref="GeneID:1025648" /translation="MYASSLPLPQGKSVSLKQFVSRHINEIGLLVVIAILYLVFSLNA PGFISLNNQMNVLRDAATIGIAAWAMTLIIISGEIDVSVGPMVAFVSVCLAFLLQFEV PLAIACLLVLLLGALMGTLAGVLRGVFNVPSFVATLGLWSALRGMGLFMTNALPVPID ENEVLDWLGGQFLGVPVSALIMMVLFALFVFISRKTAFGRSVFAVGGNATAAQLCGIN VRRVRILIFTLSGLLAAVTGILLAARLGSGNAGAANGLEFDVIAAVVVGGTALSGGRG SLFGTLLGVLVITLIGNGLVLLGINSFFQQVVRGVIIVVAVLANILLTQRSSKAKR" misc_feature complement(2660711..2661661) /gene="yphD" /locus_tag="SF2593" /note="Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism]; Region: AraH; COG1172" /db_xref="CDD:440785" gene complement(2661722..2663233) /gene="yphE" /locus_tag="SF2594" /db_xref="GeneID:1027583" CDS complement(2661722..2663233) /gene="yphE" /locus_tag="SF2594" /note="Code: G; COG: COG1129" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_708385.1" /db_xref="GeneID:1027583" /translation="MFTATEAVPVAKVVAGNKRYPGVVALDNVNFTLNKGEVRALLGK NGAGKSTLIRMLTGSERPDSGDIWIGETRLEGDEATLTRRAAELGVRAVYQELSLVEG LTVAENLCLGQWPRRNGMIDYLQMAQDAQRCLQALGVDVSPEQLVSTLSPAQKQLVEI ARVMKGEPRVVILDEPTSSLASAEVELVISAVKKMSALGVAVIYVSHRMEEIRRIASY ATVMRDGQVAGDVMLENTSTHHIVSLMLGRDHVDIAPVAPQEIVDQAVLEVRALRHKP KLEDISFTLRRGEVLGIAGLLGAGRSELLKAIVGLETYEQGEIVINGEKIMRPDYGDM LKRGIGYTPENRKEAGIIPWLGVDENTVLTNRQKISTNGVLQWSTIRRLTEEVMQRMT VKAASSETPIGTLSGGNQQKVVIGRWVYAASQILLLDEPTRGVDIEAKQQIYRIVREL AAEGKSVVFISSEVEELPLVCDRILLLQHGTFSQEFHSPVNVDELMSAILSVH" misc_feature complement(2661725..2663182) /gene="yphE" /locus_tag="SF2594" /note="ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129" /db_xref="CDD:440745" gene complement(2663256..2664238) /gene="yphF" /locus_tag="SF2595" /pseudo /db_xref="GeneID:1025654" misc_feature complement(2663256..2664238) /gene="yphF" /locus_tag="SF2595" /note="Similar to Escherichia coli K12 LACI-type transcriptional regulator gi: 1788898 (328 aa). BLAST with identity of 97% in 327 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2664335..2667616) /locus_tag="SF2596" /pseudogene="unknown" /db_xref="GeneID:1027586" gene 2667734..2668927 /gene="yphH" /locus_tag="SF2597" /db_xref="GeneID:1025639" CDS 2667734..2668927 /gene="yphH" /locus_tag="SF2597" /note="Code: K; COG: COG1940" /codon_start=1 /transl_table=11 /product="NagC-like transcriptional regulator" /protein_id="NP_708387.2" /db_xref="GeneID:1025639" /translation="MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAV SNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACL SPKGEFEYLQIDVPTPQALLSEIEKCWHRHRKLWPDRTINLALAIHGQVDPVTGVSQT MPQAPWTTPVEVKYLLEEKLGIRVLVDNDCVMLALAEKWQNNSQERDFCVINVDYGIG SSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGSLETVASLSALKKQARVWLK SQPVNTQLEPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL YGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA QLRQI" misc_feature 2667974..2668909 /gene="yphH" /locus_tag="SF2597" /note="ATPase-like domain of Escherichia coli protein YphH and similar proteins; Region: ASKHA_ATPase_ROK_YphH-like; cd24072" /db_xref="CDD:466922" gene complement(2669125..2670378) /gene="glyA" /locus_tag="SF2598" /db_xref="GeneID:1025638" CDS complement(2669125..2670378) /gene="glyA" /locus_tag="SF2598" /note="Code: E; COG: COG0112" /codon_start=1 /transl_table=11 /product="serine hydroxymethyltransferase" /protein_id="NP_708388.2" /db_xref="GeneID:1025638" /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM QAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQAN FAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEK QAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVP HAHVVTTTTHKTLAGPRGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVAL KEAMEPEFKTYQQQVAKNAKAMVEVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEAD AALGRANITVNKNSVPNDPKSPFVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS INDEAVIERIKGKVLDICARYPVYA" misc_feature complement(2669128..2670363) /gene="glyA" /locus_tag="SF2598" /note="serine hydroxymethyltransferase; Reviewed; Region: glyA; PRK00011" /db_xref="CDD:234571" misc_feature complement(order(2669530..2669532,2669584..2669586, 2669962..2669967,2670070..2670072,2670091..2670093, 2670136..2670138,2670160..2670165,2670217..2670219, 2670271..2670273,2670286..2670288,2670313..2670318, 2670337..2670339,2670343..2670345)) /gene="glyA" /locus_tag="SF2598" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99733" misc_feature complement(order(2669290..2669292,2669674..2669676, 2669692..2669697,2669770..2669772,2669779..2669781, 2669854..2669856,2670001..2670003,2670082..2670087, 2670184..2670186,2670214..2670216,2670274..2670276)) /gene="glyA" /locus_tag="SF2598" /note="glycine-pyridoxal phosphate binding site [chemical binding]; other site" /db_xref="CDD:99733" misc_feature complement(order(2669290..2669292,2669692..2669694, 2670001..2670003,2670274..2670276)) /gene="glyA" /locus_tag="SF2598" /note="active site" /db_xref="CDD:99733" misc_feature complement(order(2669338..2669340,2669608..2669610, 2669998..2670000,2670004..2670006,2670016..2670018, 2670187..2670189,2670208..2670210)) /gene="glyA" /locus_tag="SF2598" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:99733" gene 2670705..2671895 /gene="hmpA" /locus_tag="SF2599" /db_xref="GeneID:1026953" CDS 2670705..2671895 /gene="hmpA" /locus_tag="SF2599" /note="Code: C; COG: COG1018" /codon_start=1 /transl_table=11 /product="bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2" /protein_id="NP_708389.1" /db_xref="GeneID:1026953" /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGEHL LATLDEMFSPGQEVLDAWGKAYGVLANVFINREAEIYNENASKAGGWEGTRDFRIVAK TPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPDGKGYR IAVKREEGGQVSNWLHNHANVGDVVKLVAPAGDFFMAVADDTPVTLISTGVGQTPMLA MLDTLAKAGHTAQVNWFHAAENGEVHAFADEVKELGQSLPRFTAHTWYRQPSEADRAK GQFDSEGLMDLSKLEGAFSDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECFGP HKVL" misc_feature 2670705..2671892 /gene="hmpA" /locus_tag="SF2599" /note="NO-inducible flavohemoprotein; Region: PRK13289" /db_xref="CDD:237337" gene complement(2671940..2672278) /gene="glnB" /locus_tag="SF2600" /db_xref="GeneID:1025665" CDS complement(2671940..2672278) /gene="glnB" /locus_tag="SF2600" /note="Code: E; COG: COG0347" /codon_start=1 /transl_table=11 /product="nitrogen regulatory protein P-II 1" /protein_id="NP_708390.1" /db_xref="GeneID:1025665" /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI RTGEEDDAAI" misc_feature complement(2671943..2672278) /gene="glnB" /locus_tag="SF2600" /note="Nitrogen regulatory protein PII [Signal transduction mechanisms, Amino acid transport and metabolism]; Region: GlnK; COG0347" /db_xref="CDD:440116" gene complement(2672339..2673673) /gene="yfhA" /locus_tag="SF2601" /db_xref="GeneID:1025655" CDS complement(2672339..2673673) /gene="yfhA" /locus_tag="SF2601" /note="Code: T; COG: COG2204" /codon_start=1 /transl_table=11 /product="response regulator GlrR" /protein_id="NP_708391.2" /db_xref="GeneID:1025655" /translation="MSHKPAHLLLVDDDPGLLKLLGLRLTSEGYSVVTAESGAEGLRV LNREKVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFS FLTKPVDKDALYQAIDDALEQSAPATDERWREAIVTRSPLMLRLLEQARLVAQSDVSV LINGQSGTGKEIFAQAIHNASPRNSKPFIAINCGALPEQLLESELFGHARGAFTGAVS NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDINVRIISAT HRDLSKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVR AFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTFV EARNHFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE" misc_feature complement(2672342..2673673) /gene="yfhA" /locus_tag="SF2601" /note="response regulator GlrR; Provisional; Region: PRK15115" /db_xref="CDD:185070" gene complement(2673663..2674376) /gene="yfhG" /locus_tag="SF2602" /db_xref="GeneID:1023594" CDS complement(2673663..2674376) /gene="yfhG" /locus_tag="SF2602" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708392.2" /db_xref="GeneID:1023594" /translation="MRHIFQRLLPRRLWLAGLPCLALLGCVQNHNKPAIDTPAEEKIP VYQLADYLSTECSDIWALQGKSTETNPLYWLRAMDCADRLMPAQSRQQARQYDDGSWQ NTFKQGILLADAKITPYERRQLVARIEALSTEIPAQVRPLYQLWRDGQALQLQLAEER QRYSKLQQSSDSELDTLRQQHHVLQQQLELTTRKLENLTDIERQLSTRKPAGNFSPDT PHESEKPAPSTHEVTPDEP" misc_feature complement(2673666..2674376) /gene="yfhG" /locus_tag="SF2602" /note="two-component system QseEF-associated lipoprotein QseG; Region: PRK10722" /db_xref="CDD:236745" gene complement(2674541..2676031) /gene="yfhK" /locus_tag="SF2603" /db_xref="GeneID:1025662" CDS complement(2674541..2676031) /gene="yfhK" /locus_tag="SF2603" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="2-component sensor protein" /protein_id="NP_708393.1" /db_xref="GeneID:1025662" /translation="MLYLNFPSVSIRLFASDESNTLKRWPVFPRSLRQLVMLAFLLIL LPLLVLAWQAWQSLNALSDQAALVNRTTLIDARRSEAMTNAALEMERSYRQYCVLDDP TLAKVYQSQRKRYSEMLDAHAGVLPDDKLYQALRQDLNNLAQLQCNNSGPDAAAAARL EAFASANTEMVQATRTVVFSRGQQLQREIAERGQYFGWQSLVLFLVSLVMVLLFTRMI IGPVKNIERMINRLGEGRSLGNSVSFCGPSELRSVGQRILWLSERLSWLESQRHQFLR HLSHELKTPLASMREGTELLADQVVGPLTPEQKEVVSILDSSSCNLQKLIEQLLDYNR KQADSAVELENVELAPLVETVVSAHSLPARAKMMHTDVDLKATACLAEPMLLMSVLDN LYSNAVHYGAESGNICLRSSLHGARVYIDVINTGTPIPQEERAMIFEPFFQGSHQRKG AVKGSGLGLSIARDCIRRMQGELYLVDESGQDVCFRIELPSSKNTK" misc_feature complement(2674562..2675536) /gene="yfhK" /locus_tag="SF2603" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:440407" gene complement(2676526..2680413) /gene="purL" /locus_tag="SF2604" /db_xref="GeneID:1025658" CDS complement(2676526..2680413) /gene="purL" /locus_tag="SF2604" /note="Code: F; COG: COG0046" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthase" /protein_id="NP_708394.2" /db_xref="GeneID:1025658" /translation="MMEILRGSPALSAFRINKLLARFQAARLPVHNIYAEYVHFADLN APLNDDEHAQLERLLKYGPALASHAPQGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ VNRLERGVAYYIEAGTLTNEQWQQVTAELHDRMMETVFFDLDDAEQLFAHHQPTPVTS VDLLGQGRQALIDANLRLGLALAEDEIDYLQDAFTKLGRNPNDIELYMFAQANSEHCR HKIFNADWIIDGEQQPKSLFRMIKNTFETTPDHVLSAYKDNAAVMEGSEVGRYFADHE TGRYNFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG FSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALNGYFRTY EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEINVGAKLVVLGGPAMNIGLGG GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL CKRERAPYAVIGEATEELHLSLHDRHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD ALVREGITIADAVKRVLHLPTVAEKTFLVTIGDRSVTGMVARDQMVGPWQVPVANCAV TTASLDSYYGEAMAIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW MAAAGHPGEDAGLYEAVKAVGEELCPALGLTIPVGKDSMSMKTRWQEGNEEREMTSPL SLVISAFARVEDVRHTITPQLCTEDNALLLIDLGKGNNALGATALAQVYRQLGDKPAD VRDVVQLKGFYDAIQALVAQRKLLAYHDRSDGGLLVTLAEMAFAGHCGIDADIASLGD DRLAALFNEELGAVIQVRAADREAVESVLAQHGLADCVHYVGQAVSGDRFVITANGQT VFSESRTTLRVWWAETTWQMQRLRDNPECADQEHQAKSNDADPGLNVKLSFDINEDVA APYIATGARPKVAVLREQGVNSHVEMAAAFQRGGFDAIDVHMSDLLTGRTGLEDFHAL VACGGFSYGDVLGAGEGWAKSILFNDRVRDEFATFFHRPQTLALGVCNGCQMMSNLRE LIPGSELWPRFVRNTSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR DAAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTESGRVTIMMPHPE RVFRTVSNSWHPENWGEDGPWMRIFRNARKQLG" misc_feature complement(2676529..2680410) /gene="purL" /locus_tag="SF2604" /note="phosphoribosylformylglycinamidine synthase; Provisional; Region: PRK05297" /db_xref="CDD:235394" gene 2680810..2682228 /gene="yfhD" /locus_tag="SF2605" /db_xref="GeneID:1025640" CDS 2680810..2682228 /gene="yfhD" /locus_tag="SF2605" /codon_start=1 /transl_table=11 /product="membrane-bound lytic transglycosylase F" /protein_id="NP_708395.2" /db_xref="GeneID:1025640" /translation="MSTIHTPLTYNEINGKPFGLDYELAKQFADYLGVKLKVTVRQNI SQLFDDLDNGNADLLAAGLVYNSERVKNYQPGPTYYSVSQQLVYKVGQYRPRTLGNLT AEQLTVAPGHVVVNDLQTLKETKFPELSWKVDDKKGSAELMEDVIEGKLDYTIADSVA ISLFQRVHPELAVALDITDEQPVTWFSPLDGDNTLSAALLDFFNEMNEDGTLARIEEK YLGHGDDFDYVDTRTFLRAVDAVLPQLKPLFEKYAEEIDWRLLAAIAYQESHWDAQAT SPTGVRGMMMLTKNTAQSLGITDRTDAEQSISGGVRYLQDMMSKVPESVPENERIWFA LAAYNMGYAHMLDARALTAKTKGNPDSWADVKQRLPLLSQKPYYSKLTYGYARGHEAY AYVENIRKYQISLVGYLQEKEKQATEAAMQLAQDYPAVSPTELGKEKFPFLSFLSQSS SNYLTHSPSLLFSRKGSEEKQN" misc_feature 2680810..2682120 /gene="yfhD" /locus_tag="SF2605" /note="membrane-bound lytic murein transglycosylase MltF; Region: PRK10859" /db_xref="CDD:236778" gene complement(2682225..2682761) /gene="yfhC" /locus_tag="SF2606" /db_xref="GeneID:1026570" CDS complement(2682225..2682761) /gene="yfhC" /locus_tag="SF2606" /note="Code: FJ; COG: COG0590" /codon_start=1 /transl_table=11 /product="tRNA-specific adenosine deaminase" /protein_id="NP_708396.1" /db_xref="GeneID:1026570" /translation="MRRAFITGVFFLSEVEFSHEYWMRHALTLAKRAWDEREVPVGAV LVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPCVMCA GAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFF RMRRQEIKAQKKAQSSTD" misc_feature complement(2682228..2682743) /gene="yfhC" /locus_tag="SF2606" /note="tRNA-specific adenosine deaminase; Provisional; Region: PRK10860" /db_xref="CDD:182786" misc_feature complement(order(2682459..2682461,2682468..2682470, 2682552..2682560,2682591..2682593,2682639..2682641)) /gene="yfhC" /locus_tag="SF2606" /note="nucleoside/Zn binding site [active]" /db_xref="CDD:238612" misc_feature complement(order(2682438..2682443,2682450..2682455, 2682462..2682467,2682537..2682539,2682549..2682551, 2682564..2682566)) /gene="yfhC" /locus_tag="SF2606" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238612" misc_feature complement(order(2682459..2682461,2682468..2682473, 2682552..2682560)) /gene="yfhC" /locus_tag="SF2606" /note="catalytic motif [active]" /db_xref="CDD:238612" gene complement(2682786..2683358) /gene="yfhB" /locus_tag="SF2607" /db_xref="GeneID:1025660" CDS complement(2682786..2683358) /gene="yfhB" /locus_tag="SF2607" /note="Code: E; COG: COG0560" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708397.4" /db_xref="GeneID:1025660" /translation="MFGSFLRYLLRRQPLNALLVLPLLPIIAIALLIKGRAARWPMSL LLWGCTFGHSEARLQTLQADFVRWFRDNVTAFPLVQERLTTYLLSSDADIWLITGSPQ PLVEAVYFDTPWLPRVNLIASQIQRGYGGWVLTMRCLGHEKVAQLERKIGTPLRLYSG YSDSNQDNPLLYFCQHRWRVTPRGELQQLE" misc_feature complement(2682789..2683358) /gene="yfhB" /locus_tag="SF2607" /note="The haloacid dehalogenase (HAD) superfamily includes carbon and phosphorus hydrolases such as 2-haloalkonoate dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, among others. These...; Region: Haloacid Dehalogenase-like Hydrolases; cl21460" /db_xref="CDD:473868" gene 2683558..2684478 /gene="yfhH" /locus_tag="SF2608" /db_xref="GeneID:1025651" CDS 2683558..2684478 /gene="yfhH" /locus_tag="SF2608" /note="Code: K; COG: COG1737" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708398.3" /db_xref="GeneID:1025651" /translation="MEYKIHSRVSHIACCRHYFIARKDMNGLLRIRQRYQGLAQSDKK LADYLLLQPDTARHLSSQQLANEAGVSQSSVVKFAQKLGYKGFPALKLALSEALASQP ESPSVPIHNQIRGDDPLRLVGEKLIKENTAAMYATLNVNSEEKLHECVTMLRSARRII LTGIGASGLVAQNFAWKLMKIGFNAAALRDMHALLATVQASSPDDLLLAISYTGVRRE LNLAADEMLRVGGKVLAITGFTPNALQQRASHCLYTIAEEQATNSASISACHAQGMLT DLLFIALIQQDLELAPERIRHSEALVKKLV" misc_feature 2683642..2684475 /gene="yfhH" /locus_tag="SF2608" /note="MurR/RpiR family transcriptional regulator; Region: PRK11557" /db_xref="CDD:183195" gene complement(2684931..2685371) /locus_tag="SF2609" /db_xref="GeneID:1025657" CDS complement(2684931..2685371) /locus_tag="SF2609" /note="Code: L; COG: COG1961" /codon_start=1 /transl_table=11 /product="DNA-invertase" /protein_id="NP_708399.2" /db_xref="GeneID:1025657" /translation="MLIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPG LKKLLKTLSAGDTLVVWKLDRLGRSMRHLVVLVEALRERGINFRSLTDSIDTSTPMGR FFFHVMGALAEMERELIVERTKAGLEAARAQGRIGGRRPKLSPE" misc_feature complement(2684994..2685368) /locus_tag="SF2609" /note="Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768" /db_xref="CDD:239737" misc_feature complement(order(2685168..2685170,2685177..2685182, 2685345..2685347,2685351..2685353)) /locus_tag="SF2609" /note="catalytic residues [active]" /db_xref="CDD:239737" misc_feature complement(2685345..2685347) /locus_tag="SF2609" /note="catalytic nucleophile [active]" /db_xref="CDD:239737" misc_feature complement(order(2685027..2685029,2685039..2685044, 2685048..2685053,2685183..2685185)) /locus_tag="SF2609" /note="Presynaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature complement(order(2685021..2685023,2685030..2685032, 2685039..2685044,2685051..2685056,2685063..2685065, 2685147..2685152,2685165..2685167)) /locus_tag="SF2609" /note="Synaptic Antiparallel dimer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature complement(order(2685006..2685008,2685018..2685020, 2685027..2685029,2685039..2685041,2685048..2685053, 2685060..2685065,2685090..2685098)) /locus_tag="SF2609" /note="Synaptic Flat tetramer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature complement(order(2685006..2685008,2685018..2685020, 2685027..2685029,2685039..2685041,2685048..2685050, 2685096..2685098)) /locus_tag="SF2609" /note="Synaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature complement(order(2685003..2685008,2685024..2685026)) /locus_tag="SF2609" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:239737" misc_feature 2685386..2696907 /note="ipaH island V" gene 2685872..2687698 /gene="ipaH_7" /locus_tag="SF2610" /db_xref="GeneID:1025652" CDS 2685872..2687698 /gene="ipaH_7" /locus_tag="SF2610" /codon_start=1 /transl_table=11 /product="invasion plasmid antigen" /protein_id="NP_708400.2" /db_xref="GeneID:1025652" /translation="MREINMLRNISSCLFPHISTITSPNHYLSEWDDWEKQGLPEEQR TEAVRRLRACLTSKGHKLDLRALALSSLPVLPACIKKLDVSCNKLTILTDLPENIKEL IARDNFLTHISALPHYLITLDVSENQLENLPLLPDTIKSLSAEYNRLSTLPSLPLNLK KLEVRNNELQTLPSLPSNLKILKVAHNHLTELPPLPRRLQLLFAYSNRLSNLPNIQEN IIMRRFFYFENNQITTIPTNLFRLDPHITIEIANNPLSDQTLLFLIQQTSVPNFNGPQ FRISLSDQNRLFLRQMLPQNLHSRHIRVITEGGQNFQIPPLPETVAAWFPEADRREVS TQWTSFSTEENSRAFSAFLDRLSDTVSARNTSGFREQVAAWLEKLSASAELRQQSFAV AADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGALLSLGREMFRLEILEDIAR DKVRTLHFVDEIEVYLAFQTMLAEKLQLSTAVKEMRFYGVSGVTANDLRTAEAMVRSR EENEFTDWFSLWGPWHAVLKRTEADRWALAEEQKYEMLENEYPQRVADRLKASGLSGD ADAEREAGAQVMRETEQQIYRQLTDEVLALRLPENGSQLHHS" misc_feature 2685881..2686018 /gene="ipaH_7" /locus_tag="SF2610" /note="Type III secretion system leucine rich repeat protein; Region: TTSSLRR; pfam12468" /db_xref="CDD:432576" misc_feature 2685962..2687653 /gene="ipaH_7" /locus_tag="SF2610" /note="type III secretion system effector E3 ubiquitin transferase SlrP; Region: PRK15370" /db_xref="CDD:185268" misc_feature 2686106..2686165 /gene="ipaH_7" /locus_tag="SF2610" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2686226..2686285 /gene="ipaH_7" /locus_tag="SF2610" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2686286..2686345 /gene="ipaH_7" /locus_tag="SF2610" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2686346..2686405 /gene="ipaH_7" /locus_tag="SF2610" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 2686514..2686606 /gene="ipaH_7" /locus_tag="SF2610" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" gene complement(2687878..2688501) /locus_tag="SF2611" /db_xref="GeneID:1026930" CDS complement(2687878..2688501) /locus_tag="SF2611" /codon_start=1 /transl_table=11 /product="prophage CP-933K tail protein" /protein_id="NP_708401.1" /db_xref="GeneID:1026930" /translation="MHMSLAQCPGFLFAHREECTVEIKKIINPRYTESGAVDCDVFFD DRDQAVPYTATADDVAPTGQQIWQELQSGKWGEIAPFTVTPEMLEAAREARRQEIEAW RTEQEAKPFTFEWNGRTWNADASSVARLSPVVMLAKSVAAQTHMVWSDADNQQVKLSM PELEELAAAMVQAQVDRNDEIYRRQREMKEELSSLDDLASIRAFDVK" misc_feature complement(2687893..2688216) /locus_tag="SF2611" /note="Domain of unknown function (DUF4376); Region: DUF4376; pfam14301" /db_xref="CDD:433852" gene complement(2688580..2689716) /locus_tag="SF2612" /pseudogene="unknown" /db_xref="GeneID:1026944" gene complement(2689740..2690228) /locus_tag="SF2613" /db_xref="GeneID:1025659" CDS complement(2689740..2690228) /locus_tag="SF2613" /codon_start=1 /transl_table=11 /product="tail fiber assembly protein" /protein_id="NP_708403.1" /db_xref="GeneID:1025659" /translation="MTKRYSVTWLFSEDGKNWYEELKNFASDTIKIAYTGDGRVVWVG KDVTGIEPRNASVIEVPDITANRRITAPGYWFYRNDEFVFDYRLKAEDERDALLAQVS ARTGEWEEDLLLGLISDEDKEKLKACRIYAKSLQAMDFSTITDKSSYNAIEWPASPEG SS" misc_feature complement(2689752..2690171) /locus_tag="SF2613" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; pfam02413" /db_xref="CDD:426761" gene complement(2690288..2690806) /locus_tag="SF2614" /db_xref="GeneID:1026931" CDS complement(2690288..2690806) /locus_tag="SF2614" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_708404.1" /db_xref="GeneID:1026931" /translation="MSGDSGGQSIRFQNGVAIAFKNIQAGTARKFTLSSANNSTKNAA FYLWGNPSRPVVAELGDDSGWHFFSQRNPDNSIVFTVNGQVIPLNYGNFDARYKYRTE GVQDVRYGHEMYYSPGSNTVSWRFCAPSGHGLSGMAISDTGRNSADNVDGVYYRPLQK LINGTWYNVASI" mobile_element 2690779..2692109 /mobile_element_type="insertion sequence:IS2" gene 2690825..2691235 /locus_tag="SF2615" /db_xref="GeneID:1026934" CDS 2690825..2691235 /locus_tag="SF2615" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_708405.3" /db_xref="GeneID:1026934" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 2690870..2691232 /locus_tag="SF2615" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 2691193..2692098 /locus_tag="SF2616" /db_xref="GeneID:1026938" CDS 2691193..2692098 /locus_tag="SF2616" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_708406.1" /db_xref="GeneID:1026938" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature 2691193..2692095 /locus_tag="SF2616" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(2691932..2693011) /locus_tag="SF2617" /db_xref="GeneID:1026955" CDS complement(2691932..2693011) /locus_tag="SF2617" /codon_start=1 /transl_table=11 /product="tail fiber protein" /protein_id="NP_708407.1" /db_xref="GeneID:1026955" /translation="MKASDKPRQLAVPFASTGDKNRIPDKATQQTRESGNAAYDSGFP PVTMTAVSAGGIPPHGKDFNGLMYDITAAIRFAQAGGLYTYNAGFAGAIGGYAKGAIL AGVATTAVWLNTTDDNLTDPEGSDSAGWVNLLEDPKRIFLRQKNNLSDLQNKGTARDN LQVYSKEQSDQRYVHREGDKITGELKIRGVNALRIFNEAFGLIFRRSEECLHLIPTSE GQGENGDIGPLRPFTINLRTGEISMSHKVSVGGGSQVNGALGIGVQNALGGNSIVLGD NDTGFKQNGDGILDVYANSQRVFRCGFAPIFPDICYHLTHYKPAAADIPVASDNPAHY ADAIRYNARTPLQGSLLPLTRLVWA" gene complement(2692998..2693603) /locus_tag="SF2618" /db_xref="GeneID:1026932" CDS complement(2692998..2693603) /locus_tag="SF2618" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_708408.1" /db_xref="GeneID:1026932" /translation="MQNVAATVLAQYAASPRLNALINSFNAALSPDSFISDFYGLIWN IDTAEKYGLDVWGKIVGVSRWLTVKDDFNYLGFSESRMDTPVMDDPCPFNQAPFYNGK SDTRTVDLSDAVYRRLILMKAMSNITDCSVPDINLMLRFMFGKKRRAYVLNNGGLRMS YVFESALSLAELAIIQSSGALPSPPGVYVSVVLKESRNEGQ" misc_feature complement(2693031..2693594) /locus_tag="SF2618" /note="Protein of unknown function (DUF2612); Region: DUF2612; pfam11041" /db_xref="CDD:431622" gene complement(2693605..2694072) /locus_tag="SF2619" /db_xref="GeneID:1026936" CDS complement(2693605..2694072) /locus_tag="SF2619" /codon_start=1 /transl_table=11 /product="bacteriophage protein" /protein_id="NP_708409.1" /db_xref="GeneID:1026936" /translation="MYGGSPADIAAAIWRKAPPGIDMNGNTTFTVADKEYDPPYPEYV ISWQTLKPVSLHVSVTLKKSDYLPSDITRQVQQSVLDAFNGTDGGLRARVASVVSAGR YYAGIYKTDPEHIDILGLTVSRDGSSWTTAVTFGIDEIPVLDVSDISVKLQEA" misc_feature complement(2693623..>2694072) /locus_tag="SF2619" /note="Uncharacterized phage protein gp47/JayE [Mobilome: prophages, transposons]; Region: JayE; COG3299" /db_xref="CDD:442528" mobile_element 2694303..2695566 /mobile_element_type="insertion sequence:IS600" gene 2694367..2694669 /locus_tag="SF2620" /db_xref="GeneID:1025668" CDS 2694367..2694669 /locus_tag="SF2620" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_708410.1" /db_xref="GeneID:1025668" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 2694367..2694639 /locus_tag="SF2620" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2694810..2695523 /locus_tag="SF2621" /db_xref="GeneID:1026933" CDS 2694810..2695523 /locus_tag="SF2621" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 integrase core domain-containing protein" /protein_id="NP_708411.1" /db_xref="GeneID:1026933" /translation="MAHIRTRETYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQ KRKFRATTNPNHNLPVAPNLLNHTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYT CEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGL KTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHS RLGNISPAAFREKHHQMAA" misc_feature <2694810..2695496 /locus_tag="SF2621" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(2695564..2696663) /locus_tag="SF2622" /pseudogene="unknown" /db_xref="GeneID:1025649" gene 2696878..2697138 /gene="yfhL" /locus_tag="SF2624" /db_xref="GeneID:1025650" CDS 2696878..2697138 /gene="yfhL" /locus_tag="SF2624" /note="Code: C; COG: COG1145" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708414.1" /db_xref="GeneID:1025650" /translation="MSLLITKRCINCDMCEPECPNEAISMGDHIYEINSDKCTECVGH YETPTCQKVCPIPNTIVKDPAHVETEEQLWDKFVLMHHADKI" misc_feature 2696878..2697117 /gene="yfhL" /locus_tag="SF2624" /note="YfhL family 4Fe-4S dicluster ferredoxin; Region: di_4Fe-4S_YfhL; NF033683" /db_xref="CDD:468141" gene complement(2697832..2698212) /gene="acpS" /locus_tag="SF2625" /db_xref="GeneID:1026788" CDS complement(2697832..2698212) /gene="acpS" /locus_tag="SF2625" /note="Code: I; COG: COG0736" /codon_start=1 /transl_table=11 /product="4'-phosphopantetheinyl transferase" /protein_id="NP_708415.1" /db_xref="GeneID:1026788" /translation="MAILGLGTDIVEIARIEAVIARSGERLARRVLSDNEWAIWKTHH QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALKLAEKL GVVNMHVTLADERHYACATVIIES" misc_feature complement(2697835..2698209) /gene="acpS" /locus_tag="SF2625" /note="4'-phosphopantetheinyl transferase; Provisional; Region: acpS; PRK00070" /db_xref="CDD:234610" gene complement(2698212..2698943) /gene="pdxJ" /locus_tag="SF2626" /db_xref="GeneID:1026563" CDS complement(2698212..2698943) /gene="pdxJ" /locus_tag="SF2626" /note="Code: H; COG: COG0854" /codon_start=1 /transl_table=11 /product="pyridoxine 5'-phosphate synthase" /protein_id="NP_708416.2" /db_xref="GeneID:1026563" /translation="MAELLLGVNIDHIATLRNARGTAYPDPVQAAFIAEQAGADGITV HLREDRRHITDRDVRILRQTLDTRMNLEMAVTEEMLAIAVETKPHFCCLVPEKRQEVT TEGGLDVAGQREKIRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTGCYA DAKTDAEQAQELVRIAKAATFAASLGLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAI IGRAVMTGLKDAVAEMKRLMLEARG" misc_feature complement(2698221..2698934) /gene="pdxJ" /locus_tag="SF2626" /note="pyridoxine 5'-phosphate synthase; Provisional; Region: PRK05265" /db_xref="CDD:235380" misc_feature complement(order(2698296..2698301,2698362..2698367, 2698485..2698487,2698545..2698547,2698626..2698628, 2698635..2698640,2698728..2698730,2698788..2698793, 2698803..2698805,2698809..2698811,2698884..2698886, 2698908..2698913,2698917..2698919)) /gene="pdxJ" /locus_tag="SF2626" /note="active site" /db_xref="CDD:237977" misc_feature complement(order(2698305..2698307,2698311..2698316, 2698365..2698367,2698374..2698376,2698485..2698487, 2698491..2698493,2698545..2698547,2698551..2698553, 2698668..2698670,2698674..2698676,2698728..2698730, 2698734..2698736,2698740..2698742,2698815..2698817, 2698917..2698919)) /gene="pdxJ" /locus_tag="SF2626" /note="hydrophilic channel [active]" /db_xref="CDD:237977" misc_feature complement(order(2698461..2698466,2698884..2698886)) /gene="pdxJ" /locus_tag="SF2626" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:237977" misc_feature complement(order(2698365..2698367,2698485..2698487, 2698728..2698730,2698809..2698811)) /gene="pdxJ" /locus_tag="SF2626" /note="catalytic residues [active]" /db_xref="CDD:237977" misc_feature complement(2698626..2698658) /gene="pdxJ" /locus_tag="SF2626" /note="active site lid [active]" /db_xref="CDD:237977" gene complement(2698955..2699683) /gene="recO" /locus_tag="SF2627" /db_xref="GeneID:1025671" CDS complement(2698955..2699683) /gene="recO" /locus_tag="SF2627" /note="Code: L; COG: COG1381" /codon_start=1 /transl_table=11 /product="DNA repair protein RecO" /protein_id="NP_708417.1" /db_xref="GeneID:1025671" /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS TLKGALQPFTPLLLRFGGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY ETRFSELFFDYLHCIQSLAGDTGTPEPALRRFELALLGHLGYGVNFTHCAGSGEPVDG TMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLG GKPLKSRELFRQFMPKRTVKTHYE" misc_feature complement(2698991..2699683) /gene="recO" /locus_tag="SF2627" /note="Recombinational DNA repair protein RecO (RecF pathway) [Replication, recombination and repair]; Region: RecO; COG1381" /db_xref="CDD:440991" gene complement(2699695..2700600) /gene="era" /locus_tag="SF2628" /db_xref="GeneID:1025663" CDS complement(2699695..2700600) /gene="era" /locus_tag="SF2628" /note="Code: R; COG: COG1159" /codon_start=1 /transl_table=11 /product="GTPase Era" /protein_id="NP_708418.1" /db_xref="GeneID:1025663" /translation="MSIDKSYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR HRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT PDDEMVLNKLREGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL NVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI ERFVSNERGGCDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE LWVKVKSGWADDERALRSLGYVDDL" misc_feature complement(2699710..2700591) /gene="era" /locus_tag="SF2628" /note="GTPase Era; Reviewed; Region: era; PRK00089" /db_xref="CDD:234624" gene complement(2700597..2701277) /gene="rnc" /locus_tag="SF2629" /db_xref="GeneID:1023569" CDS complement(2700597..2701277) /gene="rnc" /locus_tag="SF2629" /note="Code: K; COG: COG0571" /codon_start=1 /transl_table=11 /product="ribonuclease III" /protein_id="NP_708419.1" /db_xref="GeneID:1023569" /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG DSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELK SGGFRRESILADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDEISPGDKQKDPKTRL QEYLQGRHLPLPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ ALKKLELE" misc_feature complement(2700648..2701262) /gene="rnc" /locus_tag="SF2629" /note="dsRNA-specific ribonuclease [Transcription]; Region: Rnc; COG0571" /db_xref="CDD:440336" gene complement(2701549..2702523) /gene="lepB" /locus_tag="SF2630" /db_xref="GeneID:1026728" CDS complement(2701549..2702523) /gene="lepB" /locus_tag="SF2630" /note="Code: N; COG: COG0681" /codon_start=1 /transl_table=11 /product="signal peptidase I" /protein_id="NP_708420.1" /db_xref="GeneID:1026728" /translation="MANMFALILVIATLVTGILWCVDKFFFAPKRRERQAAAQAAAGD SLDKATLKKVAPKPGWLETGASVFPVLAIVLIVRSFIYEPFQIPSGSMMPTLLIGDFI LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKVTYDP VSKELTIQPGCSSGQACENALPVTYSNVEPSDFVQTFSRRNGGEATSGFFEVPKNETK ENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPGQQLATWIVPPGQYFMMGDNR DNSADSRYWGFVPEANLVGRATAIWMSFDKQEGEWPTGVRLSRIGGIH" misc_feature complement(2701552..2702523) /gene="lepB" /locus_tag="SF2630" /note="signal peptidase I; Region: PRK10861" /db_xref="CDD:182787" gene complement(2702539..2704338) /gene="lepA" /locus_tag="SF2631" /db_xref="GeneID:1026783" CDS complement(2702539..2704338) /gene="lepA" /locus_tag="SF2631" /note="Code: N; COG: COG0481" /codon_start=1 /transl_table=11 /product="GTP-binding protein LepA" /protein_id="NP_708421.1" /db_xref="GeneID:1026783" /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM DLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR CSAKTGVGVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTLR KGDKVKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTL ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYEAFRDALGKLSLNDASLFYEPESSSAL GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTSREVIYVDSPSKLPA VNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQTNMVYHGNQVALTYEIPMAEV VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDALALITHRDNSQNRG RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK" misc_feature complement(2702554..2704338) /gene="lepA" /locus_tag="SF2631" /note="Translation elongation factor EF-4, membrane-bound GTPase [Translation, ribosomal structure and biogenesis]; Region: LepA; COG0481" /db_xref="CDD:440249" gene complement(2704536..2705015) /gene="rseC" /locus_tag="SF2632" /db_xref="GeneID:1025653" CDS complement(2704536..2705015) /gene="rseC" /locus_tag="SF2632" /note="Code: T; COG: COG3086" /codon_start=1 /transl_table=11 /product="SoxR reducing system protein RseC" /protein_id="NP_708422.1" /db_xref="GeneID:1025653" /translation="MIKEWATVVSWQNGQALVSCDVKASCSSCASRAGCGSRVLNKLG PQTTHTIVVPCDEPLVPGQKVELGIAEGSLLSSALLVYMSPLVGLFLIASLFQLLFAS DVAALCGAVLGGIGGFLIARGYSRKFAARAEWQPIILSVALPPGLVRFETSSEDASQ" misc_feature complement(2704554..2705015) /gene="rseC" /locus_tag="SF2632" /note="SoxR-reducing system protein RseC; Region: PRK10862" /db_xref="CDD:182788" gene complement(2705012..2705968) /gene="rseB" /locus_tag="SF2633" /db_xref="GeneID:1027220" CDS complement(2705012..2705968) /gene="rseB" /locus_tag="SF2633" /note="Code: T; COG: COG3026" /codon_start=1 /transl_table=11 /product="anti-sigma E factor" /protein_id="NP_708423.1" /db_xref="GeneID:1027220" /translation="MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYE LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTL NGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ" misc_feature complement(2705015..2705968) /gene="rseB" /locus_tag="SF2633" /note="anti-sigma E factor; Provisional; Region: rseB; PRK09455" /db_xref="CDD:236525" misc_feature complement(order(2705426..2705428,2705621..2705623, 2705663..2705665,2705669..2705671,2705687..2705689, 2705693..2705695,2705720..2705722,2705726..2705728, 2705738..2705740,2705750..2705752,2705795..2705797, 2705801..2705815,2705822..2705824,2705852..2705854, 2705864..2705866)) /gene="rseB" /locus_tag="SF2633" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:319985" misc_feature complement(order(2705405..2705407,2705414..2705416, 2705420..2705422,2705426..2705428,2705453..2705455, 2705459..2705461,2705468..2705470,2705495..2705497, 2705501..2705503,2705531..2705533,2705687..2705689, 2705693..2705695,2705720..2705722,2705726..2705728, 2705744..2705746,2705750..2705752,2705789..2705791, 2705795..2705797,2705801..2705803,2705816..2705818, 2705822..2705824,2705828..2705830,2705834..2705836)) /gene="rseB" /locus_tag="SF2633" /note="hydrophobic core; other site" /db_xref="CDD:319985" misc_feature complement(order(2705663..2705665,2705678..2705680, 2705687..2705689,2705693..2705695,2705720..2705722, 2705726..2705728,2705744..2705746,2705810..2705812, 2705816..2705818)) /gene="rseB" /locus_tag="SF2633" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:319985" gene complement(2705968..2706618) /gene="rseA" /locus_tag="SF2634" /db_xref="GeneID:1026949" CDS complement(2705968..2706618) /gene="rseA" /locus_tag="SF2634" /note="Code: T; COG: COG3073" /codon_start=1 /transl_table=11 /product="anti-RNA polymerase sigma factor SigE" /protein_id="NP_708424.2" /db_xref="GeneID:1026949" /translation="MQKEQLSALMDGETLDSELLNELAHNPEMQKTWESYHLIRDSMR GDTPEVLHFDISSRVMAAIEEEPVRQSATLIPEAQPAPHQWQKMPFWQKVRPWAAQLT QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEATANN GQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ" misc_feature complement(2705971..2706618) /gene="rseA" /locus_tag="SF2634" /note="anti-sigma-E factor RseA; Region: PRK10863" /db_xref="CDD:182789" misc_feature complement(order(2706430..2706435,2706439..2706447, 2706451..2706459,2706487..2706522,2706526..2706528, 2706556..2706561,2706580..2706600,2706607..2706612)) /gene="rseA" /locus_tag="SF2634" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:319992" gene complement(2706651..2707226) /gene="rpoE" /locus_tag="SF2635" /db_xref="GeneID:1026945" CDS complement(2706651..2707226) /gene="rpoE" /locus_tag="SF2635" /note="Code: K; COG: COG1595" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor RpoE" /protein_id="NP_708425.2" /db_xref="GeneID:1026945" /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG DVPDVVQEAFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR" misc_feature complement(2706660..2707226) /gene="rpoE" /locus_tag="SF2635" /note="RNA polymerase sigma factor RpoE; Region: RpoE_Sigma70; TIGR02939" /db_xref="CDD:131985" gene 2707634..2709256 /gene="nadB" /locus_tag="SF2636" /pseudo /db_xref="GeneID:1025673" misc_feature 2707634..2709256 /gene="nadB" /locus_tag="SF2636" /note="'Similar to Escherichia coli K12 quinolinate synthetase, B protein gi: 1788928 (541 aa). BLAST with identity of 97% in 541 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene complement(2709241..2710098) /gene="yfiC" /locus_tag="SF2637" /db_xref="GeneID:1025677" CDS complement(2709241..2710098) /gene="yfiC" /locus_tag="SF2637" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708426.1" /db_xref="GeneID:1025677" /translation="MWGADYRRYGCNLHLFVWISLLGYCSHPVLSPFFLQGFIFMSQS TSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAGVKRCLDIGAGSGLLALML AQRTSDSVIIDAVELESEAAAQAQENINQSPWAERINVHTADIQQWITQQTVRFDLII SNPPYYQQGVECATPQREQARYTTTLDHPSLLTCAAECITEEGFFCVVLPEQIGNGFT ELALSMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFSDRLVIRGPDQNYSEAYTA LTQAFYLFM" misc_feature complement(2709256..2709954) /gene="yfiC" /locus_tag="SF2637" /note="tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; Region: TrmN6; COG4123" /db_xref="CDD:443299" gene 2710110..2711444 /gene="srmB" /locus_tag="SF2638" /db_xref="GeneID:1025667" CDS 2710110..2711444 /gene="srmB" /locus_tag="SF2638" /note="Code: LKJ; COG: COG0513" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase SrmB" /protein_id="NP_708427.1" /db_xref="GeneID:1025667" /translation="MTVTTFSELELDESLLEALQDKGFTRPTAIQAAAIPPALDGRDV LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD RMLDMGFAQDIEHIAGETRWRKQTLLFSATLEGDAIQDFAERLLEDPVEVSANPSTRE RKKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNC YLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLH RIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKARVIDELRPKTRAPSEKQTG KPSKKVLAKRAEKKKAKEKEKPRVKKRHRDTKNIGKRRKPSGTGVPPQTTEE" misc_feature 2710161..2711414 /gene="srmB" /locus_tag="SF2638" /note="ATP-dependent RNA helicase SrmB; Provisional; Region: PRK11192" /db_xref="CDD:236877" misc_feature order(2710176..2710181,2710185..2710193,2710200..2710202, 2710254..2710277) /gene="srmB" /locus_tag="SF2638" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350669" gene complement(2711479..2712405) /gene="yfiE" /locus_tag="SF2639" /db_xref="GeneID:1026790" CDS complement(2711479..2712405) /gene="yfiE" /locus_tag="SF2639" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_708428.1" /db_xref="GeneID:1026790" /translation="MFLYSKFDIFDRFGVMDLRRFITLKTVVEEGSFLRASQKLCCTQ STVTFHIQQLEQEFSVQLFEKIGRRMCLTREGKKLLPHIYELTRVMDTLREAAKKESD PDGELRVVSGETLLSYRMPQVLQRFRQRAPKVRLSLQALNCYVIRDALLNDEADVGVF YRVGNDDALNRRELGEQSLVLVASPQIADVDFTEPGRHNACSFIINEPQCVFRQIFES TLRQRRITVENTIELISIESIKRCVAANIGVSYLPHFAVEKEIESGELIELPFGEQSQ TITAMCAHYAGKAVSPAMHIFIQCVEECFVVA" misc_feature complement(2711491..2712360) /gene="yfiE" /locus_tag="SF2639" /note="DNA-binding transcriptional regulator, LysR family [Transcription]; Region: LysR; COG0583" /db_xref="CDD:440348" gene 2712463..2713050 /gene="yfiK" /locus_tag="SF2640" /db_xref="GeneID:1025669" CDS 2712463..2713050 /gene="yfiK" /locus_tag="SF2640" /note="Code: E; COG: COG1280" /codon_start=1 /transl_table=11 /product="cysteine/O-acetylserine exporter" /protein_id="NP_708429.1" /db_xref="GeneID:1025669" /translation="MTPILLSAFWTYTLITAMTPGPNNILALSSATSHGFRQSTRVLA GMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATSPTKEDGLQA KPISFWASFALQFVNVKIILYGVTALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCW ALAGHLFQRLFRQYGRQLNIVLALLLVYCAVRIFY" misc_feature 2712463..2713047 /gene="yfiK" /locus_tag="SF2640" /note="cysteine/O-acetylserine transporter; Region: PRK10323" /db_xref="CDD:182377" gene complement(2713106..2713489) /gene="yfiD" /locus_tag="SF2641" /db_xref="GeneID:1026902" CDS complement(2713106..2713489) /gene="yfiD" /locus_tag="SF2641" /note="Code: R; COG: COG3445" /codon_start=1 /transl_table=11 /product="autonomous glycyl radical cofactor GrcA" /protein_id="NP_708430.2" /db_xref="GeneID:1026902" /translation="MITGIQITKAANADLLNSFWLLDSEKGEARCIVAKAGYAEDEVV AVSKLGDIEYREVPVEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG YAVRFNSLTPEQQRDVIARTFTESL" misc_feature complement(2713109..2713489) /gene="yfiD" /locus_tag="SF2641" /note="autonomous glycyl radical cofactor GrcA; Provisional; Region: PRK11127" /db_xref="CDD:182983" gene 2713794..2714483 /locus_tag="SF2642" /pseudogene="unknown" /db_xref="GeneID:1027568" gene complement(2714531..2715568) /gene="yfiF" /locus_tag="SF2643" /db_xref="GeneID:1026792" CDS complement(2714531..2715568) /gene="yfiF" /locus_tag="SF2643" /note="Code: J; COG: COG0566" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="NP_708432.2" /db_xref="GeneID:1026792" /translation="MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPAKSRA DGGRRPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR QRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA ELTKASGTEHHGGVCFLIKKRNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSC AHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGHNIVNVLHDFRQAGYSVVNTS SEQGTPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV LLGEWWRQNKA" misc_feature complement(2714534..2715568) /gene="yfiF" /locus_tag="SF2643" /note="putative methyltransferase; Provisional; Region: PRK10864" /db_xref="CDD:236779" gene 2715775..2716194 /gene="trxC" /locus_tag="SF2644" /db_xref="GeneID:1026952" CDS 2715775..2716194 /gene="trxC" /locus_tag="SF2644" /note="Code: OC; COG: COG0526" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="NP_708433.1" /db_xref="GeneID:1026952" /translation="MNTVCTHCQAINRIPDDRIEDAAKCGRCGHDLFDGEVINATGET LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAQERSGKVRFVKVNTEAERELSSRF GIRSIPTIMIFKNGQVVDMLNGAVPKAPFDSWLNESL" misc_feature 2715775..2716191 /gene="trxC" /locus_tag="SF2644" /note="thioredoxin 2; Provisional; Region: PRK10996" /db_xref="CDD:182889" gene 2716239..2716961 /gene="yfiP" /locus_tag="SF2645" /db_xref="GeneID:1026929" CDS 2716239..2716961 /gene="yfiP" /locus_tag="SF2645" /note="Code: S; COG: COG3148" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708434.2" /db_xref="GeneID:1026929" /translation="MAFFRRSLMTENAVLQLRAERIARATRPFLARGNRVRRCQRCLL PEKLCLCSTITPAQAKSRFCLLMFDTEPMKPSNTGRLIADILPDTVAFQWSRTEPSQD LLDLVQNPDYQPMVVFPASYADEQREVIFTPPAGKPPLFIMLDGTWPEARKMFRKSPY LDNLPVISVDLSRLSAYRLREAQAAGQYCTAEVAIALLDMAGDTGAAAGLGEHFTRFK TRYLAGKTQHLGSITAEQLESV" misc_feature 2716329..2716922 /gene="yfiP" /locus_tag="SF2645" /note="tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain [Translation, ribosomal structure and biogenesis]; Region: TapT; COG3148" /db_xref="CDD:442382" gene 2716993..2719653 /gene="yfiQ" /locus_tag="SF2646" /db_xref="GeneID:1027489" CDS 2716993..2719653 /gene="yfiQ" /locus_tag="SF2646" /note="Code: C; COG: COG1042" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708435.1" /db_xref="GeneID:1027489" /translation="MSQRGLEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPV LPVTPAWKAVLGVLAWPDIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSA PASQHEDLRACALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVS NTILDWAQQREMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV SAARSASRNKPILVIKSGRSPAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSA VETLSHMRPLRGDRLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHV AVSNPLDLRDDASSEHYVKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKH HPRSKYVSLLTNWCGEHSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR ETPALPSNLTSNTAEAHLLLQQAIAEGATSLDTHEVQPILQAYGMNTLPTWIASDSTE AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTANEVQQAANAIFDRVKMAWPQA RVHGLLVQSMANRAGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEDQAVVALPPLNMN LARYLVIQGIKSKKIRARSALRPLDVAGLSQLLVQVSNLIVDCPEIQRLDIHPLLASG SEFTALDVTLDISPFEGDNESRLAVRPYPHQLEEWVELKNGERCLFRPILPEDEPQLQ QFISRVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRIDQTEEILGVTR AISDPDNIDAEFAVLVRSDLKGLGLGRRLMEKLITYTRNHGLQRLNGITMPNNRGMVA LARKLGFNVDIQLEEGIVGLTLNLARREES" misc_feature 2716993..2719092 /gene="yfiQ" /locus_tag="SF2646" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: PatZN; COG1042" /db_xref="CDD:440664" misc_feature 2719156..2719581 /gene="yfiQ" /locus_tag="SF2646" /note="Protein N-acetyltransferase, RimJ/RimL family [Translation, ribosomal structure and biogenesis, Posttranslational modification, protein turnover, chaperones]; Region: RimL; COG1670" /db_xref="CDD:441276" gene 2719767..2721122 /gene="pssA" /locus_tag="SF2647" /db_xref="GeneID:1026941" CDS 2719767..2721122 /gene="pssA" /locus_tag="SF2647" /note="Code: I; COG: COG1502" /codon_start=1 /transl_table=11 /product="phosphatidylserine synthase" /protein_id="NP_708436.2" /db_xref="GeneID:1026941" /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYAPADFRETLLEKI ASAKQRICIVALYLEQDDGGKGILNALYEAKRQRPELDVRVLVDWHRAQRGRIGAAAS NTNADWYCRMAQENPGVDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYL HQHDKYRYDRYHLIRNRKMSDIMFEWVTQNIMNGRGVNRLDDVNRPKSPEIKNDIRLF RQELRDAAYHFQGDADNDQLSVTPLVGLGKSSLLNKTIFHLMPCAEQKLTICTPYFNL PAILVRNIIQLLREGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSR LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLITGNNLNPRAWRLDLENAILIHD PQLELAPQREKELELIRERTTIVKHYRDLQSIADYPVKVRKLIRRLRRIRIDRLISRI L" misc_feature 2719767..2721059 /gene="pssA" /locus_tag="SF2647" /note="CDP-diacylglycerol--serine O-phosphatidyltransferase; Region: pssA; PRK09428" /db_xref="CDD:236510" gene 2721147..2721491 /gene="yfiM" /locus_tag="SF2648" /db_xref="GeneID:1025666" CDS 2721147..2721491 /gene="yfiM" /locus_tag="SF2648" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_708437.3" /db_xref="GeneID:1025666" /translation="MFFGGHVLRILFVCSLLLLSECSHMDNDSWSGQDKAQHFIASAI LSAAGNEYSQHQGMSRDRSAMFGLMFSVSLGASKELWDSRPEGSGWSWKDLAWDVAGA STGYTVWQLTRH" misc_feature 2721168..2721485 /gene="yfiM" /locus_tag="SF2648" /note="YfiM family lipoprotein; Region: PRK10759" /db_xref="CDD:182705" gene complement(2721488..2722786) /gene="kgtP" /locus_tag="SF2649" /db_xref="GeneID:1026888" CDS complement(2721488..2722786) /gene="kgtP" /locus_tag="SF2649" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="alpha-ketoglutarate transporter" /protein_id="NP_708438.2" /db_xref="GeneID:1026888" /translation="MAESTVTADSKLTSSDTRRRIWAIVGASSGNLVEWFDFYVYSFC SLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLLSVCM MCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGF YASFQYVTLIGGQLLALLVVVVLQHTMEDAALREWGWRIPFALGAVLAVVALWLRRQL DETSQQETRALKEAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGM HANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAAIFTVPILSALQNVS SPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANAIFGGSAEYV ALSLKSIGMETAFFWYVTLMAVVAFLVSLMLHRKGKGMRL" misc_feature complement(2721491..2722786) /gene="kgtP" /locus_tag="SF2649" /note="alpha-ketoglutarate transporter; Provisional; Region: PRK10406" /db_xref="CDD:182433" gene complement(2723110..2723228) /gene="rrfG" /locus_tag="SF4493" /db_xref="GeneID:1026859" rRNA complement(2723110..2723228) /gene="rrfG" /locus_tag="SF4493" /product="5S ribosomal RNA" /db_xref="GeneID:1026859" gene complement(2723323..2726226) /gene="rrlG" /locus_tag="SF4494" /db_xref="GeneID:1025661" rRNA complement(2723323..2726226) /gene="rrlG" /locus_tag="SF4494" /product="23S ribosomal RNA" /db_xref="GeneID:1025661" gene complement(2726410..2726485) /locus_tag="SF4495" /db_xref="GeneID:3161856" tRNA complement(2726410..2726485) /locus_tag="SF4495" /product="tRNA-Ala" /codon_recognized="GCA" /db_xref="GeneID:3161856" gene complement(2726528..2726604) /locus_tag="SF4496" /db_xref="GeneID:3161855" tRNA complement(2726528..2726604) /locus_tag="SF4496" /product="tRNA-Ile" /codon_recognized="AUC" /db_xref="GeneID:3161855" gene complement(2726673..2728213) /gene="rrsG" /locus_tag="SF4497" /db_xref="GeneID:1026935" rRNA complement(2726673..2728213) /gene="rrsG" /locus_tag="SF4497" /product="16S ribosomal RNA" /db_xref="GeneID:1026935" misc_feature 2727899..2728303 /note="potential protein location (hypothetical protein SF2650 [Shigella flexneri 2a str. 301]) that overlaps RNA (16S ribosomal RNA)" mobile_element 2728350..2728788 /note="partial" /mobile_element_type="insertion sequence:IS4" gene complement(2728825..2729562) /locus_tag="SF2652" /db_xref="GeneID:1025685" CDS complement(2728825..2729562) /locus_tag="SF2652" /note="Code: R; COG: COG0457" /codon_start=1 /transl_table=11 /product="outer membrane biogenesis protein BamD" /protein_id="NP_708441.1" /db_xref="GeneID:1025685" /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRIEGMLRDYPDTQATRDALPLM ENAYRQMQMNAQAEKVAKIIAANSSNT" misc_feature complement(2728834..2729562) /locus_tag="SF2652" /note="outer membrane protein assembly factor BamD; Region: PRK10866" /db_xref="CDD:182792" gene 2729697..2730677 /gene="rluD" /locus_tag="SF2653" /db_xref="GeneID:1027476" CDS 2729697..2730677 /gene="rluD" /locus_tag="SF2653" /note="Code: J; COG: COG0564" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridine synthase D" /protein_id="NP_708442.1" /db_xref="GeneID:1027476" /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILDQR VLVNGKVCDKPKEKVLGGEQVAINAEIEEEARFEPQDIPLDIVYEDEDIIVINKPRDL VVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE SLQRREITREYEAVAIGHMTAGGTVDEPISRHPTKRTHMAVHPMGKPAVTHYRIMEHF RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDR QALHATMLRLYHPISGIEMEWHAPIPQDMVELIEVMRADFEEHKDEVDWL" misc_feature 2729697..2730671 /gene="rluD" /locus_tag="SF2653" /note="23S rRNA pseudouridine(1911/1915/1917) synthase RluD; Region: rluD; PRK11180" /db_xref="CDD:183020" gene 2730674..2731405 /gene="yfiH" /locus_tag="SF2654" /db_xref="GeneID:1027284" CDS 2730674..2731405 /gene="yfiH" /locus_tag="SF2654" /note="Code: S; COG: COG1496" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708443.1" /db_xref="GeneID:1027284" /translation="MSKLIVPQWPLPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNP DHVEENRKRLFAAGNLPSKPVWLEQVHGKDVLKLTGEPYASKRADASYSNTPGTVCAV MTADCLPVLFCNRAGTEVAAVHAGWRGLCAGVLEETVSCFADKPENILAWLGPAIGPR AFEVGAEVREAFMAVDAKASAAFIQHGDKYLADIYQLARQRLANVGVEQIFGGDRCTY TENETFFSYRRDKTTGRMASFIWLI" misc_feature 2730674..2731402 /gene="yfiH" /locus_tag="SF2654" /note="polyphenol oxidase; Region: PRK10723" /db_xref="CDD:182677" gene 2731535..2734108 /gene="clpB" /locus_tag="SF2655" /db_xref="GeneID:1027322" CDS 2731535..2734108 /gene="clpB" /locus_tag="SF2655" /note="Code: O; COG: COG0542" /codon_start=1 /transl_table=11 /product="protein disaggregation chaperone" /protein_id="NP_708444.2" /db_xref="GeneID:1027322" /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG SVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDVQPSQDLVRVLNLCDKLAQKRG DNFISSELFVLAALESRGTLADILKATGATTANITQAIEQMRGGESVNDQGAEDQRQA LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ KVFVAEPSVQDTIAILRGVKERFELLHHVQITDPAIVAAATLSHRYIADRQLPDKAID LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSD KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE LEKQLEAATQLEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMMESEREKLLRMEQEL HHRVIGQNEAVDAVSNAIRRSRAGLADPNRPIGSFLFLGPTGVGKTELCKALANFMFD SDEAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKEL VLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLKRLYKRLEERGYEIHISDE ALKLLSENGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEVNEDRIVAV Q" misc_feature 2731535..2734105 /gene="clpB" /locus_tag="SF2655" /note="ATP-dependent chaperone ClpB; Region: PRK10865" /db_xref="CDD:182791" mobile_element complement(2734132..2735558) /mobile_element_type="insertion sequence:IS4" gene complement(2734145..2735491) /locus_tag="SF2656" /db_xref="GeneID:1027479" CDS complement(2734145..2735491) /locus_tag="SF2656" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_708445.1" /db_xref="GeneID:1027479" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFGAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWESDLGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQMSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature complement(2734403..2735401) /locus_tag="SF2656" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene 2735805..2736146 /gene="yfiA" /locus_tag="SF2657" /db_xref="GeneID:1027477" CDS 2735805..2736146 /gene="yfiA" /locus_tag="SF2657" /note="Code: J; COG: COG1544" /codon_start=1 /transl_table=11 /product="translation inhibitor protein RaiA" /protein_id="NP_708446.1" /db_xref="GeneID:1027477" /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE PQGFVADATINTPNGVLVASGKHEDMYTAINELINKLERQLNKLQHKGEARRAATSVK DANFVEEVEEE" misc_feature 2735805..2736143 /gene="yfiA" /locus_tag="SF2657" /note="ribosome-associated translation inhibitor RaiA; Region: PRK10324" /db_xref="CDD:182378" misc_feature order(2735814..2735816,2735820..2735822,2735826..2735828, 2735880..2735882,2735889..2735891,2735907..2735912, 2735922..2735924,2735934..2735936,2735961..2735963, 2735970..2735981,2735988..2735990,2735994..2735996, 2736003..2736005,2736009..2736011,2736018..2736020, 2736060..2736065,2736075..2736077) /gene="yfiA" /locus_tag="SF2657" /note="30S subunit binding site [active]" /db_xref="CDD:238308" gene 2736396..2737556 /gene="pheA" /locus_tag="SF2659" /db_xref="GeneID:1027480" CDS 2736396..2737556 /gene="pheA" /locus_tag="SF2659" /note="Code: E; COG: COG0077" /codon_start=1 /transl_table=11 /product="bifunctional chorismate mutase/prephenate dehydratase" /protein_id="NP_708448.1" /db_xref="GeneID:1027480" /translation="MTSENPLLALREKISALDEKLLALLAERRELAVEVGKAKLLSHR PVRDIDRERDLLERLITLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNKINPH SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFADIFNQVETGQADYAVVPIEN TSSGAINDVYDLLQHTSLSIVGEMTLTIDHCLLVSGTTDLSTINTVYSHPQPFQQCSK FLNRYPHWKIEYTESTSAAMEKVAQAKSPHVAALGSEAGGTLYGLQVLERIEANQRQN FTRFVVLARKAINVSDQVPAKTTLLMATGQQAGALVEALLVLRNHNLIMTRLESRPIH GNPWEEMFYLDIQANLESAEMQKALKELGEITRSMKVLGCYPSENVVPVDPT" misc_feature 2736396..2737553 /gene="pheA" /locus_tag="SF2659" /note="bifunctional chorismate mutase/prephenate dehydratase; Provisional; Region: pheA; PRK10622" /db_xref="CDD:182594" gene complement(2737599..2738720) /gene="tyrA" /locus_tag="SF2660" /db_xref="GeneID:1025679" CDS complement(2737599..2738720) /gene="tyrA" /locus_tag="SF2660" /note="Code: E; COG: COG0287" /codon_start=1 /transl_table=11 /product="bifunctional chorismate mutase/prephenate dehydrogenase" /protein_id="NP_708449.1" /db_xref="GeneID:1025679" /translation="MVAELTALRDQIDEVDKALLNLLAKRLELVAEVGKVKSRFGLPI YVPEREASMLASRRAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV IVGGGGQMGRLFEKMLTLSGYQVRILEQHDWDRAADIVADAGMVIVSVPIHVTEQVIG KLPPLPKDCILVDLASVKNGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR KPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGEAIELLEQG DKQAFIDSFRKVEHWFGDYAQRFQSESRVLLRQANDNRQ" misc_feature complement(2737602..2738720) /gene="tyrA" /locus_tag="SF2660" /note="bifunctional chorismate mutase/prephenate dehydrogenase; Provisional; Region: tyrA; PRK11199" /db_xref="CDD:183035" gene complement(2738731..2739801) /gene="aroF" /locus_tag="SF2661" /db_xref="GeneID:1027466" CDS complement(2738731..2739801) /gene="aroF" /locus_tag="SF2661" /note="Code: E; COG: COG0722" /codon_start=1 /transl_table=11 /product="phospho-2-dehydro-3-deoxyheptonate aldolase" /protein_id="NP_708450.1" /db_xref="GeneID:1027466" /translation="MHKDALNNVHITDEQVLMTPEQLKAAFPLSLQQEAQIADSRKTI SDIIAGRDPRLLVVCGPCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT VGWKGLINDPHMDGSFDVEAGLQIARKLLLELVNMGLPLATEALDPNSPQYLGDLFSW SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHCFVGINQAGQ VALLQTQGNPDGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE MTDALLREIHQDLNGQLTARVA" misc_feature complement(2738743..2739801) /gene="aroF" /locus_tag="SF2661" /note="phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional; Region: PRK12755" /db_xref="CDD:237190" gene 2740011..2740376 /gene="yfiL" /locus_tag="SF2662" /db_xref="GeneID:1023590" CDS 2740011..2740376 /gene="yfiL" /locus_tag="SF2662" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_708451.2" /db_xref="GeneID:1023590" /translation="MMKKFIAPLLALLVSGCQIDPYTHAPTLTSTDWYDVGMEDAISG SAIKDDDAFSDSQADRGLYLKGYAEGQKKTCQTDFTYARGLSGKSFPASCNNVENASQ LHEVWQKRADENASTIRLN" misc_feature 2740014..2740373 /gene="yfiL" /locus_tag="SF2662" /note="lipoprotein; Provisional; Region: PRK11443" /db_xref="CDD:183138" gene 2740526..2741044 /locus_tag="SF2663" /db_xref="GeneID:1025672" CDS 2740526..2741044 /locus_tag="SF2663" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708452.1" /db_xref="GeneID:1025672" /translation="MRFSHRLFLLLILLLTGAPILAQEPSDVAKNVRMMVSGIVSYTR WPALSGPPKLCIFSSSRFSTALQENAATSLPYLPVIIHTQQEAMISGCNGFYFGNESP TFQMELTEQYPSKALLLIAEQNTECIIGSAFCLIIHNNDVRFAVNLDASSRSGVKVNP DVLMLARKKNDG" misc_feature 2740619..2741026 /locus_tag="SF2663" /note="YfiR/HmsC-like; Region: DUF4154; pfam13689" /db_xref="CDD:433405" gene 2741034..2742259 /gene="yfiN" /locus_tag="SF2664" /pseudo /db_xref="GeneID:1026795" misc_feature 2741034..2742259 /gene="yfiN" /locus_tag="SF2664" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1788956 (409 aa). BLAST with identity of 99% in 409 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2742275..2742757 /gene="yfiB" /locus_tag="SF2665" /db_xref="GeneID:1023562" CDS 2742275..2742757 /gene="yfiB" /locus_tag="SF2665" /note="Code: M; COG: COG2885" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_708453.1" /db_xref="GeneID:1023562" /translation="MIKHLVAPLIFTSLILTGCQSPQGKFTPEQVAAMQSYGFTESAG DWSLGLSDAILFAKNDYKLLPESQQQIQTMAAKLASTGLTHARMDGHTDNYGEDSYNE GLSLKRANVVADAWAIGGQIPRSNLTTQGLGKKYPIASNKTAQGRAENRRVAVVITTP " misc_feature 2742275..2742754 /gene="yfiB" /locus_tag="SF2665" /note="OmpA family protein; Region: PRK09967" /db_xref="CDD:182172" gene complement(2742834..2743181) /gene="rplS" /locus_tag="SF2666" /db_xref="GeneID:1025681" CDS complement(2742834..2743181) /gene="rplS" /locus_tag="SF2666" /note="Code: J; COG: COG0335" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L19" /protein_id="NP_708454.1" /db_xref="GeneID:1025681" /translation="MSNIIKQLEQEQMKQDVPSFRPGDTVEVKVWVVEGSKKRLQAFE GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSISVKRRGAVRKAKLYYLRE RTGKAARIKERLN" misc_feature complement(2742837..2743178) /gene="rplS" /locus_tag="SF2666" /note="50S ribosomal protein L19; Provisional; Region: rplS; PRK05338" /db_xref="CDD:235418" gene complement(2743223..2743990) /gene="trmD" /locus_tag="SF2667" /db_xref="GeneID:1025670" CDS complement(2743223..2743990) /gene="trmD" /locus_tag="SF2667" /note="Code: J; COG: COG0336" /codon_start=1 /transl_table=11 /product="tRNA (guanine-N(1)-)-methyltransferase" /protein_id="NP_708455.1" /db_xref="GeneID:1025670" /translation="MWIGIISLFPEMFRAITDYGVTGRAVKNGLLSIQSWSPRDFTHD RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL ATNQKLILVCGRYEGIDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVSRFIPGVL GHEASATEDSFAEGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" misc_feature complement(2743262..2743990) /gene="trmD" /locus_tag="SF2667" /note="tRNA G37 N-methylase TrmD [Translation, ribosomal structure and biogenesis]; Region: TrmD; COG0336" /db_xref="CDD:440105" gene complement(2744021..2744569) /gene="rimM" /locus_tag="SF2668" /db_xref="GeneID:1026714" CDS complement(2744021..2744569) /gene="rimM" /locus_tag="SF2668" /note="Code: J; COG: COG0806" /codon_start=1 /transl_table=11 /product="16S rRNA-processing protein RimM" /protein_id="NP_708456.2" /db_xref="GeneID:1026714" /translation="MSKQLTAQAPVDPIVLGKMGSSYGIRGWLRVFSSTEDAESIFDY QPWFIQKAGQWQQVQLESWKHHNQDMIIKLKGVDDRDAANLLTNCEIVVDSSQLPQLE EGDYYWKDLMGCQVVTTEGYDLGKVVDMMETGSNDVLVIKANLKDAFGIKERLVPFLD GQVIKKVDLTTRSIEVDWDPGF" misc_feature complement(2744024..2744542) /gene="rimM" /locus_tag="SF2668" /note="16S rRNA-processing protein RimM; Provisional; Region: rimM; PRK00122" /db_xref="CDD:234650" gene complement(2744588..2744836) /gene="rpsP" /locus_tag="SF2669" /db_xref="GeneID:1025675" CDS complement(2744588..2744836) /gene="rpsP" /locus_tag="SF2669" /note="Code: J; COG: COG0228" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S16" /protein_id="NP_708457.1" /db_xref="GeneID:1025675" /translation="MVTIRLARHGAKKRPFYQVVVADSRNARNGRFIERVGFFNPIAS EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVNKAA" misc_feature complement(2744609..2744836) /gene="rpsP" /locus_tag="SF2669" /note="Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Region: RpsP; COG0228" /db_xref="CDD:439998" gene complement(2744973..2746334) /gene="ffh" /locus_tag="SF2670" /db_xref="GeneID:1025680" CDS complement(2744973..2746334) /gene="ffh" /locus_tag="SF2670" /note="Code: N; COG: COG0541" /codon_start=1 /transl_table=11 /product="signal recognition particle protein" /protein_id="NP_708458.1" /db_xref="GeneID:1025680" /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKDTLREVRMALLEADVA LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAV VLMAGLQGAGKTTSVGKLGNFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETL FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG EKTEALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLASKLKKGDGFDLNDF LEQLRQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTMKERAKPE IIKGSRKRRIAAGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF PGR" misc_feature complement(2745060..2746334) /gene="ffh" /locus_tag="SF2670" /note="Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport]; Region: Ffh; COG0541" /db_xref="CDD:440307" gene 2746426..2747292 /locus_tag="SF2671" /db_xref="GeneID:1027467" CDS 2746426..2747292 /locus_tag="SF2671" /note="Code: O; COG: COG0755" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708459.1" /db_xref="GeneID:1027467" /translation="MQRLEQRSPDAILLLFLIAQTVDITMPVFALLALVAYSVSLALI VPGLLQKNGGWRRMAIISAVIALVCHAIALEARILPDGDSGQNLSLLNVGSLVSLVIC TVMTIVASRNRGWLLLPIVYAFALINLALATFMPNEYITHLEATPGMLMHIGLSLFSY ATLIIAALYALQLAWIDYQLKNKKLAFNQEMPPLMSIERKMFHITQIGVVLLTLTLCT GLFYMHNLFSMENIDKAVLSIVAWFVYIVLLWGHYHEGWRGRRVVWFNVAGAVILTLA YFGSRIVQQLIS" misc_feature 2746498..2747286 /locus_tag="SF2671" /note="ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: YpjD; COG4137" /db_xref="CDD:443312" gene 2747337..2748599 /gene="yfjD" /locus_tag="SF2672" /db_xref="GeneID:1025198" CDS 2747337..2748599 /gene="yfjD" /locus_tag="SF2672" /note="Code: R; COG: COG1253" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708460.3" /db_xref="GeneID:1025198" /translation="MIIILIIMVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRV EKLLRKPDRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAE VLPKTIAALYPEKVAYPSSFLLAPLQILMMPLVWLLNAITRMLMRMMGIKTDIVVSGS LSKEELRTIVHESRSQISRRNQDMLLSVLDLEKMTVDDIMVPRSEIIGIDINDDWKSI LRQLSHSPHGRIVLYRDSLDDAISMLRVREAWRLMSEKKEFTKETMLRAADEIYFVPE GTPLSTQLVKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVT PQNDGSVIIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIGKYD IDILDVQDNMIKQVKVFPVKPLRESVAE" misc_feature 2747358..2748596 /gene="yfjD" /locus_tag="SF2672" /note="hypothetical protein; Provisional; Region: PRK11573" /db_xref="CDD:236933" gene complement(2748654..2749247) /gene="grpE" /locus_tag="SF2673" /db_xref="GeneID:1027472" CDS complement(2748654..2749247) /gene="grpE" /locus_tag="SF2673" /note="Code: O; COG: COG0576" /codon_start=1 /transl_table=11 /product="heat shock protein GrpE" /protein_id="NP_708461.1" /db_xref="GeneID:1027472" /translation="MSSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKI ANLEAQLAEAQTRERDGILRVKAEMENLRRRTELDIEKAHKFALEKFINELLPVIDSL DRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV ESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAKA" misc_feature complement(2748657..2749247) /gene="grpE" /locus_tag="SF2673" /note="heat shock protein GrpE; Provisional; Region: PRK10325" /db_xref="CDD:182379" misc_feature complement(2748930..2749073) /gene="grpE" /locus_tag="SF2673" /note="2-helical coiled coil [structural motif]; Region: 2-helical coiled coil" /db_xref="CDD:271355" misc_feature complement(order(2748837..2748842,2748858..2748860, 2748867..2748875,2748879..2748884,2748933..2748938, 2748942..2748956,2748960..2748968,2748975..2748980, 2748984..2748989,2748996..2749001,2749008..2749013, 2749020..2749022,2749026..2749034,2749041..2749046, 2749050..2749055,2749062..2749067)) /gene="grpE" /locus_tag="SF2673" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:271355" misc_feature complement(order(2748672..2748674,2748681..2748683, 2748687..2748689,2748699..2748701,2748726..2748728, 2748774..2748788,2748792..2748797,2748801..2748803, 2748927..2748929,2748936..2748938,2749002..2749004, 2749026..2749028)) /gene="grpE" /locus_tag="SF2673" /note="Hsp70 (ATPase domain) interactions [polypeptide binding]; other site" /db_xref="CDD:271355" misc_feature complement(2748837..2748884) /gene="grpE" /locus_tag="SF2673" /note="2-helical coiled coil [structural motif]; Region: 2-helical coiled coil" /db_xref="CDD:271355" gene 2749370..2750248 /gene="ppnK" /locus_tag="SF2674" /db_xref="GeneID:1027465" CDS 2749370..2750248 /gene="ppnK" /locus_tag="SF2674" /note="Code: R; COG: COG0061" /codon_start=1 /transl_table=11 /product="inorganic polyphosphate/ATP-NAD kinase" /protein_id="NP_708462.1" /db_xref="GeneID:1027465" /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCTKGYEVIVEQQIA HELQLKNVKTGTLAEIGQLADLAVVVGGDGNMLGAARTLARYDIKVIGINRGNLGFLT DLDPDNAQQQLADVLEGHYISEKRFLLEAQVCQQDCQKRISTAINEVVLHPGKVAHMI EFEVYIDEIFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA RPLVINSSSTIRLRFSHRRNDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS YFNTLSTKLGWSKKLF" misc_feature 2749370..2750245 /gene="ppnK" /locus_tag="SF2674" /note="inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK03378" /db_xref="CDD:235122" gene 2750334..2751995 /gene="recN" /locus_tag="SF2675" /db_xref="GeneID:1025690" CDS 2750334..2751995 /gene="recN" /locus_tag="SF2675" /note="Code: L; COG: COG0497" /codon_start=1 /transl_table=11 /product="recombination and repair protein" /protein_id="NP_708463.1" /db_xref="GeneID:1025690" /translation="MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGL CLGGRAEADMVRTGAARADLCARFSLKDTPAALRWLEENQLEDGHECLLRRVISSDGR SRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLA NSGQLLTTSQNALALMADGEDANLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQ IAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPEALPQYYQSLLEEQQ QLDDQADSQETLALAVTKHHQQALETARALHQQRQQYAEELAQLITDSMHALSMPHGQ FTIDVKYDEHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARK METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHYFVSKE TDGAMTETHMQSLDKKARLQELARLLGGSEVTRNTLANAKELLAA" misc_feature 2750334..2751992 /gene="recN" /locus_tag="SF2675" /note="recombination and repair protein; Provisional; Region: PRK10869" /db_xref="CDD:236781" gene 2752144..2752485 /gene="smpA" /locus_tag="SF2676" /db_xref="GeneID:1026799" CDS 2752144..2752485 /gene="smpA" /locus_tag="SF2676" /experiment="mass spectrum study" /codon_start=1 /transl_table=11 /product="small membrane protein A" /protein_id="NP_708464.3" /db_xref="GeneID:1026799" /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTANDVS KIRVGMTQQQVAYALGTPLMSDPFGTNTWFYVFRQQPGHEGVTQQTLTLTFNSSGVLT NIDNKPALSGN" misc_feature 2752144..2752482 /gene="smpA" /locus_tag="SF2676" /note="outer membrane protein assembly factor BamE; Region: PRK11548" /db_xref="CDD:183190" gene complement(2752547..2752837) /locus_tag="SF2677" /db_xref="GeneID:1025698" CDS complement(2752547..2752837) /locus_tag="SF2677" /note="Code: S; COG: COG2914" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708465.2" /db_xref="GeneID:1025698" /translation="MLGKIAVEVAYALPEKQYLQRVTLQEGATVEEAIRASGLLELRT DIDLTKNKVGIYSRPAKLSDSVHDGDRVEIYRPLIADPKELRRQRAEKSANK" misc_feature complement(2752550..2752828) /locus_tag="SF2677" /note="RnfH family protein; Region: PRK01777" /db_xref="CDD:234982" gene complement(2752827..2753264) /locus_tag="SF2678" /db_xref="GeneID:1025684" CDS complement(2752827..2753264) /locus_tag="SF2678" /note="Code: I; COG: COG2867" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708466.2" /db_xref="GeneID:1025684" /translation="MPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP GQMTAAVDVSKAGISKTFTTRNQLTSNQSILMNLVDGPFKKLIGGWKFTPLSQEACRI EFHLDFEFTNKLIELAFGRVFKELAANMVQAFTVRAKEVYSAR" misc_feature complement(2752830..2753264) /locus_tag="SF2678" /note="type II toxin-antitoxin system RatA family toxin; Region: PRK10724" /db_xref="CDD:182678" misc_feature complement(order(2752863..2752865,2752872..2752880, 2752884..2752892,2752896..2752910,2752941..2752943, 2752947..2752949,2752953..2752955,2752959..2752961, 2752989..2752991,2752995..2752997,2753001..2753006, 2753037..2753039,2753043..2753045,2753061..2753063, 2753067..2753069,2753073..2753075,2753106..2753108, 2753112..2753114,2753118..2753120,2753124..2753126, 2753154..2753156,2753199..2753204,2753208..2753216, 2753241..2753243,2753247..2753249,2753253..2753255)) /locus_tag="SF2678" /note="putative coenzyme Q binding site [chemical binding]; other site" /db_xref="CDD:176855" gene 2753435..2753917 /gene="smpB" /locus_tag="SF2679" /db_xref="GeneID:1027251" CDS 2753435..2753917 /gene="smpB" /locus_tag="SF2679" /note="Code: O; COG: COG0691" /codon_start=1 /transl_table=11 /product="SsrA-binding protein" /protein_id="NP_708467.1" /db_xref="GeneID:1027251" /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL RAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYG RVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR " misc_feature 2753459..2753905 /gene="smpB" /locus_tag="SF2679" /note="SsrA-binding protein SmpB; Region: smpB; PRK05422" /db_xref="CDD:235455" misc_feature order(2753525..2753542,2753546..2753551,2753555..2753560, 2753567..2753569,2753618..2753620,2753705..2753722, 2753804..2753806) /gene="smpB" /locus_tag="SF2679" /note="SmpB-tmRNA interface; other site" /db_xref="CDD:187755" gene 2754037..2754492 /gene="ssrA" /locus_tag="SF4557" /db_xref="GeneID:1025691" tmRNA 2754037..2754492 /gene="ssrA" /locus_tag="SF4557" /product="10Sa RNA (tmRNA); tags incomplete translation products for degradation" /db_xref="GeneID:1025691" gene 2754699..2755940 /locus_tag="SF2680" /db_xref="GeneID:1025692" CDS 2754699..2755940 /locus_tag="SF2680" /note="Code: L; COG: COG0582" /codon_start=1 /transl_table=11 /product="integrase" /protein_id="NP_708468.1" /db_xref="GeneID:1025692" /translation="MARQTKPLSVKEIESAKPKEADYVLYDGDGLELLIKSSGSKIWQ FRYIRPVTKTRAKKSIGPYPSVTLADARNYRAESRSLLAKQIDPQEHQQEQLRSSLEA KTNTFQLVAERWWNVKKASVTEDYAEDIWRSLERDVFPAIGDVSVTDIKAHTLVQAVQ PVQARGALETVRRLCQRINEVMIYAQNTGLIDAVPSVNIGKAFEKPQKKNMPSIRPDQ LSQLMQTMRTASISLSTRCLFMWQLLTITRPAEAAEARWEEVDIEAQEWKIPAARMKM NRDHTVPLSDEAIAVLEMMKPLSGNREFIFPSRIKPNQPMNSQTVNASLKRAGFGGVL VSHGLRSIASTALNEQGFPPDAIEAALAHVDKNEVRRAYNRSDYLEQRRPMMQWWANF VMAADRGSMIEGGIKGMKLVG" misc_feature 2754699..2755937 /locus_tag="SF2680" /note="integrase; Provisional; Region: PRK09692" /db_xref="CDD:170049" mobile_element 2756085..2756852 /mobile_element_type="insertion sequence:IS1" gene 2756140..2756415 /gene="insA" /locus_tag="SF2681" /db_xref="GeneID:1027474" CDS 2756140..2756415 /gene="insA" /locus_tag="SF2681" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708469.1" /db_xref="GeneID:1027474" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 2756161..>2756412 /gene="insA" /locus_tag="SF2681" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 2756442..2756837 /gene="insB" /locus_tag="SF2682" /db_xref="GeneID:1025683" CDS 2756442..2756837 /gene="insB" /locus_tag="SF2682" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708470.1" /db_xref="GeneID:1025683" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRGTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 2756445..2756834 /gene="insB" /locus_tag="SF2682" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" mobile_element 2756891..2758148 /mobile_element_type="insertion sequence:IS3" gene 2756947..2757255 /locus_tag="SF2683" /db_xref="GeneID:1025689" CDS 2756947..2757255 /locus_tag="SF2683" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence IS3 transposase InsE" /protein_id="NP_708471.1" /db_xref="GeneID:1025689" /translation="MTHMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSL YESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK " misc_feature 2756980..2757237 /locus_tag="SF2683" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2757252..2758118 /locus_tag="SF2684" /db_xref="GeneID:1027400" CDS 2757252..2758118 /locus_tag="SF2684" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence IS3A transposase InsF" /protein_id="NP_708472.1" /db_xref="GeneID:1027400" /translation="MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQ FRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKF SPVSYRAHGLPVSENLLEQDFYASGPNQKWPGDITYLRTDEGWLYLAVVIDLWSRAVI GWSMSPRMTAQLPCDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSM SAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGG LNPEQFENQNLA" misc_feature <2757252..2758100 /locus_tag="SF2684" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(2758366..2758441) /locus_tag="SF4498" /db_xref="GeneID:3161784" tRNA complement(2758366..2758441) /locus_tag="SF4498" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161784" gene 2759000..2761252 /locus_tag="SF2685" /db_xref="GeneID:1025688" CDS 2759000..2761252 /locus_tag="SF2685" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439272.1" /db_xref="GeneID:1025688" /translation="MFSIKPGPGNLPIDNPTLLSWNITDGDLNSKFNTLEYLNCITNI INACGVYPQDLKDREIISTFHAEKVINDLLKNDYKISLSPDTTYRELNKAAQSSITAP DRIGEGKTWVYQRDTMVERGDNSGVHQYGPAEHFTHIISDKPSPKDKYVAYAINIPDY ELAADVYNINVTSPSGQQETFKILINPEHLRQTLERKSLTAVQKSQCEIITPKKPGEA ILHAFNATYQQIRENMSEFARSHYGYIQIPPVTTFRADGPETPEEEKGYWFHAYQPED LCTIHNPMGDLQDFIALVKDAKKFGIDIIPDYTFNFMGIGGSGKNDLDYPSADIRAKI SKDIESGIPGYWQGQVLIPFIKDPVTKERKQIHPEDIHLTAKDFEASKDNISKDEWKN LHALKEKSLNGMPKTTPKSDQVIMLQNQYVREMRKYGVRGLRYDAAKHSKHEQIERSI TPPLKNYNERLHNTNLFNPKYHEKTVMNYMEYLVTCQLNEEQMSSLLYERDDLSAIDF SLLMKTIKAFSFGGDLLTLASKPGSTISSIPSERRILININHDFPNNGNLFNDFLFNH QQDEQLAMAYMAALPFSRPLVYWDGQVLKSTTEIKNYDGSTRVGGEAWLNKGCSTYQQ LYNEFHALYIDKAGIWSAFEGVFATKNVLAFSRGDSVNINHSPHDGLVIINKGNEEVE GTWPNKLQPRIYKNMGSNSVNIIINNTRKIIPPCKVFTLRGGSLNINIPRRSALLLGK TGEPPNYLYL" misc_feature 2759645..2760919 /locus_tag="SF2685" /note="Alpha amylase catalytic domain found in bacterial Alpha-amylases (also called 1,4-alpha-D-glucan-4-glucanohydrolase); Region: AmyAc_bac1_AmyA; cd11315" /db_xref="CDD:200454" misc_feature order(2759801..2759806,2759813..2759818,2759933..2759935, 2759942..2759944,2760167..2760169,2760299..2760301, 2760305..2760310,2760314..2760319,2760440..2760442, 2760446..2760448,2760452..2760454,2760647..2760652, 2760662..2760664) /locus_tag="SF2685" /note="active site" /db_xref="CDD:200454" misc_feature order(2759930..2759932,2760215..2760217,2760290..2760292) /locus_tag="SF2685" /note="Ca binding site [ion binding]; other site" /db_xref="CDD:200454" misc_feature order(2760305..2760307,2760440..2760442,2760650..2760652) /locus_tag="SF2685" /note="catalytic site [active]" /db_xref="CDD:200454" misc_feature 2760950..2761213 /locus_tag="SF2685" /note="Alpha amylase, C-terminal all-beta domain; Region: Alpha-amylase_C; pfam02806" /db_xref="CDD:426991" gene 2761483..2762520 /locus_tag="SF2686" /db_xref="GeneID:1025708" CDS 2761483..2762520 /locus_tag="SF2686" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708473.3" /db_xref="GeneID:1025708" /translation="MSLLCAFFRNVDIFRLWLRNEHRHVTLHLIRGSLLMNALTAVQN NAVDSGQDYSGFTLIPSAQSPRLLELTFTEQTTKQFLEQVAEWPVQALEYKSFLRFRV GKILDDLCANQLQPLLLKTLLNRAEGALLINAVGIDDVAQADEMVKLATAVAHLIGRS NFDAMSGQYYARFVVKNVDNSDSYLRQPHRVMELHNDGTYVEEITDYVLMMKIDDWEH LDHYFRHPLARRPMRFAAPPSKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEG VWLSELSDAIETSKGILSVPVPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYF AYATHHYQTHQ" misc_feature 2761606..2762508 /locus_tag="SF2686" /note="carbon starvation induced protein CsiD; Region: PRK02963" /db_xref="CDD:235092" misc_feature order(2761975..2761977,2762074..2762076,2762080..2762082, 2762095..2762097,2762191..2762193,2762467..2762469, 2762473..2762475) /locus_tag="SF2686" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:238154" misc_feature order(2762065..2762067,2762071..2762073,2762416..2762418, 2762455..2762457) /locus_tag="SF2686" /note="active site" /db_xref="CDD:238154" misc_feature order(2762065..2762067,2762071..2762073,2762416..2762418) /locus_tag="SF2686" /note="iron coordination sites [ion binding]; other site" /db_xref="CDD:238154" gene 2762474..2763808 /gene="ygaF" /locus_tag="SF2687" /db_xref="GeneID:1027475" CDS 2762474..2763808 /gene="ygaF" /locus_tag="SF2687" /note="Code: R; COG: COG0579" /codon_start=1 /transl_table=11 /product="hydroxyglutarate oxidase" /protein_id="NP_708474.1" /db_xref="GeneID:1027475" /translation="MAISLTPLTTTRRISKRKGIERMYDFVIIGGGIIGMSTAMQLID VYPDARIALLEKESGPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQN GIRYDNCGKMLVATSQLEMERMRALWERTAANGIEREWINAVELREREPNITGLGGIF VPSSGIVSYREVTAAMAKIFQARGGEIIYNAEVSALSEHKNGVVIRTRQGGEYEASTL ISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGV HLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILSSSGIRRVLQNHLRSGLGE MKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIH TCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRAARSVDALHAAFNQ" misc_feature 2762540..2763718 /gene="ygaF" /locus_tag="SF2687" /note="L-2-hydroxyglutarate oxidase; Region: PRK11728" /db_xref="CDD:183292" gene 2763831..2765279 /gene="gabD" /locus_tag="SF2688" /pseudo /db_xref="GeneID:1025693" misc_feature 2763831..2765279 /gene="gabD" /locus_tag="SF2688" /note="'Similar to Escherichia coli K12 succinate-semialdehyde dehydrogenase, NADP-dependent activity gi: 1789015 (483 aa). BLAST with identity of 96% in 483 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene 2765446..2766573 /gene="gabT" /locus_tag="SF2689" /db_xref="GeneID:1023533" CDS 2765446..2766573 /gene="gabT" /locus_tag="SF2689" /note="Code: E; COG: COG0160" /codon_start=1 /transl_table=11 /product="GABA transaminase" /protein_id="NP_708475.1" /db_xref="GeneID:1023533" /translation="MLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQ KVPGDFAKKTLLVTTGSEAVENAVKIARAATKRSGTIAFSGEYHGRTHYTLALTGKVN PYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIMIEPVQGE GGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKS IAGGFPLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDL GQKLKDGLLAIAEKHPEIGDVRGLGSMIAIELFEDGDHSKPDAKLTAEIVARARDKGL ILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIGQCFDEAKQ" misc_feature 2765446..2766567 /gene="gabT" /locus_tag="SF2689" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl18945" /db_xref="CDD:450240" misc_feature order(2765620..2765628,2765704..2765709,2765713..2765715, 2765908..2765910,2766007..2766009,2766013..2766018, 2766094..2766096) /gene="gabT" /locus_tag="SF2689" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature order(2765623..2765628,2765704..2765709,2765908..2765910, 2766007..2766009,2766016..2766018,2766094..2766096) /gene="gabT" /locus_tag="SF2689" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 2766094..2766096 /gene="gabT" /locus_tag="SF2689" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 2766811..2768211 /locus_tag="SF2690" /pseudogene="unknown" /db_xref="GeneID:1027471" gene 2768232..2768894 /gene="ygaE" /locus_tag="SF2691" /db_xref="GeneID:1027478" CDS 2768232..2768894 /gene="ygaE" /locus_tag="SF2691" /note="Code: K; COG: COG1802" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator CsiR" /protein_id="NP_708477.2" /db_xref="GeneID:1027478" /translation="MTITSLDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLQ EALSQLVAERLVTVVNQKGYRVASMSEQELLDIFDARANMEAMLVSLAIARGGDEWEA DVLAKAHLLSKLEACDASEKMLDEWDLRHQAFHTAIVAGCGSHYLLQMRERLFDLAAR YRFIWLRRTVLSVEMLEDKHDQHQTLTAAVLPRDTARASELMRQHLLTPIPIIQQAMA GN" misc_feature 2768232..2768891 /gene="ygaE" /locus_tag="SF2691" /note="DNA-binding transcriptional regulator CsiR; Provisional; Region: PRK11534" /db_xref="CDD:183181" gene complement(2768895..2769344) /gene="ygaU" /locus_tag="SF2692" /db_xref="GeneID:1025686" CDS complement(2768895..2769344) /gene="ygaU" /locus_tag="SF2692" /note="Code: S; COG: COG1652" /codon_start=1 /transl_table=11 /product="LysM domain/BON superfamily protein" /protein_id="NP_708478.2" /db_xref="GeneID:1025686" /translation="MGLFNFVKDAGEKLWDAVTGQHDKDDQAKKVQEHLSKTGIPDAD KVNIQIADGKATVTGDGLSQEAKEKILVAVGNISGIASVDDQVKTATPATASQFYTVK SGDTLSAISKQVYGNANLYNKIFEANKPMLKSPDKIYPGQVLRIPEE" misc_feature complement(2768901..2769344) /gene="ygaU" /locus_tag="SF2692" /note="LysM domain/BON superfamily protein; Provisional; Region: PRK11198" /db_xref="CDD:236880" gene complement(2769428..2769586) /locus_tag="SF2693a" /db_xref="GeneID:16608350" CDS complement(2769428..2769586) /locus_tag="SF2693a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439273.1" /db_xref="GeneID:16608350" /translation="MGFWRIVITIILPPIGVLLGKGFGWAFIINILLTLLGYIPGLIH AFWVQTRD" misc_feature complement(2769431..2769586) /locus_tag="SF2693a" /note="Membrane potential modulator PMP3/YqaE, plasma membrane proteolipid 3 (PMP3)/Esi3/RCI2/UPF0057 family [Energy production and conversion]; Region: YqaE; COG0401" /db_xref="CDD:440170" mobile_element complement(2769676..2771006) /mobile_element_type="insertion sequence:IS2" gene complement(2769687..2770592) /locus_tag="SF2693" /db_xref="GeneID:1027310" CDS complement(2769687..2770592) /locus_tag="SF2693" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_708479.1" /db_xref="GeneID:1027310" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(2769690..2770592) /locus_tag="SF2693" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(2770550..2770960) /locus_tag="SF2694" /db_xref="GeneID:1023454" CDS complement(2770550..2770960) /locus_tag="SF2694" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_708480.3" /db_xref="GeneID:1023454" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(2770553..2770915) /locus_tag="SF2694" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 2771105..2771404 /locus_tag="SF2695" /db_xref="GeneID:1025687" CDS 2771105..2771404 /locus_tag="SF2695" /note="Code: K; COG: COG0640" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708481.1" /db_xref="GeneID:1025687" /translation="MTELAQLQASTEQAAALLKAMSHPKRLLILCMLSGSPGTSAGEL TRITGLSASATSQHLARMRDEGLINSQRDAQRILYSIKNEAVNAIIATLKNVYCP" misc_feature 2771138..2771395 /locus_tag="SF2695" /note="DNA-binding transcriptional regulator, ArsR family [Transcription]; Region: ArsR; COG0640" /db_xref="CDD:440405" gene 2771414..2771938 /gene="ygaP" /locus_tag="SF2696" /db_xref="GeneID:1027473" CDS 2771414..2771938 /gene="ygaP" /locus_tag="SF2696" /note="Code: P; COG: COG0607" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708482.1" /db_xref="GeneID:1027473" /translation="MALTTISPHDAQELIARGAKLIDIRDADEYLREHIPEADLAPLS VLEQSGLPPKLRREQIIFHCQAGKRTSNNADKLAAIAAPAEIFLLEDGIDGWKRAGLP VAVNKSQPLPLMRQVQIAAGGLILNGVVLGYTVNSGFFLLSGFVGAGLLFAGISGFCG MARLLDKMPWNQRA" misc_feature 2771420..2771722 /gene="ygaP" /locus_tag="SF2696" /note="Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases; Region: RHOD_YgaP; cd01527" /db_xref="CDD:238785" misc_feature 2771603..2771605 /gene="ygaP" /locus_tag="SF2696" /note="active site residue [active]" /db_xref="CDD:238785" misc_feature 2771756..2771914 /gene="ygaP" /locus_tag="SF2696" /note="Protein of unknown function (DUF2892); Region: DUF2892; pfam11127" /db_xref="CDD:463227" gene complement(2771985..2772389) /gene="stpA" /locus_tag="SF2697" /db_xref="GeneID:1027464" CDS complement(2771985..2772389) /gene="stpA" /locus_tag="SF2697" /note="Code: R; COG: COG2916" /codon_start=1 /transl_table=11 /product="DNA binding protein, nucleoid-associated" /protein_id="NP_708483.1" /db_xref="GeneID:1027464" /translation="MSVMLQSLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE EQQQRELAERQEKISTWLELMKADGINPEELLGNSSAAAPRAGKKRQPRPAKYKFTDV NGETKTWTGQGRTPKPIAQALAEGKSLDDFLI" misc_feature complement(2771988..2772389) /gene="stpA" /locus_tag="SF2697" /note="DNA-binding protein StpA; Region: PRK10328" /db_xref="CDD:182380" gene 2773057..2773506 /locus_tag="SF2698" /db_xref="GeneID:1025707" CDS 2773057..2773506 /locus_tag="SF2698" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708484.1" /db_xref="GeneID:1025707" /translation="MFSPQSRLRHAVADTFAMVVYCSVVNMCIEVFLSGMSFEQSFYS RLVAIPVNILIAWPYGMYRDLFMRAARKVSPSGWIKNLADILAYVTFQSPVYVAILLV VGADWHQIMAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSRYQQVKA" misc_feature 2773063..2773479 /locus_tag="SF2698" /note="L-alanine exporter; Region: AlaE; pfam06610" /db_xref="CDD:399538" gene complement(2773543..2773887) /gene="ygaC" /locus_tag="SF2699" /db_xref="GeneID:1025888" CDS complement(2773543..2773887) /gene="ygaC" /locus_tag="SF2699" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708485.1" /db_xref="GeneID:1025888" /translation="MYLRPDEVARVLEKVGFTVDVVTQKAYGYRRGENYVYVNREARM GRTALVIHPTLKERSSTLAEPASDIKTCDHYQQFPLYLAGERHEHYGIPHGFSSRVAL ERYLNGLFGEAS" misc_feature complement(2773555..2773887) /gene="ygaC" /locus_tag="SF2699" /note="hypothetical protein; Provisional; Region: PRK10556" /db_xref="CDD:182545" gene 2774039..2774368 /locus_tag="SF2700" /pseudogene="unknown" /db_xref="GeneID:1026803" gene 2774616..2774861 /gene="nrdH" /locus_tag="SF2701" /db_xref="GeneID:1025701" CDS 2774616..2774861 /gene="nrdH" /locus_tag="SF2701" /note="Code: O; COG: COG0695" /codon_start=1 /transl_table=11 /product="glutaredoxin-like protein" /protein_id="NP_708487.1" /db_xref="GeneID:1025701" /translation="MRITIYTRNDCVQCHATKRAMENRGFDFEMINVDRVPEAAEALR AQGFRQLPVVIAGDLSWSGFRPDMINRLHPAPHAASA" misc_feature 2774616..2774858 /gene="nrdH" /locus_tag="SF2701" /note="glutaredoxin-like protein NrdH; Region: PRK10329" /db_xref="CDD:182381" misc_feature order(2774646..2774648,2774655..2774657) /gene="nrdH" /locus_tag="SF2701" /note="catalytic residues [active]" /db_xref="CDD:239274" gene 2774858..2775268 /gene="nrdI" /locus_tag="SF2702" /db_xref="GeneID:1027460" CDS 2774858..2775268 /gene="nrdI" /locus_tag="SF2702" /note="Code: F; COG: COG1780" /codon_start=1 /transl_table=11 /product="ribonucleotide reductase stimulatory protein" /protein_id="NP_708488.1" /db_xref="GeneID:1027460" /translation="MSQLVYFSSSSENTQRFIERLGLPAVRIPLNERERIQVDEPYIL IVPSYGGGGTAGAVPRQVIRFLNDEHNRALLRGVIASGNRNFGEAYGRAGDVIARKCG VPWLYRFELMGTQSDIENVRKGVTEFWQRQPQNA" misc_feature 2774867..2775262 /gene="nrdI" /locus_tag="SF2702" /note="Flavodoxin NrdI, NrdF-interacting activator of class Ib ribonucleotide reductase [Nucleotide transport and metabolism]; Region: NrdI; COG1780" /db_xref="CDD:441386" gene 2775280..2777385 /gene="nrdE" /locus_tag="SF2703" /db_xref="GeneID:1025704" CDS 2775280..2777385 /gene="nrdE" /locus_tag="SF2703" /note="Code: F; COG: COG0209" /codon_start=1 /transl_table=11 /product="ribonucleotide-diphosphate reductase subunit alpha" /protein_id="NP_708489.2" /db_xref="GeneID:1025704" /translation="MDYHALNAMLNLYDSAGRIQFDKDRQAVDAFIATHVRPNSVTFS SQQQRLNWLVNEGYYDESVLNRYSRDFVITLFAHAHTSGFRFQTFLGAWKFYTSYTLK TFDGKRYLEDFADRVTMVALTLAQGDETLALQLTDEMLSGRFQPATPTFLNCGKQQRG ELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAGAPIKRIENQSSGV IPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKRENADEKIRIKTLSLG VVIPDITFHLAKENAQMALFSPYDVERVYGKPFADIAISEHYDELVADERIRKKYLNA RDFFQRLAEIQFESGYPYIMYEDTVNRANPIAGRINMSNLCSEILQVNSASEYDENLD YARTGHDISCNLGSLNIAHTMDSPDFSRTVETAVRGLTAVSDMSHIRSVPSIEAGNAA SHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHALRTSMLLARERGETFA GFKQSRYASGEYFSQYLQGNWQPKTAKVGELFARSCITLPTREMWAQLRDDVMRYGIY NQNLQAVPPTGSISYINHATSSIHPIVAKVEIRKEGKTGRVYYPAPFMTNENLALYQD AYEIGAEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIYAWRKGIKTLYYIR LRQMALEGTEIEGCVSCAL" misc_feature 2775283..2777382 /gene="nrdE" /locus_tag="SF2703" /note="ribonucleoside-diphosphate reductase, class 1b, alpha subunit; Region: RNR_1b_NrdE; TIGR04170" /db_xref="CDD:211905" gene 2777395..2778354 /gene="nrdF" /locus_tag="SF2704" /db_xref="GeneID:1025695" CDS 2777395..2778354 /gene="nrdF" /locus_tag="SF2704" /note="Code: F; COG: COG0208" /codon_start=1 /transl_table=11 /product="ribonucleotide-diphosphate reductase subunit beta" /protein_id="NP_708490.1" /db_xref="GeneID:1025695" /translation="MKLSRISAINWNKISDDKDLEVWNRLTSNFWLPEKVPLSNDIPA WQTLTVVEQQLTMRVFTGLTLLDTLQNVIGAPSLMPDALTPHEEAVLSNISFMEAVHA RSYSSIFSTLCQTKDVDAAYAWSEENAPLQRKAQIIQQHYRGDDPLKKKIASVFLESF LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQKNMEKISLGQREEL KSFAFDLLLELYDNELQYTDELYAETPWADDVKAFLCYNTNKALMNLGYEPLFPAEMA EVNPAILAALSPNADENHDFFSGSGSSYVMGKAVETEDEDWNF" misc_feature 2777410..2778351 /gene="nrdF" /locus_tag="SF2704" /note="ribonucleoside-diphosphate reductase, class 1b, beta subunit; Region: RNR_1b_NrdF; TIGR04171" /db_xref="CDD:275027" misc_feature order(2777419..2777421,2777452..2777454,2777473..2777475, 2777668..2777673,2777680..2777682,2777689..2777694, 2777701..2777703,2777710..2777712,2777758..2777763, 2777770..2777772) /gene="nrdF" /locus_tag="SF2704" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153108" misc_feature order(2777485..2777487,2777593..2777595,2777686..2777688, 2777695..2777697,2777707..2777709,2777962..2777967, 2777977..2777979) /gene="nrdF" /locus_tag="SF2704" /note="putative radical transfer pathway [active]" /db_xref="CDD:153108" misc_feature order(2777593..2777595,2777686..2777688,2777695..2777697, 2777866..2777868,2777968..2777970,2777977..2777979) /gene="nrdF" /locus_tag="SF2704" /note="diiron center [ion binding]; other site" /db_xref="CDD:153108" misc_feature 2777707..2777709 /gene="nrdF" /locus_tag="SF2704" /note="tyrosyl radical; other site" /db_xref="CDD:153108" gene 2778709..2779911 /gene="proV" /locus_tag="SF2705" /db_xref="GeneID:1027461" CDS 2778709..2779911 /gene="proV" /locus_tag="SF2705" /note="Code: E; COG: COG1125" /codon_start=1 /transl_table=11 /product="glycine betaine transporter ATP-binding subunit" /protein_id="NP_708491.2" /db_xref="GeneID:1027461" /translation="MAIKLKIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGV KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSA KDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALT QQQGLDAALIDAPLAVDAQTPLSELLSHVGQAPCAVPVVDEDQQYVGIISKGMLLRAL DREGVNNG" misc_feature 2778709..2779908 /gene="proV" /locus_tag="SF2705" /note="proline/glycine betaine ABC transporter ATP-binding protein ProV; Region: PRK10070" /db_xref="CDD:182221" gene 2779904..2780968 /gene="proW" /locus_tag="SF2706" /db_xref="GeneID:1023535" CDS 2779904..2780968 /gene="proW" /locus_tag="SF2706" /note="Code: E; COG: COG1174" /codon_start=1 /transl_table=11 /product="glycine betaine transporter membrane protein" /protein_id="NP_708492.1" /db_xref="GeneID:1023535" /translation="MADQNNPWDTTPAADSAAQSADAWGTPTTAPADGGGADWLTSTP APNVEHFNILDPFHKTLIPLDSWVTEGIDWVVTHFRPVFQGVRVPVDYILNGFQQLLL GMPAPVAIIVFALITWQISGVGMGVATLVSLIAIGAIGAWSQAMVTLALVLTALLFCI VIGLPLGIWLARSPRAAKIIRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA LPPIIRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR GNRRWYTTGPVGLLTRPFIK" misc_feature 2779904..2780965 /gene="proW" /locus_tag="SF2706" /note="proline/glycine betaine ABC transporter permease ProW; Region: PRK10952" /db_xref="CDD:236805" misc_feature order(2780384..2780389,2780396..2780401,2780414..2780416, 2780441..2780452,2780456..2780485,2780492..2780497, 2780501..2780503,2780549..2780554,2780558..2780560, 2780564..2780566,2780573..2780578,2780582..2780584, 2780594..2780599,2780606..2780608,2780657..2780659, 2780699..2780704,2780711..2780713,2780732..2780743, 2780750..2780755,2780792..2780797,2780825..2780830, 2780837..2780842,2780846..2780851,2780858..2780863) /gene="proW" /locus_tag="SF2706" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(2780459..2780503,2780732..2780749) /gene="proW" /locus_tag="SF2706" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(2780501..2780503,2780534..2780536,2780750..2780752, 2780786..2780788,2780795..2780797,2780825..2780827) /gene="proW" /locus_tag="SF2706" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(2780609..2780647,2780663..2780668,2780678..2780680) /gene="proW" /locus_tag="SF2706" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 2781026..2782018 /gene="proX" /locus_tag="SF2707" /db_xref="GeneID:1027463" CDS 2781026..2782018 /gene="proX" /locus_tag="SF2707" /note="Code: E; COG: COG2113" /codon_start=1 /transl_table=11 /product="glycine betaine transporter periplasmic subunit" /protein_id="NP_708493.2" /db_xref="GeneID:1027463" /translation="MRHSVLFATAFATLISTQTFAADLPGKGITVNPVQSTITEETFQ TLLVSRALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPLHDNMYEAAGGDKK FYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPG WGCEGAINHQLAAYELTNTVTHNQGNYAAMMADTISRYKEGKPVFYYTWTPYWVSNEL KPGKDVVWLQVPFSALPGDKNADTKLPNGANYGFPVSTMHIVANKAWTEKNPAAAKLF AIMQLPVADINAQNAIMHDGKASEGDIQGHVDGWIKAHQQQFDGWVNEALAAQK" misc_feature 2781026..2782015 /gene="proX" /locus_tag="SF2707" /note="proline/glycine betaine ABC transporter substrate-binding protein ProX; Region: proX; PRK11119" /db_xref="CDD:236852" misc_feature order(2781137..2781139,2781143..2781145,2781281..2781283, 2781368..2781370,2781494..2781496,2781506..2781511, 2781650..2781652) /gene="proX" /locus_tag="SF2707" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:270356" gene 2782210..2783389 /locus_tag="SF2708" /pseudogene="unknown" /db_xref="GeneID:1025699" gene 2783513..2784250 /locus_tag="SF2709" /db_xref="GeneID:1027468" CDS 2783513..2784250 /locus_tag="SF2709" /note="Code: E; COG: COG1296" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708495.1" /db_xref="GeneID:1027468" /translation="MESPTPQPAPGSATFMEGCKDSLPIVISYIPVAFAFGLNATRLG FSPLESVFFSCIIYAGASQFVITAMLAAGSSLWVAALSVMAMDVRHVLYGPSLRSRII QRLQKSKTALWAFGLTDEVFAAATAKLVRNNRRWSENWMIGIAFSSWSSWVFGTVIGA FSGSGLLQGYPAVEAALGFMLPALFMSFLLASFQRKQSLCVTAALVGALAGVTLFSIP VAILAGIVCGCLTALIQAFWQGAPDEL" misc_feature 2783555..2784244 /locus_tag="SF2709" /note="Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]; Region: AzlC; COG1296" /db_xref="CDD:440907" gene 2784240..2784575 /gene="ygaH" /locus_tag="SF2710" /db_xref="GeneID:1027459" CDS 2784240..2784575 /gene="ygaH" /locus_tag="SF2710" /codon_start=1 /transl_table=11 /product="L-valine exporter" /protein_id="NP_708496.1" /db_xref="GeneID:1027459" /translation="MSYEVLLLGLLVGAANYCFRYLPLRLRVGNARPTKRGAVGILLD TIGIASICALLVVSTAPEVMHDTRRFVPTLVGFAVLGASFYKTRSIIIPTLLSALAYG LAWKVMAII" misc_feature 2784240..2784569 /gene="ygaH" /locus_tag="SF2710" /note="L-valine transporter subunit YgaH; Region: PRK10408" /db_xref="CDD:182434" gene 2784666..2785197 /locus_tag="SF2711" /pseudogene="unknown" /db_xref="GeneID:1025694" gene 2785324..2786496 /gene="emrA" /locus_tag="SF2712" /pseudo /db_xref="GeneID:1025702" misc_feature 2785324..2786496 /gene="emrA" /locus_tag="SF2712" /note="Similar to Escherichia coli K12 multidrug resistance secretion protein gi: 1789041 (391 aa). BLAST with identity of 97% in 391 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2786513..2788051 /gene="emrB" /locus_tag="SF2713" /db_xref="GeneID:1027462" CDS 2786513..2788051 /gene="emrB" /locus_tag="SF2713" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="multidrug resistant protein emrB" /protein_id="NP_708498.2" /db_xref="GeneID:1027462" /translation="MQQQKPLEGAQLVIMTIALSLATFMQVLNSTIANVAIPTIAGNL GSSLSQGTWVITSFGVANAISIPLTGWLAKRVGEVKLFLWSTIAFAIASWACGVSSSL NMLIFFRVIQGIVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY ISDNYHWGWIFFINVPIGVAVVLMTLQTLRGRETRTERRRIDAVGLALLVIGIGSLQI MLDRGKELDCFSSQEIIILTVVAVVAICFLIVWELTDDNPIVDLSLFKSRNFTIGCLC ISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMR RLVTFSFIMYAVCFYWRAYTFEPGMDFCASAWPQFIQGFAVVCFFMPLTTITLSGLPP ERLAAASSLSNFTRTLAGSIGTSITTTMWTNRESMHHAQLTESVNPFNPNAQAMYSQL EGLGMTQQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGG GGAH" misc_feature 2786522..2788018 /gene="emrB" /locus_tag="SF2713" /note="multidrug efflux MFS transporter permease subunit EmrB; Region: EmrB; NF000391" /db_xref="CDD:411083" gene complement(2788115..2788630) /gene="ygaG" /locus_tag="SF2714" /db_xref="GeneID:1025700" CDS complement(2788115..2788630) /gene="ygaG" /locus_tag="SF2714" /note="Code: T; COG: COG1854" /codon_start=1 /transl_table=11 /product="S-ribosylhomocysteinase" /protein_id="NP_708499.1" /db_xref="GeneID:1025700" /translation="MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPN KEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD AWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILEREVRINSNEELA LPKEKLQELHI" misc_feature complement(2788148..2788630) /gene="ygaG" /locus_tag="SF2714" /note="S-ribosylhomocysteine lyase; Region: PRK02260" /db_xref="CDD:179399" gene complement(2788780..2790337) /gene="gshA" /locus_tag="SF2715" /pseudogene="unknown" /db_xref="GeneID:1027442" gene complement(2790410..2790838) /locus_tag="SF2716" /db_xref="GeneID:1025717" CDS complement(2790410..2790838) /locus_tag="SF2716" /note="Code: S; COG: COG1238" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708501.1" /db_xref="GeneID:1025717" /translation="MSEALSLFSLFASSFLSATLLPGNSEVVLVAMLLSGISHPWVLV LTATMGNSLGGLTNVILGRFFPLRKTSRWQEKATGWLKRYGAVTLLLSWMPVVGDLLC LLAGWMRISWGPVIFFLCLGKALRYVAVAAATVQGMMWWH" misc_feature complement(2790425..2790826) /locus_tag="SF2716" /note="Uncharacterized membrane protein YqaA, VTT domain [Function unknown]; Region: YqaA; COG1238" /db_xref="CDD:440851" gene complement(2790835..2791401) /gene="yqaB" /locus_tag="SF2717" /db_xref="GeneID:1025387" CDS complement(2790835..2791401) /gene="yqaB" /locus_tag="SF2717" /note="Code: R; COG: COG0637" /codon_start=1 /transl_table=11 /product="fructose-1-P/6-phosphogluconate phosphatase" /protein_id="NP_708502.1" /db_xref="GeneID:1025387" /translation="MYERYAGLIFDMDGTILDTAPTHRKAWREVLGHYGLQYDIQAMI ALNGSPTWRIAQAIIELNQADLDPHALAREKTEAVRSMLLDSVEPLPLVEVVKSWHGR RPMAVGTGSESAIAEALLAHLGLRRYFDAVVAADHVKHHKPAPDTFLLCAQRMGVQPT QCVVFEDADFGIQAARAAGMDAVDVRLL" misc_feature complement(2790838..2791401) /gene="yqaB" /locus_tag="SF2717" /note="fructose-1-phosphate/6-phosphogluconate phosphatase; Region: PRK10725" /db_xref="CDD:182679" misc_feature complement(order(2790889..2790894,2790901..2790906, 2790976..2790978,2791072..2791077,2791357..2791371)) /gene="yqaB" /locus_tag="SF2717" /note="active site" /db_xref="CDD:319808" misc_feature complement(order(2790889..2790894,2790901..2790906, 2790976..2790978,2791072..2791077,2791357..2791371)) /gene="yqaB" /locus_tag="SF2717" /note="active site" /db_xref="CDD:319808" gene complement(2791549..2791625) /locus_tag="SF4499" /db_xref="GeneID:3161843" tRNA complement(2791549..2791625) /locus_tag="SF4499" /product="tRNA-Arg" /codon_recognized="CGU" /db_xref="GeneID:3161843" misc_feature 2791655..2792341 /note="potential protein location (hypothetical protein SF2718 [Shigella flexneri 2a str. 301]) that overlaps RNA (tRNA-R)" gene complement(2791690..2791766) /locus_tag="SF4500" /db_xref="GeneID:3161805" tRNA complement(2791690..2791766) /locus_tag="SF4500" /product="tRNA-Arg" /codon_recognized="CGU" /db_xref="GeneID:3161805" gene complement(2791831..2791907) /locus_tag="SF4501" /db_xref="GeneID:3161795" tRNA complement(2791831..2791907) /locus_tag="SF4501" /product="tRNA-Arg" /codon_recognized="CGU" /db_xref="GeneID:3161795" gene complement(2791972..2792048) /locus_tag="SF4502" /db_xref="GeneID:3161818" tRNA complement(2791972..2792048) /locus_tag="SF4502" /product="tRNA-Arg" /codon_recognized="CGU" /db_xref="GeneID:3161818" gene complement(2792052..2792144) /locus_tag="SF4503" /db_xref="GeneID:3161791" tRNA complement(2792052..2792144) /locus_tag="SF4503" /product="tRNA-Ser" /codon_recognized="AGC" /db_xref="GeneID:3161791" gene complement(2792460..2792645) /gene="csrA" /locus_tag="SF2719" /db_xref="GeneID:1027470" CDS complement(2792460..2792645) /gene="csrA" /locus_tag="SF2719" /note="Code: T; COG: COG1551" /codon_start=1 /transl_table=11 /product="carbon storage regulator" /protein_id="NP_708504.1" /db_xref="GeneID:1027470" /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR EEIYQRIQAEKSQQSSY" misc_feature complement(2792466..2792645) /gene="csrA" /locus_tag="SF2719" /note="carbon storage regulator CsrA; Region: PRK01712" /db_xref="CDD:234973" gene complement(2792880..2795510) /gene="alaS" /locus_tag="SF2720" /db_xref="GeneID:1025713" CDS complement(2792880..2795510) /gene="alaS" /locus_tag="SF2720" /note="Code: J; COG: COG0013" /codon_start=1 /transl_table=11 /product="alanyl-tRNA synthetase" /protein_id="NP_708505.2" /db_xref="GeneID:1025713" /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGM NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY FKHDAIQFAWELLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDN KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDL SNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL VGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDG ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI RVDSASEFKGYDHLELNGKVTALFVDGKAVDAINAGQEAVVVLDQTPFYAESGGQVGD KGELKGANFSFAVEDTQKYGQAIGHIGKLAAGSLKVGDAVQADIDEARRARIRLNHSA THLMHAALRQVLGTHVSQKGSLVNDKVLRFDFSHNEAMKPEEIRAVEDLVNAQIRRNL PIETNIMNLEAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI ISESGTAAGVRRIEAVTGEGAITTVHADSDRLSEVAHLLKGDSNNLADKVRSVLERTR QLEKELQQLKEQAAAQESANLSSKAIDVNGVKLLVSELSGVEPKMLRTMVDDLKNQLG STIIVLATVAEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD AAALPAALASVKGWVSAKLQ" misc_feature complement(2792886..2795504) /gene="alaS" /locus_tag="SF2720" /note="Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: AlaS; COG0013" /db_xref="CDD:439784" gene complement(2795638..2796138) /gene="recX" /locus_tag="SF2721" /db_xref="GeneID:1025697" CDS complement(2795638..2796138) /gene="recX" /locus_tag="SF2721" /note="Code: R; COG: COG2137" /codon_start=1 /transl_table=11 /product="recombination regulator RecX" /protein_id="NP_708506.1" /db_xref="GeneID:1025697" /translation="MTESTSRRPAYARLLDRAVRILAVRDHSEQELRRKLAAPIMGKN GPEEIDATAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKGYGPARIRQELNQKGIS REATEKAMRECDIDWCALARDQATRKYGEPLPTVFSEKVKIQRFLLYRGYLMEDIQDI WRNFAD" misc_feature complement(2795641..2796132) /gene="recX" /locus_tag="SF2721" /note="recombination regulator RecX; Reviewed; Region: recX; PRK00117" /db_xref="CDD:234646" gene complement(2796381..2797442) /gene="recA" /locus_tag="SF2722" /db_xref="GeneID:1027454" CDS complement(2796381..2797442) /gene="recA" /locus_tag="SF2722" /note="Code: L; COG: COG0468" /codon_start=1 /transl_table=11 /product="recombinase A" /protein_id="NP_708507.2" /db_xref="GeneID:1027454" /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP IYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF YASVRLDIRRIGAVKEGENVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV DLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNPETAKEIEKKVRELLLSNPNS TPDFSVDDSEGVAETNEDF" misc_feature complement(2796399..2797442) /gene="recA" /locus_tag="SF2722" /note="recombinase A; Provisional; Region: recA; PRK09354" /db_xref="CDD:236476" gene complement(2797522..2798019) /gene="ygaD" /locus_tag="SF2723" /db_xref="GeneID:1025712" CDS complement(2797522..2798019) /gene="ygaD" /locus_tag="SF2723" /note="Code: R; COG: COG1546" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708508.2" /db_xref="GeneID:1025712" /translation="MTDSELMQLSEQVGQALKARGATVTTAESCTGGWVAKVITDIAG SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADYAVSI SGIAGPDGGSEEKPVGTVWFAFATARGEGITWRECFSGDRDAVRRQATAYALQTLWQQ FLQNT" misc_feature complement(2797528..2798019) /gene="ygaD" /locus_tag="SF2723" /note="nicotinamide-nucleotide amidase; Region: PRK03661" /db_xref="CDD:179627" gene complement(2798164..2799249) /gene="mltB" /locus_tag="SF2724" /db_xref="GeneID:1027450" CDS complement(2798164..2799249) /gene="mltB" /locus_tag="SF2724" /note="Code: M; COG: COG2951" /codon_start=1 /transl_table=11 /product="murein hydrolase B" /protein_id="NP_708509.2" /db_xref="GeneID:1027450" /translation="MFKRRYVTLLPLFVLLAACSSKPKPTETETTTGTPSGGFLLEPQ HNVMQMGGDFANNPNAQQFIDKMVNKHGFDRQQLQEILSQAKRLDSVLRLMDNQAPTT SVKPPSGPNGAWLRYRKKFITPDNVQNGVVFWNQYEDALNRAWQVYGVPPEIIVGIIG VETRWGRVMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFA GAMGYGQFMPSSYKQYAVDFSGDGHINLWDPVDAIGSVANYFKAHGWVKGDQVAIMAN GQAPGLPNGFKTKYSISQLAAAGLTPQQPLGNHQQASLLRLDVGTGYQYWYGLPNFYT ITRYNHSTHYAMAVWQLGQAVALARVQ" misc_feature complement(2798167..2799249) /gene="mltB" /locus_tag="SF2724" /note="murein hydrolase B; Provisional; Region: PRK10760" /db_xref="CDD:236754" gene 2799505..2800067 /gene="srlA" /locus_tag="SF2725" /pseudo /db_xref="GeneID:1027448" misc_feature 2799505..2800067 /gene="srlA" /locus_tag="SF2725" /note="'Similar to Escherichia coli K12 PTS system, glucitol/sorbitol-specific IIC component, one of two gi: 1789054 (187 aa). BLAST with identity of 92% in 131 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct.'" /pseudo gene 2800064..2801023 /gene="srlE" /locus_tag="SF2726" /db_xref="GeneID:1025710" CDS 2800064..2801023 /gene="srlE" /locus_tag="SF2726" /codon_start=1 /transl_table=11 /product="PTS system glucitol/sorbitol-specific transporter subunit IIBC" /protein_id="NP_708510.1" /db_xref="GeneID:1025710" /translation="MTRIRIEKGTGGWGGPLELEATPGKKIVYITAGTRPAIVDKLAQ LTGWQAIDGFKEGEPAEAEIGVAVIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY IVEDIYVSGVKEENITVVGDATPQPSSVGRDYDTSKKITEQSDGLLAKVGMGMGSAVA VLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGLVMLA LICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACDFIPV GLSLAEARQDTVRVGVPSVLVSRFLTGAPTVLIAWFVSGFIYQ" misc_feature 2800067..2801020 /gene="srlE" /locus_tag="SF2726" /note="PTS system, glucitol/sorbitol-specific, IIBC component; Region: EIIBC-GUT; TIGR00825" /db_xref="CDD:129905" gene 2801034..2801405 /gene="srlB" /locus_tag="SF2727" /db_xref="GeneID:1025719" CDS 2801034..2801405 /gene="srlB" /locus_tag="SF2727" /codon_start=1 /transl_table=11 /product="PTS system glucitol/sorbitol-specific transporter subunit IIA" /protein_id="NP_708511.1" /db_xref="GeneID:1025719" /translation="MTVIYQTTITRIGASATDALSDQMLITFREGAPADLEEYCFIHC HGELKGALHPGLQFSLGQHRYPVTAVGSVAEDNLRELGHVTLRFDGLNEAEFPGTVHV AGPVPDDIAPGSVLKFESVKE" misc_feature 2801034..2801393 /gene="srlB" /locus_tag="SF2727" /note="PTS glucitol/sorbitol transporter subunit IIA; Region: PRK10377" /db_xref="CDD:182419" gene 2801409..2802188 /gene="srlD" /locus_tag="SF2728" /db_xref="GeneID:1027455" CDS 2801409..2802188 /gene="srlD" /locus_tag="SF2728" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="sorbitol-6-phosphate dehydrogenase" /protein_id="NP_708512.1" /db_xref="GeneID:1027455" /translation="MNQVAVVIGGGQTLGAFLCHGLAAEGYRVAVVDIQSDKAANVAQ EINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG GVGLTQSLALDLAEYGITVHSLMLGNLLKSRMFQSLLPQYATKLGIKPDQVEQYYIDK VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF" misc_feature 2801409..2802185 /gene="srlD" /locus_tag="SF2728" /note="sorbitol-6-phosphate dehydrogenase; Provisional; Region: PRK12384" /db_xref="CDD:183489" gene 2802293..2802652 /gene="gutM" /locus_tag="SF2729" /db_xref="GeneID:1025714" CDS 2802293..2802652 /gene="gutM" /locus_tag="SF2729" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator GutM" /protein_id="NP_708513.1" /db_xref="GeneID:1025714" /translation="MVSALITVAVIAWCAQLALGGWQISRFNRAFDTLCQQGRVGVDR SSGRFKPRVVVAIALDDQQCIVDTLFMKGLTVFARPQKIPAITGMHAGDLQPDVIFPH DPLSQNALSLALKLKRG" misc_feature 2802293..2802646 /gene="gutM" /locus_tag="SF2729" /note="transcriptional regulator GutM; Region: PRK10234" /db_xref="CDD:182322" gene 2802719..2803492 /gene="srlR" /locus_tag="SF2730" /db_xref="GeneID:1027469" CDS 2802719..2803492 /gene="srlR" /locus_tag="SF2730" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor SrlR" /protein_id="NP_708514.1" /db_xref="GeneID:1027469" /translation="MKPRQRQAAILEYLQKQGKCSVEELAQYFDTTGTTIRKDLVILE HAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKELIAEAAVSFIHDGDSIILDAGST VLQIVPLLSRFNNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA FEHFTFDKLFMGTDGIDLNAGVTTFNEVYTVSKAMCNAAREVILMADSSKFGRKSPNV VCSLESVDKLITDAGIDPAFRQALEEKGIDVIITGESNE" misc_feature 2802719..2803486 /gene="srlR" /locus_tag="SF2730" /note="DNA-binding transcriptional repressor; Region: srlR; PRK10434" /db_xref="CDD:182457" gene 2803524..2804450 /gene="gutQ" /locus_tag="SF2731" /db_xref="GeneID:1025715" CDS 2803524..2804450 /gene="gutQ" /locus_tag="SF2731" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708515.4" /db_xref="GeneID:1025715" /translation="MLELQEASRLPERLGDDFVRAANIILHCEGKVVVSGIGKSGHIG KKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDK SIALLAMTGKPTSPLGLAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQ ARGFNEEDFARSHPAGALGARLLNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLG LVAVCDAQQQVQGVFTDGDLRRWLVGGGALTTPVNEAMTTGGTTLQAQSRAIDAKEVL MKRKITAAPVVDENGKLTGAINLQDFYQAGII" misc_feature 2803524..2804447 /gene="gutQ" /locus_tag="SF2731" /note="arabinose-5-phosphate isomerase GutQ; Region: gutQ; PRK11543" /db_xref="CDD:183186" gene complement(2804447..2806036) /gene="ygaA" /locus_tag="SF2732" /db_xref="GeneID:1027449" CDS complement(2804447..2806036) /gene="ygaA" /locus_tag="SF2732" /note="Code: T; COG: COG3604" /codon_start=1 /transl_table=11 /product="2-component transcriptional regulator" /protein_id="NP_708516.3" /db_xref="GeneID:1027449" /translation="MSSQNDYQSNGRYDNIYSQIDSEAKMSFSVDVLANIAIELQRGI GHQDRFQRLITTLRQVLECDASALLRYDSRQFIPLAIDGLAKDVLGRRFALEGHPRLE AIARAGDVVRFPADSELPDPYDGLIPGQESLKVHACVGLPLFVGQNLIGALTLDGMQP DQFDVFSDEELRLIAALAAGALSNALLIEQLESQNMLPGDATPFEAVKQTQMIGLSPG MTQLKKEIEIVAASDLNVLISGETGTGKELVAKAIHEASPRAVNPLVYLNCAALPESV AESELFGHVKGAFTGAISNRSGKFEMADNGTLFLDEIGELSLALQAKLLRVLQYGDIQ RVGDDRSLRVDVRVLAATNRDLREEVLAGRFRADLFHRLSVFPLSVPPLRERGDDVIL LAGYFCEQCRLRQGLSRVVLSAGARNLLQHYSFPGNVRELEHAIHRAVVLARATRNGD EVILEAQHFAFPEVTLPPPEAAAVPVVKQNLREATEAFQRETIRQALAQNHHNWAACA RMLETDVANLHRLAKRLGLKD" misc_feature complement(2804450..2805955) /gene="ygaA" /locus_tag="SF2732" /note="nitric oxide reductase transcriptional regulator NorR; Region: PRK05022" /db_xref="CDD:235331" gene 2806148..2807587 /locus_tag="SF2733" /db_xref="GeneID:1025213" CDS 2806148..2807587 /locus_tag="SF2733" /note="Code: C; COG: COG0426" /codon_start=1 /transl_table=11 /product="anaerobic nitric oxide reductase flavorubredoxin" /protein_id="NP_708517.1" /db_xref="GeneID:1025213" /translation="MSIVVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK NVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTPIYC TANAIDSINGHHHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLTGDA VLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL PVDMIATSHGVVWRDNPTQIVELYLKWAADYQEDRITIFYDTMSNNTRMMADAIAQGI AETDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR FRNKRASAFGSHGWSGGAMDRLSTRLQDAGFEMSLSLKAKWRPDQDALELCREHGREI ARQWALAPLPQSTVNTVVKEETSATTTADLGPRMQCSVCQWIYDPAKGEPMQDVAPGT PWSEVPDNFLCPECSLGKDVFDELASEAK" misc_feature 2806148..2807584 /locus_tag="SF2733" /note="anaerobic nitric oxide reductase flavorubredoxin; Provisional; Region: PRK05452" /db_xref="CDD:235475" gene 2807584..2808717 /gene="ygbD" /locus_tag="SF2734" /db_xref="GeneID:1027452" CDS 2807584..2808717 /gene="ygbD" /locus_tag="SF2734" /note="Code: R; COG: COG0446" /codon_start=1 /transl_table=11 /product="NADH:flavorubredoxin oxidoreductase" /protein_id="NP_708518.1" /db_xref="GeneID:1027452" /translation="MSNGIVIIGSGFAARQLVKNIRKQDATIPLTLIAADSIDEYNKP DLSHVISQGQRADDLTRQTAGEFAGQFNLRLFPHTWVTDIDAEAHVVKSQNNQWQYDK LVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDARRVLIVGGGLIGSELAMDF CRAGKAVTLIDNAASILASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGILA TLDHQRSIEVDAVIAATGLRPETALARRAGLTINRGVCVDSYLQTSNADIYALGDCAE INGQVLPFLQPIQLSGMVLAKNLLGNNTPLKLPAMLVKIKTPELPLHLAGETQRQDLR WQINTERQGMVARGVDDADQLRAFVVSEDRMKEAFVLLKTLPV" misc_feature 2807584..2808714 /gene="ygbD" /locus_tag="SF2734" /note="NADH:flavorubredoxin reductase NorW; Region: PRK04965" /db_xref="CDD:179902" gene complement(2808845..2811097) /gene="hypF" /locus_tag="SF2735" /db_xref="GeneID:1027457" CDS complement(2808845..2811097) /gene="hypF" /locus_tag="SF2735" /note="Code: O; COG: COG0068" /codon_start=1 /transl_table=11 /product="transcriptional regulatory protein" /protein_id="NP_708519.2" /db_xref="GeneID:1027457" /translation="MAKNTSCGVQLRIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGD GVEVRLLEDPETFLVQLHQHCPPLARIDSVEREPFIWSQLPTEFTIRQSTGGTMNTQI VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP ACDKEYRDPLDRRFHAQPVACPECGPHLEWVSHGEHAEQEAALQAAIAQLKMGNIVAI KGIGGFHLACDARNSNAVATLRERKHRPAKPLAVMLPVAESLPDAARQLLTTPAAPIV LVDKKYVPELCDDIAPGLNEVGVMLPANPLQHLLLQELQCPLVMTSGNLSGKPPAISN EQALADLQGIADGFLLHNRDIVQRMDDSVVRESGEMLRRSRGYVPDALVLPPGFKNVP PVLCLGADLKNTFCLVRGEQAVLSQHLGDLSDDGIQMQWREALRLMQNIYDFTPQYIV HDVHPGYVSSQWASEMNLPTQTVLHHHAHAAACLAEHQWPLDGGDVIALTLDGIGMGE NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKQPWRNLLAQCLRFVPEWQNYPE TASVQQQNWSVLARAIERGINAPLASSCGRLFDAVAAALGCAPATLSYEGEAACALEA LAASCDGVTHPVTMPRVDNQLDLATFWQQWLNWQALVNQRAWAFHDALAQGFAALMRE QATMRGITTLVFSGGVIHNRLLRARLAHYLADFTLLFPQSLPAGDGGLSLGQGVIAAA RWLAGEVQNG" misc_feature complement(<2810954..2811073) /gene="hypF" /locus_tag="SF2735" /note="Region: Acylphosphatase; cl00551" /db_xref="CDD:444972" misc_feature complement(2808881..2810974) /gene="hypF" /locus_tag="SF2735" /note="[NiFe] hydrogenase maturation protein HypF; Region: hypF; TIGR00143" /db_xref="CDD:272929" gene complement(2811250..2811777) /gene="hydN" /locus_tag="SF2736" /db_xref="GeneID:1025721" CDS complement(2811250..2811777) /gene="hydN" /locus_tag="SF2736" /note="Code: C; COG: COG1142" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-H ferredoxin subunit" /protein_id="NP_708520.2" /db_xref="GeneID:1025721" /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI HVIKGVNISTATVCRQCEDAPCANVCPNGAISRDKGFVPVMQERCIGCKTCVVACPYG AMEVVVRPVIRNSGAGLNVRADKAEANKCDLCNHREDGPACMAACPTHALICVDRNKL EQLSAEKRRRTALMF" misc_feature complement(2811259..2811777) /gene="hydN" /locus_tag="SF2736" /note="electron transport protein HydN; Region: PRK10330" /db_xref="CDD:182382" gene complement(2811926..2812936) /gene="ascG" /locus_tag="SF2737" /db_xref="GeneID:1027456" CDS complement(2811926..2812936) /gene="ascG" /locus_tag="SF2737" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="ascBF operon repressor" /protein_id="NP_708521.2" /db_xref="GeneID:1027456" /translation="MTTMLEVAKRAGVSKATVSRVLSGNGYVSQETKDRVFQAVEESS YRPNLLARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGKHS AEEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRRLRNNSSHSVW CDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAGYKDALSQHGIALNEKLIA NGKWTPASGAEGVETLLERGAKFSALVASNDDMAIGAIKALHERGVAVPEQVSVIGFD DIAIAPYIVPALSSVKIPVTEMIQEIIGRLIFMLDGGDFSPPKTFSGKLIRRDSLIAL SR" misc_feature complement(2812730..2812933) /gene="ascG" /locus_tag="SF2737" /note="helix_turn _helix lactose operon repressor; Region: HTH_LACI; smart00354" /db_xref="CDD:197675" misc_feature complement(order(2812772..2812777,2812781..2812786, 2812793..2812795,2812802..2812804,2812841..2812843, 2812850..2812855,2812868..2812870,2812877..2812882, 2812886..2812900)) /gene="ascG" /locus_tag="SF2737" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature complement(2812775..2812804) /gene="ascG" /locus_tag="SF2737" /note="domain linker motif [active]" /db_xref="CDD:143331" misc_feature complement(2811950..2812756) /gene="ascG" /locus_tag="SF2737" /note="ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism; Region: PBP1_GalS-like; cd06270" /db_xref="CDD:380494" misc_feature complement(order(2812085..2812090,2812166..2812168, 2812262..2812267,2812589..2812591,2812601..2812603, 2812643..2812645,2812649..2812660,2812685..2812687, 2812694..2812696,2812709..2812711,2812733..2812735, 2812754..2812756)) /gene="ascG" /locus_tag="SF2737" /note="dimer interface (closed form) [polypeptide binding]; other site" /db_xref="CDD:380494" misc_feature complement(order(2812109..2812111,2812193..2812195, 2812271..2812273,2812346..2812348,2812565..2812567, 2812712..2812714)) /gene="ascG" /locus_tag="SF2737" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380494" gene complement(2813079..2814788) /gene="hycE" /locus_tag="SF2738" /db_xref="GeneID:1025709" CDS complement(2813079..2814788) /gene="hycE" /locus_tag="SF2738" /note="Code: C; COG: COG3261" /codon_start=1 /transl_table=11 /product="hydrogenase 3 large subunit" /protein_id="NP_708522.2" /db_xref="GeneID:1025709" /translation="MSEEKLGQHYLAALNEAFLGVVLDHAWQTKDQLTVTVKVNYLPE VVEFLYYKQGGWLSVLFGNDERKLNGHYAVYYVLSMEKGTKCWVTVRVEVDANKPEYP SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL EVERLHPHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR RDLLKDDMIQTRQLAQQMRREVQELVDVLLSTPNMEQRTVGIGRLDPEIARDFSNVGP MVRASGLARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTALNMIDYGLD NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT LRYMLRGNTVSYAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS PLK" misc_feature complement(2813178..2814626) /gene="hycE" /locus_tag="SF2738" /note="Ni,Fe-hydrogenase III large subunit [Energy production and conversion]; Region: HycE2; COG3261" /db_xref="CDD:442492" gene complement(2814806..2815729) /gene="hycD" /locus_tag="SF2739" /db_xref="GeneID:1027458" CDS complement(2814806..2815729) /gene="hycD" /locus_tag="SF2739" /note="Code: C; COG: COG0650" /codon_start=1 /transl_table=11 /product="hydrogenase 3 membrane-spanning protein" /protein_id="NP_708523.1" /db_xref="GeneID:1027458" /translation="MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYR DIIKLLGRQSVGPDASGWMFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLY LFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNI TDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFG VMKWGISLKQLVVLQMFVGVFIPWGQMETFTVGGLLLALVIAIVKLVVGVLVIALFEN SMARLRLDITPRITWAGFGFAFLAFVSLLAA" misc_feature complement(2814815..2815729) /gene="hycD" /locus_tag="SF2739" /note="Formate hydrogenlyase subunit HyfC [Energy production and conversion]; Region: HyfC; COG0650" /db_xref="CDD:440415" gene complement(2815732..2817549) /gene="hycC" /locus_tag="SF2740" /db_xref="GeneID:1027451" CDS complement(2815732..2817549) /gene="hycC" /locus_tag="SF2740" /note="Code: CP; COG: COG0651" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase subunit 3" /protein_id="NP_708524.2" /db_xref="GeneID:1027451" /translation="MSPPLFWHFSFQKALSGWIAGIGGAVGSLYTAAAGFTVLTGAVG VSGALSLVSYDVQISPLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQINMLMAA AVCAVIASNLGMFVVMAEVMALCAVFLTSNSKEGKLWFALRRLGTLLLVIACWLLWQR YGTLDLRLLDMRMQQLPLGSDIWLLGVIGFGLLAGIIPLHGWVPQAHANASAPAAALF STVVMKIGLLGMLTLSLLGGNAPLWWGIALLVLGMITAFVGGLYALMEHNIQRLLAYH TLENIGIILLGLGLGLGLGLGLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKS VLFLGAGSVWFRTGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIY QSFFKLSNSGAFVARLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAENATC APLLMSVSVVALAICCVIGGVAAPWLLPMLSAAVPLPLEPANTTVSQPMITLLLIACP LLPFIIMAICKGDRLPSRSRGAAWVCGYDHEKSMVITAHGFAMPVKQAFAPVLKLRKW LNPVSLVPGWQCEGSALLFRRMALVELAVLVVIIVSRGA" misc_feature complement(2815735..2817549) /gene="hycC" /locus_tag="SF2740" /note="formate hydrogenlyase subunit 3; Reviewed; Region: PRK08042" /db_xref="CDD:181206" gene complement(2817586..2818197) /gene="hycB" /locus_tag="SF2741" /db_xref="GeneID:1025711" CDS complement(2817586..2818197) /gene="hycB" /locus_tag="SF2741" /note="Code: C; COG: COG1142" /codon_start=1 /transl_table=11 /product="hydrogenase-3 iron-sulfur protein" /protein_id="NP_708525.1" /db_xref="GeneID:1025711" /translation="MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLRVMLNEK ESAPQLCHHCEDAPCAVVCPVNAITRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGS RPLDIPANANTPKAPPAPPAPARVSTLLDWVPGIRAIAVKCDLCSFDEQGPACVRMCP TKALHLVDNTDIARVSKRKRELTFNTDFGDLTLFQQAQSGEAK" misc_feature complement(2817697..2818188) /gene="hycB" /locus_tag="SF2741" /note="HycB, HydN and similar proteins; Region: HycB_like; cd10554" /db_xref="CDD:319876" gene complement(2818322..2818783) /gene="hycA" /locus_tag="SF2742" /db_xref="GeneID:1025724" CDS complement(2818322..2818783) /gene="hycA" /locus_tag="SF2742" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase regulatory protein HycA" /protein_id="NP_708526.1" /db_xref="GeneID:1025724" /translation="MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHH AMSCAPDKELCFVLFEHFRIYVTLADGFNSHTIEYYVETKDGEDKQRIAQAQLSIDGM IDGKVNIRDREQVLEHYLEKIAGVYDSLYTAIENNVPVNLSQLVKGQSPAA" misc_feature complement(2818328..2818783) /gene="hycA" /locus_tag="SF2742" /note="formate hydrogenlyase regulator HycA; Region: PRK10198" /db_xref="CDD:182298" gene 2818983..2819345 /gene="hypA" /locus_tag="SF2743" /db_xref="GeneID:1025706" CDS 2818983..2819345 /gene="hypA" /locus_tag="SF2743" /note="Code: R; COG: COG0375" /codon_start=1 /transl_table=11 /product="hydrogenase nickel incorporation protein" /protein_id="NP_708527.1" /db_xref="GeneID:1025706" /translation="MGGDMHEITLCQRALELIEQQAAKHGAKRVTGVWLKIGAFSCVE TSSLAFCFDLVCRGSVAEGCKLHLEEQEAECWCETCQQYVTLLTQRVRRCPQCHGDML QIVADDGLQIRRIEIDQE" misc_feature 2818995..2819336 /gene="hypA" /locus_tag="SF2743" /note="hydrogenase/urease nickel incorporation protein HypA; Region: hypA; PRK03681" /db_xref="CDD:179630" gene 2819349..2820221 /gene="hypB" /locus_tag="SF2744" /db_xref="GeneID:1027419" CDS 2819349..2820221 /gene="hypB" /locus_tag="SF2744" /note="Code: OK; COG: COG0378" /codon_start=1 /transl_table=11 /product="hydrogenase nickel incorporation protein HypB" /protein_id="NP_708528.1" /db_xref="GeneID:1027419" /translation="MCTTCGCGEGNLYIEGDEHNPHSAFRSAPFAPAARPQMKITGIK APEFTPSQTEEGDLHYGHGEAGTHTPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR KQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARIRATGTPAIQV NTGKGCHLDAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEG MDQWLNWLETQRCA" misc_feature 2819349..2820218 /gene="hypB" /locus_tag="SF2744" /note="hydrogenase nickel incorporation protein HypB; Provisional; Region: PRK10463" /db_xref="CDD:182479" misc_feature order(2819682..2819705,2819784..2819786,2819793..2819795, 2819919..2819921,2819928..2819930,2820060..2820065, 2820069..2820074,2820156..2820164) /gene="hypB" /locus_tag="SF2744" /note="active site" /db_xref="CDD:349775" misc_feature order(2819682..2819690,2819766..2819774,2819781..2819786, 2819844..2819846,2819931..2819933,2819937..2819942, 2819949..2819951,2819994..2819999,2820015..2820020, 2820063..2820065,2820072..2820074,2820081..2820086, 2820162..2820164) /gene="hypB" /locus_tag="SF2744" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349775" misc_feature order(2819844..2819849,2819940..2819942) /gene="hypB" /locus_tag="SF2744" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:349775" gene 2820212..2820484 /gene="hypC" /locus_tag="SF2745" /db_xref="GeneID:1023542" CDS 2820212..2820484 /gene="hypC" /locus_tag="SF2745" /note="Code: O; COG: COG0298" /codon_start=1 /transl_table=11 /product="hydrogenase assembly chaperone" /protein_id="NP_708529.1" /db_xref="GeneID:1023542" /translation="MCIGVPGQIRTIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRV GQWVLVHVGFAMSVINEAEARDTLDALQNMFDVEPDVGALLYGEEK" misc_feature 2820212..2820481 /gene="hypC" /locus_tag="SF2745" /note="HypC/HybG/HupF family hydrogenase formation chaperone; Region: PRK10409" /db_xref="CDD:182435" gene 2820484..2821605 /gene="hypD" /locus_tag="SF2746" /db_xref="GeneID:1027421" CDS 2820484..2821605 /gene="hypD" /locus_tag="SF2746" /note="Code: O; COG: COG0409" /codon_start=1 /transl_table=11 /product="hydrogenase isoenzymes formation protein HypD" /protein_id="NP_708530.1" /db_xref="GeneID:1027421" /translation="MRFVDEYRAPEQVMQLIEHLRERASHLSYTAERPLRIMEVCGGH THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDTCVEIASHPEVIFCTFGDAMRV PGKQGSLLQAKARGADVRIVYSPMDALKLAQENPTRKVVFFGLGFETTMPTTAITLQQ AKARDVQNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTDAYNFIASDF HRPLVVAGFEPLDLLQGVVMLVEQKIAAHSKVENQYRRVVPDAGNLLAQQAIADVFCV NGDSEWRGLGVIESSGVHLTPDYQRFDAEAHFRPAPQQVCDDPRARCGEVLTGKCKPH QCPLFGNTCNPQTAFGALMVSSEGACAAWYQYRQQESEA" misc_feature 2820487..2821590 /gene="hypD" /locus_tag="SF2746" /note="hydrogenase expression/formation protein HypD; Region: hypD; TIGR00075" /db_xref="CDD:272892" gene 2821644..2822612 /gene="hypE" /locus_tag="SF2747" /db_xref="GeneID:1026811" CDS 2821644..2822612 /gene="hypE" /locus_tag="SF2747" /note="Code: O; COG: COG0309" /codon_start=1 /transl_table=11 /product="hydrogenase expression/formation protein HypE" /protein_id="NP_708531.2" /db_xref="GeneID:1026811" /translation="MQQLINSLFMEAFANPWLAEQEDQARLDLAQLVAEGDRLAFSTD SYVIDPLFFPGGNIGKLAICGTANDVAGSGAIPRYLSCGFILEEGLPMETLKAVVTSM AETARTAGIAIVTGDTKVVQRGAADKLFINTAGMGAIPANIHWGAQTLTAGDVLLVSG TLGDHGATILNLREQLGLDGELVSDCAVLTPLIQTLRDIPGVKALRDATRGGVNAVVH EFAAACGCGIEISESALPVKPAVRGVCELLGLDALNFANEGKLVIAVERNAAEQVLAA LHSHPLGKDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPRIC" misc_feature 2821644..2822609 /gene="hypE" /locus_tag="SF2747" /note="hydrogenase expression/formation protein HypE; Region: hypE; TIGR02124" /db_xref="CDD:273984" gene 2822686..2824764 /gene="fhlA" /locus_tag="SF2748" /db_xref="GeneID:1025757" CDS 2822686..2824764 /gene="fhlA" /locus_tag="SF2748" /note="Code: T; COG: COG3604" /codon_start=1 /transl_table=11 /product="formate hydrogenlyase transcriptional activator FhlA" /protein_id="NP_708532.2" /db_xref="GeneID:1025757" /translation="MSYTPMSDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALA DNAAIVLWQAQTQRASYYASREKDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFC ETWPQLAAGGLYPKFGHYCLMPLAAGGHIFGGCEFIRYDERPWSEKEFNRLQTFTQIV SVVTEQIQSRVVNNVDYELLCRERDNFRILVAITNAVLSRLDMDELVSEVAKEIHYYF DIDDISIVLRSHRKNKLNIYSTHYLDKQHPAHEQSEVDEAGTLTERVFKSKEMLLINL YERDDLAPYERMLFDTWGNQIQTLCLLPLMSGDTMLGVLKLAQCEEKVFTTTNLNLLR QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVL KQVEMVAQSDSTVLILGETGSGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDL FGHERGAFTGANAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN KIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLAKAF TFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLTRGNVLQLSLPDI ALPEPETPPAATVVAQEGEDEYQLIVRVLKETNSVVAGPKGAAQRLGLKRTTLLSRMK RLGIDKSALI" misc_feature 2822695..2824752 /gene="fhlA" /locus_tag="SF2748" /note="formate hydrogenlyase transcriptional activator FlhA; Region: PRK15429" /db_xref="CDD:237965" gene complement(2824801..2825154) /gene="ygbA" /locus_tag="SF2749" /db_xref="GeneID:1027403" CDS complement(2824801..2825154) /gene="ygbA" /locus_tag="SF2749" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708533.1" /db_xref="GeneID:1027403" /translation="MSGKRISREKLTIKKMIDLYQAKCPQASAEPEHYEALFVYAQKR LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPILTVRHLIDDKRP VPELPEKYRPKKPRE" misc_feature complement(2824831..2825145) /gene="ygbA" /locus_tag="SF2749" /note="Nitrous oxide-stimulated promoter; Region: YgbA_NO; pfam11756" /db_xref="CDD:432053" mobile_element complement(2825202..2825969) /mobile_element_type="insertion sequence:IS1" gene complement(2825217..2825720) /gene="insB" /locus_tag="SF2750" /db_xref="GeneID:1025720" CDS complement(2825217..2825720) /gene="insB" /locus_tag="SF2750" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708534.1" /db_xref="GeneID:1025720" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature complement(2825220..2825612) /gene="insB" /locus_tag="SF2750" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2825948..2826142) /locus_tag="SF2752a" /db_xref="GeneID:16608351" CDS complement(2825948..2826142) /locus_tag="SF2752a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439274.1" /db_xref="GeneID:16608351" /translation="MIPELIISGEEANGEFLMLVPGKMLFCSFCVMLMKQVRKIVSIG EPFFFRVIVPFKIKVMLPTY" gene 2826218..2828779 /gene="mutS" /locus_tag="SF2752" /db_xref="GeneID:1027453" CDS 2826218..2828779 /gene="mutS" /locus_tag="SF2752" /note="Code: L; COG: COG0249" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein MutS" /protein_id="NP_708536.1" /db_xref="GeneID:1027453" /translation="MSAIENFDAHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDA KRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQGESVAICEQIGDPATS KGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDSKGFGYATLDISSGRFRLSEP ADRETMAAELQRSNPAELLYAEDFAEMSLIEGRRGLRRRPLWEFEIDTARQQLNLQFG TRDLVGFGVENAPRGLCAAGCLLQYAKDTQRTTLPHIRSITMEREQDSIIMDAATRRN LEITQNLAGGAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQDF TAELQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELRAQLETVDSAPVQA LREKMGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERL EVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKE YEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLN YTCPTFIDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKSTYM RQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILH NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKME GVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES ISPNAAATQVDGTQMSLLSVPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV" misc_feature 2826224..2828776 /gene="mutS" /locus_tag="SF2752" /note="DNA mismatch repair protein MutS; Provisional; Region: PRK05399" /db_xref="CDD:235444" gene 2828885..2829537 /gene="pphB" /locus_tag="SF2753" /pseudo /db_xref="GeneID:1025705" misc_feature 2828885..2829537 /gene="pphB" /locus_tag="SF2753" /note="Similar to Escherichia coli K12 protein phosphatase 2 gi: 1789090 (219 aa). BLAST with identity of 95% in 218 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(2829588..2830385) /gene="ygbI" /locus_tag="SF2754" /db_xref="GeneID:1025726" CDS complement(2829588..2830385) /gene="ygbI" /locus_tag="SF2754" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_708537.1" /db_xref="GeneID:1025726" /translation="MSAGQRKEQKLIPVERRQIILEMVAEKGIVSIAELTDRINVSHM TIRRDLQKLEQQGAVVLVSGGVQSPGRVAHEPSHQVKTALAMTQKAAIGKLAASLVLP GSCIYLDAGTTTLAIAQHLIHMESLTVVTNDFVIANYLLDNSNCTIIHTGGAVCRENR SCVGEAAATMLCSLMIDQAFISASSWSVRGISTPAEDKVTVKRAIASASRQRVLVCDA TKYGQVATWLALPLSEFDQIITDDGLPESASRALAKQDLSLLVAKNE" misc_feature complement(2829597..2830355) /gene="ygbI" /locus_tag="SF2754" /note="DNA-binding transcriptional repressor YgbI; Region: trans_reg_YgbI; NF040890" /db_xref="CDD:468826" gene 2830551..2831459 /locus_tag="SF2755" /pseudo /db_xref="GeneID:1025381" misc_feature 2830551..2831459 /locus_tag="SF2755" /note="Similar to Escherichia coli K12 dehydrogenase gi: 1789092 (303 aa). BLAST with identity of 99% in 303 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo mobile_element 2831677..2832940 /mobile_element_type="insertion sequence:IS600" gene 2831741..2832043 /locus_tag="SF2756" /db_xref="GeneID:1025725" CDS 2831741..2832043 /locus_tag="SF2756" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_708538.1" /db_xref="GeneID:1025725" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 2831741..2832013 /locus_tag="SF2756" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2832079..2832897 /locus_tag="SF2757" /db_xref="GeneID:1025763" CDS 2832079..2832897 /locus_tag="SF2757" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_708539.1" /db_xref="GeneID:1025763" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVVPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA" misc_feature <2832079..2832870 /locus_tag="SF2757" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(2833131..2835227) /locus_tag="SF2758" /db_xref="GeneID:1025756" CDS complement(2833131..2835227) /locus_tag="SF2758" /note="Code: L; COG: COG1425" /codon_start=1 /transl_table=11 /product="phage transposase" /protein_id="NP_708540.2" /db_xref="GeneID:1025756" /translation="MQSYVTVNDLLGVPGMPATTKGIRQALQRFSRDLGDVSRRREGT KAIEYHIDCLPEITRKALRERYVEQLVATENNVSEVKAVTRKTRNPDAVQAIEAYRGS PQLMEERLNALTENQRWVSEARAALVVEVLKLESAGNPGRLKAINFLVEKARKGELPE RLQQAAVNANAKRGANRTISRDPLYQWVLKYNQSQNAAERLLLLAPGKRDEIKPEEIS WLPEFLAQYRQVNGRPMSEAYEDFVAEWQRRHADEPYMLEVMPSYDVVRYAMKKLPEV VKQKGRVTGSEYRQLEGFTRRDWTAMPVNYVWIGDGHGMKLKCAHPIHGRPFSPEVTF VIDGGTRFVVGWSLDLAENVFAVAGAIQHGIRNHGKPFLYYSDNGSGETADMLDKEVV GILPRLGIKHPTGIAGNPQGRGIIERLNRTLPMRIARRYRTYFGKGADRESLRVLNRD LRSAFNALQQDKPLNDRQKAAMRELPSWAELIEAIREGVEWYNNRPHSELPMKPNGRH YSPTEFRKKRQAEEDTEIEWLSDLELRDMFRPMVERPVRRCEIQWLNNIYYAPELRDE HGRKVLISYDIHDAERITVRRKDGSFICEAIWNGNKRAAFAVSAEYHKQQQRIKGMRK RAEEKIRDAEDEGIQILEHKQAEPWLSNVYRPVGNVVAVQQPEYEEEHDEEFERDFRL GMQKLFAMQEEDDPLA" misc_feature complement(2834757..2835200) /locus_tag="SF2758" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:470628" misc_feature complement(2833665..>2834444) /locus_tag="SF2758" /note="Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; Region: Tra5; COG2801" /db_xref="CDD:442053" misc_feature complement(2833443..2833625) /locus_tag="SF2758" /note="Mu transposase, C-terminal; Region: Mu-transpos_C; pfam09299" /db_xref="CDD:430512" gene complement(2835229..2835480) /locus_tag="SF2759" /db_xref="GeneID:1027441" CDS complement(2835229..2835480) /locus_tag="SF2759" /note="Code: K; COG: COG3423" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="NP_708541.1" /db_xref="GeneID:1027441" /translation="MRQREDSDRDWPSLKIQLALKDNGWSSFRELSLHAGYAQDSLKA VVRTPNKKYERVISDAIGVPPEIIWPSRYRNDGFIRKAS" misc_feature complement(2835259..2835465) /locus_tag="SF2759" /note="Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription]; Region: SfsB; COG3423" /db_xref="CDD:442649" gene 2835645..2836208 /locus_tag="SF2760" /db_xref="GeneID:1025718" CDS 2835645..2836208 /locus_tag="SF2760" /codon_start=1 /transl_table=11 /product="regulatory protein" /protein_id="NP_708542.1" /db_xref="GeneID:1025718" /translation="MRKAPQGSFPADGKEPIIERIFRLVERYPSRNAAARAWGINEGT LKNYYNRRDYAPIPRPYQLKKIAESENVTLEWLMTGEGDVELKDSKEPKKENADNVDA QILMFLSFLKPQEKQQVADVLGRKGAEQLLILLDEHIQELHALVGVRRAIALSLGNLP DEKVREIYALSEAKGDHLNLPQKAASA" misc_feature 2835699..2835893 /locus_tag="SF2760" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cl22854" /db_xref="CDD:473980" gene complement(2836385..2837428) /locus_tag="SF2761" /pseudogene="unknown" /db_xref="GeneID:1027420" gene complement(2837428..2838021) /gene="padI" /locus_tag="SF2762" /db_xref="GeneID:1027443" CDS complement(2837428..2838021) /gene="padI" /locus_tag="SF2762" /note="Code: H; COG: COG0163" /codon_start=1 /transl_table=11 /product="phenylacrylic acid decarboxylase-like protein" /protein_id="NP_708544.1" /db_xref="GeneID:1027443" /translation="MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIE LETPYSARDVAALADFSHNPADQAAIISSGSFRTDGMIVIPCSMKTLAGIRAGYADGL VGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDD IVHHVVARVLDQFGLEHPHARRWQGLPQARNFSQENE" misc_feature complement(2837467..2838018) /gene="padI" /locus_tag="SF2762" /note="non-oxidative hydroxyarylic acid decarboxylases subunit B; Region: VdcB; NF041206" /db_xref="CDD:469110" gene 2838168..2838575 /locus_tag="SF2763" /db_xref="GeneID:1026814" CDS 2838168..2838575 /locus_tag="SF2763" /note="Code: K; COG: COG1846" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_708545.1" /db_xref="GeneID:1026814" /translation="MALRNKAFHQLRQLFQQHTARWQHELPDLTKPQYAVMRAIADKP GIEQVALIEAAVSTKATLAEMLARMENRGLVRREHDVADKRRRFVWLTAEGEKLLAAA IPIGDSVDEEFLGRLSGEEQELFMQLVRKMMST" misc_feature 2838189..2838566 /locus_tag="SF2763" /note="DNA-binding transcriptional regulator, MarR family [Transcription]; Region: MarR; COG1846" /db_xref="CDD:441451" gene complement(2838695..2839723) /locus_tag="SF2764" /db_xref="GeneID:1027440" CDS complement(2838695..2839723) /locus_tag="SF2764" /note="Code: K; COG: COG0568" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor RpoS" /protein_id="NP_708546.1" /db_xref="GeneID:1027440" /translation="MFRQGITGRSHLMSQNTLKVHDLNEDAEFDENGVEVFDEKALVE EEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVAS RRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATW WIRQTIERAIMNQTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPV DDVSRMLRLNERITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLF ELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGL NIEALFRK" misc_feature complement(2838704..2839678) /locus_tag="SF2764" /note="RNA polymerase sigma factor RpoS; Validated; Region: PRK05657" /db_xref="CDD:235548" gene complement(2839750..2840889) /gene="nlpD" /locus_tag="SF2765" /db_xref="GeneID:1025716" CDS complement(2839750..2840889) /gene="nlpD" /locus_tag="SF2765" /note="Code: M; COG: COG0739" /codon_start=1 /transl_table=11 /product="lipoprotein NlpD" /protein_id="NP_708547.2" /db_xref="GeneID:1025716" /translation="MSAGSPKFTVRRIAALSLVSLWLAGCSDTSNPPAPVSSVNGNAP ANTNSGMLITPPPKMGTTSTAQQPQIQPVQQPQIQATQQPQIQPVQPVAQQPVQMENG RIVYNRQYGNIPKGSYSGSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVG QTLQVGNASGTPITGGNAITQADAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSA NKMLPNNKPTATTVTAPVTVPTASTTEPTVSSTSTSTPISTWRWPTEGKVIETFGASE GGNKGIDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLV REQQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR" misc_feature complement(2839753..2840889) /gene="nlpD" /locus_tag="SF2765" /note="murein hydrolase activator NlpD; Region: nlpD; PRK10871" /db_xref="CDD:236782" gene complement(2841029..2841655) /gene="pcm" /locus_tag="SF2766" /db_xref="GeneID:1025767" CDS complement(2841029..2841655) /gene="pcm" /locus_tag="SF2766" /note="Code: O; COG: COG2518" /codon_start=1 /transl_table=11 /product="protein-L-isoaspartate O-methyltransferase" /protein_id="NP_708548.1" /db_xref="GeneID:1025767" /translation="MVSRRVQALLDQLRAQGIQDEQVLNALAAVPREKFVDEAFEQKA WDNIALPIGQGQTISQPYMVARMTELLELTPQSRVLETGTGSGYQTAILAHLVQHVCS VERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMT QLDEGGILVLPVGEEHQYLKRVRRRGGEFIIDTVEAVRFVPLVKGELA" misc_feature complement(2841032..2841655) /gene="pcm" /locus_tag="SF2766" /note="protein-L-isoaspartate(D-aspartate) O-methyltransferase; Region: pcm; PRK00312" /db_xref="CDD:178974" misc_feature complement(order(2841212..2841214,2841260..2841268, 2841341..2841346,2841392..2841412)) /gene="pcm" /locus_tag="SF2766" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(2841649..2842410) /gene="surE" /locus_tag="SF2767" /db_xref="GeneID:1025770" CDS complement(2841649..2842410) /gene="surE" /locus_tag="SF2767" /note="Code: R; COG: COG0496" /codon_start=1 /transl_table=11 /product="5'/3'-nucleotidase SurE" /protein_id="NP_708549.2" /db_xref="GeneID:1025770" /translation="MRILLSNYDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS LTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI YSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINV QDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVD EGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW" misc_feature complement(2841676..2842410) /gene="surE" /locus_tag="SF2767" /note="5'(3')-nucleotidase/polyphosphatase; Provisional; Region: surE; PRK00346" /db_xref="CDD:234732" gene complement(2842391..2843440) /gene="truD" /locus_tag="SF2768" /db_xref="GeneID:1027447" CDS complement(2842391..2843440) /gene="truD" /locus_tag="SF2768" /note="Code: S; COG: COG0585" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase D" /protein_id="NP_708550.1" /db_xref="GeneID:1027447" /translation="MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHI LVRILKNGCNTRFVADALAKFLKIHSREVSFAGQKDKHAVTEQWLCARVPGKEMPDLS AFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYF GAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQ VVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQ AAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVV RELINTTGDYAHIAE" misc_feature complement(2842418..2843440) /gene="truD" /locus_tag="SF2768" /note="tRNA pseudouridine synthase D; Reviewed; Region: truD; PRK00984" /db_xref="CDD:234884" misc_feature complement(2843342..2843362) /gene="truD" /locus_tag="SF2768" /note="Permutation of conserved domain. [active]" /db_xref="CDD:211340" misc_feature complement(2843201..2843212) /gene="truD" /locus_tag="SF2768" /note="active site" /db_xref="CDD:211340" gene complement(2843437..2843916) /gene="ispF" /locus_tag="SF2769" /db_xref="GeneID:1024297" CDS complement(2843437..2843916) /gene="ispF" /locus_tag="SF2769" /note="Code: I; COG: COG0245" /codon_start=1 /transl_table=11 /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase" /protein_id="NP_708551.1" /db_xref="GeneID:1024297" /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL TDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA PKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK" misc_feature complement(2843452..2843916) /gene="ispF" /locus_tag="SF2769" /note="YgbB family; Region: YgbB; pfam02542" /db_xref="CDD:460584" gene complement(2843916..2844626) /gene="ispD" /locus_tag="SF2770" /db_xref="GeneID:1025758" CDS complement(2843916..2844626) /gene="ispD" /locus_tag="SF2770" /note="Code: I; COG: COG1211" /codon_start=1 /transl_table=11 /product="2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase" /protein_id="NP_708552.1" /db_xref="GeneID:1025758" /translation="MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHA LLAHPRVTRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDVQWV LVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGL WHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPE DLALAEFYLTRTIHQENT" misc_feature complement(2843931..2844605) /gene="ispD" /locus_tag="SF2770" /note="D-ribitol-5-phosphate cytidylyltransferase; Region: ispD; PRK00155" /db_xref="CDD:234670" misc_feature complement(order(2843988..2843990,2844303..2844311, 2844363..2844365,2844372..2844383,2844546..2844548, 2844567..2844584,2844588..2844590)) /gene="ispD" /locus_tag="SF2770" /note="substrate binding site [active]" /db_xref="CDD:133009" misc_feature complement(order(2844000..2844005,2844015..2844026, 2844039..2844041,2844048..2844053,2844057..2844062, 2844138..2844155,2844210..2844212,2844216..2844218, 2844240..2844242,2844300..2844302)) /gene="ispD" /locus_tag="SF2770" /note="dimer interface [active]" /db_xref="CDD:133009" gene complement(2844645..2844956) /gene="ftsB" /locus_tag="SF2771" /db_xref="GeneID:1025759" CDS complement(2844645..2844956) /gene="ftsB" /locus_tag="SF2771" /note="Code: O; COG: COG2919" /codon_start=1 /transl_table=11 /product="cell division protein FtsB" /protein_id="NP_708553.1" /db_xref="GeneID:1025759" /translation="MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAALQATNA KLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNN R" misc_feature complement(2844648..2844911) /gene="ftsB" /locus_tag="SF2771" /note="cell division protein FtsB; Reviewed; Region: ftsB; PRK00888" /db_xref="CDD:179156" gene complement(2845150..2845473) /gene="ygbE" /locus_tag="SF2772" /db_xref="GeneID:1025768" CDS complement(2845150..2845473) /gene="ygbE" /locus_tag="SF2772" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708554.1" /db_xref="GeneID:1025768" /translation="MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPML IYGSNTLFFFLYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALF MWLLG" misc_feature complement(2845153..2845473) /gene="ygbE" /locus_tag="SF2772" /note="Protein of unknown function (DUF3561); Region: DUF3561; pfam12084" /db_xref="CDD:432318" gene complement(2845523..2846128) /gene="cysC" /locus_tag="SF2773" /db_xref="GeneID:1026815" CDS complement(2845523..2846128) /gene="cysC" /locus_tag="SF2773" /note="Code: P; COG: COG0529" /codon_start=1 /transl_table=11 /product="adenylyl-sulfate kinase" /protein_id="NP_708555.1" /db_xref="GeneID:1026815" /translation="MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTV AGALEEALHKLSVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLV VLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFT GIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS" misc_feature complement(2845526..2846116) /gene="cysC" /locus_tag="SF2773" /note="adenylylsulfate kinase; Provisional; Region: PRK03846" /db_xref="CDD:179661" misc_feature complement(order(2845649..2845654,2845703..2845705, 2845799..2845807,2845874..2845876,2845883..2845885, 2845898..2845900,2845925..2845927,2846000..2846011, 2846015..2846020)) /gene="cysC" /locus_tag="SF2773" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:238985" gene complement(2846128..2847555) /gene="cysN" /locus_tag="SF2774" /db_xref="GeneID:1027446" CDS complement(2846128..2847555) /gene="cysN" /locus_tag="SF2774" /note="Code: P; COG: COG2895" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase" /protein_id="NP_708556.1" /db_xref="GeneID:1027446" /translation="MNTVLAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI GRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF STEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGI KHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSE SMPWYSGLTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGMLASGRVEVGQ RVKVLPSGVESNVARIVTFDGDREEVFAGEAITLVLTDEIDISRGDLLLAADEALPAV QSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNG IGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAASSEFSA FELELNALVRRHFPHWGARDLLGDK" misc_feature complement(2846137..2847555) /gene="cysN" /locus_tag="SF2774" /note="sulfate adenylyltransferase subunit 1; Provisional; Region: cysN; PRK05124" /db_xref="CDD:235349" gene complement(2847557..2848465) /gene="cysD" /locus_tag="SF2775" /db_xref="GeneID:1025766" CDS complement(2847557..2848465) /gene="cysD" /locus_tag="SF2775" /note="Code: EH; COG: COG0175" /codon_start=1 /transl_table=11 /product="sulfate adenylyltransferase" /protein_id="NP_708557.1" /db_xref="GeneID:1025766" /translation="MAQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVML HLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINP FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP KNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE RDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVST TSERQGRVIDRDQAGSMELKKRQGYF" misc_feature complement(2847560..2848465) /gene="cysD" /locus_tag="SF2775" /note="sulfate adenylyltransferase subunit CysD; Region: PRK05253" /db_xref="CDD:235375" gene 2848717..2849754 /gene="iap" /locus_tag="SF2776" /db_xref="GeneID:1027424" CDS 2848717..2849754 /gene="iap" /locus_tag="SF2776" /note="Code: R; COG: COG2234" /codon_start=1 /transl_table=11 /product="alkaline phosphatase" /protein_id="NP_708558.1" /db_xref="GeneID:1027424" /translation="MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFF PGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIA AHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGIDDNAAGLGVMLELAERLKN TPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGV KTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSV EATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIM LPLVKELAKAS" misc_feature 2848717..2849751 /gene="iap" /locus_tag="SF2776" /note="alkaline phosphatase isozyme conversion aminopeptidase; Provisional; Region: PRK10199" /db_xref="CDD:182299" gene complement(2849840..2850850) /locus_tag="SF2777" /db_xref="GeneID:1027445" CDS complement(2849840..2850850) /locus_tag="SF2777" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708559.1" /db_xref="GeneID:1027445" /translation="MGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKF ARSFQQLYLPPEFKIQEGARKNYEKISHSTLGYWLWNHYLSECQELLPSSSLSPRKLR RVIEMWMPVTTGHHGRPPDRMDELDNFLPEDKAAARDFLLEIKPLFPRIEIPTFWDDD EGVELIKQLSWYISATVVLADWTGSSTRFFPRVAQAMDIEDYWQKALVQAQNALTVFP PQAETAPFTGINTLFPFIENTTPLQQKVLDLDINQPGPQLFILEDVTGAGKTEAALIL AHRLMAAGNAQGLFFGLPTMATANAMYDRLVKTWLAFYSPEVFPAPAEINRRNTVRFS RK" misc_feature complement(<2849933..2850763) /locus_tag="SF2777" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" gene complement(2851185..2851337) /locus_tag="SF2777a" /db_xref="GeneID:16608352" CDS complement(2851185..2851337) /locus_tag="SF2777a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439275.1" /db_xref="GeneID:16608352" /translation="MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVL AYESKK" misc_feature complement(2851200..2851322) /locus_tag="SF2777a" /note="Hok/gef family; Region: HOK_GEF; cl27487" /db_xref="CDD:452751" gene complement(2851601..2852335) /gene="cysH" /locus_tag="SF2778" /db_xref="GeneID:1027439" CDS complement(2851601..2852335) /gene="cysH" /locus_tag="SF2778" /note="Code: EH; COG: COG0175" /codon_start=1 /transl_table=11 /product="phosphoadenosine phosphosulfate reductase" /protein_id="NP_708560.2" /db_xref="GeneID:1027439" /translation="MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNL PGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLK VYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQ SGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTT RKWEPGMAEEETRFFGLKRECGLHEG" misc_feature complement(2851604..2852320) /gene="cysH" /locus_tag="SF2778" /note="phosphoadenylyl-sulfate reductase; Region: PRK02090" /db_xref="CDD:234997" gene complement(2852409..2854121) /gene="cysI" /locus_tag="SF2779" /db_xref="GeneID:1027406" CDS complement(2852409..2854121) /gene="cysI" /locus_tag="SF2779" /note="Code: P; COG: COG0155" /codon_start=1 /transl_table=11 /product="sulfite reductase subunit beta" /protein_id="NP_708561.1" /db_xref="GeneID:1027406" /translation="MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGF KGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKF AGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN PYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPI RPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRI TANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERF LPSFIDNIDNLMVKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGN RIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR DLWD" misc_feature complement(2852415..2854109) /gene="cysI" /locus_tag="SF2779" /note="NADPH-dependent assimilatory sulfite reductase hemoprotein subunit; Region: PRK13504" /db_xref="CDD:237402" gene complement(2854121..2855920) /gene="cysJ" /locus_tag="SF2780" /db_xref="GeneID:1027405" CDS complement(2854121..2855920) /gene="cysJ" /locus_tag="SF2780" /note="Code: P; COG: COG0369" /codon_start=1 /transl_table=11 /product="sulfite reductase subunit alpha" /protein_id="NP_708562.1" /db_xref="GeneID:1027405" /translation="MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVL NQQPVALAVTPAPAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYK FKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEF FCQSGKDFDSKLAELGGERLLDRVDSDVEYQAAASEWRARVVDALKSRAPVAAPSQSV ATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL GVWYQNDPALVKELVELLWLTGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYAT LTRSETLLPLVGDKAKLQHYAATTLIVDMVRFSPAQLDAEALINLLRPLTPRLYSIAS SQAEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN LETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKE GVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQAL LEVIAEFGGMDTEAADEFLSELRVERRYQRDVY" misc_feature complement(2854124..2855920) /gene="cysJ" /locus_tag="SF2780" /note="NADPH-dependent assimilatory sulfite reductase flavoprotein subunit; Region: cysJ; PRK10953" /db_xref="CDD:182862" misc_feature complement(order(2854655..2854666,2854703..2854705, 2854709..2854711,2854754..2854765,2855096..2855098)) /gene="cysJ" /locus_tag="SF2780" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99796" misc_feature complement(order(2854754..2854759,2854763..2854765)) /gene="cysJ" /locus_tag="SF2780" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99796" misc_feature complement(order(2854124..2854126,2854130..2854132, 2854265..2854267,2854754..2854756)) /gene="cysJ" /locus_tag="SF2780" /note="catalytic residues [active]" /db_xref="CDD:99796" misc_feature complement(order(2854247..2854249,2854334..2854336, 2854340..2854342,2854361..2854366,2854451..2854456, 2854535..2854537,2854541..2854543,2854694..2854705)) /gene="cysJ" /locus_tag="SF2780" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99796" misc_feature complement(order(2854646..2854648,2854655..2854657, 2854664..2854666)) /gene="cysJ" /locus_tag="SF2780" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99796" misc_feature complement(order(2854523..2854525,2854529..2854540, 2854550..2854552)) /gene="cysJ" /locus_tag="SF2780" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99796" gene 2856239..2856601 /gene="ygcM" /locus_tag="SF2781" /db_xref="GeneID:1025773" CDS 2856239..2856601 /gene="ygcM" /locus_tag="SF2781" /note="Code: H; COG: COG0720" /codon_start=1 /transl_table=11 /product="6-carboxytetrahydropterin synthase QueD" /protein_id="NP_708563.2" /db_xref="GeneID:1025773" /translation="MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEV DPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLL SAVMVKETCTAGCIYRGE" misc_feature 2856242..2856598 /gene="ygcM" /locus_tag="SF2781" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA), GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:469697" misc_feature order(2856326..2856328,2856332..2856334,2856563..2856565, 2856581..2856583) /gene="ygcM" /locus_tag="SF2781" /note="active site" /db_xref="CDD:238351" gene 2856649..2857950 /gene="ygcN" /locus_tag="SF2782" /db_xref="GeneID:1025764" CDS 2856649..2857950 /gene="ygcN" /locus_tag="SF2782" /note="Code: C; COG: COG0644" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708564.1" /db_xref="GeneID:1025764" /translation="MLCSGYLGHDMEDDCDIIIIGAGIAGTACALRCARADLSVLLLE RAEIPGSKNLSGRRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQP GGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYV VLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSG GICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLTRFKAHPAVRTLIKNTE SLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQ TLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGRYRAWPALMQDIS RDLWDQGDKPVPPLRQLFWHHLRRHGLWHLAGDVIRSLRCL" misc_feature 2856736..2857947 /gene="ygcN" /locus_tag="SF2782" /note="oxidoreductase; Provisional; Region: PRK10015" /db_xref="CDD:182194" gene 2857905..2858201 /gene="ygcO" /locus_tag="SF2783" /db_xref="GeneID:1025769" CDS 2857905..2858201 /gene="ygcO" /locus_tag="SF2783" /note="Code: C; COG: COG2440" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708565.2" /db_xref="GeneID:1025769" /translation="MASGGRCYQESAMSVARNLWRVADAPHIVPADSVERQMVQRLIN ACPVGLFSLTQEGDLRIDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG" misc_feature <2857974..2858198 /gene="ygcO" /locus_tag="SF2783" /note="4Fe-4S dicluster domain; Region: Fer4_8; cl19102" /db_xref="CDD:473136" gene 2858218..2858793 /gene="ygcP" /locus_tag="SF2784" /pseudo /db_xref="GeneID:1027408" misc_feature 2858218..2858793 /gene="ygcP" /locus_tag="SF2784" /note="Similar to Escherichia coli K12 anti-terminator regulatory protein gi: 1789127 (192 aa). BLAST with identity of 96% in 192 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(2858941..2859834) /gene="ygcQ" /locus_tag="SF2785" /db_xref="GeneID:1026925" CDS complement(2858941..2859834) /gene="ygcQ" /locus_tag="SF2785" /note="Code: C; COG: COG2025" /codon_start=1 /transl_table=11 /product="flavoprotein" /protein_id="NP_708566.1" /db_xref="GeneID:1026925" /translation="MAGLFTPKDAAMNIAIVTINQENAAIASWLAAQDFSGCTLAHWQ IEPQPVVAEQVLDAMVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLD IPTVSMRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPD WLVSTEDLKNVSRDPLAEARRVLVVGQGGEADNQEIVMLAEKLGAEVGYSRARVMNGG VDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFMVAINHDASAAVFSQADIG VVDDWKVVLEALVTNIHAEYQ" misc_feature complement(2858971..>2859681) /gene="ygcQ" /locus_tag="SF2785" /note="Electron transfer flavoprotein, alpha subunit FixB [Energy production and conversion]; Region: FixB; COG2025" /db_xref="CDD:441628" gene complement(2859798..2860577) /gene="ygcR" /locus_tag="SF2786" /db_xref="GeneID:1026917" CDS complement(2859798..2860577) /gene="ygcR" /locus_tag="SF2786" /note="Code: C; COG: COG2086" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708567.2" /db_xref="GeneID:1026917" /translation="MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADE QAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPE FVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDALFI TLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAEMPA MQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP" misc_feature complement(2859936..2860577) /gene="ygcR" /locus_tag="SF2786" /note="Adenine nucleotide alpha hydrolase (AANH) superfamily; Region: AANH_superfamily; cl00292" /db_xref="CDD:469708" gene complement(2860555..2861964) /gene="ygcS" /locus_tag="SF2787" /db_xref="GeneID:1024296" CDS complement(2860555..2861964) /gene="ygcS" /locus_tag="SF2787" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708568.1" /db_xref="GeneID:1024296" /translation="MTGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRI ATLTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWIS DHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFS PRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWG TPESPRWLLCQGRFAEAHAIVHRYFGPHVLLGDEVVTATHKHIKTLFSSRYWRRTAFN SVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHR KFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIR SLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLATVLLVGFVVTWLWAPETKA LPLVAAGNVGGANEHSVSV" misc_feature complement(2860636..2861832) /gene="ygcS" /locus_tag="SF2787" /note="Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily; Region: MFS_SV2_like; cd17316" /db_xref="CDD:340874" misc_feature complement(order(2860744..2860746,2860753..2860758, 2860765..2860770,2860777..2860779,2860825..2860827, 2860837..2860839,2860849..2860854,2861002..2861004, 2861014..2861016,2861089..2861091,2861098..2861106, 2861113..2861118,2861125..2861127,2861425..2861427, 2861434..2861439,2861446..2861448,2861506..2861508, 2861515..2861523,2861527..2861532,2861680..2861682, 2861776..2861778,2861785..2861790,2861797..2861802)) /gene="ygcS" /locus_tag="SF2787" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340874" mobile_element 2862840..2863607 /mobile_element_type="insertion sequence:IS1" gene 2863089..2863592 /gene="insB" /locus_tag="SF2789" /db_xref="GeneID:1025765" CDS 2863089..2863592 /gene="insB" /locus_tag="SF2789" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708570.1" /db_xref="GeneID:1025765" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 2863197..2863589 /gene="insB" /locus_tag="SF2789" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(2863631..2864302) /gene="ygcF" /locus_tag="SF2790" /db_xref="GeneID:1026921" CDS complement(2863631..2864302) /gene="ygcF" /locus_tag="SF2790" /note="Code: O; COG: COG0602" /codon_start=1 /transl_table=11 /product="7-carboxy-7-deazaguanine synthase QueE" /protein_id="NP_708571.1" /db_xref="GeneID:1026921" /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW EKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLL PLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKH PVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHK YLNIA" misc_feature complement(2863634..2864278) /gene="ygcF" /locus_tag="SF2790" /note="putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; Region: rSAM_QueE_Ecoli; TIGR04322" /db_xref="CDD:275126" misc_feature complement(order(2863730..2863735,2863895..2863897, 2863943..2863951,2864018..2864023,2864027..2864029, 2864135..2864137,2864189..2864194,2864198..2864200, 2864204..2864206,2864210..2864212)) /gene="ygcF" /locus_tag="SF2790" /note="FeS/SAM binding site [active]" /db_xref="CDD:100105" mobile_element 2864641..2865408 /mobile_element_type="insertion sequence:IS1" gene 2864696..2864971 /gene="insA" /locus_tag="SF2791" /db_xref="GeneID:1027411" CDS 2864696..2864971 /gene="insA" /locus_tag="SF2791" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708572.1" /db_xref="GeneID:1027411" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 2864717..>2864968 /gene="insA" /locus_tag="SF2791" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 2864998..2865393 /gene="insB" /locus_tag="SF2792" /db_xref="GeneID:1025762" CDS 2864998..2865393 /gene="insB" /locus_tag="SF2792" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708573.1" /db_xref="GeneID:1025762" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 2865001..2865390 /gene="insB" /locus_tag="SF2792" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 2865395..2866280 /gene="ygcG" /locus_tag="SF2793" /pseudogene="unknown" /db_xref="GeneID:1027410" gene complement(2866264..2867562) /gene="eno" /locus_tag="SF2794" /db_xref="GeneID:1027407" CDS complement(2866264..2867562) /gene="eno" /locus_tag="SF2794" /note="Code: G; COG: COG0148" /codon_start=1 /transl_table=11 /product="enolase" /protein_id="NP_708575.1" /db_xref="GeneID:1027407" /translation="MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG SREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTEN KSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGS NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA" misc_feature complement(2866273..2867562) /gene="eno" /locus_tag="SF2794" /note="Enolase [Carbohydrate transport and metabolism]; Region: Eno; COG0148" /db_xref="CDD:439918" gene complement(2867650..2869287) /gene="pyrG" /locus_tag="SF2795" /db_xref="GeneID:1025760" CDS complement(2867650..2869287) /gene="pyrG" /locus_tag="SF2795" /note="Code: F; COG: COG0504" /codon_start=1 /transl_table=11 /product="CTP synthetase" /protein_id="NP_708576.1" /db_xref="GeneID:1025760" /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQM AVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA NERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW EQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVE TRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARH VANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVD DSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPW FVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK" misc_feature complement(2867659..2869281) /gene="pyrG" /locus_tag="SF2795" /note="CTP synthetase; Validated; Region: pyrG; PRK05380" /db_xref="CDD:235437" gene complement(2869515..2870306) /gene="mazG" /locus_tag="SF2796" /db_xref="GeneID:1026923" CDS complement(2869515..2870306) /gene="mazG" /locus_tag="SF2796" /note="Code: R; COG: COG1694" /codon_start=1 /transl_table=11 /product="nucleoside triphosphate pyrophosphohydrolase" /protein_id="NP_708577.1" /db_xref="GeneID:1026923" /translation="MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVL DAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFAD SSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWT TLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQK VNEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL" misc_feature complement(2869521..2870306) /gene="mazG" /locus_tag="SF2796" /note="nucleoside triphosphate pyrophosphohydrolase; Reviewed; Region: mazG; PRK09562" /db_xref="CDD:236569" gene complement(2870402..2872636) /gene="relA" /locus_tag="SF2797" /db_xref="GeneID:1027604" CDS complement(2870402..2872636) /gene="relA" /locus_tag="SF2797" /note="Code: TK; COG: COG0317" /codon_start=1 /transl_table=11 /product="(p)ppGpp synthetase I/GTP pyrophosphokinase" /protein_id="NP_708578.1" /db_xref="GeneID:1027604" /translation="MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQ QTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS VVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL REVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLL HERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDV RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV EIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGE MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAG RQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNK PSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGF ITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRD ITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR LHGS" misc_feature complement(2870408..2872636) /gene="relA" /locus_tag="SF2797" /note="(p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional; Region: relA; PRK10872" /db_xref="CDD:182797" gene complement(2872684..2873985) /gene="rumA" /locus_tag="SF2798" /db_xref="GeneID:1025761" CDS complement(2872684..2873985) /gene="rumA" /locus_tag="SF2798" /note="Code: J; COG: COG2265" /codon_start=1 /transl_table=11 /product="23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD" /protein_id="NP_708579.1" /db_xref="GeneID:1025761" /translation="MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGL LPQENAEVAVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQR SKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVK QCPILAPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREK LERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVA RALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQ NVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPA TLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK" misc_feature complement(2872693..2873982) /gene="rumA" /locus_tag="SF2798" /note="23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; Region: rumA; PRK13168" /db_xref="CDD:237291" gene 2874042..2876798 /gene="barA" /locus_tag="SF2799" /db_xref="GeneID:1026816" CDS 2874042..2876798 /gene="barA" /locus_tag="SF2799" /codon_start=1 /transl_table=11 /product="hybrid sensory histidine kinase BarA" /protein_id="NP_708580.1" /db_xref="GeneID:1026816" /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA GASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFH LDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYI ALELDLKSVRLQQYKEIFISCVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTI ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTL NIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIR DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR GSTFWFHINLDLNPNIIIEGPSIQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYS PTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKL KQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKL IGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQR QTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPE VNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLAGENPEGL VDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREAS KILG" misc_feature 2874042..2876795 /gene="barA" /locus_tag="SF2799" /note="hybrid sensory histidine kinase BarA; Provisional; Region: PRK11107" /db_xref="CDD:236848" gene complement(2877030..2878370) /gene="ygcX" /locus_tag="SF2800" /db_xref="GeneID:1027402" CDS complement(2877030..2878370) /gene="ygcX" /locus_tag="SF2800" /note="Code: H; COG: COG1441" /codon_start=1 /transl_table=11 /product="glucarate dehydratase" /protein_id="NP_708581.1" /db_xref="GeneID:1027402" /translation="MSSQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIK DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTLVRNTFADRDASGRGLQ TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKAT PLPYQSQPDDSCDWYRLRHEEAMTPDAVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE SIVALAQRFPQARITLDPNGAWSLNEAIKIGKYLKGSLAYAEDPCGAEQGFSGREVMA EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGLVQV PEKPGLGVEIDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR" misc_feature complement(2877033..2878358) /gene="ygcX" /locus_tag="SF2800" /note="glucarate dehydratase; Region: glucar-dehydr; TIGR03247" /db_xref="CDD:211799" gene complement(2878391..2879731) /gene="ygcY" /locus_tag="SF2801" /db_xref="GeneID:1025794" CDS complement(2878391..2879731) /gene="ygcY" /locus_tag="SF2801" /note="Code: H; COG: COG1441" /codon_start=1 /transl_table=11 /product="glucarate dehydratase" /protein_id="NP_708582.2" /db_xref="GeneID:1025794" /translation="MATQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVVLTD NAGHTGIGEAPGGEVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGA WTFELRVNAVAALEAALLDLLGKALNVPVCELLGPGKQRETITVLGYLFYIGDRTKTD LPYLENTPGNHEWYQLRHQKAMNSEAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDT VRALKKSFPDARITVDPNGAWLLDEAISLCKGLNDVLTYAEDPCGAEQGFSGREVMAE FRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLSGAVRVAQLCDDWGLT WGCHSNNHFDISLAIFTHVGAAAPGNPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVP DAPGLGVELDWEQVQKAHEAYKRLPCGARNDAGPMQYLIPGWTFDRKRPVFGRH" misc_feature complement(2878397..2879719) /gene="ygcY" /locus_tag="SF2801" /note="glucarate dehydratase; Region: glucar-dehydr; TIGR03247" /db_xref="CDD:211799" gene complement(2879733..2881100) /locus_tag="SF2802" /db_xref="GeneID:1025797" CDS complement(2879733..2881100) /locus_tag="SF2802" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708583.1" /db_xref="GeneID:1025797" /translation="MSSLSQAASSVEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGS EMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSIFIWSM FTLLQGFVDIFSGFGIIVALFTLRFLVGLAEAPSFPGNSRIVAAWFPVQERGTAVSIF NSAQYFATVIFAPIMGWLTHEVGWSHVFFFMGGLGIVISFIWLKVIHEPNQHPGVNQK ELEYIAAGGALINMDQQSTKVKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFF ITWFPVYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTP IVMGMLLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGG LFNMFGNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALIAVLSYLVLVGDIKRIELK PVAGQ" misc_feature complement(2879778..2881022) /locus_tag="SF2802" /note="D-galactonate transporter; Region: 2A0114; TIGR00893" /db_xref="CDD:273326" gene complement(2881534..2881983) /locus_tag="SF2803" /db_xref="GeneID:1025796" CDS complement(2881534..2881983) /locus_tag="SF2803" /note="Code: C; COG: COG0716" /codon_start=1 /transl_table=11 /product="flavodoxin" /protein_id="NP_708584.1" /db_xref="GeneID:1025796" /translation="MAEIGIFVGTMYGNSLLVAEEAEAILTAQGHKATVFEDPELSDW LPYQDKYVLVVTSTTGQGDLPDSIVPLFQGIKDSLGFQPNLRYGVIALGDSSYVNFCN GGKQFDALLQEQSAQRVGEMLLIDASENPEPETESNPWVEQWGTLLS" misc_feature complement(2881537..2881983) /locus_tag="SF2803" /note="flavodoxin; Provisional; Region: PRK08105" /db_xref="CDD:181230" gene complement(2882001..2882783) /gene="yqcB" /locus_tag="SF2804" /db_xref="GeneID:1026915" CDS complement(2882001..2882783) /gene="yqcB" /locus_tag="SF2804" /note="Code: J; COG: COG0564" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase C" /protein_id="NP_708585.1" /db_xref="GeneID:1026915" /translation="MLEILYQDEWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIG QHVFTAHRLDRPTSGVLLMGLSSEAGRLLAQQFEQHQIQKRYHAIVRGWLMEEAVLDY PLVEELDKIADKFAREDKGPQPAVTHYRGLATVEMPVATGRYPTTRYGLVELEPKTGR KHQLRRHLAHLRHPIIGDSKHGDLRQNRSGAEHFGLQRLMLHASQLSLTHPFTGEPLT IHAGLDDTWMQALSQFGWRGLLPENERVEFSAPSGQDGEISS" misc_feature complement(2882019..2882783) /gene="yqcB" /locus_tag="SF2804" /note="tRNA pseudouridine synthase C; Provisional; Region: PRK11112" /db_xref="CDD:182971" misc_feature complement(order(2882289..2882291,2882622..2882633)) /gene="yqcB" /locus_tag="SF2804" /note="probable active site [active]" /db_xref="CDD:211333" gene complement(2882783..2883112) /locus_tag="SF2805" /db_xref="GeneID:1025781" CDS complement(2882783..2883112) /locus_tag="SF2805" /note="Code: S; COG: COG3098" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708586.1" /db_xref="GeneID:1025781" /translation="MTTHDRVRLQLQALEALLREHQHWRNDEPQPHQFNSTQPFFMDT MEPLEWLQWGLIPRMHDLLNNNQPLPGAFAVAPYYEMALATDHPQRALILAELEKLDA LFADDAS" misc_feature complement(2882786..2883112) /locus_tag="SF2805" /note="Uncharacterized conserved protein YqcC, DUF446 family [Function unknown]; Region: YqcC; COG3098" /db_xref="CDD:442332" gene complement(2883155..2883523) /gene="csrB" /locus_tag="SF4558" /db_xref="GeneID:1025776" ncRNA complement(2883155..2883523) /ncRNA_class="other" /gene="csrB" /locus_tag="SF4558" /product="CsrB RNA; inhibitor of CsrA" /db_xref="GeneID:1025776" gene complement(2883734..2884279) /gene="syd" /locus_tag="SF2806" /db_xref="GeneID:1026928" CDS complement(2883734..2884279) /gene="syd" /locus_tag="SF2806" /codon_start=1 /transl_table=11 /product="SecY interacting protein Syd" /protein_id="NP_708587.1" /db_xref="GeneID:1026928" /translation="MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIIST TEDAVYWQPQPFTGEQNVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQ TWSEDDFRRVQENLIGHLVTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGT RKRTNLASNLAEFLNQLKPLL" misc_feature complement(2883737..2884267) /gene="syd" /locus_tag="SF2806" /note="SecY interacting protein Syd; Provisional; Region: PRK04968" /db_xref="CDD:235324" gene 2884347..2885195 /gene="queF" /locus_tag="SF2807" /db_xref="GeneID:1025777" CDS 2884347..2885195 /gene="queF" /locus_tag="SF2807" /codon_start=1 /transl_table=11 /product="7-cyano-7-deazaguanine reductase" /protein_id="NP_708588.1" /db_xref="GeneID:1025777" /translation="MSSYANHQALAGLTLGKSTDYRDTYDASLLQGVPRSLNRDPLGL KADNLPFHGTDIWTLYELSWLNAKGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ TRFNNWDEVRQTLERDLSTCAQGKISVALYRLDELEGQPIGHFNGTCIDDQDITIDNY EFTTDYLENATSGEKVVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRQIDREKLLRY LVSFRHHNEFHEQCVERIFNDLLRFCQPEKLSVYARYTRRGGLDINPWRSNSDFVPST TRLVRQ" misc_feature 2884371..2885192 /gene="queF" /locus_tag="SF2807" /note="7-cyano-7-deazaguanine reductase; Provisional; Region: queF; PRK11792" /db_xref="CDD:236986" gene 2885307..2886671 /gene="ygdH" /locus_tag="SF2808" /db_xref="GeneID:1024184" CDS 2885307..2886671 /gene="ygdH" /locus_tag="SF2808" /note="Code: R; COG: COG1611" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708589.1" /db_xref="GeneID:1024184" /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS GSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEEAFVDGRIIRALQANLFAVLR DILFVYGQIHNTVRFPNLNLDNSVHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN ENEYLYARRVGNQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA NKDQVLPLILTGPKESADYFRVLDEFVVHTLGENARRHYRIIIDDAAEVARQMKKSMP LVKENRRDTGDAYSFNWSMRIAPDLQMPFEPSHENMANLKLYPDQPVEVLAADLRRAF SGIVAGNVKEVGIRAIEEFGPYKINGDKEIMRRMDDLLQGFVAQHRMKLPGSAYIPCY EICT" misc_feature 2885310..2886662 /gene="ygdH" /locus_tag="SF2808" /note="nucleotide 5'-monophosphate nucleosidase PpnN; Region: Nsidase_PpnN; NF038390" /db_xref="CDD:468501" mobile_element 2886688..2888115 /mobile_element_type="insertion sequence:IS4" gene 2886755..2888101 /locus_tag="SF2809" /db_xref="GeneID:1025785" CDS 2886755..2888101 /locus_tag="SF2809" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_708590.1" /db_xref="GeneID:1025785" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNAWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMSDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature 2886845..2887843 /locus_tag="SF2809" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene 2888665..2889954 /gene="sdaC" /locus_tag="SF2810" /db_xref="GeneID:1025784" CDS 2888665..2889954 /gene="sdaC" /locus_tag="SF2810" /note="Code: E; COG: COG0814" /codon_start=1 /transl_table=11 /product="serine transporter" /protein_id="NP_708591.1" /db_xref="GeneID:1025784" /translation="METTQTSTIASKDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT LLYFFAIYPILLVYSVAITNTVESFMSHQLGMTPPPRAILSLILIVGMMTIVRFGEQM IVKAMSILVFPFVGVLMLLALYLIPQWNGAALETLSLDTASATGNGLWMTLWLAIPVM VFSFNHSPIISSFAVANREEYGDMAEQKCSKILAFAHIMMVLTEMIFVFICVLSLTPA DLAAAKEHNISILSYLANHFNAPVIAWMAPIIAIIAITKSFLGHYLGAREGFNGMVIK SLRGKGKSIEINKLNRITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY AIQKVPAMRKYSGHISNVFVVVMGLIAISAIFYSLFS" misc_feature 2888716..2889918 /gene="sdaC" /locus_tag="SF2810" /note="serine transporter; Region: stp; TIGR00814" /db_xref="CDD:273283" gene 2890012..2891379 /gene="sdaB" /locus_tag="SF2811" /db_xref="GeneID:1025786" CDS 2890012..2891379 /gene="sdaB" /locus_tag="SF2811" /note="Code: E; COG: COG1760" /codon_start=1 /transl_table=11 /product="L-serine dehydratase" /protein_id="NP_708592.1" /db_xref="GeneID:1025786" /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARNLLKDVTR VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDSIPGFIQDVNTHGRLMLANGQ HEVEFPVDQCMNFHADNLSLHENGMRITALAGDKVVYSQTYYSIGGGFIVDEEHFGQQ DSAPVEVPYPYSSAADLQKHCQETGLSLSGLMMKNELALHSKEELEQHLANVWEVMRG GIERGISTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA AGGRVVTAPTNGACGIIPAVLAYYDKFIREVNANSLARYLLVASAIGSLYKMNASISG AEVGCQGEVGVACSMAAAGLAELLGASPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC IERNAIAAVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK IVACD" misc_feature 2890015..2891364 /gene="sdaB" /locus_tag="SF2811" /note="L-serine dehydratase, iron-sulfur-dependent, single chain form; Region: sda_mono; TIGR00720" /db_xref="CDD:273233" gene 2891400..2892245 /gene="xni" /locus_tag="SF2812" /db_xref="GeneID:1025780" CDS 2891400..2892245 /gene="xni" /locus_tag="SF2812" /note="Code: L; COG: COG0258" /codon_start=1 /transl_table=11 /product="flap endonuclease-like protein" /protein_id="NP_708593.1" /db_xref="GeneID:1025780" /translation="MRSLFLFSQPAIACSGIECYPYRLIFKGVIVAVHLLIVDALNLI RRIHAVQGSPCVETCQHALDQLIMHSQPTHAVAVFDDENRSSGWRHQRLPDYKADRPP MPEELHDEMPALRAAFEQRGVPCWSASGNEADDLAATLAVKVTQAGHQATIVSTDKGY CQLLSPTLRIRDYFQKRWLDAPFIDKEFGVQPQQLPDYWGLAGISSSKVPGVAGIGPK SATQLLVEFQSLEGIYENLDAVAEKWRKKLETHKEMAFLCRDIARLQTDLHIDGNLQQ LRLVR" misc_feature 2891490..2892242 /gene="xni" /locus_tag="SF2812" /note="flap endonuclease-like protein; Provisional; Region: PRK09482" /db_xref="CDD:181896" gene complement(2892298..2893446) /gene="fucO" /locus_tag="SF2813" /db_xref="GeneID:1026920" CDS complement(2892298..2893446) /gene="fucO" /locus_tag="SF2813" /note="Code: C; COG: COG1454" /codon_start=1 /transl_table=11 /product="L-1,2-propanediol oxidoreductase" /protein_id="NP_708594.2" /db_xref="GeneID:1026920" /translation="MANRMILNETAWFGRGAVGALTDEVKRRGYQKALIVTDKTLVQC GVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQDT CKAIGIISNNPEFADVRSLEGLSPTNKPSVPILAIPTTAGTAAEVTINYVITDEEKRR KFVCVDPHDIPQVAFIDADMMDGMPPALKAATGVDALTHAIEGYITRGAWALTDALHI KAIEIIAGALRGSVAGDKDAGEEMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPH GVANAILLPHVMRYNADFTGEKYRDIARVMGVKVEGMSLEGARNAAVEAVFALNRDVG IPPHLRDVGVRKEDISALAQAALDDVCTGGNPREATLEDIVELYHTAW" misc_feature complement(2892301..2893446) /gene="fucO" /locus_tag="SF2813" /note="L-1,2-propanediol oxidoreductase; Provisional; Region: PRK10624" /db_xref="CDD:182595" misc_feature complement(order(2892715..2892717,2892802..2892804, 2892931..2892933,2893408..2893422)) /gene="fucO" /locus_tag="SF2813" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:341455" misc_feature complement(order(2892619..2892621,2892661..2892663, 2892850..2892852,2892862..2892864,2892883..2892885, 2892907..2892909,2892964..2892966,2892991..2892993, 2893018..2893020,2893027..2893032,2893153..2893161, 2893333..2893335)) /gene="fucO" /locus_tag="SF2813" /note="active site" /db_xref="CDD:341455" misc_feature complement(order(2892619..2892621,2892661..2892663, 2892850..2892852,2892862..2892864)) /gene="fucO" /locus_tag="SF2813" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:341455" gene complement(2893474..2894121) /gene="fucA" /locus_tag="SF2814" /db_xref="GeneID:1025774" CDS complement(2893474..2894121) /gene="fucA" /locus_tag="SF2814" /note="Code: G; COG: COG0235" /codon_start=1 /transl_table=11 /product="L-fuculose phosphate aldolase" /protein_id="NP_708595.1" /db_xref="GeneID:1025774" /translation="MERNKLARQIIDTCLEMTRLGLNQGTAGNVSVRYQDGMLITPTG IPYEKLTESHIVFIDGNGKHEEGKLPSSEWRFHMAAYQSRPDANAVVHNHAVHCTAVS ILNRSIPAIHYMIAAAGGNSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGLIAC EVNLEKALWLAHEVEVLAQLYLTTLAITDPVPVLSDEEIAVVLEKFKTYGLRIEE" misc_feature complement(2893477..2894121) /gene="fucA" /locus_tag="SF2814" /note="L-fuculose-phosphate aldolase; Region: PRK08087" /db_xref="CDD:181226" misc_feature complement(order(2893513..2893515,2893573..2893575, 2893594..2893596,2893606..2893608,2893627..2893629, 2893660..2893662,2893738..2893740,2893780..2893785, 2893789..2893791,2893810..2893818,2893831..2893836, 2893840..2893842,2893975..2893980,2893984..2893986, 2894050..2894052,2894074..2894076,2894086..2894088)) /gene="fucA" /locus_tag="SF2814" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238232" misc_feature complement(order(2893657..2893659,2893840..2893842, 2893846..2893848,2893903..2893911,2893990..2893995, 2894035..2894037)) /gene="fucA" /locus_tag="SF2814" /note="active site" /db_xref="CDD:238232" misc_feature complement(order(2893657..2893659,2893840..2893842, 2893846..2893848)) /gene="fucA" /locus_tag="SF2814" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238232" gene 2894668..2895984 /gene="fucP" /locus_tag="SF2815" /db_xref="GeneID:1025782" CDS 2894668..2895984 /gene="fucP" /locus_tag="SF2815" /note="Code: G; COG: COG0738" /codon_start=1 /transl_table=11 /product="L-fucose transporter" /protein_id="NP_708596.1" /db_xref="GeneID:1025782" /translation="MGNTSIQTQSYRAVDKDAGQSRSYIIPFALLCSLFFLWAVANNL NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYA LGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSSHFRLNLAQT FNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAI VLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTA CWSYLIRYAVEEILGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI AMALCLISAFAGGHVGLIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVMTII GGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARFRSQTATN" misc_feature 2894668..2895981 /gene="fucP" /locus_tag="SF2815" /note="L-fucose:H+ symporter permease; Region: PRK10133" /db_xref="CDD:182260" misc_feature order(2894758..2894760,2894767..2894772,2894779..2894781, 2894791..2894793,2894947..2894949,2894959..2894961, 2895067..2895072,2895079..2895084,2895142..2895144, 2895151..2895153,2895331..2895333,2895343..2895345) /gene="fucP" /locus_tag="SF2815" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340952" gene 2896017..2897792 /gene="fucI" /locus_tag="SF2816" /db_xref="GeneID:1027300" CDS 2896017..2897792 /gene="fucI" /locus_tag="SF2816" /note="Code: G; COG: COG2407" /codon_start=1 /transl_table=11 /product="L-fucose isomerase" /protein_id="NP_708597.1" /db_xref="GeneID:1027300" /translation="MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALLTEK LRHACGAAVECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCYGSETIDMDPT RPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL RFARAGLAVASMKGKSYLSLGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRID QKIYDEAELEMALAWADKNFRYGEDENNKQYQRNAEQSRAVLRESLLMAMCIRDMMQG NSKLADIGRVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEAILNSSFDWNGVREPFVV ATENDSLNGVAMLMGHQLTGTAQVFADVRTYWSPEAIERVTGHKLDGLAEHGIIHLIN SGSAALDGSCKQRDSEGNPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRF LTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKDVHDILNKRTNSTWPTTWFAPRL TGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLASMLRIPVCMHNVEETKVYRPSA WAAHGMDIEGQDYRACQNYGPLYKR" misc_feature 2896023..2897786 /gene="fucI" /locus_tag="SF2816" /note="L-fucose isomerase; Provisional; Region: fucI; PRK10991" /db_xref="CDD:182885" gene 2897871..2899320 /gene="fucK" /locus_tag="SF2817" /pseudo /db_xref="GeneID:1026919" misc_feature 2897871..2899320 /gene="fucK" /locus_tag="SF2817" /note="Similar to Escherichia coli K12 L-fuculokinase gi: 1789168 (483 aa). BLAST with identity of 98% in 483 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 2899322..2899744 /gene="fucU" /locus_tag="SF2818" /db_xref="GeneID:1025775" CDS 2899322..2899744 /gene="fucU" /locus_tag="SF2818" /note="Code: G; COG: COG1869" /codon_start=1 /transl_table=11 /product="L-fucose mutarotase" /protein_id="NP_708598.1" /db_xref="GeneID:1025775" /translation="MLKTISPLISPELLKVLAEMGHGDEIIFSDAHFPAHSMEPQVIR ADGLLVSDLLQAIIPLFELDSYAPPLVMMAAVEGDTLDPEVERRYRNALSLQAPCPDI IRINRFAFYERAQKAFAIVITGERAKYGNILLKKGVTP" misc_feature 2899322..2899741 /gene="fucU" /locus_tag="SF2818" /note="L-fucose mutarotase; Provisional; Region: fucU; PRK15420" /db_xref="CDD:185318" gene 2899802..2900533 /gene="fucR" /locus_tag="SF2819" /db_xref="GeneID:1025822" CDS 2899802..2900533 /gene="fucR" /locus_tag="SF2819" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator FucR" /protein_id="NP_708599.2" /db_xref="GeneID:1025822" /translation="MKAARQQAIVDLLLNHTSLTTEALSEQLKVSKETIRRDLNELQT QGKILRNHGRAKYIHRQNQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMVIALDAS STCWYLARQLPDINIQVFTNSHPICHELGKRERIQLISSGGTLERKYGCYVNPSLISQ LKSLEIDLFIFSCEGIDSSGALWDSNAINADYKSMLLKRAAQSLLLIDKSKFNRSGEA RIGHLDEVTHIISDERQVATSLVTA" misc_feature 2899802..2900521 /gene="fucR" /locus_tag="SF2819" /note="L-fucose operon activator; Region: PRK10411" /db_xref="CDD:236684" gene complement(2900577..2901677) /gene="ygdE" /locus_tag="SF2820" /db_xref="GeneID:1026817" CDS complement(2900577..2901677) /gene="ygdE" /locus_tag="SF2820" /note="Code: R; COG: COG2933" /codon_start=1 /transl_table=11 /product="23S rRNA (cytidine(2498)-2'-O)-methyltransferase RlmM" /protein_id="NP_708600.1" /db_xref="GeneID:1026817" /translation="MNKVVLLCRPGFEKECAAEITDKAGQREIFGFARVKENAGYVIY ECYQPDDGDKLIRELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE LRVEVADTNESKELLKFCRKFTVPLRAALRDAGVLANYETPKRPVVHVFFIAPGCCYT GYSYSNNNSPFYMGIPRLKFPAEAPSRSTLKLEEAFHVFIPADEWDERLANGMWAVDL GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVC DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYIQAQLDEHGINA QIQARQLYHDREEVTVHVRRIWAAVGGRRDER" misc_feature complement(2900607..2901677) /gene="ygdE" /locus_tag="SF2820" /note="putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional; Region: PRK11760" /db_xref="CDD:236971" gene complement(2901670..2902065) /gene="ygdD" /locus_tag="SF2821" /db_xref="GeneID:1025771" CDS complement(2901670..2902065) /gene="ygdD" /locus_tag="SF2821" /note="Code: S; COG: COG2363" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708601.1" /db_xref="GeneID:1025771" /translation="MTSRFMLIFAAISGFIFVALGAFGAHVLSKTMGAVEMGWIQTGL EYQAFHTLAILGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAFVT PVGGVSFLAGWALMLVGAIRLKRKGVSHE" misc_feature complement(2901673..2902065) /gene="ygdD" /locus_tag="SF2821" /note="hypothetical protein; Provisional; Region: PRK10873" /db_xref="CDD:182798" gene complement(2902084..2903001) /gene="gcvA" /locus_tag="SF2822" /db_xref="GeneID:1025779" CDS complement(2902084..2903001) /gene="gcvA" /locus_tag="SF2822" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator GcvA" /protein_id="NP_708602.1" /db_xref="GeneID:1025779" /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLP SFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGFNHINVQQGP IFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA ELGKIAAFRQWILAKAAAEQEKFRFRYEQ" misc_feature complement(2902111..2903001) /gene="gcvA" /locus_tag="SF2822" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" gene 2903130..2903242 /gene="gcvB" /locus_tag="SF4559" /db_xref="GeneID:1025778" ncRNA 2903130..2903242 /ncRNA_class="other" /gene="gcvB" /locus_tag="SF4559" /product="gcvB RNA; regulator" /db_xref="GeneID:1025778" gene complement(2903352..2903582) /locus_tag="SF2823" /db_xref="GeneID:1025804" CDS complement(2903352..2903582) /locus_tag="SF2823" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708603.1" /db_xref="GeneID:1025804" /translation="MMKKTAAIISACMLTFALSACSGSNYVMHTNDGRTIVSDGKPQT DNDIGMISYKDANGNKQQINRTDVKEMVELEQ" misc_feature complement(2903361..2903576) /locus_tag="SF2823" /note="Bacterial protein of unknown function (DUF903); Region: DUF903; cl05512" /db_xref="CDD:471259" gene 2903771..2904976 /locus_tag="SF2824" /db_xref="GeneID:1025809" CDS 2903771..2904976 /locus_tag="SF2824" /note="Code: E; COG: COG0520" /codon_start=1 /transl_table=11 /product="cysteine sulfinate desulfinase" /protein_id="NP_708604.2" /db_xref="GeneID:1025809" /translation="MNVFNPAQFRAQFPALQDAGVYLDSAATALKPEAVVEATRQFYS LSAGNVHRSQFAEAQRLTARYEAAREKVAQLLNAPDDKTIVWTRGTTESINMVAQCYA RPRVQPGDEIIVSVAEHHANLVHWLMVAQQTRAKVVKLPLNAQRLPDVDLLPELITPR SRILALGQMSNVTGGCPDLARAITFAHSAGMVVMVDGAQGTVHFPADVQQLDIDFYAF SGHKLYGPTGIGVLYGKSELLEAMSPWLGGGKMIHEVSFDGFTTQSAPWKLEAGTPNV AGVIGLSAALEWLADYDINQAESWSRSLATLAEEALAKRPGFRSFRCQDSSLLAFDFA GVHHSDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTKSDVDALVNAV DRALELLVD" misc_feature 2903771..2904973 /locus_tag="SF2824" /note="cysteine desulfurase CsdA; Region: PRK10874" /db_xref="CDD:182799" misc_feature order(2904038..2904043,2904050..2904052,2904125..2904127, 2904356..2904358,2904362..2904367,2904425..2904427, 2904431..2904436) /locus_tag="SF2824" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99746" misc_feature 2904434..2904436 /locus_tag="SF2824" /note="catalytic residue [active]" /db_xref="CDD:99746" gene 2904976..2905419 /gene="ygdK" /locus_tag="SF2825" /db_xref="GeneID:1025808" CDS 2904976..2905419 /gene="ygdK" /locus_tag="SF2825" /note="Code: R; COG: COG2166" /codon_start=1 /transl_table=11 /product="CsdA-binding activator" /protein_id="NP_708605.1" /db_xref="GeneID:1025808" /translation="MTNPQFAGHPFGTTVTAETLRNTFAPLSQWEDKYRQLIMLGKQL PALPDELKAQAKEIAGCENRVWLGYTVAENGKMHFFGNSEGRIVRGLLAVLLTAVEGK TAAELQAQSPLALFDELGLRAQLSASRSQGLNALSEAIIAATKQV" misc_feature 2904976..2905416 /gene="ygdK" /locus_tag="SF2825" /note="cysteine desulfurase sulfur acceptor subunit CsdE; Region: PRK15019" /db_xref="CDD:184980" gene complement(2905470..2906276) /gene="ygdL" /locus_tag="SF2826" /db_xref="GeneID:1025803" CDS complement(2905470..2906276) /gene="ygdL" /locus_tag="SF2826" /note="Code: H; COG: COG1179" /codon_start=1 /transl_table=11 /product="sulfur acceptor protein CsdL" /protein_id="NP_708606.1" /db_xref="GeneID:1025803" /translation="MSVVISDAWRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSW AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV TVVDDFVTPDNVAQYMSAGYSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGGAGGQID PTQIQVTDLAKTIQDPLAAKLRERLKSDFGVVKNSKGKLGVDCVFSTEALVYPQSDGT VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKMMAKAARQG" misc_feature complement(2905473..2906276) /gene="ygdL" /locus_tag="SF2826" /note="sulfur acceptor protein CsdL; Provisional; Region: PRK15116" /db_xref="CDD:185071" gene complement(2906514..2907611) /gene="mltA" /locus_tag="SF2827" /db_xref="GeneID:1027401" CDS complement(2906514..2907611) /gene="mltA" /locus_tag="SF2827" /note="Code: M; COG: COG2821" /codon_start=1 /transl_table=11 /product="murein transglycosylase A" /protein_id="NP_708607.2" /db_xref="GeneID:1027401" /translation="MKGRWVKYLLMGTVVAMLAACSSKPTDRGQQYKDGKFTQPFSLV NQPDAVGAPINAGDFAEQINHIRNSSPRLYGNQSNVYNAVQEWLRAGGDTRNMRQFGI DAWQMEGADNYGNVQFTGYYTPVIQARHTRQGEFQYPIYRMPPKRGRLPSRAEIYAGA LGDKYILAYSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGHAYRSIGKVLIDR GEVKKEDMSMQAIRHWGETHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLVGRA SVASDRSIIPPGTTLLAEVPLLDNNGKFNGQYELRLMVALDVGGAIKGQHFDIYQGIG PEAGHRAGWYNHYGRVWVLKTAPGAGNVFSG" misc_feature complement(2906550..2907611) /gene="mltA" /locus_tag="SF2827" /note="murein transglycosylase A; Provisional; Region: mltA; PRK11162" /db_xref="CDD:236866" gene 2907820..2907896 /locus_tag="SF4504" /db_xref="GeneID:3161832" tRNA 2907820..2907896 /locus_tag="SF4504" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161832" gene 2907930..2908006 /locus_tag="SF4505" /db_xref="GeneID:3161827" tRNA 2907930..2908006 /locus_tag="SF4505" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161827" gene complement(2908081..2909424) /locus_tag="SF2828" /db_xref="GeneID:1025787" CDS complement(2908081..2909424) /locus_tag="SF2828" /note="Code: M; COG: COG0860" /codon_start=1 /transl_table=11 /product="amidase" /protein_id="NP_708608.1" /db_xref="GeneID:1025787" /translation="MTDYASFAKVSGQISRLLVTQLRFLLLGRGMSGSNTAISRRRLL QGAGAMWLLSVSQVSLAAVSQVVAVRVWPASSYTRVTVESNRQLKYKQFALSNPERVV VDIEDVNLNSVLKGMAAQIRADDPFIKSARVGQFDPQTVRMVFELKQNVKPQLFALAP VAGFKERLVMDLYPANAQDMQDPLLALLEDYNKGDLEKQVPPAQSGPQPGKAGRDRPI VIMLDPGHGGEDSGAVGKYKTREKDVVLQIARRLRSLIEEEGNMKVYMTRNEDIFIPL QVRVAKAQKQRADLFVSIHADAFTSRQPSGSSVFALSTKGATSTAAKYLAQTQNASDL IGGVSKSGDRYVDHTMFDMVQSLTIADSLKFGKAVLNKLGKINKLHKNQVEQAGFAVL KAPDIPSILVETAFISNVEEERKLKTATFQQEVAESILAGIKAYFADGATLARRG" misc_feature complement(2908111..2909334) /locus_tag="SF2828" /note="N-acetylmuramoyl-L-alanine amidase AmiC; Region: amidase_AmiC; NF038267" /db_xref="CDD:468440" gene 2909566..2910897 /gene="argA" /locus_tag="SF2829" /db_xref="GeneID:1025049" CDS 2909566..2910897 /gene="argA" /locus_tag="SF2829" /note="Code: E; COG: COG0548" /codon_start=1 /transl_table=11 /product="N-acetylglutamate synthase" /protein_id="NP_708609.2" /db_xref="GeneID:1025049" /translation="MVKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHENFSS IVNDIGLLHSLGIRLVVVYGARPQIDANLAAHHHEPLYHKNIRVTDAKTLELVKQAAG TLQLDITARLSMSLNNTPLQGAHINVVSGNFIIAQPLGVDDGVDYCHSGRIRRIDEDA LHRQLESGAIVLMGPVAVSVTGESFNLTSEEIATQLAIKLKAEKMIGFCSSQGVTNDD GDIVSELFPNEAQARVEAQEEKGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGAL LQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEI DKFTIIQRDNTTIACAALYPFPEEKIGEMACVAVHPDYRSSSRGEVLLERIAAQAKQS GLSKLFVLTTRSIHWFQERGFTPVDIDLLPESKKQLYNYQRKSKVLMADLG" misc_feature 2909566..2910891 /gene="argA" /locus_tag="SF2829" /note="N-acetylglutamate synthase; Validated; Region: PRK05279" /db_xref="CDD:235386" gene complement(2910959..2912785) /gene="recD" /locus_tag="SF2830" /db_xref="GeneID:1025813" CDS complement(2910959..2912785) /gene="recD" /locus_tag="SF2830" /note="Code: L; COG: COG0507" /codon_start=1 /transl_table=11 /product="exonuclease V subunit alpha" /protein_id="NP_708610.1" /db_xref="GeneID:1025813" /translation="MKLQKQLLEAVEHKQLRPLDVQFALTVAGDEHPAVTLAAALLSH DAGEGHVCLPLSRLENNEASNPLLATCVSEIGELQNWEECLLASQAVSRGDEPTPMIL CGDRLYLNRMWCNERTVARFFNEVNHTIEVDEALLAQTLDKLFPVSDEINWQKVAAAV ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK ALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL PMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTG THVPAGTGTEAASLRDSLCLLQKSYRFGSDSGIGQLAAAINRGDKTAVKTVFQQDFTD IEKRLLQSGEDYIAMLEEALAGYGRYLDLLQARAEPDLIIQAFNEYQLLCALREGPFG VAGLNERIEQFMQQKRKIHRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGT RVWFAMPDGNIKSVQPSRLPEHETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELV YTAVTRARRRLSLYADERILSAAIATRTERRSGLAALFSSRE" misc_feature complement(2910962..2912779) /gene="recD" /locus_tag="SF2830" /note="exodeoxyribonuclease V subunit alpha; Region: recD; PRK10875" /db_xref="CDD:236783" gene complement(2912785..2916327) /gene="recB" /locus_tag="SF2831" /db_xref="GeneID:1025812" CDS complement(2912785..2916327) /gene="recB" /locus_tag="SF2831" /note="Code: L; COG: COG1074" /codon_start=1 /transl_table=11 /product="exonuclease V subunit beta" /protein_id="NP_708611.2" /db_xref="GeneID:1025812" /translation="MSDVAETLDPLRLPLQGERLIEASAGTGKTFTIAALYLRLLLGL GGSAAFPRPLIVEELLVVTFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLE EIDDKAQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLR YQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEPPVIKAPPPDDETL ASRHAQIVARIDTVKQQWRDAVGELDALIESSGIDRRKFNRSNQAKWIEKISAWAEEE TNSYQLPESLEKFSQRFLEDRTKAGGETPRHPLFEAIDQLLAEPLSIRDLLITRALAE IRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRTRFPVAMIDEFQDTDPQ QYRIFRRIWHHQPETALLLIGDPKQAIYAFRGADIFTYMKARSEVHAHYTLDTNWRSA PGMVNSVNKLFSQTDDTFMFREIPFIPVKSAGKNQALRFVFKGETQPAMKMWLMEGES CGVGDYQSTMAQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQ VRDALTLLEIPSVYLSNRDSVFETLEAQEMLWLLQAVMTPERENTLRSALATSMMGLN ALDIETLNNDEHAWDAVVEEFDGYRQIWRKRGVMPMLRALMSARNIAENLLATAGGER RLTDILHISELLQEAGTQLESEHALVRWLSQHILEPDSNASSQQMRLESDKHLVQIVT IHKSKGLEYPLVWLPFITNFRVQDQAFYHDRHSFEAVLDLNAAPESVDLAEVERLAED LRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGRLLQKGEPQDAAGLRTC IEALCDDDIAWQTAQTGDNQPWQVNDALTAELNARTLQRLPGDNWRVTSYSGLQQRGH GIAQDLMPRLDVDAAGVVSVVEEPTLTPHQFPRGASPGTFLHSLFEDLDFTQPVDPNW VQEKLELGGFESQWEPVLTEWITAVLQAPLNETGVSLSQLSDRDKQVEMEFYLPISEP LIASQLDALIRQFDPLSAGCPPLEFMQVRGMLKGFIDLVFRHEGRYYLLDYKSNWLGE DSSAYTQQAMAAAMQAHRYDLQYQLYTLALHRYLRHRIADYDYDLHFGGVIYLFLRGV DKEHPQQGIYTTRPNAGLIALMDEMFAGMTLEEA" misc_feature complement(2912788..2916327) /gene="recB" /locus_tag="SF2831" /note="exonuclease V subunit beta; Provisional; Region: recB; PRK10876" /db_xref="CDD:236784" gene complement(2916320..2919208) /gene="ptr" /locus_tag="SF2832" /db_xref="GeneID:1025819" CDS complement(2916320..2919208) /gene="ptr" /locus_tag="SF2832" /note="Code: O; COG: COG1025" /codon_start=1 /transl_table=11 /product="protease3" /protein_id="NP_708612.1" /db_xref="GeneID:1025819" /translation="MPRSTWFKALLLFVALWAPLSQAETGWQPIQETIRKSDKDNRQY QAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYP QADSLAEYLKMHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAE RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDKPGNPVQQAL KDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKG IIIHYVPALPRKVLRVEFRIDNNSAKFRSKTDELITYLIGNRSPGTLSDWLQKQGLVE GISANSDPIVNGNSGVLAISASLTDKGLANRDQVVAAIFSYLNLLREKGIDKQYFDEL ANVLDIDFRYPSITRDMDYVEWLADTMIRVPVEHTLDAVNIADRYDAKAVKERLAMMT PQNARIWYISPKEPHNKTAYFVDAPYQVDKISAQTFADWQKKAADIALSLPELNPYIP DDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQ VMFALNDYLAGLALDQLSNQASVGGISFSTNANNGLMINANGYTQRLPQLFQALLEGY FSYTATEEQLEQAKSWYNQMMDSAEKGKAFEQAIMPAQMLSQVPYFSRDERRKILPSI TLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADGSEWCRNKDVVVD KKQSVIFEKAGNSTDSALAAVFVPTGYDEYTSSAYSSLLGQIVQPWFYNQLRTEEQLG YAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQ AVITQMLQAPQTLGEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVV EPQGMAILSQISGSQNGKAEYVHPEGWKVWENVSALQQTMPLMSEKNE" misc_feature complement(2916329..2919208) /gene="ptr" /locus_tag="SF2832" /note="protease3; Provisional; Region: PRK15101" /db_xref="CDD:185056" gene complement(2919384..2922752) /gene="recC" /locus_tag="SF2833" /db_xref="GeneID:1025810" CDS complement(2919384..2922752) /gene="recC" /locus_tag="SF2833" /note="Code: L; COG: COG1330" /codon_start=1 /transl_table=11 /product="exonuclease V subunit gamma" /protein_id="NP_708613.1" /db_xref="GeneID:1025810" /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ WLQMTLSQKFGIAANIDFPLPASFIWDMFVRVLPEIPKESAFNKQSMSWKLMTLLPQL LEREDFTLLRHYLTDDSDKRKLFQLSSKAADLFDQYLVYRPDWLAQWETGHLVEGLGE AQAWQAPLWKALVEYTHELGQPRWHRANLYQRFIETLESATTCPPGLPSRVFICGISA LPPVYLQALQALGKHIEIHLLFTNPCRYYWGDIKDPAYLAKLLTRQRRHSFEDRELPL FRDSENAGQLFNSDGEQDVGNSLLASWGKLGRDYIYLLSDLESSQELDAFVDVTPDNL LHNIQSDILELENRAVAGVNIEEFSRSDNKRPLDPLDSSITFHVCHSPQREVEVLHDR LLAMLEEAPTLTPRDIIVMVADIDSYSPFIQAVFGSAPADRYLPYAISDRRARQSHPV LEAFISLLSLPDSRFVSEDVLALLDVPVLAARFDITEEGLRYLRQWVNESGIRWGIDD DNVRELELPATGQHTWRFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS LLMQLNIWRRGLAQERPLEEWLPVCRDMLNAFFLPDAETEAAMTLIEQQWQAIIAEGL GAQYGDAVPLSLLRDELAQRLDQERISQRFLAGPVNICTLMPMRSIPFKVVCLLGMND GVYPRQLAPLGFDLMSQKPKRGDRSRRDDDRYLFLEALISAQQKLYISYIGRSIQDNS ERFPSVLVQELIDYIGQSHYLPGDEALNCDESEARVKAHLTCLHTRMPFDPQNYQPGE RQSYAREWLPAASQAGKAHSEFVQPLPFTLPETVPLETLQRFWAHPVRAFFQMRLQVN FHTEDSEIPDTEPFILEGLSRYQINQQLLNALVEQDDAERLFRRFRAAGDLPYGAFGE IFWETQCQEMQQLADRVIACRQPGQSMEIDLACNGVQITGWLPQVQPDGLLRWRPSLL SVAQGMQLWLEHLVYCASGGNGESRLFLRKDGEWRFPPLAAEQALHYLSQLIEGYREG MSAPLLVLPESGGAWLKTCYDAQNDAMLDDDSTLQKARTKFLQAYEGNMMVRGEGDDI WYQRLWRQLTPETMEAIVEQSQRFLLPLFRFNQS" misc_feature complement(2919387..2922752) /gene="recC" /locus_tag="SF2833" /note="exodeoxyribonuclease V subunit gamma; Region: recC; PRK11069" /db_xref="CDD:236835" gene complement(2922765..2923115) /gene="ppdC" /locus_tag="SF2834" /db_xref="GeneID:1025807" CDS complement(2922765..2923115) /gene="ppdC" /locus_tag="SF2834" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708614.2" /db_xref="GeneID:1025807" /translation="MSASLKNQQGFSLPEVMVAMVLMVLMVLMVLMVMIVTALSGIQR TSMNSLASRNQYQQLWRHGWQQTQLRAISPPANWQVNRMQTSQAGCVSISVTLVSPGG REGEMTRLHCPNCQ" misc_feature complement(2922768..2923115) /gene="ppdC" /locus_tag="SF2834" /note="prepilin-type N-terminal cleavage/methylation domain-containing protein; Region: PRK10332" /db_xref="CDD:182384" gene complement(2923100..2923465) /gene="ygdB" /locus_tag="SF2835" /db_xref="GeneID:1025836" CDS complement(2923100..2923465) /gene="ygdB" /locus_tag="SF2835" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708615.4" /db_xref="GeneID:1025836" /translation="MLLVLGSLLLQGMSQQDRSFASRVSMESQSLRRQAIVQSALAWG KMHSWQTQPAVQCSQYAGTDAQVCLRLLADNEALLIAGYEGVSLWRTGEVIDGKIVFS PRGWSDFCPLKEGALCQLP" misc_feature complement(2923103..2923435) /gene="ygdB" /locus_tag="SF2835" /note="DUF2509 family protein; Region: PRK11521" /db_xref="CDD:183174" gene complement(2923504..2924067) /locus_tag="SF2835a" /db_xref="GeneID:16608353" CDS complement(2923504..2924067) /locus_tag="SF2835a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439276.1" /db_xref="GeneID:16608353" /translation="MPVKEQGFSLLEVLIAMAISSVLLLGAARFLPALQRESLTSTRK LALEDEIWLRVFTVAKHLQRAGYCHGSCTGEGLEIVGQGDCIIVQWDANSNGIWDREP VKESDQIGFRLKEHVLETLRGATSCEGKGWDKVTNPDAIIIDTFQVVRQDVSGFSPVL TVNMRAASKSEPQTVVDASYSVTGFNL" misc_feature complement(2923507..2924067) /locus_tag="SF2835a" /note="prepilin peptidase-dependent protein; Region: PRK10557" /db_xref="CDD:236714" gene complement(2924058..2924528) /gene="ppdA" /locus_tag="SF2836" /pseudo /db_xref="GeneID:1025788" misc_feature complement(2924058..2924528) /gene="ppdA" /locus_tag="SF2836" /note="Similar to Escherichia coli K12 prepilin peptidase dependent protein A gi: 1789190 (157 aa). BLAST with identity of 99% in 156 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(2924722..2925516) /gene="thyA" /locus_tag="SF2837" /db_xref="GeneID:1025814" CDS complement(2924722..2925516) /gene="thyA" /locus_tag="SF2837" /note="Code: F; COG: COG0207" /codon_start=1 /transl_table=11 /product="thymidylate synthase" /protein_id="NP_708616.1" /db_xref="GeneID:1025814" /translation="MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQDGFPL VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP TPDGRHIDQITTVLNQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLEVGDFVWTGGDTHLYSNHMDQTHL QLSREPRPLPKLIIKRKPESIFDYRFEDFEIEGYDPHPGVKAPVAI" misc_feature complement(2924725..2925516) /gene="thyA" /locus_tag="SF2837" /note="Thymidylate synthase [Nucleotide transport and metabolism]; Region: ThyA; COG0207" /db_xref="CDD:439977" gene complement(2925523..2926398) /gene="lgt" /locus_tag="SF2838" /db_xref="GeneID:1025806" CDS complement(2925523..2926398) /gene="lgt" /locus_tag="SF2838" /note="Code: M; COG: COG0682" /codon_start=1 /transl_table=11 /product="prolipoprotein diacylglyceryl transferase" /protein_id="NP_708617.1" /db_xref="GeneID:1025806" /translation="MTSSYLHFPEFDPVIFSIGPVALHWYGLMYLVGFIFAMWLATRR ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPQFMADPLYLFRVWDGGMSF HGGLIGVIVVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPNF PFAMLFPGSRTEDILLLQTNPQWQSIFDTYGVLPRHPSQLYELLLEGVVLFIILNLYI RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIVAGVI MMVWAYRRSPQQHVS" misc_feature complement(2925535..2926386) /gene="lgt" /locus_tag="SF2838" /note="prolipoprotein diacylglyceryl transferase; Reviewed; Region: PRK00052" /db_xref="CDD:234599" gene complement(2926549..2928795) /gene="ptsP" /locus_tag="SF2839" /db_xref="GeneID:1025805" CDS complement(2926549..2928795) /gene="ptsP" /locus_tag="SF2839" /note="Code: T; COG: COG3605" /codon_start=1 /transl_table=11 /product="fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain containing protein" /protein_id="NP_708618.1" /db_xref="GeneID:1025805" /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD HDRRCYYLMATRGLKKPRGRTVTLAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQLT ALFGQYRQTRIRALPAAPGVAIAEGWQDATLPLMEQVYQASTLDPALERERLTGALEE AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDTRLRRELFAEVDKGSVAEWAVKTVI EKFAEQFAALSDNYLKERAGDLRALGQRLLFHLDDANQGPNAWPERFILVADELSATT LAELPQDRLVGVVVRDGAANSHAAIMVRALGIPTVMGADIQPSVLHRRTLIVDGYRGE LLVDPEPVLLQEYQRLISEEIELSRLAEDDVNLPAQLKSGERIKVMLNAGLSPEHEEK LGSCIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLNILLPMVTSLDEVD EARRLIERAGREVEEMIGYEIPKPRIGIMLEVPSMVFMLPHLAKRVDFISVGTNDLTQ YILAVDRNNTRVANIYDSLHPAMLRALAMIAREAEIHGIDLRLCGEMAGDPMCVAILI GLGYRHLSMNGRSVARVKYLLRRIDFAEAENLAQRSLEAQLATEVRHQVAAFMERRGM GGLIRGGL" misc_feature complement(2926555..2928795) /gene="ptsP" /locus_tag="SF2839" /note="phosphoenolpyruvate--protein phosphotransferase; Region: PRK11061" /db_xref="CDD:182937" gene complement(2928808..2929338) /gene="ygdP" /locus_tag="SF2840" /db_xref="GeneID:1025838" CDS complement(2928808..2929338) /gene="ygdP" /locus_tag="SF2840" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="RNA pyrophosphohydrolase" /protein_id="NP_708619.1" /db_xref="GeneID:1025838" /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL QLVSGDAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMSLQE NTPKPQNASAYRRKRG" misc_feature complement(2928871..2929338) /gene="ygdP" /locus_tag="SF2840" /note="RNA pyrophosphohydrolase; Reviewed; Region: PRK00714" /db_xref="CDD:234820" gene 2930023..2930712 /gene="mutH" /locus_tag="SF2841" /db_xref="GeneID:1024298" CDS 2930023..2930712 /gene="mutH" /locus_tag="SF2841" /note="Code: L; COG: COG3066" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein" /protein_id="NP_708620.1" /db_xref="GeneID:1024298" /translation="MSQPRPLLSPPETEEQLLAQAQQLSGYTLGELAALDGLVTPENL KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVARLTG NSGVTWETSHVRHKLKRVLWIPVEGERSIPLAQRRVGSPLLWSPNEEEDRQLREDWEE LMDMIVLGQVERITARHGEYLQIRPKAANAKALTEAIGARGERILTLPRGFYLKKNFT SALLARHSLIQ" misc_feature 2930047..2930697 /gene="mutH" /locus_tag="SF2841" /note="DNA mismatch repair protein; Provisional; Region: PRK05070" /db_xref="CDD:179923" misc_feature order(2930152..2930160,2930164..2930169,2930176..2930181, 2930188..2930190,2930212..2930226,2930230..2930232, 2930251..2930253,2930257..2930262,2930266..2930268, 2930293..2930298,2930302..2930304,2930311..2930313, 2930368..2930370,2930407..2930409,2930542..2930550, 2930566..2930568,2930572..2930595,2930599..2930604, 2930641..2930643,2930656..2930658,2930662..2930667) /gene="mutH" /locus_tag="SF2841" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:411704" misc_feature order(2930188..2930190,2930230..2930232,2930251..2930253, 2930257..2930259,2930368..2930370) /gene="mutH" /locus_tag="SF2841" /note="active site" /db_xref="CDD:411704" gene 2930781..2931494 /locus_tag="SF2842" /db_xref="GeneID:1025800" CDS 2930781..2931494 /locus_tag="SF2842" /note="Code: P; COG: COG0861" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708621.1" /db_xref="GeneID:1025800" /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ RAHARRLGLAGAMVMRLALLASISWVTRLTNPLFTIFSQEISARDLILLLGGLFLIWK ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA VVIAVGVMMFAARSIGDFVERHPSVKMLALSFLILVGFTLILESFDIHVPKGYIYFAM FFSIAVESLNLIRNKKNPL" misc_feature 2930796..2931446 /locus_tag="SF2842" /note="Tellurite resistance membrane protein TerC [Inorganic ion transport and metabolism]; Region: TerC; COG0861" /db_xref="CDD:440622" gene 2931632..2931850 /locus_tag="SF2843" /db_xref="GeneID:1025801" CDS 2931632..2931850 /locus_tag="SF2843" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708622.1" /db_xref="GeneID:1025801" /translation="MKKWAVIISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPEIDD DTGLVSYHDQQGNAMQINRDDVSQIIER" misc_feature 2931635..2931847 /locus_tag="SF2843" /note="Bacterial protein of unknown function (DUF903); Region: DUF903; cl05512" /db_xref="CDD:471259" gene 2931958..2932998 /gene="tas" /locus_tag="SF2844" /db_xref="GeneID:1025802" CDS 2931958..2932998 /gene="tas" /locus_tag="SF2844" /note="Code: C; COG: COG0667" /codon_start=1 /transl_table=11 /product="aldo/keto reductase" /protein_id="NP_708623.1" /db_xref="GeneID:1025802" /translation="MQYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAVAQGI NLIDVAEMYPVPPRPETQGLTETYVGNWLAKHGSREKLIIASKVSGPSRNNDKGIRPD QALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVSLLDT LDALAEYQRAGKIRYIGVSNETAFGVMRYLHLADKHDLPRIVTIQNPYSLLNRSFEVG LAEVSQYEGVELLAYSCLGFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQTQKAVAA YVDIARRHGLDPAQMALAFVRRQPFVASTLLGATTMDQLKTNIESLHLELSEDVLAEI EAVHQVYTYPAP" misc_feature 2931958..2932995 /gene="tas" /locus_tag="SF2844" /note="putative aldo-keto reductase; Provisional; Region: tas; PRK10625" /db_xref="CDD:236727" misc_feature order(2932012..2932020,2932033..2932035,2932099..2932101, 2932114..2932116,2932216..2932218,2932351..2932353, 2932492..2932497,2932570..2932572,2932654..2932674, 2932681..2932683,2932687..2932689,2932714..2932722, 2932822..2932824,2932873..2932887,2932897..2932899, 2932909..2932911) /gene="tas" /locus_tag="SF2844" /note="active site" /db_xref="CDD:381320" misc_feature order(2932099..2932101,2932114..2932116,2932216..2932218, 2932351..2932353) /gene="tas" /locus_tag="SF2844" /note="catalytic tetrad [active]" /db_xref="CDD:381320" gene complement(2933031..2934221) /gene="ygeD" /locus_tag="SF2845" /db_xref="GeneID:1025795" CDS complement(2933031..2934221) /gene="ygeD" /locus_tag="SF2845" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="lysophospholipid transporter LplT" /protein_id="NP_708624.1" /db_xref="GeneID:1025795" /translation="MSESVHTNTSLWSKGMKAVIVAQFLSAFGDNALLFATLALLKAQ FYPEWSQPILQMVFVGAYILLAPFVGQVADSFAKGRVMMFANGLKLLGAASICFGINP FLGYTLVGVGAAAYSPAKYGILGELTTGSKLVKANGLMEASAIAAILLGSVAGGVLAD WHVLVALAACALAYGGAVVANIYIPKLAARPGQSWNLINMTRSFLNACTSLWCNGETR FSLVGTSLFWGAGVTLRFLLVLWVPVALGITDNATPTYLNAMVAIGIVVGAGAAAKLV TLETVSRCMPAGILIGVVVPIFSLQHELLPAYALLMLIGVLGGFFVVPLNALLQERGK KSVGAGNAIAVQNLGENSAMLLMLGIYSLAVMVGIPVVPIGIGFGALFALAITALWIW QRRH" misc_feature complement(2933034..2934188) /gene="ygeD" /locus_tag="SF2845" /note="lysophospholipid transporter LplT; Provisional; Region: PRK11195" /db_xref="CDD:236879" misc_feature complement(order(2933160..2933162,2933169..2933174, 2933181..2933186,2933193..2933195,2933244..2933246, 2933256..2933258,2933268..2933273,2933427..2933429, 2933439..2933441,2933514..2933516,2933523..2933531, 2933538..2933543,2933550..2933552,2933778..2933780, 2933787..2933792,2933799..2933801,2933859..2933861, 2933868..2933876,2933880..2933885,2934024..2934026, 2934120..2934122,2934129..2934134,2934141..2934146)) /gene="ygeD" /locus_tag="SF2845" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340863" gene complement(2934214..2936373) /gene="aas" /locus_tag="SF2846" /db_xref="GeneID:1026818" CDS complement(2934214..2936373) /gene="aas" /locus_tag="SF2846" /note="Code: IQ; COG: COG0318" /codon_start=1 /transl_table=11 /product="bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase" /protein_id="NP_708625.1" /db_xref="GeneID:1026818" /translation="MLFSFFRNLCRVLYRVRVTGDTQALKGERVLITPNHVSFIDGIL LGLFLPVRPVFAVYTSISQQWYMRWLKSFIDFVPLDPTQPMAIKHLVRLVEQGRPVVI FPEGRITTTGSLMKIYDGAGFVAAKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQI TLHILPPTQVAMPDAPRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLSAMYRFG AGKKCVEDVNFTPDSYRKLLTKTLFVGRILEKYSVEGERIGLMLPNAGISAAVIFGAI ARRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE DLKADVTTADKVWIFAHLLMPRLAQVKQQPEEEALILFTSGSEGHPKGVVHSHKSILA NVEQIKTIADFTTNDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPDL VYDRSCTVLFGTSTFLGHYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEEGGRLQLKGPNIMNG YLRVEKPGVLEVPTAENVRGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAKIAGEMV SLEMVEQLALGVSPDKVHATAIKSDASKGEALVLFTTDNELTRDKLQQYAREHGVPEL AVPRDIRYLKQMPLLGSGKPDFVTLKSWVDEAEQHDE" misc_feature complement(2934220..2936373) /gene="aas" /locus_tag="SF2846" /note="bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase; Region: PRK08043" /db_xref="CDD:181207" gene 2936959..2937990 /gene="galR" /locus_tag="SF2847" /db_xref="GeneID:1025799" CDS 2936959..2937990 /gene="galR" /locus_tag="SF2847" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator GalR" /protein_id="NP_708626.1" /db_xref="GeneID:1025799" /translation="MATIKDVARLAGVSVATVSRVINNSPKASEASRLAVHSAMESLS YHPNANARALAQQTTETVGLIVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQMPGMVLINRILPGFENRCIALDD RYGAWLATRHLIQQGHTRIGYLCSNHSISDAEDRLQGYYDALAESGIPANDRLVTFGE PDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGIDVPGEISLIGFDDVL VSRYVRPRLTTVRYPIVTMATQAAELALALADNRPLPEITNVFSPTLVRRHSVSTPSL EASHHATSD" misc_feature 2936959..2937987 /gene="galR" /locus_tag="SF2847" /note="HTH-type transcriptional regulator GalR; Region: PRK10727" /db_xref="CDD:182681" gene complement(2937997..2939259) /gene="lysA" /locus_tag="SF2848" /db_xref="GeneID:1025821" CDS complement(2937997..2939259) /gene="lysA" /locus_tag="SF2848" /note="Code: E; COG: COG0019" /codon_start=1 /transl_table=11 /product="diaminopimelate decarboxylase" /protein_id="NP_708627.1" /db_xref="GeneID:1025821" /translation="MPHSLFSTDTDLTAENLLRLPAEFGCPVWVYDAQIIRRQIAALK QFEVVRFAQKACSNIHILRLMREQGVKVDSVSLGEIERALAAGYNPQTHPDDIVFTAD VIDQATLERVSELQIPVNAGSVDTLDQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE NSKHGIWYTDLPAALDVIQRHHLQLVGIHMHIGSGVDYAHLEQVCGAMVRQVIEFGQD LQAISAGGGLSIPYQQGEEAVDTEHYYGLWNAAREQIARHLGHPVKLEIEPGRFLVAQ SGVLITQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHHISALAADGRSLEHAPTVE TVVAGPLCESGDVFTQQEGGNVETRALPEVKAGDYLVLHDTGAYGASMSSNYNSRPLL PEVLFDNGQARLIRRRQTIEELLALELL" misc_feature complement(2938027..2939256) /gene="lysA" /locus_tag="SF2848" /note="diaminopimelate decarboxylase; Region: lysA; TIGR01048" /db_xref="CDD:273415" misc_feature complement(order(2938102..2938104,2938114..2938116, 2938126..2938128,2938234..2938236,2938327..2938329, 2938339..2938341,2938447..2938458,2938579..2938584, 2938678..2938680,2938687..2938689,2938693..2938695, 2938834..2938836,2938960..2938962,2939041..2939043, 2939098..2939100,2939104..2939106)) /gene="lysA" /locus_tag="SF2848" /note="active site" /db_xref="CDD:143501" misc_feature complement(order(2938126..2938128,2938234..2938236, 2938447..2938458,2938579..2938584,2938678..2938680, 2938687..2938689,2938693..2938695,2938834..2938836, 2938960..2938962,2939041..2939043,2939098..2939100, 2939104..2939106)) /gene="lysA" /locus_tag="SF2848" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143501" misc_feature complement(order(2938102..2938104,2938114..2938116, 2938126..2938128,2938231..2938236,2938327..2938329, 2938339..2938341,2938447..2938449,2938678..2938680, 2938687..2938689,2939098..2939100)) /gene="lysA" /locus_tag="SF2848" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143501" misc_feature complement(order(2938234..2938236,2939098..2939100)) /gene="lysA" /locus_tag="SF2848" /note="catalytic residues [active]" /db_xref="CDD:143501" misc_feature complement(order(2938087..2938089,2938096..2938107, 2938111..2938119,2938222..2938224,2938228..2938245, 2938369..2938371,2938375..2938377,2938396..2938398, 2938402..2938404,2938765..2938776,2938885..2938887, 2938894..2938896,2938936..2938938,2938948..2938956, 2939023..2939028,2939032..2939037,2939080..2939085)) /gene="lysA" /locus_tag="SF2848" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143501" gene 2939381..2940316 /gene="lysR" /locus_tag="SF2849" /db_xref="GeneID:1025828" CDS 2939381..2940316 /gene="lysR" /locus_tag="SF2849" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_708628.1" /db_xref="GeneID:1025828" /translation="MAAVNLRHIEIFHAVMTAGSLTEAAHLLHTSQPTVSRELARFEK VIGLKLFERVRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLP VFSQSFLPQLLQPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHTPTGTER TELLSLDEVCVLPPGHPLAVKKVLTPDDFQGENYISLSRTDSYRQLLDQLFTEHQVKR RMIVETHSAASVCAMVRAGVGISVVNPLTALDYAASGLVVRRFSIAVPFTVSLIRPLH RPSSALVQAFSGHLQAGLPKLVTSLDAILSSATTA" misc_feature 2939381..2940307 /gene="lysR" /locus_tag="SF2849" /note="DNA-binding transcriptional regulator LysR; Provisional; Region: PRK11013" /db_xref="CDD:236819" gene complement(2940303..2940995) /gene="ygeA" /locus_tag="SF2850" /db_xref="GeneID:1025833" CDS complement(2940303..2940995) /gene="ygeA" /locus_tag="SF2850" /note="Code: M; COG: COG1794" /codon_start=1 /transl_table=11 /product="racemase" /protein_id="NP_708629.1" /db_xref="GeneID:1025833" /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQRLGGLHSAQMLLHSVD FHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCTLPFL HIADATGRAITGAGMTRVALLGTRYTMEQDFYRGRLTEQFSINCLIPEADERAKINQI IFEELCLGQFTEASRAYYAQVIARLAEQGAQGVIFGCTEIGLLVPEERSVLPVFDTAA IHAEDAVAFMLS" misc_feature complement(2940306..2940995) /gene="ygeA" /locus_tag="SF2850" /note="putative racemase; Provisional; Region: PRK10200" /db_xref="CDD:182300" gene complement(2941124..2942542) /gene="araE" /locus_tag="SF2851" /db_xref="GeneID:1025850" CDS complement(2941124..2942542) /gene="araE" /locus_tag="SF2851" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="low-affinity L-arabinose transport system proton symport protein" /protein_id="NP_708630.2" /db_xref="GeneID:1025850" /translation="MVTINTESALTPRSLRDTRRMNMFVSVAAAVAGLLFGLDIGVIA GALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLG SIGSAFATSVEMLIAARVVLGIAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLG IVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAEKGRHIEAEEVL RMLRDTSEKAREELNEIRESLKLKQGGWALFKINRNVRRAVFLGMLLQAMQQFTGMNI IMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVM ALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKC RDFGITCSTTTNWVSNMIIGAAFLTLLDSIGAAGTFWLYTALNIAFVGITFWLIPETK NVTLEHIERKLMAGEKLRNIGV" misc_feature complement(2941172..2942527) /gene="araE" /locus_tag="SF2851" /note="MFS transporter, sugar porter (SP) family; Region: SP; TIGR00879" /db_xref="CDD:273317" misc_feature complement(order(2941319..2941321,2941328..2941333, 2941400..2941402,2941412..2941417,2941424..2941429, 2941622..2941624,2941706..2941711,2941718..2941723, 2941733..2941738,2942060..2942062,2942069..2942074, 2942081..2942083,2942423..2942425,2942435..2942437)) /gene="araE" /locus_tag="SF2851" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340873" gene complement(2942857..2943618) /gene="kduD" /locus_tag="SF2852" /db_xref="GeneID:1025793" CDS complement(2942857..2943618) /gene="kduD" /locus_tag="SF2852" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="2-deoxy-D-gluconate 3-dehydrogenase" /protein_id="NP_708631.1" /db_xref="GeneID:1025793" /translation="MILSAFSLQGKVAVVTGCDTGLGQGMALGLAQAGCDIVGINIVE PTETIEQVTALGRRFLSLTADLRKIDGIPGLLDRAVAEFGHIDILVNNAGLIRREDAL EFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTA SKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRW GLPSDLMGPVVFLASSASDYVNGYTIAVDGGWLAR" misc_feature complement(2942860..2943618) /gene="kduD" /locus_tag="SF2852" /note="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD; Region: PRK08993" /db_xref="CDD:181605" misc_feature complement(order(2943031..2943042,2943046..2943057, 2943133..2943135,2943145..2943147,2943184..2943192, 2943274..2943276,2943334..2943345,2943421..2943429, 2943490..2943498,2943553..2943564,2943568..2943570)) /gene="kduD" /locus_tag="SF2852" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187605" misc_feature complement(order(2943091..2943099,2943103..2943111, 2943115..2943120,2943127..2943132,2943139..2943144, 2943151..2943156,2943172..2943180,2943235..2943237, 2943244..2943246,2943253..2943258,2943265..2943267, 2943280..2943282,2943289..2943294,2943301..2943303, 2943307..2943321,2943412..2943414)) /gene="kduD" /locus_tag="SF2852" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187605" misc_feature complement(order(2943133..2943135,2943145..2943147, 2943184..2943186,2943271..2943273)) /gene="kduD" /locus_tag="SF2852" /note="active site" /db_xref="CDD:187605" gene complement(2943648..2944484) /gene="kduI" /locus_tag="SF2853" /db_xref="GeneID:1025798" CDS complement(2943648..2944484) /gene="kduI" /locus_tag="SF2853" /codon_start=1 /transl_table=11 /product="5-keto-4-deoxyuronate isomerase" /protein_id="NP_708632.1" /db_xref="GeneID:1025798" /translation="MDVRQSIHGAHAKTLDTQGLRNEFLVEKVFVADEYTMVYSHIDR IIVGGIMPITKTVSVGGEVGKQLGVSYFLERRELGVINIGGAGTITVDGQCYEIGHRD ALYVGKGAKEVVFASIDTATPAKFYYNCAPAHTTYPTKKVTPDEVSPVTLGDNLTSNR RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYFYFNMDDDACVFH MMGQPQETRHIVMHNEQAVISPSWSIHSGVGTKAYTFIWGMVGENQVFNDMDHVGVKD LR" misc_feature complement(2943651..2944484) /gene="kduI" /locus_tag="SF2853" /note="5-keto-4-deoxyuronate isomerase; Provisional; Region: PRK00924" /db_xref="CDD:179169" gene complement(2944771..2945952) /gene="yqeF" /locus_tag="SF2854" /db_xref="GeneID:1025837" CDS complement(2944771..2945952) /gene="yqeF" /locus_tag="SF2854" /note="Code: I; COG: COG0183" /codon_start=1 /transl_table=11 /product="acyltransferase" /protein_id="NP_708633.2" /db_xref="GeneID:1025837" /translation="MKDVVIVGALRTPIGCFRGALAGHSAVELGSLVVKALIERTGVP AYAVDEVILGQVLTAGAGQNPARQSAIKGGLPNSVSAITINDVCGSGLKALHLATQAI QCGEADIVIAGGQENMSRAPHVLTDSRTGEQLGNSQLVDSLVHDGLWDAFNDYHIGVT AENLAREYGISRQLQDAYALSSQQKARAAIDAGRFKDEIVPVMIQSNGQTLVVDTDEQ PRTDASAEGLARLNPSFDSLGSVTAGNASSINDGAAAVMMMSEAKARALNLPVLARIR AFASVGVDPALMGIAPVYATRRCLERVGWQLADVDLIEANEAFAAQALSVGKMLEWDE RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRNARKGLATLCIGGGQGVALTIERD E" misc_feature complement(2944777..2945952) /gene="yqeF" /locus_tag="SF2854" /note="putative acyltransferase; Provisional; Region: PRK05790" /db_xref="CDD:180261" gene 2946207..2947436 /locus_tag="SF2855" /pseudogene="unknown" /db_xref="GeneID:1025834" mobile_element 2948006..2949263 /mobile_element_type="insertion sequence:IS3" gene 2948062..2948370 /locus_tag="SF2856" /db_xref="GeneID:1025827" CDS 2948062..2948370 /locus_tag="SF2856" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence IS3 transposase InsE" /protein_id="NP_708635.1" /db_xref="GeneID:1025827" /translation="MTHMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSL YESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK " misc_feature 2948095..2948352 /locus_tag="SF2856" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2948367..2949233 /locus_tag="SF2857" /db_xref="GeneID:1025820" CDS 2948367..2949233 /locus_tag="SF2857" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence IS3A transposase InsF" /protein_id="NP_708636.1" /db_xref="GeneID:1025820" /translation="MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQ FRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKF SPVSYRAHGLPVSENLLEQDFYASGPNQKWAGDITYLRTDEGWLYLAVVIDLWSRAVI GWSMSPRMTAQLPCDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSM SAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGG LSPEQFENQNLA" misc_feature <2948367..2949215 /locus_tag="SF2857" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(2949247..2949840) /locus_tag="SF2858" /db_xref="GeneID:1025831" CDS complement(2949247..2949840) /locus_tag="SF2858" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708637.1" /db_xref="GeneID:1025831" /translation="MVIYAFNKRLMDYFMKGKSALTLLLAGIFSCGTCQATEAEVTSE SVFNILNSRGAATDKSYLSLNPDKYPNYRLLIHSAKLKNEIKSHYTKDETQGLLTLTE NTRKLTLTEKPWGTFILASTFEDDKTAAETHYDAVWLRDSLWGYMALVSDQGNSVAAK KVLLTLWGYMSTPDQIKRMQDIISNPKRLDGILILPT" gene complement(2950472..2951461) /locus_tag="SF2859" /db_xref="GeneID:1025826" CDS complement(2950472..2951461) /locus_tag="SF2859" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708638.1" /db_xref="GeneID:1025826" /translation="MNMTKNAFQFGIEPVRITDTDNIQVNEGLPTNADPQVYALQLAK TVKAMLNGVLKDAQDNIPFPVEVLPTRNSLPTPIIAHTLADRSVLVPVRGGKRPEVVT APSGTEITVEPIEQAILVSHQTKLWDQKSTTGFTQGTLQQDALNICDNVIRTINSKMV DVLESSKLLKTVELPALTGSLTAKADAIMDALYENTESSFGSEVSDYGIIAHESHLKA LSRLAAKQGFGGEDAIVDMLGTDVAYYNGEDRGVFMMAKRFTALSFGCFRHDGESITV VLSRDGDSQSHDLEILGKVFVVAEAATTIKMGTGSATAVLPVVKRLSFTKEAN" gene complement(2951545..2952036) /locus_tag="SF2860" /db_xref="GeneID:1023543" CDS complement(2951545..2952036) /locus_tag="SF2860" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708639.1" /db_xref="GeneID:1023543" /translation="MMFNNNNWKLSVTDINLYENTVSLDGQSYPLSLAIKTLIPGYLS GLPSTSREAMELLEALAEAGVTIGNFFSNDLMTAYQRRQMNKRAEAERIAKELASQKE RTREMFMTEDEWQKELQRREQVKAERRTYGENLRSATHSAGRSRAAIVADLESGGNWM DSL" gene complement(2952334..2953080) /locus_tag="SF2861" /db_xref="GeneID:1025829" CDS complement(2952334..2953080) /locus_tag="SF2861" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708640.1" /db_xref="GeneID:1025829" /translation="MSQQEISIINLDQLVSMTSVEIAELTGKEHKHVLRDIRNMVEEL NGAKTEHCSTLSSELNGSKFGLVGEEVYKDAKGESRTMYRLDRKHTFILVAGYSVHLR AKCYDHIQTLERRVLQLEDQKKRAAIQSANRRGVTWGDYCKTYGLPAQKLMTALLQHR GLFRKNPISNEWSVNPKYSDCFRIIKPSDQKFSAGGYNFRFNAKGLEVFGKPEMVDKM RGILIAFTGTDQQKQEHLLKLAQSGKVEGI" misc_feature complement(<2952790..2953080) /locus_tag="SF2861" /note="Phage regulatory protein Rha [Mobilome: prophages, transposons]; Region: pRha; COG3646" /db_xref="CDD:442863" mobile_element 2953406..2954658 /mobile_element_type="insertion sequence:IS911" gene 2953442..2953780 /locus_tag="SF2862" /db_xref="GeneID:1025817" CDS 2953442..2953780 /locus_tag="SF2862" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_708641.1" /db_xref="GeneID:1025817" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature 2953481..2953750 /locus_tag="SF2862" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2954073..2954650 /locus_tag="SF2864" /pseudogene="unknown" /db_xref="GeneID:1026819" gene complement(2955455..2955787) /locus_tag="SF2865" /db_xref="GeneID:1025849" CDS complement(2955455..2955787) /locus_tag="SF2865" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708644.2" /db_xref="GeneID:1025849" /translation="MASEDWQREHHCRTGIIFTAFAIEAMFIFYRKQVDPGYDKTQKE CRKTMHKNTLKLCGINNYMGTKPYQIIKECLEVRDAIAHGDSYTSSFNFSADHLDNQD DIAKVSWR" gene complement(2955906..2957516) /locus_tag="SF2866" /db_xref="GeneID:1025824" CDS complement(2955906..2957516) /locus_tag="SF2866" /codon_start=1 /transl_table=11 /product="integrase" /protein_id="NP_708645.1" /db_xref="GeneID:1025824" /translation="MLKSRTYLYQRNGVFYIRLRMKTTSRLTASLPSHNRYKLASVSL RTKDRRTAMAHSRHIKSALKAIHADNPNASYEELREHLKTIVEWELSVSRDDLNDPES YQLYVDQYDDIKSNLREAVATERLTVDQHRYINDVIGVLKACQDRLNGDSSGLLSYLE PETGSLRPSVSLSVLAEPEVPEPKALTLASLIEQYEQENAQNWKPATLSENRASHSTL IEIFDYLDIQDVGKATRADMLRVREVLQQLPKNRKQRFKSMPLSDLLNRESKTDCLDV VTINNKYLIKMAAVFKWAVRNDLIAKNLTEGLELKVPQRKASDARDAFSPEQVGQLLV AAKAYSQKTSGKPYHYYVTALAAITGARLNEVAQLQVKDVRTTEAGTVFIHINEDDSS LPGKSIKNAHSDRCVPLVDGAYGFVLADFMSLVEDRRKTEGDNAMVFNGLKLMKNGYG EQVSKWFNRTLLPKVLADRSGLAFHSFRHTVATQLKQHGVELAYAQAIMGHSSGSITY DRYAKEVEVETLKEKLAESLSVKKIDGK" misc_feature complement(2957322..2957498) /locus_tag="SF2866" /note="Domain of unknown function (DUF6538); Region: DUF6538; pfam20172" /db_xref="CDD:466323" misc_feature complement(2955978..2956547) /locus_tag="SF2866" /note="Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain; Region: INT_C_like_1; cd01184" /db_xref="CDD:271184" misc_feature complement(order(2955984..2955986,2956080..2956085, 2956092..2956094,2956431..2956433)) /locus_tag="SF2866" /note="active site" /db_xref="CDD:271184" gene complement(2957651..2957724) /locus_tag="SF4506" /db_xref="GeneID:3161796" tRNA complement(2957651..2957724) /locus_tag="SF4506" /product="tRNA-Gly" /codon_recognized="GGG" /db_xref="GeneID:3161796" gene complement(2957803..2958582) /locus_tag="SF2867" /db_xref="GeneID:1025880" CDS complement(2957803..2958582) /locus_tag="SF2867" /note="Code: M; COG: COG0739" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_708646.1" /db_xref="GeneID:1025880" /translation="MFFKRGKILSAGRLNKKSLGIVMFLSVGLLLAGCSGSKSSDTGT YSGSVYTVKRGDTLYRISRTTGTSVKELARLNGISPPYTIEVGQKLKLGGAKSSSSTR KSTAKSTTKTASVTPSSAVPKSSWPPVGQRCWLWPTTGKVIMPYSTADGGNKGIDISA PRGTPIYAAGAGKVVYVGNQLRGYGNLIMIKHSEDYITAYAHNDTMLVNNGQSVKAGQ KIATMGSTDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC" misc_feature complement(2957806..2958540) /locus_tag="SF2867" /note="amidase activator ActS; Region: amid_act_ActS; NF040883" /db_xref="CDD:468819" gene 2958973..2961270 /locus_tag="SF2868" /db_xref="GeneID:1025870" CDS 2958973..2961270 /locus_tag="SF2868" /note="Code: C; COG: COG1529" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase subunit XdhA" /protein_id="NP_708647.1" /db_xref="GeneID:1025870" /translation="MEAREATATGESCMRVDAIAKVTGRARYTDDYVMAGMCYAKYVR SPIAHGYAVSINDEQARSLPGVLAIFTWEDVPDIPFATAGHAWTLDENKRDTADRALL TRHVRHHGDAVAIVVARDELTAEKAAQLVSIEWQELPVITTPEAALTEDAAPIHNGGN LLKQSTMSTGNVQQTIDAADYQVQGHYQTPVIQHCHMESVTSLAWMEDDSRITIVSST QIPHIVRRVVGQALDIPWSCVRVIKPFVGGGFGNKQDVLEEPMAAFLTSKLGGIPVKV SLSREECFLATRTRHAFTIDGQMGVNRDGTLKGYSLDVLSNTGAYASHGHSIASAGEN KVAYLYPRCAYAYSSKTCYTNLPSAGAMRGYGAPQVVFAVESMLDDAATALGIDPVEI RLRNAAREGDANPLTGKRICSAGLPECLEKGRKIFEWEKRRAECQNQQGNLRRGVGVA CFSYTSNTWPVGVEIAGARLLMNQDGTINVQSGATEIGQGADTVFSQMVAETVGVPVS DVRVISTQDTDVTPFDPGAFASRQSYVAAPALRSAALLLKEKIIAHAAVMLHQSAMNL TLIKGHIVLVERPEEPLMSLKDLAMDAFYHPERGGQLSAESSIKTTTNPPAFGCTFVD LTVDIALCKVTINRILNVHDSGHILNPLLAEGQVHGGMGMGIGWALFEEMIIDAKSGV VRNPNLLDYKMPTMPDLPQLESAFVEINEPQSAYGHKSLGEPPIIPVAAAIRNAVKMA TGVAINTLPLTPKRLYEEFHLAGLI" misc_feature 2958991..2961267 /locus_tag="SF2868" /note="xanthine dehydrogenase subunit XdhA; Provisional; Region: PRK09970" /db_xref="CDD:236637" gene 2961281..2962159 /gene="ygeT" /locus_tag="SF2869" /db_xref="GeneID:1025825" CDS 2961281..2962159 /gene="ygeT" /locus_tag="SF2869" /note="Code: C; COG: COG1319" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase subunit XdhB" /protein_id="NP_708648.1" /db_xref="GeneID:1025825" /translation="MFDFASYHRAATLADAINLLADNPQAKLLAGGTDVLIQLHHHND RYRHIVDIHNLAELRGITLAEDGSLRIGSATTFTQLIEDPITQRHLPALCAAATFIAG PQIRNVATYGGNICNGATSADSATPTLIYDAKLEIHSPRGVRFVPINGFHTGPGKVSL EHDEILVAFHFPPQPKEHAGSAHFKYAMRDAMDISTIGCAAHCRLDNGNFSELRLAFG VAAPTPIRCQHAEQTAQNAPLNLQTLEAISESVLQDVAPHSSWRASKEFRLHLIQTMT KKVISEAVAAAGGKLQ" misc_feature 2961281..2962153 /gene="ygeT" /locus_tag="SF2869" /note="xanthine dehydrogenase subunit XdhB; Provisional; Region: PRK09971" /db_xref="CDD:182175" gene 2962156..2962635 /locus_tag="SF2870" /db_xref="GeneID:1025818" CDS 2962156..2962635 /locus_tag="SF2870" /note="Code: C; COG: COG2080" /codon_start=1 /transl_table=11 /product="xanthine dehydrogenase subunit XdhC" /protein_id="NP_708649.1" /db_xref="GeneID:1025818" /translation="MNHSETITTECTINGMPFQLHAAPGTPLSELLREQGLLSVKQGC CVGECGACTVLVDGTAIDSCLYLAAWAEGKEIRTLEGEAKGGKLSHVQQAYAKSGTVQ CGFCTPGLIMATTAMLAKPREKPLTITEIRRGLAGNLCRCTGYQMIVNTVLDCEKTK" misc_feature 2962156..2962632 /locus_tag="SF2870" /note="xanthine dehydrogenase iron sulfur-binding subunit XdhC; Region: PRK09908" /db_xref="CDD:182139" mobile_element 2962693..2963246 /note="partial" /mobile_element_type="insertion sequence:IS1" gene 2962748..2963023 /gene="insA" /locus_tag="SF2871" /db_xref="GeneID:1025816" CDS 2962748..2963023 /gene="insA" /locus_tag="SF2871" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708650.1" /db_xref="GeneID:1025816" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 2962769..>2963020 /gene="insA" /locus_tag="SF2871" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" mobile_element complement(2963247..2964577) /mobile_element_type="insertion sequence:IS2" gene complement(2963258..2964163) /locus_tag="SF2872" /db_xref="GeneID:1025815" CDS complement(2963258..2964163) /locus_tag="SF2872" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_708651.1" /db_xref="GeneID:1025815" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(2963261..2964163) /locus_tag="SF2872" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(2964121..2964531) /locus_tag="SF2873" /db_xref="GeneID:1025841" CDS complement(2964121..2964531) /locus_tag="SF2873" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_708652.3" /db_xref="GeneID:1025841" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(2964124..2964486) /locus_tag="SF2873" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" mobile_element 2964578..2964796 /note="partial" /mobile_element_type="insertion sequence:IS1" gene 2965213..2966730 /gene="ygfU" /locus_tag="SF2874" /db_xref="GeneID:1025886" CDS 2965213..2966730 /gene="ygfU" /locus_tag="SF2874" /note="Code: F; COG: COG2233" /codon_start=1 /transl_table=11 /product="permease" /protein_id="NP_708653.1" /db_xref="GeneID:1025886" /translation="MCLDSFINVNGCFLFWRAKGETLMSAIDSQLPSSSGQDRPTDEV DRILSPGKLIILGLQHVLVMYAGAVAVPLMIGDRLGLSKDAIAMLISSDLFCCGIVTL LQCIGIGRFMGIRLPVIMSVTFAAVTPMIAIGMNPDIGLLGIFGATIAAGFITTLLAP LIGRLMPLFPPLVTGVVITSIGLSIIQVGIDWAAGGKGNPQYGNPVYLGISFAVLIFI LLITRYAKGFMSNVAVLLGIVFGFLLSWMMNEVNLSGLHDASWFAIVTPMSFGMPIFD PVSILTMTAVLIIVFIESMGMFLALGEIVGRKLSSHDIICGLRVDGVGTMIGGTFNSF PHTSFSQNVGLVSVMRVHSRWVCISSGIILILFGMVPKMAVLVASIPQFVLGGAGLVM FGMVLATGIRILSRCNYTTNRYNLYIVAISLGVGMTPTLSHDFFSKLPAVLQPLLHSG IMLATLSAVVLNVFFNGYQHHADLVKESVSDKDLEVRTVRMWLLMRKLKKNEHGE" misc_feature 2965381..2966610 /gene="ygfU" /locus_tag="SF2874" /note="xanthine permease; Region: pbuX; TIGR03173" /db_xref="CDD:274468" gene 2966980..2967528 /locus_tag="SF2875" /db_xref="GeneID:1025913" CDS 2966980..2967528 /locus_tag="SF2875" /note="Code: I; COG: COG1443" /codon_start=1 /transl_table=11 /product="isopentenyl-diphosphate delta-isomerase" /protein_id="NP_708654.1" /db_xref="GeneID:1025913" /translation="MQTEHVILLNAQGVPTGTLEKYAAHTADTLLHLAFSSWLFNAKG QLLVTRRALSKKAWPGVWTNSVCGHPQLGESSEDAVIRRCRYELGVEITPPESIYPDF RYRATDPRGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLRGIDATPWAFSP WMVMQATNREARIRLSAFTQLK" misc_feature 2966980..2967519 /locus_tag="SF2875" /note="isopentenyl-diphosphate Delta-isomerase; Region: PRK03759" /db_xref="CDD:235156" gene complement(2967571..2969088) /gene="lysS" /locus_tag="SF2876" /db_xref="GeneID:1025848" CDS complement(2967571..2969088) /gene="lysS" /locus_tag="SF2876" /note="Code: J; COG: COG1190" /codon_start=1 /transl_table=11 /product="lysyl-tRNA synthetase" /protein_id="NP_708655.1" /db_xref="GeneID:1025848" /translation="MSEQHAQGADAVVDLNNELKTRREKLANLREQGIAFPNDFRRDH TSDQLHAEFDGKENEELEALNIEVAVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL QDQEARYRQRYLDLISNDESRNTFKVRSQILSGIRQFMVNRGFMEVETPMMQVIPGGA AARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT MMELYMAYADYKDLIELTESLFRTLAQDILGKTEVTYGDVTLDFGKPFEKLTMREAIK KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFEEVAEAHLIQPTFITE YPAEVSPLARRNDINPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVAAKDAG DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK" misc_feature complement(2967580..2969049) /gene="lysS" /locus_tag="SF2876" /note="lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484" /db_xref="CDD:234778" misc_feature complement(2968450..2968464) /gene="lysS" /locus_tag="SF2876" /note="motif 1; other site" /db_xref="CDD:238398" misc_feature complement(order(2967646..2967648,2967802..2967804, 2967814..2967816,2967823..2967825,2967844..2967846, 2968264..2968266,2968276..2968278,2968294..2968296, 2968300..2968302,2968366..2968368)) /gene="lysS" /locus_tag="SF2876" /note="active site" /db_xref="CDD:238398" misc_feature complement(2968294..2968305) /gene="lysS" /locus_tag="SF2876" /note="motif 2; other site" /db_xref="CDD:238398" misc_feature complement(2967646..2967657) /gene="lysS" /locus_tag="SF2876" /note="motif 3; other site" /db_xref="CDD:238398" gene complement(2969098..2969979) /locus_tag="SF2877" /db_xref="GeneID:1025823" CDS complement(2969098..2969979) /locus_tag="SF2877" /codon_start=1 /transl_table=11 /product="peptide chain release factor" /protein_id="YP_008439277.1" /db_xref="GeneID:1025823" /translation="MKQGLEDVSGLLELAVEADDEETFNEAVAELDALEEKLAQLEFR RMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVA GIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDI EINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQ MKAKLYELEMQKKNAEKQAMEDNKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQAV LDGSLDQFIEASLKAGL" misc_feature complement(2969101..2969979) /locus_tag="SF2877" /note="This domain is found in peptide chain release factors; Region: PCRF; cl40670" /db_xref="CDD:477417" gene complement(2970287..2972020) /gene="recJ" /locus_tag="SF2878" /db_xref="GeneID:1025877" CDS complement(2970287..2972020) /gene="recJ" /locus_tag="SF2878" /note="Code: L; COG: COG0608" /codon_start=1 /transl_table=11 /product="ssDNA exonuclease RecJ" /protein_id="NP_708656.1" /db_xref="GeneID:1025877" /translation="MKQQIQLRRREVDETADLPAELPPLLRRLYASRGVRSAQELERS VKGMLPWQQLSGVEKAVEILYNAFREGTRIIVVGDFDADGATSTALSVLAMRSLGCSN IDYLVPNRFEDGYGLSPEVVDQAHARGAQLIVTVDNGISSHAGVEHARSLGIPVIVTD HHLPGDTLPAAEAIINPNLRDCNFPSKSLAGVGVAFYLMLALRTFLRDQGWFDERGIA IPNLAELLDLVALGTVADVVPLDANNRILTWQGMSRIRAGKCRPGIKALLEVANRDAQ KLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNIGEARVLANELDALNQTRKEIEQ GMQVEALTLCEKLERSRDTLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG DGTLKGSGRSIQGLHMRDALERLDTLYPGMMLKFGGHAMAAGLSLEEDKFELFQQRFG ELVTEWLAPSLLQGEVVSDGPLSPAEMTMEVAQLLRDAGPWGQMFPEPLFDGHFRLLQ QRLVGERHLKVMVEPVGGGPLLDGIAFNVDTALWPDNGVREVQLAYKLDINEFRGNRS LQIIIDNIWPI" misc_feature complement(2970290..2972014) /gene="recJ" /locus_tag="SF2878" /note="single-stranded-DNA-specific exonuclease RecJ; Region: PRK11070" /db_xref="CDD:182944" gene complement(2972026..2972736) /gene="dsbC" /locus_tag="SF2879" /db_xref="GeneID:1025889" CDS complement(2972026..2972736) /gene="dsbC" /locus_tag="SF2879" /note="Code: O; COG: COG1651" /codon_start=1 /transl_table=11 /product="protein disulfide isomerase" /protein_id="NP_708657.1" /db_xref="GeneID:1025889" /translation="MKKGFMLFTLLAAFSGFAQADDAAIQQTLAKMGIKSSDIQPAPV AGMKTVLTNSGVLYITDDGKHIIQGPMYDVSGTAPVNVTNKMLLKQLNALEKEMIVYK APQEKHVITVFTDITCGYCHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIW CAKDKNKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQP PKDMKEFLDEHQKMTSGK" misc_feature complement(2972044..2972736) /gene="dsbC" /locus_tag="SF2879" /note="protein disulfide isomerase II DsbC; Provisional; Region: PRK10877" /db_xref="CDD:182802" misc_feature complement(order(2972521..2972604,2972611..2972637)) /gene="dsbC" /locus_tag="SF2879" /note="dimerization domain [polypeptide binding]; other site" /db_xref="CDD:239318" misc_feature complement(2972521..2972544) /gene="dsbC" /locus_tag="SF2879" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:239318" misc_feature complement(order(2972374..2972376,2972383..2972385)) /gene="dsbC" /locus_tag="SF2879" /note="catalytic residues [active]" /db_xref="CDD:239318" gene complement(2972761..2973657) /gene="xerD" /locus_tag="SF2880" /db_xref="GeneID:1025811" CDS complement(2972761..2973657) /gene="xerD" /locus_tag="SF2880" /note="Code: L; COG: COG0582" /codon_start=1 /transl_table=11 /product="site-specific tyrosine recombinase XerD" /protein_id="NP_708658.1" /db_xref="GeneID:1025811" /translation="MKQELARIEQFLDALWLEKNLAENTLNAYRRDLSMMVEWLHHRG LTLATAQSDDLQALLAERLEGGYKATSSARLLSAVRRLFQYLYREKFREDDPSAHLAS PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT QIYTHVATERLRQLHQQHHPRA" misc_feature complement(2972764..2973657) /gene="xerD" /locus_tag="SF2880" /note="tyrosine recombinase; Region: xerD; PRK00283" /db_xref="CDD:234713" misc_feature complement(order(2972821..2972823,2972914..2972919, 2972926..2972928,2973214..2973216)) /gene="xerD" /locus_tag="SF2880" /note="active site" /db_xref="CDD:271179" gene 2973769..2974290 /gene="fldB" /locus_tag="SF2881" /db_xref="GeneID:1026820" CDS 2973769..2974290 /gene="fldB" /locus_tag="SF2881" /note="Code: C; COG: COG0716" /codon_start=1 /transl_table=11 /product="flavodoxin FldB" /protein_id="NP_708659.1" /db_xref="GeneID:1026820" /translation="MNMGLFYGSSTCYTEMAAEKIRDIIGPELVTLHNLKDDSPKLME QYDVLILGIPTWDFGEIQEDWEAVWDQLDDLNLEGKIIALYGLGDQLGYGEWFLDALG MLHDKLSTKGVKFVGYWPTEGYEFTSPKPVIADGQLFVGLALDETNQYDLSDERIQSW CEQILNEMAEHYA" misc_feature 2973769..2974284 /gene="fldB" /locus_tag="SF2881" /note="flavodoxin FldB; Provisional; Region: PRK12359" /db_xref="CDD:183471" gene complement(2974330..2974737) /locus_tag="SF2882" /db_xref="GeneID:1025845" CDS complement(2974330..2974737) /locus_tag="SF2882" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708660.1" /db_xref="GeneID:1025845" /translation="MVLWQSDLRVSWRAQWLSLLIHGLVAAVILLMPWPLSYTPLWMV LLSLVVFDCVRSQRCINARQGEIRLLMDGRLRWQGQEWSIVKAPWMIKSGMMLRLRSD GGKRQHLWLAADSMDEAEWRDLRRILLQQETQR" misc_feature complement(2974345..2974734) /locus_tag="SF2882" /note="Membrane-bound toxin component of toxin-antitoxin system; Region: Cpta_toxin; pfam07254" /db_xref="CDD:462123" gene complement(2974718..2974984) /gene="ygfY" /locus_tag="SF2883" /db_xref="GeneID:1025902" CDS complement(2974718..2974984) /gene="ygfY" /locus_tag="SF2883" /note="Code: S; COG: COG2938" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708661.1" /db_xref="GeneID:1025902" /translation="MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRIFI RLLECDDPDLFNWLMNHGKPADAELEIMVRLIQTRNRERGPVAI" misc_feature complement(2974721..2974936) /gene="ygfY" /locus_tag="SF2883" /note="FAD assembly factor SdhE; Region: PRK10878" /db_xref="CDD:182803" gene 2975227..2976207 /gene="ygfZ" /locus_tag="SF2884" /db_xref="GeneID:1025887" CDS 2975227..2976207 /gene="ygfZ" /locus_tag="SF2884" /note="Code: R; COG: COG0354" /codon_start=1 /transl_table=11 /product="global regulator" /protein_id="NP_708662.1" /db_xref="GeneID:1025887" /translation="MAFTPFPPRQPTASARLPLTLMTLDDWALATITGADSEKYMQGQ VTADVSQMAEDQHLLAAHCDAKGKMWSNLRLFRDGDGFAWIERRSVREPQLTELKKYA VFSKVTIAPDDERVLLGVAGFQARAALANLFSELPSKEKQVVKEGATTLLWFEHPAER FLIVTDEATANMLTDKLRGEAELNNSQQWLALNIEAGFPVIDAANSGQFIPQATNLQA LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGSASRLPEAGEDLELKMGENWRRT GTVLAAVKLEDGQVVVQVVMNNDMEPDSIFRVRDDANTLHIEPLPYSLEE" misc_feature 2975227..2976204 /gene="ygfZ" /locus_tag="SF2884" /note="putative global regulator; Reviewed; Region: PRK09559" /db_xref="CDD:236567" gene complement(2976403..2977062) /locus_tag="SF2885" /db_xref="GeneID:1025840" CDS complement(2976403..2977062) /locus_tag="SF2885" /note="Code: R; COG: COG1272" /codon_start=1 /transl_table=11 /product="hemolysin" /protein_id="NP_708663.1" /db_xref="GeneID:1025840" /translation="MVQKPLIKQGYSLAEEIANSVSHGIGLVFGIVGLVLLLVQAVDL NASATAITSYSLYGGSMILLFLASTLYHAIPHQRAKMWLKKFDHCAIYLLIAGTYTPF LLVGLDSPLARGLMIVIWSLALLGILFKLTIAHRFKILSLVTYLAMGWLSLVVIYEMA VKLAAGSVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYIGQ A" misc_feature complement(2976406..2977062) /locus_tag="SF2885" /note="hemolysin; Provisional; Region: PRK15087" /db_xref="CDD:185044" gene complement(2977226..2977536) /gene="yqfB" /locus_tag="SF2886" /pseudo /db_xref="GeneID:1025879" misc_feature complement(2977226..2977536) /gene="yqfB" /locus_tag="SF2886" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789267 (104 aa). BLAST with identity of 98% in 103 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene 2977581..2979014 /gene="bglA" /locus_tag="SF2887" /db_xref="GeneID:1025852" CDS 2977581..2979014 /gene="bglA" /locus_tag="SF2887" /note="Code: G; COG: COG2723" /codon_start=1 /transl_table=11 /product="6-phospho-beta-glucosidase" /protein_id="NP_708664.2" /db_xref="GeneID:1025852" /translation="MKKLTLPKDFLWGGAVAAHQVEGGWNKGGKGPSICDVLTCGAHG VPREITKEVLPGKYYPNHEAVDFYGHYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEA QPNEEGLKFYDSLFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNRKFVDFFVRFAE VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHDNPEETMYQVLHHQFV ASALAVKAARRINPEMKVGCMLAMVPLYPYSCNPDDVMFAQESMRERYVFTDVQLCGY YPSYVLNEWERRGFNIKMEDGDLDVLREGTCDYLGFSYYMTNAVKAEGGTGDAISGFE GSVPNPYVKASDWGWQIDPVGLRYALCELYERYQRPLFIVENGFGAYDKVEEDGSIND DYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDD GTGDMSRSRKKSFNWYKEVIASNGEKL" misc_feature 2977581..2979011 /gene="bglA" /locus_tag="SF2887" /note="6-phospho-beta-glucosidase BglA; Provisional; Region: PRK15014" /db_xref="CDD:184975" gene complement(2979071..2979814) /gene="ygfF" /locus_tag="SF2888" /db_xref="GeneID:1025832" CDS complement(2979071..2979814) /gene="ygfF" /locus_tag="SF2888" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="NAD(P)-binding oxidoreductase" /protein_id="NP_708665.2" /db_xref="GeneID:1025832" /translation="MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVMN LIMQAGGKAFVLQADISDENQVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAE RINRVLSTNVTGYFLCCREAVKRMALKNGGSGGAIVNVSSVASRLGSPGEYVDYAASK GAIDSLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASGGEPGRVDRVKSNIPMQRGGQA EEVAQAIVWLLSDKASYVTGSFIDLAGGK" misc_feature complement(2979074..2979814) /gene="ygfF" /locus_tag="SF2888" /note="SDR family oxidoreductase; Region: PRK09730" /db_xref="CDD:182051" misc_feature complement(order(2979239..2979244,2979248..2979259, 2979335..2979337,2979347..2979349,2979389..2979397, 2979485..2979487,2979551..2979559,2979635..2979643, 2979713..2979721,2979776..2979787,2979791..2979793)) /gene="ygfF" /locus_tag="SF2888" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:212491" misc_feature complement(order(2979335..2979337,2979347..2979349, 2979389..2979391,2979482..2979484)) /gene="ygfF" /locus_tag="SF2888" /note="active site" /db_xref="CDD:212491" gene complement(2980081..2982954) /gene="gcvP" /locus_tag="SF2889" /db_xref="GeneID:1025878" CDS complement(2980081..2982954) /gene="gcvP" /locus_tag="SF2889" /codon_start=1 /transl_table=11 /product="glycine dehydrogenase" /protein_id="NP_708666.1" /db_xref="GeneID:1025878" /translation="MTQTLSQLENSGAFIERHIGPDAAQQQEMLNAVGAQSLNALTGQ IVPKDIQLATPPQVGAPATEYAALAELKAIASRNKRFTSYIGMGYTAVQLPPVILRNM LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM AKRVSKLKNANRFFVASNVHPQTLDVVRTRAETFGFEVIVDDAQKVLDHQDVFGVLLQ QVGTTGEIHDYTALISELKSRKIVVSVAADIMALVLLTAPGKQGADIVFGSAQRFGVP MGYGGPHAAFFAAKDEYKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC VEVADKAGVLTRAEAAEINLRSDILNAVGITLDETTTRENVMQLFSVLLGDNHGLEID TLDKDVAHDSRSIQPAMLRDDEILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP LGSCTMKLNAAAEMIPITWTEFAELHPFCPPEQAEGYQQMIAQLADWLVKLTGYDAVC MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC DKNGNIDLTDLRAKAEQAGDNLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKKASQVAILNANYIASRLQD AFPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFHAPTMSFPVAGTLM VEPTESESKVELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP YSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISEYQ" misc_feature complement(2980105..2982906) /gene="gcvP" /locus_tag="SF2889" /note="glycine dehydrogenase (decarboxylating); Region: gcvP; TIGR00461" /db_xref="CDD:273089" gene complement(2983073..2983462) /gene="gcvH" /locus_tag="SF2890" /db_xref="GeneID:1025851" CDS complement(2983073..2983462) /gene="gcvH" /locus_tag="SF2890" /note="Code: E; COG: COG0509" /codon_start=1 /transl_table=11 /product="glycine cleavage system protein H" /protein_id="NP_708667.2" /db_xref="GeneID:1025851" /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYAGGWI FKIKASDESELESLLDATAYEALLEDE" misc_feature complement(2983076..2983459) /gene="gcvH" /locus_tag="SF2890" /note="Glycine cleavage system protein H (lipoate-binding) [Amino acid transport and metabolism]; Region: GcvH; COG0509" /db_xref="CDD:440275" gene complement(2983486..2984580) /gene="gcvT" /locus_tag="SF2891" /db_xref="GeneID:1025944" CDS complement(2983486..2984580) /gene="gcvT" /locus_tag="SF2891" /note="Code: E; COG: COG0404" /codon_start=1 /transl_table=11 /product="glycine cleavage system aminomethyltransferase T" /protein_id="NP_708668.1" /db_xref="GeneID:1025944" /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQIDEHHAVRTDA GMFDVSHMTIVDLRGSRTREFLRYLLANDVAKLTKSGKALYSGMLNASGGVIDDLIVY YFTEDFFRLVVNSATREKDLSWITQHAEPFGIEITVRDDLSMIAVQGPNAQAKAATLF NDAQRQAVEGMKPFFGVQVGDLFIATTGYTGEAGYEIALPNEKAADFWRALVEAGVKP CGLGARDTLRLEAGMNLYGQEMDETISPLAANMGWTIAWEPTDRDFIGREALEVQREH GTEKLVGLVMTEKGVLRNELPVRFTDAQGNQHEGIITSGTFSPTLGYSIALARVPEGI GETAIVQIRNREMPVKVTKPVFVRNGKAVA" misc_feature complement(2983495..2984580) /gene="gcvT" /locus_tag="SF2891" /note="glycine cleavage system aminomethyltransferase GcvT; Region: gcvT; PRK00389" /db_xref="CDD:234742" gene complement(2985028..2986230) /gene="visC" /locus_tag="SF2892" /db_xref="GeneID:1025846" CDS complement(2985028..2986230) /gene="visC" /locus_tag="SF2892" /note="Code: HC; COG: COG0654" /codon_start=1 /transl_table=11 /product="2-octaprenylphenol hydroxylase" /protein_id="NP_708669.1" /db_xref="GeneID:1025846" /translation="MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAVDA LPQLRVSAINAASEKLLTRLGVWQDILARRASCYHGMEVWDKDSFGHISFDDQSMGYS HLGHIVENSVIHYALWNKAQQSSDITLLAPTELQQVAWGENETFLTLKDGSMLTARLV IGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEPHDAVARQVFHGEGILAFLPLS DPHLCSIVWSLSPEEAQRMQQASEDEFNRALNIAFDNRLGLCKVESARQVFPLTGRYA RQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELIAELKRLHRQGKDIGQYIYLRR YERSRKHSAALMLAGMQGFRDLFSGANPAKKLLRDIGLKLADTLPGVKPQLIRQAMGL NDLPEWLR" misc_feature complement(2985031..2986230) /gene="visC" /locus_tag="SF2892" /note="oxidoreductase; Provisional; Region: PRK08013" /db_xref="CDD:236139" gene complement(2986253..2987431) /gene="ubiH" /locus_tag="SF2893" /db_xref="GeneID:1025867" CDS complement(2986253..2987431) /gene="ubiH" /locus_tag="SF2893" /note="Code: HC; COG: COG0654" /codon_start=1 /transl_table=11 /product="2-octaprenyl-6-methoxyphenyl hydroxylase" /protein_id="NP_708670.1" /db_xref="GeneID:1025867" /translation="MSVIIVGGGMAGATLALAISRLSHGALPVHLIEATAPESHAHPG FDGRAIALAAGTCQQLARIGVWQSLADCATAITTVHVSDRGHAGFVTLAAEDYQLAAL GQVVELHNVGQRLFALLRKAPGVMLHCPDRVANVARTQSHVEVTLESGEMLTGRVLIA ADGTHSALATACGVDWQQEPYEQLAVIANVATSVAHEGRAFERFTQHGPLAMLPMSDG RCSLVWCHPLERREEVLSWSDEKFCRELQSAFGWRLGQITHAGKRSAYPLALTRAARP ITHRTVLVGNAAQTLHPIAGQGFNLGMRDVMSLAETLTQAHERGEDIGDYGILCRYQQ RRQSDREATIGVTDSLVHLFANRWAPLVVGRNIGLMTMELFTPARDVLAQRTLGWVAR " misc_feature complement(2986256..2987431) /gene="ubiH" /locus_tag="SF2893" /note="2-octaprenyl-6-methoxyphenyl hydroxylase; Validated; Region: PRK05732" /db_xref="CDD:235584" gene complement(2987428..2988753) /gene="pepP" /locus_tag="SF2894" /db_xref="GeneID:1025847" CDS complement(2987428..2988753) /gene="pepP" /locus_tag="SF2894" /note="Code: E; COG: COG0006" /codon_start=1 /transl_table=11 /product="proline aminopeptidase P II" /protein_id="NP_708671.1" /db_xref="GeneID:1025847" /translation="MSEISRQEFQRRRQALVEQMQPGSAALIFAAPEVTRSADSEYPY RQNSDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEK LGVDRALAFSEINQQLYQLLNGLDVVYHAQGEYAYADEIVNSALEKLRKGSRQNLTAP ATMIDWRPVVHEMRLFKSPEEIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHH EFNRHGARYPSYNTIVGSGENGCILHYTENESELRDGDLVLIDAGCEYKGYAGDITRT FPVNGKFTQAQREIYDIVLESLETSLHLYRPGTSILEVTGEVVRIMVSGLVKLGILKG NVDELIAQNAHRPFFMHGLSHWLGLDVHDVGVYGQDRSRILEPGMVLTVEPGLYIAPD ADVPEQYRGIGIRIEDDIVITETGNENLTASVVKKPEEIEALMAAARKQ" misc_feature complement(2987431..2988744) /gene="pepP" /locus_tag="SF2894" /note="proline aminopeptidase P II; Provisional; Region: PRK10879" /db_xref="CDD:182804" gene complement(2988779..2989357) /gene="ygfB" /locus_tag="SF2895" /db_xref="GeneID:1025842" CDS complement(2988779..2989357) /gene="ygfB" /locus_tag="SF2895" /note="Code: S; COG: COG3079" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708672.2" /db_xref="GeneID:1025842" /translation="MSIQNEMPGYNEMNQYLNQQGTGLTPAEMHGLISGMICGGNDDS SWLPLLHDLTNEGMAFGHELAQALRKMHSATSDALQDDGFLFQLYLPDGDDVSVFDRA DALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDEDEDQEELEMSLEE IIEYVRVAALLCHDTFTHPQPTAPEVQKPTLH" misc_feature complement(2988782..2989354) /gene="ygfB" /locus_tag="SF2895" /note="hypothetical protein; Reviewed; Region: PRK01736" /db_xref="CDD:234976" gene 2989525..2989854 /gene="ygfE" /locus_tag="SF2896" /db_xref="GeneID:1025844" CDS 2989525..2989854 /gene="ygfE" /locus_tag="SF2896" /note="Code: S; COG: COG3027" /codon_start=1 /transl_table=11 /product="Z-ring-associated protein" /protein_id="NP_708673.1" /db_xref="GeneID:1025844" /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKER TRVTNTEQLVFIAALNISYELAQEKAKTRDYAASMEQRIRMLQQTIEQALLEQGRITE KTNQNFE" misc_feature 2989525..2989851 /gene="ygfE" /locus_tag="SF2896" /note="cell division protein ZapA; Region: PRK10972" /db_xref="CDD:182874" gene 2989896..2990079 /gene="ssrS" /locus_tag="SF4560" /db_xref="GeneID:1025835" ncRNA 2989896..2990079 /ncRNA_class="other" /gene="ssrS" /locus_tag="SF4560" /product="6S RNA" /db_xref="GeneID:1025835" gene 2990154..2990702 /gene="ygfA" /locus_tag="SF2897" /db_xref="GeneID:1025876" CDS 2990154..2990702 /gene="ygfA" /locus_tag="SF2897" /note="Code: H; COG: COG0212" /codon_start=1 /transl_table=11 /product="5-formyltetrahydrofolate cyclo-ligase" /protein_id="NP_708674.2" /db_xref="GeneID:1025876" /translation="MIRQRRRALTPEQQLEMGQQAATRMMTYPPVVMAHTVAVFLSFD GELDTQPLIEQLWRAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR DVLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKTQPVGYAHDCQLVEK LPVEEWDIPLPAVVTPSKVWEW" misc_feature 2990154..2990699 /gene="ygfA" /locus_tag="SF2897" /note="5-formyltetrahydrofolate cyclo-ligase family protein; Provisional; Region: PRK10333" /db_xref="CDD:182385" gene complement(2991483..2992715) /gene="serA" /locus_tag="SF2898" /db_xref="GeneID:1025927" CDS complement(2991483..2992715) /gene="serA" /locus_tag="SF2898" /note="Code: E; COG: COG0111" /codon_start=1 /transl_table=11 /product="D-3-phosphoglycerate dehydrogenase" /protein_id="NP_708675.1" /db_xref="GeneID:1025927" /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDD EQLKESIRDAHFIGLRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVF NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG HIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTK NMMGAKEISLMKPGSLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDP FTSPLCEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL HGGRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEK ALQAMKAIPGTIRARLLY" misc_feature complement(2991486..2992715) /gene="serA" /locus_tag="SF2898" /note="phosphoglycerate dehydrogenase; Region: PRK11790" /db_xref="CDD:236985" misc_feature complement(order(2992392..2992394,2992461..2992469, 2992533..2992538)) /gene="serA" /locus_tag="SF2898" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:240653" misc_feature complement(order(2991831..2991836,2991840..2991842, 2991924..2991926,2991996..2992004,2992056..2992058, 2992065..2992070,2992080..2992088,2992161..2992163, 2992170..2992178,2992230..2992244,2992380..2992382, 2992392..2992394,2992398..2992400,2992464..2992466)) /gene="serA" /locus_tag="SF2898" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:240653" misc_feature complement(order(2991813..2991815,2991819..2991830, 2991834..2991857,2991864..2991866,2991870..2991875, 2991885..2991890,2991897..2991899,2991906..2991911, 2991918..2991920,2992197..2992202,2992260..2992262, 2992266..2992301,2992305..2992307,2992311..2992316, 2992323..2992328,2992335..2992337,2992341..2992343, 2992350..2992355,2992359..2992367,2992371..2992376, 2992383..2992388)) /gene="serA" /locus_tag="SF2898" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:240653" gene complement(2992971..2993630) /gene="rpiA" /locus_tag="SF2899" /db_xref="GeneID:1025914" CDS complement(2992971..2993630) /gene="rpiA" /locus_tag="SF2899" /note="Code: G; COG: COG0120" /codon_start=1 /transl_table=11 /product="ribose-5-phosphate isomerase A" /protein_id="NP_708676.2" /db_xref="GeneID:1025914" /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG QIEGAVSSSDASTEKLKSLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQGV VTDNGNVILDVHGMEILDPIAMENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV K" misc_feature complement(2992980..2993630) /gene="rpiA" /locus_tag="SF2899" /note="ribose-5-phosphate isomerase RpiA; Region: PRK00702" /db_xref="CDD:234816" misc_feature complement(order(2993130..2993132,2993142..2993144, 2993148..2993150,2993157..2993162,2993340..2993345, 2993424..2993426,2993430..2993432,2993457..2993462, 2993469..2993471,2993547..2993549)) /gene="rpiA" /locus_tag="SF2899" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:238692" misc_feature complement(order(2993268..2993270,2993322..2993324, 2993340..2993351,2993379..2993381,2993385..2993390, 2993538..2993543,2993547..2993549)) /gene="rpiA" /locus_tag="SF2899" /note="active site" /db_xref="CDD:238692" misc_feature complement(order(2993052..2993054,2993067..2993072, 2993196..2993198,2993205..2993213,2993217..2993222, 2993304..2993306,2993325..2993327,2993409..2993411, 2993421..2993423)) /gene="rpiA" /locus_tag="SF2899" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238692" gene complement(2993686..2993870) /gene="yqfE" /locus_tag="SF2900" /pseudo /db_xref="GeneID:1026821" misc_feature complement(2993686..2993870) /gene="yqfE" /locus_tag="SF2900" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789281 (77 aa). BLAST with identity of 97% in 61 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct." /pseudo gene 2994013..2994906 /gene="iciA" /locus_tag="SF2901" /db_xref="GeneID:1025934" CDS 2994013..2994906 /gene="iciA" /locus_tag="SF2901" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="chromosome replication initiation inhibitor protein" /protein_id="NP_708677.2" /db_xref="GeneID:1025934" /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG ALDYLFVSSKPFAEKYFPNGVTRSALLKAPVVAFDHLDDMHQAFLQQNFDLPPGSVPC HIVNSSEAFVQLARQGTTCCMIPHLQIEKELASGELIDLTPGLFQRRMLYWHRFAPES RMMRKVTDALLDYGHKVLRQD" misc_feature 2994019..2994897 /gene="iciA" /locus_tag="SF2901" /note="ArgP/LysG family DNA-binding transcriptional regulator; Region: PRK03635" /db_xref="CDD:235144" gene 2995110..2997254 /gene="sbm" /locus_tag="SF2902" /db_xref="GeneID:1025843" CDS 2995110..2997254 /gene="sbm" /locus_tag="SF2902" /note="Code: I; COG: COG1884" /codon_start=1 /transl_table=11 /product="methylmalonyl-CoA mutase" /protein_id="NP_708678.2" /db_xref="GeneID:1025843" /translation="MSNEQEWQQLANKELSRREKTVDSLVQQTAEGIAIKPLYTEADL DNLEVTGTLPGLPPYVRGPRATMYTAQPWTIRQYAGFSTAKESNAFYRRNLAAGQKGL SVAFDLATHRGYDSDNPRVAGDVGKAGVAIDTVEDMKVLFDQIPLDKMSVSMTMNGAV LPVLAFYIVAAEEQGVTPDKLTGTIQNDILKEYLCRNTYIYPPKPSMRIIADIIAWCS GNMPRFNTISISGYHMGEAGANCVQQVAFTLADGIEYIKAAISAGLKIDDFAPRLSLF FGIGMDLFMNVAMLRAARYLWSEAVSGFGAQDPKSLALRTHCQTSGWSLTEQDPYNNV IRTTIEALAATLGGTQSLHTNAFDEALGLPTDFSARIARNTQIIIQEESELCHTVDPL AGSYYIESLTDQIVKQARAIIQQIDEAGGMAKAIEAGLPKRMIEEASAREQSLIDQGK RVIVGVNKYKLDHEDETDVLEIDNVMVRNEQIASLERIRATRDDAAVTAALNALTHAA QHNENLLAAAVNAARVRATLGEISDALEVAFDRYLVPSQCVTGVIAQSYHQSEKSASE FDAIVAQTEQFLADNGRRPRILIAKMGQDGHDRGAKVIASAYSDLGFDVDLSPMFSTP EEIARLAVENDVHVVGASSLAAGHKTLIPELVEALKKWGREDICVVAGGVIPPQDYAF LQERGVAAIYGPGTPMLDSVRDVLNLISQHHD" misc_feature 2995110..2997251 /gene="sbm" /locus_tag="SF2902" /note="methylmalonyl-CoA mutase; Reviewed; Region: PRK09426" /db_xref="CDD:236508" gene 2997247..2998242 /gene="ygfD" /locus_tag="SF2903" /db_xref="GeneID:1025928" CDS 2997247..2998242 /gene="ygfD" /locus_tag="SF2903" /note="Code: E; COG: COG1703" /codon_start=1 /transl_table=11 /product="membrane ATPase/protein kinase" /protein_id="NP_708679.1" /db_xref="GeneID:1025928" /translation="MINEATLAESIRRLRQGERATLAQAMTLVESRHPRHQALSTQLL DAIMPFCGNALRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSIL GEKTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGIAQS ETEVARMVDCFISLQIAGGGDDLQGIKKGLMEVADLLVINKDDGDNHTNVAIARHMYE SALHILRRKYDEWQPRGLTCSALEKRGIDEIWHAIIDFKTALTASGRLQQVRQQQSVE WLRKQTEEEVLNHLFANEDFDRYYRQTLLAVKNNTLSPRTGLRQLSEFIQTQYFD" misc_feature 2997247..2998236 /gene="ygfD" /locus_tag="SF2903" /note="methylmalonyl Co-A mutase-associated GTPase MeaB; Region: PRK09435" /db_xref="CDD:236515" misc_feature order(2997367..2997369,2997376..2997381,2997655..2997657, 2997793..2997798,2997805..2997822,2997892..2997897, 2997904..2997912,2997943..2997945) /gene="ygfD" /locus_tag="SF2903" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349768" misc_feature order(2997430..2997453,2997844..2997849,2997853..2997855, 2997961..2997969) /gene="ygfD" /locus_tag="SF2903" /note="active site" /db_xref="CDD:349768" gene 2998211..2999038 /gene="ygfG" /locus_tag="SF2904" /db_xref="GeneID:1025930" CDS 2998211..2999038 /gene="ygfG" /locus_tag="SF2904" /note="Code: I; COG: COG1024" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708680.4" /db_xref="GeneID:1025930" /translation="MNLSRRNILIKGIFMSYQYVNVATINKVAVIEFNYGRKLNALSK VFIDDLMQALSDLNRPEIRCIILRAPSGSKVFSAGHDIHELPSGGRDPLSYDDPLRQI TRMIQKFPKPIISMVEGSVWGGAFEMIMSSDLIIAASTSTFSMTPVNLGVPYNLVGIH NLTRDAGFHIVKELIFTASPITAQRALAVGILNHVVEVEELEDFTLQMAHHISEKAPL AIAVIKEELRVLGEAHTMNSDEFERIQGMRRAVYDSEDYQEGMNAFLEKRKPNFVGH" misc_feature 2998253..2999035 /gene="ygfG" /locus_tag="SF2904" /note="methylmalonyl-CoA decarboxylase; Provisional; Region: PRK11423" /db_xref="CDD:236908" misc_feature order(2998325..2998327,2998331..2998333,2998430..2998432, 2998442..2998456,2998568..2998570,2998574..2998582, 2998646..2998651,2998658..2998660) /gene="ygfG" /locus_tag="SF2904" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature order(2998448..2998450,2998580..2998582) /gene="ygfG" /locus_tag="SF2904" /note="oxyanion hole (OAH) forming residues [active]" /db_xref="CDD:119339" misc_feature order(2998520..2998522,2998544..2998546,2998607..2998618, 2998652..2998663,2998679..2998681,2998685..2998693, 2998697..2998702,2998715..2998720,2998724..2998729, 2998733..2998738,2998745..2998747,2998778..2998780, 2998787..2998789,2998832..2998834,2998841..2998846) /gene="ygfG" /locus_tag="SF2904" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" gene 2999062..3000540 /gene="ygfH" /locus_tag="SF2905" /pseudo /db_xref="GeneID:1025915" misc_feature 2999062..3000540 /gene="ygfH" /locus_tag="SF2905" /note="Similar to Escherichia coli K12 coenzyme A transferase gi: 1789287 (493 aa). BLAST with identity of 98% in 493 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(3000482..3001432) /gene="ygfI" /locus_tag="SF2906" /db_xref="GeneID:1025932" CDS complement(3000482..3001432) /gene="ygfI" /locus_tag="SF2906" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_708681.2" /db_xref="GeneID:1025932" /translation="MDIFISKKMRNFILLAQTNNIARAAEKIHMTASPFGKSIAALEE QIGYTLFTRKDNNISLNKAGQELYQKLFPVYQRLSAIDNEIHNSGRRSREIVIGIDNT YPTIIFDQLISLGDKYEGVTAQPVEFSENGVIDNLFDRQLDFIISPQHVSARVQELEN LTISELPPLRLGFLVSRRYEERQEQELLQELPWLQMRFQNRANFEAMIDANMRPCGIN PTIIYRPYSFMAKISAVERGHFLTVIPHFAWRLVNPATLKYFDAPHRPMYMQEYLYSI RNHRYTATIFSILLKIVTGQTINPASSRLQLNYGVSRRRG" misc_feature complement(3000578..3001432) /gene="ygfI" /locus_tag="SF2906" /note="DNA-binding transcriptional regulator, LysR family [Transcription]; Region: LysR; COG0583" /db_xref="CDD:440348" gene complement(3001599..3002339) /gene="yggE" /locus_tag="SF2907" /db_xref="GeneID:1025894" CDS complement(3001599..3002339) /gene="yggE" /locus_tag="SF2907" /note="Code: S; COG: COG2968" /codon_start=1 /transl_table=11 /product="oxidative stress defense protein" /protein_id="NP_708682.1" /db_xref="GeneID:1025894" /translation="MKFKVIALAALMGISGMAAQANELPDGPHIVTSGTASVDAVPDI ATLAIEVNVAAKDAATAKKQADERVAQYISFLELNQIAKKDISSANLRTQPDYDYQDG KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA AIDNAIHQAQELANGFHRKLGPVYSVRYHVSNYQPSPMVRMMKADAAPVSAQETYEQA AIQFDDQVDVVFQLEPVDQQPAKTPAAQ" misc_feature complement(3001638..3002318) /gene="yggE" /locus_tag="SF2907" /note="oxidative stress defense protein; Provisional; Region: PRK11087" /db_xref="CDD:236840" gene complement(3002432..3003067) /gene="yggA" /locus_tag="SF2908" /db_xref="GeneID:1025919" CDS complement(3002432..3003067) /gene="yggA" /locus_tag="SF2908" /note="Code: R; COG: COG1279" /codon_start=1 /transl_table=11 /product="arginine exporter protein" /protein_id="NP_708683.2" /db_xref="GeneID:1025919" /translation="MFSYYFQGLALGAAMILPLGPQNAFVMNQGIRRQYHIMIALLCA ISDLVLICAGIFGGSALLMQSPWLLALVTWGGVVFLLWYGFGAFKTAMSSNIELASAE VLKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLDVEPKRWFALGTISASFLWF FGLAILAAWLAPRLRTAKSQRIINLVVGCVMWFIALQLARDGIAHAQALFS" misc_feature complement(3002447..3003067) /gene="yggA" /locus_tag="SF2908" /note="arginine exporter ArgO; Region: PRK09304" /db_xref="CDD:236463" gene complement(3003206..3004066) /gene="yggB" /locus_tag="SF2909" /db_xref="GeneID:1025924" CDS complement(3003206..3004066) /gene="yggB" /locus_tag="SF2909" /note="Code: M; COG: COG0668" /codon_start=1 /transl_table=11 /product="mechanosensitive ion channel MscS" /protein_id="NP_708684.1" /db_xref="GeneID:1025924" /translation="MEDLNVVDSINGAGSWLVANQALLLSYAVNIVAALAIIIVGLII ARMISNAVNRLMISRKIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLSVQIFSTTMRTADG KIIVIPNGKIIAGNIINFSREPVRRNEFIIGVAYDSDIDQVKQILTNIIQSEDRILKD REMTVRLNELGASSINFVVRVWSNSGDLQNVYWDVLERIKREFDAAGISFPYPQMDVN FKRVKEDKAA" misc_feature complement(3003209..3004066) /gene="yggB" /locus_tag="SF2909" /note="small-conductance mechanosensitive channel MscS; Region: PRK10334" /db_xref="CDD:182386" gene complement(3004257..3005336) /gene="fba" /locus_tag="SF2910" /db_xref="GeneID:1025905" CDS complement(3004257..3005336) /gene="fba" /locus_tag="SF2910" /note="Code: G; COG: COG0191" /codon_start=1 /transl_table=11 /product="fructose-bisphosphate aldolase" /protein_id="NP_708685.2" /db_xref="GeneID:1025905" /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN AVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYG VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSK YLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT IAASFGNVHGVYKPGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIK DSVSYGVVKMNIDTDTQWATWEGVLNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVW LRAGQTSMIARLEKAFQELNAIDVL" misc_feature complement(3004260..3005309) /gene="fba" /locus_tag="SF2910" /note="fructose-bisphosphate aldolase; Provisional; Region: PRK09197" /db_xref="CDD:236406" misc_feature complement(order(3004467..3004472,3004476..3004478, 3004533..3004535,3004539..3004544,3004647..3004649, 3004653..3004661,3004788..3004799,3004806..3004808, 3004812..3004814,3004902..3004904,3005004..3005009, 3005229..3005231)) /gene="fba" /locus_tag="SF2910" /note="active site" /db_xref="CDD:238476" misc_feature complement(order(3004425..3004427,3004434..3004436, 3004446..3004448,3004455..3004460,3004464..3004469, 3004788..3004790,3005046..3005051,3005058..3005060, 3005070..3005072,3005127..3005135,3005142..3005144, 3005205..3005207,3005214..3005222)) /gene="fba" /locus_tag="SF2910" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238476" misc_feature complement(order(3004542..3004544,3004656..3004658, 3004791..3004793,3004812..3004814,3004902..3004904, 3005004..3005006)) /gene="fba" /locus_tag="SF2910" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:238476" misc_feature complement(order(3004533..3004535,3004539..3004541, 3004647..3004649,3004653..3004655,3004659..3004661)) /gene="fba" /locus_tag="SF2910" /note="Na+ binding site [ion binding]; other site" /db_xref="CDD:238476" gene complement(3005551..3006714) /gene="pgk" /locus_tag="SF2911" /db_xref="GeneID:1025922" CDS complement(3005551..3006714) /gene="pgk" /locus_tag="SF2911" /note="Code: G; COG: COG0126" /codon_start=1 /transl_table=11 /product="phosphoglycerate kinase" /protein_id="NP_708686.2" /db_xref="GeneID:1025922" /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKDGKVTSDARIRASLPTI ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA EGELVVLENVRFNKGEKKDDETLSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA NTFIAAQGHDVGKSLYEADLVDEAKRLLTTCNIPVPSDVRVATEFSETAPATLKSVND VKADEQILDIGDASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK" misc_feature complement(3005566..3006708) /gene="pgk" /locus_tag="SF2911" /note="phosphoglycerate kinase; Provisional; Region: pgk; PRK00073" /db_xref="CDD:234613" misc_feature complement(order(3006376..3006378,3006538..3006540, 3006607..3006609,3006646..3006648,3006652..3006654)) /gene="pgk" /locus_tag="SF2911" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238195" misc_feature complement(order(3005632..3005640,3006172..3006183)) /gene="pgk" /locus_tag="SF2911" /note="hinge regions; other site" /db_xref="CDD:238195" misc_feature complement(order(3005686..3005694,3005773..3005784, 3005788..3005790,3005794..3005796,3005866..3005868, 3006067..3006069)) /gene="pgk" /locus_tag="SF2911" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:238195" misc_feature complement(3005689..3005691) /gene="pgk" /locus_tag="SF2911" /note="catalytic site [active]" /db_xref="CDD:238195" gene complement(3006764..3007783) /gene="epd" /locus_tag="SF2912" /db_xref="GeneID:1025918" CDS complement(3006764..3007783) /gene="epd" /locus_tag="SF2912" /note="Code: G; COG: COG0057" /codon_start=1 /transl_table=11 /product="erythrose 4-phosphate dehydrogenase" /protein_id="NP_708687.2" /db_xref="GeneID:1025918" /translation="MTVRVAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM AHLLKYDTSHGRFAWEVRQERDQLFVGDDAIRVLHERSLQSLPWRELGVDVVLDCTGV YGSREHGEAHIAAGAKKVLFSHPGSNDLDATVVYGVNQDQLRAEHRIVSNASCTTNCI IPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAG ITRFFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNLLLQKAAQGAFHGIV DYTELPLVSVDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA TVAFR" misc_feature complement(3006782..3007780) /gene="epd" /locus_tag="SF2912" /note="erythrose 4-phosphate dehydrogenase; Provisional; Region: PRK13535" /db_xref="CDD:184122" gene 3008317..3008586 /locus_tag="SF2913" /db_xref="GeneID:1025925" CDS 3008317..3008586 /locus_tag="SF2913" /note="Code: R; COG: COG1661" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="NP_708688.1" /db_xref="GeneID:1025925" /translation="MRYAGQEGTTLLNGTFEVISLNGTLEQSGEHLHLCVSDPHGTML GGHMMPGCTVRTTLELVIGSLEELAFSRQPCALSGYDELHISPVK" misc_feature <3008317..3008565 /locus_tag="SF2913" /note="Domain of unknown function found in archaea, bacteria, and plants; Region: DUF296; cl00720" /db_xref="CDD:469889" gene 3008609..3009187 /locus_tag="SF2914" /db_xref="GeneID:1025218" CDS 3008609..3009187 /locus_tag="SF2914" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708689.1" /db_xref="GeneID:1025218" /translation="MARSHFSSQALVLIVISIAINMIGGQLASMVKLPIFLDSIGTLI SAVLLGPVIGMLTGLLTNLLWGLLTDPIAAAFAPVAMVIGLVSGWLARAGWFRTLPKV VVSGVIITLAVTVVAVPLRTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANL VDKILTAVIVWLLLRQLPIRTTRHFPAMAAVR" gene 3009188..3009895 /locus_tag="SF2915" /pseudo /db_xref="GeneID:1025935" misc_feature 3009188..3009895 /locus_tag="SF2915" /note="Similar to Escherichia coli O157:H7 EDL933 conserved hypothetical protein ref: NP_289497.1 (235 aa). BLAST with identity of 97% in 236 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 3009883..3010560 /locus_tag="SF2916" /db_xref="GeneID:1026013" CDS 3009883..3010560 /locus_tag="SF2916" /note="Code: P; COG: COG1122" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_708690.2" /db_xref="GeneID:1026013" /translation="MVTLEQFRYCPTHSTHPPFCYDFHYVKPGMVAIFGDNGSGKSTL AQLMAGWYPDFLPREITGTGTLLGTPIGHLPLNEQSATIQLVQQSPYLQLSGCTFSVE EEVAFGPENLCLAEAEIMARIDAALTLTECQPLRHRHPATLSGGETQRVIIACAIAMQ PKLLILDEAFSRLTPQASEMLLQRLQHWAFERGSLIILFERHRTPFLNYCQQAWQLQN GALQPLC" misc_feature 3009958..3010539 /locus_tag="SF2916" /note="First domain of the ATP-binding cassette component of cobalt transport system; Region: ABC_cobalt_CbiO_domain1; cd03225" /db_xref="CDD:213192" misc_feature 3009985..3010008 /locus_tag="SF2916" /note="Walker A/P-loop; other site" /db_xref="CDD:213192" misc_feature order(3009994..3009999,3010003..3010011,3010144..3010146, 3010381..3010386,3010486..3010488) /locus_tag="SF2916" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213192" misc_feature 3010135..3010146 /locus_tag="SF2916" /note="Q-loop/lid; other site" /db_xref="CDD:213192" misc_feature 3010309..3010338 /locus_tag="SF2916" /note="ABC transporter signature motif; other site" /db_xref="CDD:213192" misc_feature 3010369..3010386 /locus_tag="SF2916" /note="Walker B; other site" /db_xref="CDD:213192" misc_feature 3010393..3010404 /locus_tag="SF2916" /note="D-loop; other site" /db_xref="CDD:213192" misc_feature order(3010471..3010482,3010486..3010494) /locus_tag="SF2916" /note="H-loop/switch region; other site" /db_xref="CDD:213192" gene 3010554..3011231 /locus_tag="SF2917" /db_xref="GeneID:1025910" CDS 3010554..3011231 /locus_tag="SF2917" /note="Code: P; COG: COG1122" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_708691.2" /db_xref="GeneID:1025910" /translation="MLTLNKISYRWPGAATDCLCDISLQLKQGEWLALTGDNGAGKST LLRVMAGLLTPTAGTVMLQQQAMKNLKNRQRAAKVGVLFQEAENQLFHSTVADEIAFG LKLQKCPADEITQRTHAALQCCQLADTANSHPLDLHNAQRRMVAVACLEALSPPLLLL DEPSRDFDENWLSVFESWLEKCRQRGTSVVAISHDAAFTRRHFSRVVRLEDGVIRNVN PPDDIHP" misc_feature 3010563..3011189 /locus_tag="SF2917" /note="First domain of the ATP-binding cassette component of cobalt transport system; Region: ABC_cobalt_CbiO_domain1; cd03225" /db_xref="CDD:213192" misc_feature 3010659..3010682 /locus_tag="SF2917" /note="Walker A/P-loop; other site" /db_xref="CDD:213192" misc_feature order(3010668..3010673,3010677..3010685,3010803..3010805, 3011034..3011039,3011133..3011135) /locus_tag="SF2917" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213192" misc_feature 3010794..3010805 /locus_tag="SF2917" /note="Q-loop/lid; other site" /db_xref="CDD:213192" misc_feature 3010962..3010991 /locus_tag="SF2917" /note="ABC transporter signature motif; other site" /db_xref="CDD:213192" misc_feature 3011022..3011039 /locus_tag="SF2917" /note="Walker B; other site" /db_xref="CDD:213192" misc_feature 3011046..3011057 /locus_tag="SF2917" /note="D-loop; other site" /db_xref="CDD:213192" misc_feature 3011121..3011141 /locus_tag="SF2917" /note="H-loop/switch region; other site" /db_xref="CDD:213192" gene complement(3011203..3011916) /gene="frcK" /locus_tag="SF2918" /db_xref="GeneID:1026822" CDS complement(3011203..3011916) /gene="frcK" /locus_tag="SF2918" /note="Code: H; COG: COG1072" /codon_start=1 /transl_table=11 /product="nucleoside triphosphate hydrolase domain-containing protein" /protein_id="NP_708692.1" /db_xref="GeneID:1026822" /translation="MKIELTVNGLNVQAQYHDEEIERVHKLLLRMLAALQTVNPQRRT VVFLCAPPGTGKSTLTTFWEYLAQQDPELPAIQALPMDGFHHYNSWLDAHQLRPFKGA PETFDVAKLAENLRQVVEGDCTWPQYDRQKHDPVEDALHVTAPLVIVEGNWLLLDDEK WCQLAQFCDFSIFINAPAAALRERLVGRKLAGGVSLADAEAFYDRTDGPNVRRGLEES LPANLTLMMTATGEYRLVD" misc_feature complement(3011212..3011889) /gene="frcK" /locus_tag="SF2918" /note="nucleoside triphosphate hydrolase domain-containing protein; Reviewed; Region: PRK09270" /db_xref="CDD:236442" misc_feature complement(3011743..3011754) /gene="frcK" /locus_tag="SF2918" /note="active site" /db_xref="CDD:238977" gene complement(3011913..3012422) /gene="yggD" /locus_tag="SF2919" /db_xref="GeneID:1026023" CDS complement(3011913..3012422) /gene="yggD" /locus_tag="SF2919" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator" /protein_id="NP_708693.1" /db_xref="GeneID:1026023" /translation="MATLTEDDVLEQLDAQDNLFSFMKTAHSILLQGIRQFLPSLFVD NDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMDKWLYADITHFSQYWHYLNEQD ETPGFADDITWDFISNVNSITRNATLYDALKAMKFADFAVWSEARFSGMVKTALTLAV TTTLKELTP" misc_feature complement(3011916..3012416) /gene="yggD" /locus_tag="SF2919" /note="putative DNA-binding transcriptional regulator; Provisional; Region: PRK10022" /db_xref="CDD:182199" gene complement(3012444..3013409) /gene="yggF" /locus_tag="SF2920" /pseudogene="unknown" /db_xref="GeneID:1025929" gene complement(3013406..3014647) /locus_tag="SF2921" /db_xref="GeneID:1025917" CDS complement(3013406..3014647) /locus_tag="SF2921" /note="Code: ER; COG: COG1063" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_708695.3" /db_xref="GeneID:1025917" /translation="MESLPEFELPEITDNELLVSVISDSVCLSTWKAALLGSEHKRVP DDLENHPVITGHECAGVIVEVGKNLTGKYKKGQRFVLQPAMGLPSGYSAGYSYEYFGG NATYMIIPEIAINLGCVLPYHGSYFAAASLAEPMCCIIGAYHANYHTTQYVYEHRMGV KPGGNIALLACAGPMGIGAIDYAINGGIQPSRVVVVDIDDKRLAQVQKLLPVDLAASK GIELVYVNTKGMSDPIQMLRALTGDVGFDDIFVYAAVPAVVEMADELLAEDGCLNFFA GLTDKNFKVPFNFYNVHYNSTHVVGTSGGSTDDMKEAIALSATGQLQPSFMVTHIGGL DAVPETVLNLPDIPGGKKLIYNGVTMPLTAIADFAEKGKTDPLFKELARLVEETHGIW NEQAEKYLLAQFGVDIGEAAQ" misc_feature complement(3013439..3014644) /locus_tag="SF2921" /note="L-sorbose-1-phosphate reductase; Region: sorbose_phosphate_red; cd08238" /db_xref="CDD:176200" misc_feature complement(order(3013736..3013744,3013820..3013825, 3013883..3013885,3013889..3013894,3013967..3013969, 3014042..3014044,3014054..3014059,3014120..3014137, 3014234..3014236,3014246..3014248,3014552..3014554, 3014561..3014569)) /locus_tag="SF2921" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176200" misc_feature complement(order(3014246..3014248,3014480..3014482, 3014561..3014563,3014567..3014569)) /locus_tag="SF2921" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176200" mobile_element complement(3014634..3015401) /mobile_element_type="insertion sequence:IS1" gene complement(3014649..3015044) /gene="insB" /locus_tag="SF2922" /db_xref="GeneID:1025898" CDS complement(3014649..3015044) /gene="insB" /locus_tag="SF2922" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708696.1" /db_xref="GeneID:1025898" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3014652..3015041) /gene="insB" /locus_tag="SF2922" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3015071..3015346) /gene="insA" /locus_tag="SF2923" /db_xref="GeneID:1026007" CDS complement(3015071..3015346) /gene="insA" /locus_tag="SF2923" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708697.1" /db_xref="GeneID:1026007" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3015074..3015325) /gene="insA" /locus_tag="SF2923" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3015837..3016745 /locus_tag="SF2924" /db_xref="GeneID:1025907" CDS 3015837..3016745 /locus_tag="SF2924" /codon_start=1 /transl_table=11 /product="serine protease" /protein_id="NP_708698.1" /db_xref="GeneID:1025907" /translation="MKAPVSLTSFRPQKSLAIAIGVLAVVVLPFLSYYTVNEGERGIL LRYGKIVKVAEPGLGFKIPFMESVEKISTRNQAVVYQGLQAYSRDQQPAQMTVSVSFH IKPSEAGAVYTTYNTIEALKDRLIVRQLPTQLENIFGQYTAISAVQDRTKLVQDLQNA MRKAVVGPVVIDGVQIENIDFSDAYEKSIENRMKAEVAIATRKQNLETEKIQAQIAVT QAQAEADSKLAAAKAEAETIRVRGAAEAETIRLKSAAEAEAIRLRGEALRDNPGLVAL TTAERWDGKLPDTMIPGSTVPFISTK" misc_feature 3015933..3016514 /locus_tag="SF2924" /note="Prohibitin family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily; Region: SPFH_prohibitin; cd03401" /db_xref="CDD:259799" gene complement(3016791..3018782) /gene="tktA" /locus_tag="SF2925" /db_xref="GeneID:1025939" CDS complement(3016791..3018782) /gene="tktA" /locus_tag="SF2925" /note="Code: G; COG: COG0021" /codon_start=1 /transl_table=11 /product="transketolase" /protein_id="NP_708699.2" /db_xref="GeneID:1025939" /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF LKHNPQNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMEELKNFRQLHSKTPGHPE VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMME GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAMRFEAYGWHVIRDIDG HDAASIKRAVEEARAVTDKPSLLMCKTIIGFGSPNKAGTHDSHGAPLGDAEIALTREQ LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYAKAYPQEAAEFTRRMKGEMP SDFDAKAKEFIAKLQANPAKIASRKASQNAIEAFGPLLPEFLGGSADLAPSNLTLWSG SKAINEDAAGNYIHYGVREFGMTAIANGISLHGGFLPYTSTFLMFVEYARNAVRMAAL MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPELIFIATGSEVELAVA AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVTARVAVEAGIADYWYKYVG LNGAIVGMTTFGESAPAELLFEEFGFTVDNVVAKAKALL" misc_feature complement(3016794..3018782) /gene="tktA" /locus_tag="SF2925" /note="Transketolase [Carbohydrate transport and metabolism]; Region: TktA; COG0021" /db_xref="CDD:439792" gene 3018934..3019818 /gene="yggG" /locus_tag="SF2926" /db_xref="GeneID:1025881" CDS 3018934..3019818 /gene="yggG" /locus_tag="SF2926" /note="Code: O; COG: COG0501" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708700.2" /db_xref="GeneID:1025881" /translation="MLACCAICSPVRCAFPYTETERRFTCKRRIFRIILTLCGRENMK IRALLVAMSVATVLTGCQNMDSNGLLSSGAEAFQAYSLSDAQVKTLSDQACQEMDSKA TIAPANSEYAKRLTTIANALGNNINGQPVNYKVYMAKDVNAFAMANGCIRVYSGLMDM MTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASAGGIVGSLSQSQLGDLG EKLVNSQFSQRQEAEADDYSYDLLHQRGISPAGLATSFEKLAKLEEGRQSSMFDDHPA SAERAQHIRDRISADGIK" misc_feature 3019147..3019794 /gene="yggG" /locus_tag="SF2926" /note="Peptidase M48C Ste24p loiP-like, integral membrane protein; Region: M48C_loiP_like; cd07334" /db_xref="CDD:320693" misc_feature order(3019447..3019452,3019459..3019461,3019624..3019626, 3019636..3019638,3019753..3019755) /gene="yggG" /locus_tag="SF2926" /note="putative active site [active]" /db_xref="CDD:320693" misc_feature order(3019447..3019449,3019459..3019461,3019624..3019626, 3019753..3019755) /gene="yggG" /locus_tag="SF2926" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:320693" gene complement(3020024..3020944) /gene="speB" /locus_tag="SF2927" /db_xref="GeneID:1025911" CDS complement(3020024..3020944) /gene="speB" /locus_tag="SF2927" /note="Code: E; COG: COG0010" /codon_start=1 /transl_table=11 /product="agmatinase" /protein_id="NP_708701.1" /db_xref="GeneID:1025911" /translation="MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM ATSGRAGGRHGPAAIRQVSTNLAWEHNRFPWNFDMRERLNVVDCGDLVYAFGDAREMS EKLQAHAEKLLAAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE FDHGTMFYTAPKEGLIDPNHSVQIGIRTEFDKDNGFTVLDACQVNDRSVDDVIAQVKQ IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA PAYDQSEITALAAATLALEMLYIQAAKKGE" misc_feature complement(3020027..3020926) /gene="speB" /locus_tag="SF2927" /note="agmatinase; Provisional; Region: PRK02190" /db_xref="CDD:235011" misc_feature complement(order(3020123..3020125,3020249..3020251, 3020255..3020257,3020453..3020458,3020486..3020494, 3020498..3020500,3020567..3020569)) /gene="speB" /locus_tag="SF2927" /note="putative active site [active]" /db_xref="CDD:212538" gene complement(3021080..3021454) /locus_tag="SF2928" /db_xref="GeneID:1026022" CDS complement(3021080..3021454) /locus_tag="SF2928" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708702.2" /db_xref="GeneID:1026022" /translation="MNYQLYVRNYSRNTNYEIVATADGLDVLNGKQGSLNNNGYIVNA GDSLVIKGFRKDKHTEAAFQFANVADSYAANSAQGDVRNTGVIGFAAFELQGPAQNAL PPCSGQAFPADNNGYAPPPCRK" mobile_element complement(3021465..3022228) /mobile_element_type="insertion sequence:IS1" gene complement(3021480..3021875) /gene="insB" /locus_tag="SF2929" /db_xref="GeneID:1025992" CDS complement(3021480..3021875) /gene="insB" /locus_tag="SF2929" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708703.1" /db_xref="GeneID:1025992" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKPLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3021483..3021872) /gene="insB" /locus_tag="SF2929" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3021902..3022177) /gene="insA" /locus_tag="SF2930" /db_xref="GeneID:1025945" CDS complement(3021902..3022177) /gene="insA" /locus_tag="SF2930" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708704.1" /db_xref="GeneID:1025945" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3021905..3022156) /gene="insA" /locus_tag="SF2930" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(3022206..3024212) /gene="speA" /locus_tag="SF2931" /db_xref="GeneID:1026003" CDS complement(3022206..3024212) /gene="speA" /locus_tag="SF2931" /note="Code: E; COG: COG1166" /codon_start=1 /transl_table=11 /product="arginine decarboxylase" /protein_id="NP_708705.1" /db_xref="GeneID:1026003" /translation="MRFAMSDDMSMGLPSSAGEHGVLRSMQEVAMSSQEASKMLRTYN IAWWGNNYYDVNELGHISVCPDPDVPEARVDLAQLVKTREAQGQRLPALFCFPQILQH RLRSINAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELM AVLAHAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLDEAERLN VVPRLGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLREAGRLDSLQLLHFH LGSQMANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNY GLNEYANNIIWAIGDACEENGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTVPT APVEDAPRALQSMWETWQEMHEPGTRRSLREWLHDSQMDLHDIHIGYSSGTFSLQERA WAEQLYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQL FPVLPLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGF FMVGAYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTL LTQFRDQVKKTDLDAELQQQFLEEFEAGLYGYTYLEDDAANLLI" misc_feature complement(3022227..3024137) /gene="speA" /locus_tag="SF2931" /note="biosynthetic arginine decarboxylase; Region: PRK05354" /db_xref="CDD:235427" misc_feature complement(order(3022467..3022475,3022482..3022490, 3022608..3022610,3022614..3022622,3022626..3022628, 3022728..3022730,3022737..3022739,3022743..3022745, 3022749..3022751,3022764..3022766,3023064..3023072, 3023469..3023480,3023586..3023588,3023598..3023600, 3023610..3023612,3023670..3023672,3023739..3023744, 3023748..3023753,3023820..3023822,3023943..3023945)) /gene="speA" /locus_tag="SF2931" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143503" misc_feature complement(order(3022473..3022475,3022485..3022487, 3022497..3022499,3022614..3022619,3023112..3023123, 3023265..3023270,3023376..3023378,3023385..3023387, 3023535..3023537,3023685..3023687,3023757..3023759, 3023820..3023822,3023826..3023828)) /gene="speA" /locus_tag="SF2931" /note="active site" /db_xref="CDD:143503" misc_feature complement(order(3022497..3022499,3022617..3022619, 3023112..3023123,3023265..3023270,3023376..3023378, 3023385..3023387,3023535..3023537,3023685..3023687, 3023757..3023759,3023820..3023822,3023826..3023828)) /gene="speA" /locus_tag="SF2931" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143503" misc_feature complement(order(3022617..3022619,3023820..3023822)) /gene="speA" /locus_tag="SF2931" /note="catalytic residues [active]" /db_xref="CDD:143503" misc_feature complement(order(3022473..3022475,3022485..3022487, 3022497..3022499,3022614..3022619,3023112..3023114, 3023376..3023378)) /gene="speA" /locus_tag="SF2931" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143503" gene complement(3024209..3024355) /gene="yqgB" /locus_tag="SF2932" /db_xref="GeneID:1025957" CDS complement(3024209..3024355) /gene="yqgB" /locus_tag="SF2932" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708706.1" /db_xref="GeneID:1025957" /translation="MLNNVMKKKPVAQSERQHTLLENPCAYGLLSQFQAATVVNCFTL NKII" misc_feature complement(3024212..3024340) /gene="yqgB" /locus_tag="SF2932" /note="Virulence promoting factor; Region: YqgB; cl12603" /db_xref="CDD:416600" gene complement(3024688..3024939) /locus_tag="SF2932a" /db_xref="GeneID:16608354" CDS complement(3024688..3024939) /locus_tag="SF2932a" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_008439278.1" /db_xref="GeneID:16608354" /translation="MVADPTTTLQVKNTGSLSVNRYGWINIWMAILGQFFTRFPLFFE SCLILLKTWLEIFPDNAGILRIYLLQFSAIVGYKTRRAA" gene 3024995..3026149 /gene="metK" /locus_tag="SF2933" /db_xref="GeneID:1025940" CDS 3024995..3026149 /gene="metK" /locus_tag="SF2933" /note="Code: H; COG: COG0192" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine synthetase" /protein_id="NP_708707.2" /db_xref="GeneID:1025940" /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILEQDPKARVACET YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPAEWLT SATKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPSEQLTLLVREFF DLRPYGLIQMLDLLHPIYKETAAYGHFGREHFPWEKTDKAQLLRDAAGLK" misc_feature 3025001..3026140 /gene="metK" /locus_tag="SF2933" /note="S-adenosylmethionine synthetase [Coenzyme transport and metabolism]; Region: MetK; COG0192" /db_xref="CDD:439962" gene 3026625..3027980 /gene="galP" /locus_tag="SF2934" /db_xref="GeneID:1025946" CDS 3026625..3027980 /gene="galP" /locus_tag="SF2934" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="MFS family galactose:proton symporter" /protein_id="NP_708708.2" /db_xref="GeneID:1025946" /translation="MTFFVCFLAALAGLLFGLDIGVIAGALPFIADEFQITSHTQEWV VSSMMFGAAVGAVGIGWLSFKLGRKKSLMIGAILFVAGSLFSAAAPNVEVLILSRVLL GLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLSDTAFSYTGAWRWM LGVIIIPAILLLIGVFFLPDSPRWFAAKRRFVDAERVLLRLRDTSAEAKRELDEIRES LQVKQSGWALFKENSNFRRAVFLGVLLQVMQQFTGMNVIMYYAPKIFELAGYTNTTEQ MWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAAGMGVLGTMMHIGIHSPSA QYFAIAMLLMFIVGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTATNWIANMIVGATF LTMLNTLGNANTFWVYAALNVLFILLTLWLVPETKHVSLEHIERNLMKGRKLREIGAH D" misc_feature 3026625..3027926 /gene="galP" /locus_tag="SF2934" /note="MFS transporter, sugar porter (SP) family; Region: SP; TIGR00879" /db_xref="CDD:273317" misc_feature order(3026670..3026672,3026682..3026684,3027024..3027026, 3027033..3027038,3027045..3027047,3027369..3027374, 3027384..3027389,3027396..3027401,3027483..3027485, 3027669..3027674,3027681..3027686,3027696..3027698, 3027765..3027770,3027777..3027779) /gene="galP" /locus_tag="SF2934" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340873" gene 3028057..3028554 /gene="sprT" /locus_tag="SF2935" /db_xref="GeneID:1025996" CDS 3028057..3028554 /gene="sprT" /locus_tag="SF2935" /note="Code: S; COG: COG3091" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708709.1" /db_xref="GeneID:1025996" /translation="MKISRLPIAIQQAVMRRLREKLAQANLKLGRNYPEPKLSYTQRG TSAGTAWLESYEIRLNPVLLLENSEAFIEEVVPHELAHLLVWKHFGRVAPHGKEWKWM MESVLGVPARRTHQFELQSVRRNTFPYRCKCQEHQLTVRRHNRVVRGEAIYRCVHCGE QLVAK" misc_feature 3028084..3028551 /gene="sprT" /locus_tag="SF2935" /note="SprT family zinc-dependent metalloprotease; Region: PRK04860" /db_xref="CDD:179886" gene 3028649..3029356 /gene="endA" /locus_tag="SF2936" /db_xref="GeneID:1024412" CDS 3028649..3029356 /gene="endA" /locus_tag="SF2936" /note="Code: L; COG: COG2356" /codon_start=1 /transl_table=11 /product="DNA-specific endonuclease I" /protein_id="NP_708710.2" /db_xref="GeneID:1024412" /translation="MYRYLSIAAVVLSAAFSGPTLAEGINSFSQAKAAAVKVHADAPG TFYCGCKINWQGKKGVVDLQSCGYQVRKNENRASRVEWEHVVPAWQFGHQRQCWQDGG RKNCAKDPVYRKMESDMHNLQPSVGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKEK AAEPPARARGAIARTYFYMRDQYNLTLSRQQTQLFNAWNKMYPVTDWECERDERIAKV QGNHNPYVQRACQARKS" misc_feature 3028649..3029353 /gene="endA" /locus_tag="SF2936" /note="DNA-specific endonuclease I; Provisional; Region: PRK15137" /db_xref="CDD:185091" gene 3029436..3030167 /gene="yggJ" /locus_tag="SF2937" /db_xref="GeneID:1025941" CDS 3029436..3030167 /gene="yggJ" /locus_tag="SF2937" /note="Code: S; COG: COG1385" /codon_start=1 /transl_table=11 /product="16S ribosomal RNA methyltransferase RsmE" /protein_id="NP_708711.2" /db_xref="GeneID:1025941" /translation="MRIPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFD GSNQVFDAEITSASKKSVEVKVLEGQIDDRESPLHIHLGQVMSRGEKMEFTIQKSIEL GVSLITPLFSERCGVKLDSERLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWC AEQDEGLKLNLHPRASNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLG PRVLRTETTALTAITALQVRFGDLG" misc_feature 3029439..3030161 /gene="yggJ" /locus_tag="SF2937" /note="RNA methyltransferase, RsmE family; Region: TIGR00046" /db_xref="CDD:272873" gene 3030180..3031130 /gene="gshB" /locus_tag="SF2938" /db_xref="GeneID:1023882" CDS 3030180..3031130 /gene="gshB" /locus_tag="SF2938" /note="Code: HJ; COG: COG0189" /codon_start=1 /transl_table=11 /product="glutathione synthetase" /protein_id="NP_708712.1" /db_xref="GeneID:1023882" /translation="MIKLGIVMDPIANINIKKDSSFAMLLEAQRRGYELHYMEMGDLY LINGEARAHTRTLNVKQNYEEWFSFVGEQDLPLADLDVILMRKDPPFDTEFIYATYIL ERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILK PLDGMGGASIFRVKEGDPNLGVIAETLTEHGTCYCMAQNYLPAIKDGDKRVLVVDGEP VPYCLARIPQGGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIG DRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQQQ" misc_feature 3030180..3031127 /gene="gshB" /locus_tag="SF2938" /note="glutathione synthetase; Provisional; Region: PRK05246" /db_xref="CDD:235371" gene 3031167..3031802 /gene="yqgE" /locus_tag="SF2939" /db_xref="GeneID:1026000" CDS 3031167..3031802 /gene="yqgE" /locus_tag="SF2939" /note="Code: K; COG: COG1678" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708713.3" /db_xref="GeneID:1026000" /translation="MTAPFFPRILGAVAFLNQETEPLTMNLQHHFLIAMPALQDPIFR RSVVYICEHNTNGAMGIIVNKPLENLKIEGILEKLKITPEPRDESIRLDKPVMLGGPL AEDRGFILHTPPSNFASSIRISDNTVMTTSRDVLETLGTDKQPSDVLVALGYASWEKG QLEQEILDNAWLTAPADLNILFKTPIADRWREAAKLIGVDILTMPGVAGHA" misc_feature 3031230..3031799 /gene="yqgE" /locus_tag="SF2939" /note="YqgE/AlgH family protein; Region: PRK00228" /db_xref="CDD:234694" gene 3031802..3032218 /gene="yqgF" /locus_tag="SF2940" /db_xref="GeneID:1025943" CDS 3031802..3032218 /gene="yqgF" /locus_tag="SF2940" /note="Code: L; COG: COG0816" /codon_start=1 /transl_table=11 /product="Holliday junction resolvase-like protein" /protein_id="NP_708714.1" /db_xref="GeneID:1025943" /translation="MSGTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNL IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHDERLSTVE ARSGLFEQGGYRALNKGKVDSASAVIILESYFEQGY" misc_feature 3031802..3032209 /gene="yqgF" /locus_tag="SF2940" /note="Holliday junction resolvase RuvX; Region: PRK00109" /db_xref="CDD:234639" misc_feature order(3031832..3031840,3031901..3031903,3031985..3031993, 3032015..3032020,3032090..3032092,3032156..3032158) /gene="yqgF" /locus_tag="SF2940" /note="putative nucleic acid substrate binding site [nucleotide binding]; other site" /db_xref="CDD:438564" misc_feature order(3031874..3031882,3032147..3032149,3032159..3032161, 3032168..3032173,3032180..3032185,3032192..3032194, 3032204..3032206) /gene="yqgF" /locus_tag="SF2940" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:438564" gene complement(3032394..3033419) /gene="yggR" /locus_tag="SF2942" /db_xref="GeneID:1025948" CDS complement(3032394..3033419) /gene="yggR" /locus_tag="SF2942" /note="Code: N; COG: COG2805" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708715.2" /db_xref="GeneID:1025948" /translation="MPGYAQYRSFSEDLSMNMEEIVALSVKHNVSDLHLCSAWPARWR IRGRMEAAPFDAPDVEELLREWLDDDQRAILLENGQLDFAVSLAENQRLRGSAFAQRQ GISLALRLLPSHCPQLEQLGAPPVLPELLKSENGLILVTGATGSGKSTTLAAMVGYLN QHADAHILTLEDPVEYLYASQRCLIQQREIGLHCMTFASGLRAALREDPDVILLGELR DSETIRLALTAAETGHLVLATLHTRGAAQAVERLVDSFPAQEKDPVRNQLAGSLRAVL SQKLEVDKQEGRVALFELLINTPAVGNLIREGKTHQLPHVIQTGQKVGMLTFQQSYQQ RVGEGRL" misc_feature complement(3032397..3033371) /gene="yggR" /locus_tag="SF2942" /note="Members of the P-loop NTPase domain superfamily are characterized by a conserved nucleotide phosphate-binding motif, also referred to as the Walker A motif (GxxxxGK[S/T], where x is any residue), and the Walker B motif (hhhh[D/E], where h is a...; Region: P-loop containing Nucleoside Triphosphate Hydrolases; cl38936" /db_xref="CDD:476819" misc_feature complement(order(3032550..3032552,3032556..3032558, 3032580..3032582,3032697..3032699,3032895..3032897, 3032970..3032993,3033057..3033059)) /gene="yggR" /locus_tag="SF2942" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:410875" misc_feature complement(order(3032502..3032504,3032511..3032513, 3032610..3032612,3032622..3032624,3032631..3032633, 3032724..3032729,3032790..3032792,3032796..3032804, 3032811..3032813,3032823..3032825,3032841..3032843, 3032853..3032870,3032886..3032891,3032898..3032900, 3032922..3032927,3032988..3032993)) /gene="yggR" /locus_tag="SF2942" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:410875" gene 3033392..3034096 /gene="yggS" /locus_tag="SF2941" /db_xref="GeneID:1026823" CDS 3033392..3034096 /gene="yggS" /locus_tag="SF2941" /note="Code: R; COG: COG0325" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708716.1" /db_xref="GeneID:1026823" /translation="MNDIAHNLAQVRDKISAAATRCGRSPEEITLLAVSKTKPASAIA EAIDAGQRQFGENYVQEGVDKIRHFQELGVTGLEWHFIGPLQSNKSRLVAEHFDWCHT IDRLRIATRLNEQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRL RGLMAIPALESEYVRQFEVARQMAVAFAGLKTRYPHIDTLSLGMSDDMEAAIAAGSTM VRIGTAIFGARDYSKK" misc_feature 3033398..3034075 /gene="yggS" /locus_tag="SF2941" /note="Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins; Region: PLPDE_III_Yggs_like; cd06824" /db_xref="CDD:143497" misc_feature order(3033491..3033493,3033497..3033499,3033560..3033562, 3033635..3033637,3033887..3033889,3034001..3034003, 3034049..3034051,3034055..3034060) /gene="yggS" /locus_tag="SF2941" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143497" misc_feature 3033497..3033499 /gene="yggS" /locus_tag="SF2941" /note="catalytic residue [active]" /db_xref="CDD:143497" gene 3034114..3034680 /gene="yggT" /locus_tag="SF2943" /db_xref="GeneID:1026030" CDS 3034114..3034680 /gene="yggT" /locus_tag="SF2943" /note="Code: S; COG: COG0762" /codon_start=1 /transl_table=11 /product="resistance protein" /protein_id="NP_708717.1" /db_xref="GeneID:1026030" /translation="MNTLTFLLSTVIELYTMVLLLRIWMQCAHCDFYTPFSQFVVKVA QPIIGPLRRVIPAMGPIDSASLLVAYILSFIKAIVLFEVVTFLPIIWIAGLLILLKTI GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLADPLLRPIRRLLPAMGGIDFSPMILVL LLYAINMGVAEVLQATGNMLLPGLWMAL" misc_feature 3034138..3034347 /gene="yggT" /locus_tag="SF2943" /note="YGGT family; Region: YGGT; pfam02325" /db_xref="CDD:460533" misc_feature 3034387..3034635 /gene="yggT" /locus_tag="SF2943" /note="Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones]; Region: Ycf19; COG0762" /db_xref="CDD:440525" gene 3034665..3034967 /gene="yggU" /locus_tag="SF2944" /db_xref="GeneID:1026326" CDS 3034665..3034967 /gene="yggU" /locus_tag="SF2944" /note="Code: S; COG: COG1872" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708718.3" /db_xref="GeneID:1026326" /translation="MDGVMSAVTVNDDGLVLRLYIQPKASRDSIVGLHGDEVKVAITA PPVDGQANSHLVKFLGKQFRVAKSQVVIEKGELGRHKQIKIINPQQIPPEIAALIN" misc_feature 3034677..3034961 /gene="yggU" /locus_tag="SF2944" /note="hypothetical protein; Validated; Region: PRK05090" /db_xref="CDD:179931" gene 3034975..3035568 /gene="yggV" /locus_tag="SF2945" /db_xref="GeneID:1025936" CDS 3034975..3035568 /gene="yggV" /locus_tag="SF2945" /note="Code: F; COG: COG0127" /codon_start=1 /transl_table=11 /product="dITP/XTP pyrophosphatase" /protein_id="NP_708719.1" /db_xref="GeneID:1025936" /translation="MQKVVLATGNAGKVRELASLLSDFGLDIVAQTDLGVDSAEETGL TFIENAILKARHAAKVTGLPAIADDSGLAVDALGGAPGIYSARYSGEDATDQKNLQKL LETLKDVPDDQRQARFHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGFGYDPIF FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG" misc_feature 3034978..3035565 /gene="yggV" /locus_tag="SF2945" /note="dITP/XTP pyrophosphatase; Reviewed; Region: PRK00120" /db_xref="CDD:234648" misc_feature order(3035002..3035004,3035008..3035013,3035020..3035022, 3035182..3035190,3035227..3035232,3035326..3035328, 3035434..3035436,3035440..3035445,3035518..3035523) /gene="yggV" /locus_tag="SF2945" /note="active site" /db_xref="CDD:238285" misc_feature order(3035095..3035103,3035203..3035208,3035215..3035217, 3035224..3035226,3035233..3035235) /gene="yggV" /locus_tag="SF2945" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238285" gene 3035561..3036697 /gene="yggW" /locus_tag="SF2946" /db_xref="GeneID:1025947" CDS 3035561..3036697 /gene="yggW" /locus_tag="SF2946" /note="Code: H; COG: COG0635" /codon_start=1 /transl_table=11 /product="HemN family oxidoreductase" /protein_id="NP_708720.1" /db_xref="GeneID:1025947" /translation="MVKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL CDLDNDVAYAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLPLAADAEITMEANP GTVEADRFVDYQRAGVNRISIGVQSFSEEKLKRLGRIHGPQEAKRAAKLASGLGLRSF NLDLMHGLPDQSLEEALGDLRQAIELNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYIGIGCGAHGKVTFPDG RILRTTKTRHPRGFMQGRYLESQRDVEAADKPFEFFMNRFRLLEAAPRVEFIAYTGLC EDVIRPQLDEAIAQGYLTECADYWQITEHGKLFLNSLLELFLAE" misc_feature 3035561..3036694 /gene="yggW" /locus_tag="SF2946" /note="Coproporphyrinogen-III oxidase HemN (oxygen-independent) or related Fe-S oxidoreductase [Coenzyme transport and metabolism]; Region: HemN; COG0635" /db_xref="CDD:440400" misc_feature 3036652..3040655 /note="SI#48" gene 3037011..3037974 /locus_tag="SF2947" /pseudogene="unknown" /db_xref="GeneID:1026497" gene 3038019..3038522 /locus_tag="SF2949" /db_xref="GeneID:1025942" CDS 3038019..3038522 /locus_tag="SF2949" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708723.2" /db_xref="GeneID:1025942" /translation="MIFNRLKLAVDRVIATFSVAVMLALVVCVVWQVFSRYVLNQPST LTDELARFLMIWVGLLGAAYTVGAQRHLSIDLFALALNKRKQLLLSIVINVLILGFAG SVIVTGGLKLIDKTLATSQVSAAMQIPMGYVYIILPLSGVVMMFYALCFINQSIQQLK QPAQEAS" misc_feature 3038022..3038465 /locus_tag="SF2949" /note="TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism]; Region: DctM; COG3090" /db_xref="CDD:442324" mobile_element complement(3038530..3039297) /mobile_element_type="insertion sequence:IS1" gene complement(3038545..3038940) /gene="insB" /locus_tag="SF2950" /db_xref="GeneID:1025949" CDS complement(3038545..3038940) /gene="insB" /locus_tag="SF2950" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708724.1" /db_xref="GeneID:1025949" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3038548..3038937) /gene="insB" /locus_tag="SF2950" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3038967..3039242) /gene="insA" /locus_tag="SF2951" /db_xref="GeneID:1026173" CDS complement(3038967..3039242) /gene="insA" /locus_tag="SF2951" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708725.1" /db_xref="GeneID:1026173" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3038970..3039221) /gene="insA" /locus_tag="SF2951" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3039299..3040600 /locus_tag="SF2952" /db_xref="GeneID:1025938" CDS 3039299..3040600 /locus_tag="SF2952" /note="Code: S; COG: COG1593" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708726.2" /db_xref="GeneID:1025938" /translation="MDSYIAITLFGCFFVLVFIGVPISFSIGIATVASMLLMFPWDIA AITVSQRLANGLDNFALLAIPFFIFAGTLMNSGGIAIRLINLAQVMVGRVPGSLGHVN VLANMMFGSISGSAVAAAAAVGGTLNPIQTKEGYDPAFSTAVNVSSCITGLLIPPSNV LIVFSLTAGGVSVASLFMAGYLPGILMGLAVMIVCGIIAKRRGYPLSERATFAQACKA FLDALPSLLLVFIVMGGILGGIFTATEASAIAVVYTFILSVLIYREVKWRHLPKLILE SVVTTSIVLLLIGFSVGMSWAMTNADIPYMISDALMGISDNPLIILLLINIVLLIVGI FMDMTPAVLIFTPIFLPIAQELGMDPVHFGIMMVANLCIGLLTPPVGSALFVGCSISG VKIQHLIKPLLLFYAALLVALMMITYIPQISLFIPQLLGLM" misc_feature 3039311..3040594 /locus_tag="SF2952" /note="TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]; Region: DctQ; COG1593" /db_xref="CDD:441201" gene complement(3040701..3041663) /gene="yggM" /locus_tag="SF2953" /db_xref="GeneID:1026312" CDS complement(3040701..3041663) /gene="yggM" /locus_tag="SF2953" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708727.2" /db_xref="GeneID:1026312" /translation="MKKQWIVGTALLMLMTGNAWADGEPPTENILKDQFKKQYHGILK LDAISLKNLDAKGNQATWSAEGDVSSSDDLYTWVGQLADYELLEQTWTKDKPVKFSAM LTSKGTPASGWSVNFYSFQAAASDRGRVVDDIKTNNKYLIVNSEDFNYRFSQLESALN TQKNSIPALEKEVKALDKQMVAAQKAADAYWGKDANGKQMTREEAFKKIHQQRDEFNK QNDSEAFAVKYDKEVYQPAIAACHKQSEECYEVPIQQKRDFDINEQRRQTFLQSQKLS RKLQDDWVTLEKGQYPLTMKVSEINSKKVAILMKIDDINQANER" misc_feature complement(3040704..3041624) /gene="yggM" /locus_tag="SF2953" /note="Protein of unknown function (DUF1202); Region: DUF1202; pfam06717" /db_xref="CDD:284194" gene complement(3041780..3042826) /gene="ansB" /locus_tag="SF2954" /db_xref="GeneID:1025950" CDS complement(3041780..3042826) /gene="ansB" /locus_tag="SF2954" /note="Code: EJ; COG: COG0252" /codon_start=1 /transl_table=11 /product="L-asparaginase II" /protein_id="NP_708728.1" /db_xref="GeneID:1025950" /translation="MEFFKKTALAALVMGFSGAALALPNITILATGGTIAGGGDSATK SNYTAGKVGVENLVNAVPQLKDIANVKGEQVVNIGSQDMNDNVWLTLAKKINADCDKT DGFVITHGTDTMEETAYFLDLTVKCDKPVVMVGAMRPSTSMSADGPFNLYNAVVTAAD KASANRGVLVVMNDTVLDGRDVTKTNTTDVATFKSVNYGPLGYIHNGKIDYQRTPARK HTSDTPFDVSKLNELPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKSVF DTLATAAKNGTAVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ TKDPQQIQQIFNQY" misc_feature complement(3041783..3042823) /gene="ansB" /locus_tag="SF2954" /note="L-asparaginase II; Provisional; Region: ansB; PRK11096" /db_xref="CDD:182958" misc_feature complement(order(3042275..3042277,3042419..3042421, 3042491..3042499,3042584..3042589,3042725..3042730)) /gene="ansB" /locus_tag="SF2954" /note="active site" /db_xref="CDD:199205" misc_feature complement(order(3041852..3041854,3041861..3041866, 3041930..3041935,3041948..3041950,3042011..3042013, 3042017..3042019,3042023..3042031,3042035..3042037, 3042059..3042061,3042068..3042073,3042080..3042085, 3042089..3042091,3042101..3042109,3042113..3042121, 3042263..3042277,3042416..3042418,3042479..3042481, 3042488..3042493,3042563..3042565,3042572..3042586, 3042590..3042592)) /gene="ansB" /locus_tag="SF2954" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:199205" gene complement(3043002..3043718) /gene="yggN" /locus_tag="SF2955" /db_xref="GeneID:1025933" CDS complement(3043002..3043718) /gene="yggN" /locus_tag="SF2955" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708729.2" /db_xref="GeneID:1025933" /translation="MRKMLLAAALSVTAMTAHADYQCSVTPRDDVIVSPQTVQVKGEN GNLVITPDGNVMYNGKQYSLNAAQREQAKDYQAELRSTLPWIDEGAKSRVEKARIALD KIIVQEMGDSSKMRSRLTKLDAQLKEQMNRIIETRSDGLTFHYKAIDQVRAEGQQLVN QAMGGILQDSINEMGAKAVLKSGGNPLQNVLGSLGGLQSSIQTEWKKQEKDFQQFGKD VCSRVVTLEDSRKALVGNLK" misc_feature complement(3043005..3043718) /gene="yggN" /locus_tag="SF2955" /note="hypothetical protein; Provisional; Region: PRK10626" /db_xref="CDD:182597" gene complement(3043905..3044261) /gene="yggL" /locus_tag="SF2956" /db_xref="GeneID:1026362" CDS complement(3043905..3044261) /gene="yggL" /locus_tag="SF2956" /note="Code: S; COG: COG3171" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708730.3" /db_xref="GeneID:1026362" /translation="MGLNVREGEIMAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTS EEQIDKIVDDFINEVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEEC KLDEVRTSELFDVWWD" misc_feature complement(3043908..3044231) /gene="yggL" /locus_tag="SF2956" /note="hypothetical protein; Provisional; Region: PRK11702" /db_xref="CDD:183281" gene complement(3044231..3044950) /gene="trmB" /locus_tag="SF2957" /db_xref="GeneID:1026825" CDS complement(3044231..3044950) /gene="trmB" /locus_tag="SF2957" /note="Code: R; COG: COG0220" /codon_start=1 /transl_table=11 /product="tRNA (guanine-N(7)-)-methyltransferase" /protein_id="NP_708731.1" /db_xref="GeneID:1026825" /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV MGVEFSEDMLDFPALFGREAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGA CLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVP FAELVKSKLQLGGVFHMATDWEPYAEHMLEVMSSIDGYKNLSESNDYVPRPASRPVTK FEQRGHRLGHGVWDLMFERVK" misc_feature complement(3044243..3044863) /gene="trmB" /locus_tag="SF2957" /note="tRNA G46 N7-methylase TrmB [Translation, ribosomal structure and biogenesis]; Region: TrmB; COG0220" /db_xref="CDD:439990" gene 3045111..3046163 /gene="mutY" /locus_tag="SF2958" /db_xref="GeneID:1026355" CDS 3045111..3046163 /gene="mutY" /locus_tag="SF2958" /note="Code: L; COG: COG1194" /codon_start=1 /transl_table=11 /product="A/G-specific adenine glycosylase" /protein_id="NP_708732.2" /db_xref="GeneID:1026355" /translation="MQASQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQ VATVIPYFERFMAHFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG KFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEV ENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAATNNSWSL YPGKKPKQTLPERTGYFLLLQHEDEVLLAQRPPSGLWGGLYCFPQFADEESLRHWLAQ RQIAADNLTQLTAFRHTFSHFHLDIVPMWLPVSSFTGCMDEGNALWYNLAQPPSVGLA APVERLLQQLRTGAPV" misc_feature 3045111..3046160 /gene="mutY" /locus_tag="SF2958" /note="adenine DNA glycosylase; Region: PRK10880" /db_xref="CDD:182805" gene 3046191..3046466 /gene="yggX" /locus_tag="SF2959" /db_xref="GeneID:1026548" CDS 3046191..3046466 /gene="yggX" /locus_tag="SF2959" /note="Code: S; COG: COG2924" /codon_start=1 /transl_table=11 /product="oxidative damage protection protein" /protein_id="NP_708733.1" /db_xref="GeneID:1026548" /translation="MSRTIFCTFLQREAEGQDFQLYPGELGKRIYNEISKEAWAQWQH KQTMLINEKKLNMMNAEHRKLLEQEMVNFLFEGKEVHIEGYTPEDKK" misc_feature 3046191..3046460 /gene="yggX" /locus_tag="SF2959" /note="oxidative damage protection protein; Provisional; Region: PRK05408" /db_xref="CDD:180059" gene 3046528..3047610 /gene="mltC" /locus_tag="SF2960" /db_xref="GeneID:1026499" CDS 3046528..3047610 /gene="mltC" /locus_tag="SF2960" /note="Code: M; COG: COG0741" /codon_start=1 /transl_table=11 /product="murein transglycosylase C" /protein_id="NP_708734.1" /db_xref="GeneID:1026499" /translation="MMKKYLALALIAPLLISCSTTKKGDTYNEAWVKDTNGFDILMGQ FAHNIENIWGFKEVVIAGPKDYVKYTDQYQTRSHINFDDGTITIETIAGTEPAAHLRR AIIKTLLMGDDPSSVDLYSDVDDITISKEPFLYGQVVDNTGQPIRWEGRASNFADYLL KNRLKSRSNGLRIIYSVTINMVPNHLDKRAHKYLGMVRQASRKYGVDESLILAIMQTE SSFNPYAVSRSDALGLMQVVQNTAGKDVFRSQGKSGTPSRSFLFDPASNIDTGTAYLA MLNNVYLGGIDNPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANIINTMTPGDVYQTL TTRHPSAESRRYLYKVNTAQKSYRRR" misc_feature 3046531..3047607 /gene="mltC" /locus_tag="SF2960" /note="membrane-bound lytic murein transglycosylase MltC; Region: mltC; PRK11671" /db_xref="CDD:183271" gene 3047764..3049068 /gene="nupG" /locus_tag="SF2961" /db_xref="GeneID:1027502" CDS 3047764..3049068 /gene="nupG" /locus_tag="SF2961" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="nucleosides permease" /protein_id="NP_708735.1" /db_xref="GeneID:1027502" /translation="MCFFKHSSASRCEEINMNLKLQLKILSFLQFCLWGSWLTTLGSY MFVTLKFDGASIGAVYSSLGIAAVFMPALLGIVADKWLSAKWVYAICHTIGAITLFMA AQVTTPEAMFLVILINSFAYMPTLGLINTISYYRLQNAGMDIVTDFPPIRIWGTIGFI MAMWVVSLSGFELSHMQLYIGAALSAILVLFTLTLPHIPVAKQQANQSWTTLLGLDAF ALFKNKRMAIFFIFSMLLGAELQITNMFGNTFLHSFDKDPMFASSFIVQHASIIMSIS QISETLFILTIPFFLSRYGIKNVMMISIVAWILRFALFAYGDPTPFGTVLLVLSMIVY GCAFDFFNISGSVFVEKEVSPAIRASAQGMFLMMTNGFGCILGGIVSGKVVEMYTQNG ITDWQTVWLIFAGYSVVLAFAFMAMFKYKHVRVPTGTQTVSH" misc_feature 3047812..3049065 /gene="nupG" /locus_tag="SF2961" /note="nucleoside transporter; Region: 2A0110; TIGR00889" /db_xref="CDD:129967" misc_feature order(3047851..3047856,3047863..3047868,3047875..3047877, 3047974..3047976,3048127..3048132,3048136..3048144, 3048151..3048153,3048217..3048219,3048226..3048231, 3048238..3048240,3048460..3048462,3048469..3048474, 3048481..3048489,3048496..3048498,3048601..3048603, 3048613..3048615,3048772..3048777,3048787..3048789, 3048799..3048801,3048847..3048849,3048856..3048861, 3048868..3048873,3048880..3048882) /gene="nupG" /locus_tag="SF2961" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340866" gene complement(3049117..3051312) /gene="speC" /locus_tag="SF2962" /db_xref="GeneID:1025998" CDS complement(3049117..3051312) /gene="speC" /locus_tag="SF2962" /note="Code: E; COG: COG1982" /codon_start=1 /transl_table=11 /product="ornithine decarboxylase" /protein_id="NP_708736.2" /db_xref="GeneID:1025998" /translation="MGQGFPPCPVFLLPRNGFALMKSMNIAASSELVSRLSSHRRVVA LGDTDFTDVAAVVITAADSRSGILALLKRTGFHLPVFLYSEHAVELPAGVTAVINGNE QQWLELESAACQYEENLLPPFYDTLTQYVEMGNSTFACPGHQHGAFFKKHPAGRHFYD FFGENVFRADMCNADVKLGDLLIHEGSAKDAQKFAAKVFHADKTYFVLNGTSAANKVV TNALLTRGDLVLFDRNNHKSNHHGALIQAGTTPVYLEASRNPFGFIGGIDAHCFNEEY LRQQIRDVAPEKADLPRPFRLTIIQLGTYDGTVYNARQVIDTIGHLCDYILFDSAWVG YEQFISMMADSSPLLLELNENDPGIFVTQLVHKQQAGFSQTSQIHKKDNHIRGQARFC PHKRLNNAFMLHASTSPFYPLFAALDVNAKIHEGESGRRLWAECVELGIESRKAILAR CKLFRPFIPPVVDGKLWQDYPTSVLASDRRFFSFEPGAKWHGFEGYAADQYFVDPCKL LLTTPGINAETGEYSDFGVPATILAHYLRENGIVPEKCDLNSILFLLTPAESHEKLAQ LVAMLAQFEQHIEDDSSLAEVLPSVYNKYPVRYRDYTLRQLCQEMHDLYVSFDVKDLQ KAMFRQQSFPSVVMNPQDAHSAYIRGEVELVRIRDAEGRIAAEGALPYPPGVLCVVPG EVWGGAVQRYFLALEEGVNLLPGFSPELQGVYSETDADGMKRLYGYVLK" misc_feature complement(3049120..3051252) /gene="speC" /locus_tag="SF2962" /note="ornithine decarboxylase; Provisional; Region: PRK13578" /db_xref="CDD:237434" gene 3051650..3052357 /gene="yqgA" /locus_tag="SF2963" /db_xref="GeneID:1026404" CDS 3051650..3052357 /gene="yqgA" /locus_tag="SF2963" /note="Code: R; COG: COG1811" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708737.1" /db_xref="GeneID:1026404" /translation="MVIGPFINASAVLLGGVLGALLSQRLPERIRVSMTSIFGLASLG IGILLVVKCANLPAMVLATLLGALIGEICLLEKGVNTAVAKAQNLFRHSRKKPAHESF IQNYVAIIVLFCASGTGIFGAMNEGMTGDPSILIAKSFLDFFTAMIFACSLGIAVSVI SIPLLIIQLTLAWAAALILPLITPSMMADFSAVGGLLLLATGLRICGIKMFPVVNMLP ALLLAMPLSAAWTAWFA" misc_feature 3051650..3052348 /gene="yqgA" /locus_tag="SF2963" /note="Uncharacterized membrane protein YqgA, affects biofilm formation [Function unknown]; Region: YqgA; COG1811" /db_xref="CDD:441416" gene 3052463..3052538 /locus_tag="SF4507" /db_xref="GeneID:3161811" tRNA 3052463..3052538 /locus_tag="SF4507" /product="tRNA-Phe" /codon_recognized="UUC" /db_xref="GeneID:3161811" gene 3052736..3053998 /locus_tag="SF2964" /db_xref="GeneID:1026309" CDS 3052736..3053998 /locus_tag="SF2964" /note="Code: L; COG: COG0582" /codon_start=1 /transl_table=11 /product="P4-type integrase" /protein_id="NP_708738.1" /db_xref="GeneID:1026309" /translation="MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRI LGKEKTLALGVYPEVSLSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIA RRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEI ASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALELSRLPELLSRIDG YKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGS KMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDT TQEVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLML QWWADFLDANREKGISPFEYAKINNPLK" misc_feature 3052739..3053953 /locus_tag="SF2964" /note="Integrase/recombinase, includes phage integrase [Replication, recombination and repair, Mobilome: prophages, transposons]; Region: FimB; COG0582" /db_xref="CDD:440347" gene 3054451..3057966 /locus_tag="SF2965" /db_xref="GeneID:1026317" CDS 3054451..3057966 /locus_tag="SF2965" /codon_start=1 /transl_table=11 /product="superfamily I DNA helicase" /protein_id="NP_708739.1" /db_xref="GeneID:1026317" /translation="MDENALGFASYWRNSLADAESGKGSFKRKDAQNFTHWHGIAAGR LDEAIVSKFFEGEKDDVETVDVILRPKVYFRLLQHGKDRSAGAPDIVTPIVTPALLSR EGFLYPTPATSIPRDLLEPLPKGAFSIGEIGQYDKYKTTHTTFSINFDDSVDKTAETD EEREARYAALQQEWRQYLYDSERLLKSVAGDWIEKPEQYELAEHGYIVKTAQSGGASS HILSLYDHLLVCNKDVPLFNRFASREVHAAESLLAPGAKFSDRLGHSGDKFPLAKAQR DALSHFLDARHGDILAVNGPPGTGKTTLVLSIIATQWARAALEKSEPPVIIATSTNNQ AVTNIIEAFGKDFSQGSGAMAGRWLPELKSFGAYFPSSSRKAEAAKKYQTEDFFNQVE SKEYVEDALLFYLEKAKAAFPGKECSSPEKVIELLHGQLAAKSEQLIRLNATWQTLSQ IRAARELIANDIEQYLDNLNKLLSGQEQKVTLLKSAKTEWKKYRAGESLIYSLFSWLP AVRNKRQYQIQLFLEDKLGALIAGNQWSDPETIERNIDGLLNSAEREQTTYRQQIDSA HEIVLKEQQAVQEWQRLAFDLGYEGDEELSFSQADELADTQIRFPAFLLTTHYWEGRW LMDMASIDDLQDEKKKKGAKGVTARWQRRMKLTPCVVMTCYMLPGNMQISEHKGQRKF EKSYLYDFADLLIVDEAGQVLPEVAAASFALAKKALVIGDTEQIPPIWSIAPAIDVGN MLAEKILSGSTQEEITEKYTAIADLGKSAASGSVMKIAQFASRYQYDPELARGMYLYE HRRCYDNIIGYCNTLCYHGKLLPKRGREESNLMPAMGYLHIDGKGELASSGSRYNLLE AETIAVWLAENQQNIEAHYGKSLHEVVGIVTPFSAQVSTIKQVLGKQDISTGTNEKSL TVGTVHSLQGAERAIVIFSPVYSKHEDGGFIDSDNSMLNVAVSRAKDSFLVFGDMDLF EVQPASSPRGLLAKYLFESEKNALSFDYKERKDLKTAGTKIYTLHGVEQHDNFLNQTF ENTSKHITIISPWLTWQRLEQTGFLDSMIAACSRGINVTIVTDRSYNTEHNDFEKRKE KQQNFKAALEKLNALGIATKLVNRVHSKIVIGDDGLLCVGSFNWFSATREARYERYDT SMVYCGDNLKGEIEAIYNSLERRQV" misc_feature 3054919..3057414 /locus_tag="SF2965" /note="Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]; Region: DNA2; COG1112" /db_xref="CDD:440729" misc_feature 3057511..3057957 /locus_tag="SF2965" /note="C-terminal domain of Escherichia coli uncharacterized protein yjhR and similar proteins; Region: PLDc_yjhR_C_like; cd09118" /db_xref="CDD:197217" misc_feature order(3057790..3057792,3057796..3057798,3057835..3057837, 3057841..3057843,3057883..3057885) /locus_tag="SF2965" /note="putative active site [active]" /db_xref="CDD:197217" misc_feature 3057790..3057792 /locus_tag="SF2965" /note="catalytic site [active]" /db_xref="CDD:197217" mobile_element 3058106..3058321 /note="partial" /mobile_element_type="insertion sequence:IS600" gene complement(3059000..3059248) /locus_tag="SF2967a" /db_xref="GeneID:16608355" CDS complement(3059000..3059248) /locus_tag="SF2967a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439279.1" /db_xref="GeneID:16608355" /translation="MCVTEVPEVFFQACGSLRNTVVTFDGAVEGLPLITDPVGVVGDI IRIGELRADGRKQDAGLMRDAKSTMYISVLKARRRKKL" gene 3059315..3060076 /locus_tag="SF2967" /db_xref="GeneID:1026553" CDS 3059315..3060076 /locus_tag="SF2967" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708741.2" /db_xref="GeneID:1026553" /translation="MVKSHGTVSVDGKVSDADLTYLEEVANSTGQEVDKSRLTSQACA RTALITDVGIALATELETAGQKWSLGFPPKFQRVDLFNYNVLVRNYDSSAFKGDRYHN TKNGINADIGASTDLDDNWTLGLVAQNLISRSIETKEVNGITETFRIRPQVTAGVSWH NAMFTTAFDVDLTPASGFTSDSNRQFAAIGTEFNAWKWAQLRAGYRQNLAGNDGSAFT AGVGISPFDVVHLDVAGLIGTDNTYGAVAQFQFTF" misc_feature <3059330..3059827 /locus_tag="SF2967" /note="F plasmid transfer operon, TraF, protein; Region: TraF_2; cl16365" /db_xref="CDD:472910" gene 3060437..3064294 /gene="sigA" /locus_tag="SF2968" /db_xref="GeneID:1026065" CDS 3060437..3064294 /gene="sigA" /locus_tag="SF2968" /codon_start=1 /transl_table=11 /product="serine protease" /protein_id="NP_708742.1" /db_xref="GeneID:1026065" /translation="MNKIYSLKYSHITGGLVAVSELTRKVSVGTSRKKVILGIILSSI YGSYGETAFAAMLDINNIWTRDYLDLAQNRGEFRPGATNVQLMMKDGKIFHFPELPVP DFSAVSNKGATTSIGGAYSVTATHNGTQHHAITTQSWDQTAYKASNRVSSGDFSVHRL NKFVVETTGVTESADFSLSPEDAMKRYGVNYNGKEQIIGFRAGAGTTSTILNGKQYLF GQNYNPDLLSASLFNLDWKNKSYIYTNRTPFKNSPIFGDSGSGSYLYDKEQQKWVFHG VTSTVGFISSTNIAWTNYSLFNNILVNNLKKNFTNTMQLDGKKQELSSIIKDKDLSVS GGGVLTLKQDTDLGIGGLIFDKNQTYKVYGKDKSYKGAGIDIDNNTTVEWNVKGVAGD NLHKIGSGTLDVKIAQGNNLKIGNGTVILSAEKAFNKIYMAGGKGTVKINAKDALSES GNGEIYFTRNGGTLDLNGYDQSFQKIAATDAGTTVTNSNVKQSTLSLTNTDAYMYHGN VSGNISINHIINTTQQHNNNANLIFDGSVDIKNDISVRNAQLTLQGHATEHAIFKEGN NNCPIPFLCQKDYSAAIKDQESTVNKRYNTEYKSNNQIASFSQPDWESRKFNFRKLNL ENATLSIGRDANVKGHIEAKNSQIVLGNKTAYIDMFSGRNITGEGFGFRQQLRSGDSA GESSFNGSLSAQNSKITVGDKSTVTMTGALSLINTDLIINKGATVTAQGKMYVDKAIE LAGTLTLTGTPTENNKYSPAIYMSDGYNMTEDGATLKAQNYAWVNGNIKSDKKASILF GVDQYKEDNLDKTTHTPLATGLLGGFDTSYTGGIDAPAASASMYNTLWRVNGQSALQS LKTRDSLLLFSNIENSGFHTVTVNTLDATNTAVIMRADLSQSVNQSDKLIVKNQLTGS NNSLSVDIQKVGNNNSGLNVDLITAPKGSNKEIFKASTQAIGFSNISPVISTKEDQEH TTWTLTGYKVAENTASSGAAKSYMSGNYKAFLTEVNNLNKRMGDLRDTNGEAGAWARI MSGAGSASGGYSDNYTHVQIGVDKKHELDGLDLFTGLTMTYTDSHASSNAFSGKTKSV GAGLYASAIFDSGAYIDLISKYVHHDNEYSATFAGLGTKDYSSHSLYVGAEAGYRYHV TEDSWIEPQAELVYGAVSGKRFDWQDRGMSVTMKDKDFNPLIGRTGVDVGKSFSGKDW KVTARAGLGYQFDLFANGETVLRDASGEKRIKGEKDGRILMNVGLNAEIRDNLRFGLE FEKSAFGKYNVDNAINANFRYSF" misc_feature 3060437..>3060544 /gene="sigA" /locus_tag="SF2968" /note="Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018" /db_xref="CDD:463773" misc_feature 3060635..3062374 /gene="sigA" /locus_tag="SF2968" /note="Immunoglobulin A1 protease; Region: Peptidase_S6; pfam02395" /db_xref="CDD:396804" misc_feature 3062705..3063385 /gene="sigA" /locus_tag="SF2968" /note="Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343" /db_xref="CDD:238653" misc_feature 3063047..3064291 /gene="sigA" /locus_tag="SF2968" /note="outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414" /db_xref="CDD:273608" gene 3064341..3065082 /locus_tag="SF2969" /pseudogene="unknown" /db_xref="GeneID:1025230" gene complement(3065325..3065672) /locus_tag="SF2970" /db_xref="GeneID:1026294" CDS complement(3065325..3065672) /locus_tag="SF2970" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708744.1" /db_xref="GeneID:1026294" /translation="MKTQSRHSELAKAFAYALNQWPALTYYANDGWVEIDNNIAENAL RAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYLRHVLGVIADWPVNRV SELLPWRIALPAE" misc_feature complement(3065400..>3065660) /locus_tag="SF2970" /note="IS66 family transposase; Region: transpos_IS66; NF033517" /db_xref="CDD:468053" gene 3065798..3066304 /locus_tag="SF2971" /db_xref="GeneID:1026282" CDS 3065798..3066304 /locus_tag="SF2971" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708745.1" /db_xref="GeneID:1026282" /translation="MVARGFTGSETIVRDAVAKWRKGWNPPVTTAVRLPSVSRVSRWL MPWRITRDEENYASRFISLMCEKEPELKIAQQLALEFYRILKTQNKSQLSSWFTRVHE SGSAEFRRVAAGMEADAAAICEAISSRWSNGVVEGHVNRLKKMLKRQMYGRAGFELLR QRVMSPLA" misc_feature <3065918..3066289 /locus_tag="SF2971" /note="Transposase [Mobilome: prophages, transposons]; Region: COG3464" /db_xref="CDD:442687" gene 3066391..3067305 /locus_tag="SF2972" /db_xref="GeneID:1026256" CDS 3066391..3067305 /locus_tag="SF2972" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708746.1" /db_xref="GeneID:1026256" /translation="MELSRATLGRWTGAVAELLEPLYDVLRQYVLMPGKVHADDIPVP VQEPGSGKTRTARLWVYVRDDRNAGSQMPPAVWFAYSPDRKGIHPQNHLAGYSGVLQA DAYGGYRALYESGRITEAACMAHARRKIHDVHARVPTDITTEALQRIGELYTIEAEVR GCSAEQRLAARKARAAPLMQSLYDRIQQQMKTLSRHSDTAKAFAYLLKQWKALNVYCS NGWVEIDNNIAENALRAVSLGRKNFLFFGSDHGGERGALLYSLIGTCKLNDVDPESYL RHVLGVIADWPVNRVSELLPWRIALPAE" misc_feature <3066394..3067230 /locus_tag="SF2972" /note="IS66 family transposase; Region: transpos_IS66; NF033517" /db_xref="CDD:468053" gene complement(3067737..3071855) /gene="pic" /locus_tag="SF2973" /db_xref="GeneID:1026598" CDS complement(3067737..3071855) /gene="pic" /locus_tag="SF2973" /codon_start=1 /transl_table=11 /product="serine protease" /protein_id="NP_708747.3" /db_xref="GeneID:1026598" /translation="MNKVYSLKYCPVTGGLIAVSELARRVIKKTCRRLTHILLAGIPA ICLCYSQISQAGIVRSDIAYQIYRDFAENKGLFVPGANDIPVYDKDGKLVGRLGKAPM ADFSSVSSNGVATLVSPQYIVSVKHNGGYRSVSFGNGKNTYSLVDRNNHPSIDFHAPR LNKLVTEVIPSAVTSEGTKANAYKYTERYTAFYRVGSGTQYTKDKDGNLVKVAGGYAF KTGGTTGVPLISDATIVSNPGQTYNPVNGPLPDYGAPGDSGSPLFAYDKQQKKWVIVA VLRAYAGINGATNWWNVIPTDYLNQVMQDDFDAPVDFVSGLGPLNWTYDKTSGTGTLS QGSKNWTMHGQKDNDLNAGKNLVFSGQNGAIILKDSVTQGAGYLEFKDSYTVSAESGK TWTGAGIITDKGTNVTWKVNGVAGDNLHKLGEGTLTINGTGVNPGGLKTGDGIVVLNQ QADTAGNIQAFSSVNLASGRPTVVLGDARQVNPDNISWGYRGGKLDLNGNAVTFTRLQ AADYGAVITNNAQQKSQLLLDLKAQDTNVSEPTIGNISPFGGTGTPGNLYSMILNSQT RFYILKSASYGNTLWGNSLNDPAQWEFVGMNKNKAVQTVKDRILAGRAKQPVIFHGQL TGNMDVAIPQVPGGRKVIFDGSVNLPEGTLSQDSGTLIFQGHPVIHASISGSAPVSLN QKDWENRQFTMKTLSLKDADFHLSRNASLNSDIKSDNSHITLGSDRAFVDKNDGTGNY VIPEEGTSVPDTVNDRSQYEGNITLNHNSALDIGSRFTGGIDAYDSAVSITSPDVLLT APGAFAGSSLTVHDGGHLTALNGLFSDGHIQAGKNGKITLSGTPVKDTANQYAPAVYL TDGYDLTGDNAALEITRGAHASGDIHASAASTVTIGSDTPAELASAETAASAFAGSLL EGYNAAFNGAITGGRADVSMHNALWTLGGDSAIHSLTVRNSRISSEGDRTFRTLTVNK LDATGSDFVLRTDLKNADKINVTEKATGSDNSLNVSFMNNPAQGQALNIPLVTAPAGT SAEMFKAGTRVTGFSRVTPTLHVDTSGGNTKWILDGFKAEADKAAAAKADSFMNAGYK NFMTEVNNLNKRMGDLRDTNGDAGAWARIMSGAGSADGGYSDNYTHVQVGFDKKHELD GVDLFTGVTMTYTDSSADSHAFSGKTKSVGGGLYASALFESGAYIDLIGKYIHHDNDY TGNFASLGTKHYNTHSWYAGAETGYRYHLTEDTFIEPQAELVYGAVSGKTFRWKDGDM DLSMKNRDFSPLVGRTGVELGKTFSGKDWSVTARAGTSWQFDLLNNGETVLRDASGEK RIKGEKDSRMLFNVGMNAQIKDNMRFGLEFEKSAFGKYNVDNAVNANFRYMF" misc_feature complement(<3071757..3071855) /gene="pic" /locus_tag="SF2973" /note="Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018" /db_xref="CDD:463773" misc_feature complement(3069534..3071690) /gene="pic" /locus_tag="SF2973" /note="Immunoglobulin A1 protease; Region: Peptidase_S6; pfam02395" /db_xref="CDD:396804" misc_feature complement(3068655..3069383) /gene="pic" /locus_tag="SF2973" /note="Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 1, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of Neisseria and Haemophilus IgA1 proteases; Region: PL1_Passenger_AT; cd01343" /db_xref="CDD:238653" misc_feature complement(3067740..3068966) /gene="pic" /locus_tag="SF2973" /note="outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414" /db_xref="CDD:273608" mobile_element complement(3071978..3072492) /note="partial" /mobile_element_type="insertion sequence:IS629" gene complement(3072020..3072466) /locus_tag="SF2974" /pseudogene="unknown" /db_xref="GeneID:1026594" gene complement(3072583..3074091) /locus_tag="SF2976" /db_xref="GeneID:1026107" CDS complement(3072583..3074091) /locus_tag="SF2976" /note="Code: L; COG: COG3344" /codon_start=1 /transl_table=11 /product="reverse transcriptase-like protein" /protein_id="NP_708749.1" /db_xref="GeneID:1026107" /translation="MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAH TPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALR DRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEG DLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVI SPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCR YADDFVLIVKGTKAQAEAIREECRGVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIR KRSRYGEMRVVSTIPQEKARNFAASLTALLSGNYSESKVDMAEQLNRKLKGWAMFYQF VDFKAKVFSYIDRVVFWKLAHWLARKYRTGIASLMRWWCKSPKPGQSKTWVLFGKTNH GKLSGEILYRLVGQGKKLFRWRLPEGNPYLRTETRNTYTSRFTEVAMAFASI" misc_feature complement(3072835..3074004) /locus_tag="SF2976" /note="group II intron reverse transcriptase/maturase; Region: group_II_RT_mat; TIGR04416" /db_xref="CDD:275209" misc_feature complement(order(3073105..3073110,3073252..3073257, 3073261..3073263,3073447..3073452,3073594..3073611)) /locus_tag="SF2976" /note="putative active site [active]" /db_xref="CDD:238828" misc_feature complement(order(3073255..3073257,3073450..3073452, 3073594..3073611)) /locus_tag="SF2976" /note="putative NTP binding site [chemical binding]; other site" /db_xref="CDD:238828" misc_feature complement(3073447..3073449) /locus_tag="SF2976" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:238828" gene 3074520..3074771 /locus_tag="SF2977" /db_xref="GeneID:1026021" CDS 3074520..3074771 /locus_tag="SF2977" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708751.1" /db_xref="GeneID:1026021" /translation="MFFSLSVLNLEDHLGLVISPQSPLSAGYITLRACRRSLPLRFST VTPGGIVGFLIVSYRFNIPDRLAVHLSIHARPELRAHRK" mobile_element complement(3074763..3075553) /note="partial" /mobile_element_type="insertion sequence:IS629" gene complement(3075173..3075499) /locus_tag="SF2979" /db_xref="GeneID:1026036" CDS complement(3075173..3075499) /locus_tag="SF2979" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_708753.1" /db_xref="GeneID:1026036" /translation="MTKNTRFSPEVRQRAVRMVLESQSEYDSQWATICSIAPKIGCTP ETLRVWVRQHERDTGGGDGGLTTAERQRLKELERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature complement(3075209..3075496) /locus_tag="SF2979" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(3075782..3076207) /locus_tag="SF2980" /db_xref="GeneID:1026544" CDS complement(3075782..3076207) /locus_tag="SF2980" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708754.1" /db_xref="GeneID:1026544" /translation="MNGIKTGLGITPGEHIISADSALSRNIRQCFCLSCHGRLILQTD AQGAWFEHDLHALSEQQKADCVVLNPEKSHPYIEDMAMFLSPLPVVLEWHCVMCEQFF HGKKFCEACGTGIYCRAVCTKSVYSYQPDLFEDCGGAST" misc_feature complement(3075848..3076165) /locus_tag="SF2980" /note="Probable zinc-ribbon; Region: zinc_ribbon_11; pfam11682" /db_xref="CDD:288524" gene complement(3076204..3076587) /locus_tag="SF2981" /db_xref="GeneID:1026599" CDS complement(3076204..3076587) /locus_tag="SF2981" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708755.1" /db_xref="GeneID:1026599" /translation="MYAKSFLALDGNGRLTGARTAQTAPYDSYTCHLCGSALRYHPQY DTERPWFEHADEGLTEHGHECPYVRPERREIRLIKRLQQFVPDTLPVVRKASWHCRQC HHDYYGEQYCTHCQTGRFSEEGGAE" misc_feature complement(3076225..3076578) /locus_tag="SF2981" /note="Probable zinc-ribbon; Region: zinc_ribbon_11; pfam11682" /db_xref="CDD:288524" gene complement(3076960..3077559) /locus_tag="SF2982" /db_xref="GeneID:1026568" CDS complement(3076960..3077559) /locus_tag="SF2982" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708756.1" /db_xref="GeneID:1026568" /translation="MQTYNTNPAYEMAPQLLEHFNQHLDSLFGVYSKLLPFRMDFAYR KNTLSYRCACRYAMCAEMLQLINEVGEKLVGYAWVMEYTERKGLHIHFVGYLNGQSHR SSYLVSRLMGDIWRRVTEGNGYYHWCRFNKNYPVNINHVIHYSDHKAVNDLRYAISYL AKREQKECGIILKCSGLPEKSNRGRPRLDSPLPGICALV" misc_feature complement(3077062..>3077355) /locus_tag="SF2982" /note="Inovirus Gp2; Region: Inovirus_Gp2; pfam11726" /db_xref="CDD:432027" mobile_element complement(3077704..3079032) /mobile_element_type="insertion sequence:iso-IS10R" gene complement(3077717..3078925) /locus_tag="SF2983" /db_xref="GeneID:1026549" CDS complement(3077717..3078925) /locus_tag="SF2983" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_708757.1" /db_xref="GeneID:1026549" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature complement(3077756..3078811) /locus_tag="SF2983" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" mobile_element 3079523..3080854 /mobile_element_type="insertion sequence:IS2" gene 3079569..3079979 /locus_tag="SF2984" /db_xref="GeneID:1026607" CDS 3079569..3079979 /locus_tag="SF2984" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_708758.3" /db_xref="GeneID:1026607" /translation="MIVLILVFRLVIGVQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 3079614..3079976 /locus_tag="SF2984" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 3080055..3080843 /locus_tag="SF2985" /db_xref="GeneID:1026829" CDS 3080055..3080843 /locus_tag="SF2985" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion element IS2 transposase InsD" /protein_id="NP_708759.1" /db_xref="GeneID:1026829" /translation="MAPRSRHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDG MPAINAKRVYRLMRQNALLLERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNG ERLRVTFALDCCDREALHWAVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDN GSCYRANETRQFARMLGLEPKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAA KNLAEAFEHYNEWHPHSALGYRSPREYLRQRACNGLSDNRCLEI" misc_feature 3080055..3080840 /locus_tag="SF2985" /note="insertion element IS2 transposase InsD; Provisional; Region: PRK14702" /db_xref="CDD:237792" gene 3081530..3082321 /locus_tag="SF2986" /db_xref="GeneID:1026264" CDS 3081530..3082321 /locus_tag="SF2986" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708760.1" /db_xref="GeneID:1026264" /translation="MTTRITFSMTSDETLRIVDEYCHTHKLSRSKVINALLSATAPVL NDINCYYQLAGELQSRLLNGVYQRDLPRKRNVVSAEKYCLEIWENKLFTRRILEFDSS NGVLYALKHKRHYRRDKMIGRVESRCIKDICEYQMQLSGEKTKYACFIYIERTIYNHD NPSDKIPVKAAVGNAVILLAKDVIYNEYFFDLRQSFFVSVTDLMVSGAKGIPETQTYP DVYCWIPLFSINSGVLITPVYKIDPLKPVTVKKPDKITVVCNYRE" gene 3082707..3082913 /locus_tag="SF2987" /db_xref="GeneID:1026498" CDS 3082707..3082913 /locus_tag="SF2987" /note="Code: K; COG: COG3311" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708761.1" /db_xref="GeneID:1026498" /translation="MNTPVSLMDDQMVDMSFITQLTGLTDKWFYKLIKHGAFPPPIKL GRSSRWLKSEVEAWLQARIAQSRP" misc_feature 3082722..3082907 /locus_tag="SF2987" /note="DNA-binding transcriptional regulator AlpA [Transcription, Mobilome: prophages, transposons]; Region: AlpA; COG3311" /db_xref="CDD:442540" gene 3082999..3083571 /locus_tag="SF2988" /db_xref="GeneID:1026518" CDS 3082999..3083571 /locus_tag="SF2988" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708762.1" /db_xref="GeneID:1026518" /translation="MQQLENRCDLLLIQHQKWMTSVTRLIVAHGMGSPHLHGYHRLTL AHFFLPEKGSVISVAPQGLYQVVNPGTPPFIPAIQEGLMTSIQTHEIMLLTHFNLGGV LLSELHRLGENRLANRLNSLLRRFDDRDLYHTLIWLCWYDLMCAHSMQPWTEELKHKS HAELENWAVARKREKRELELMIDEYLLYAC" gene 3085140..3086159 /locus_tag="SF2989" /db_xref="GeneID:1024416" CDS 3085140..3086159 /locus_tag="SF2989" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708763.1" /db_xref="GeneID:1024416" /translation="MNNEQMLIKCRDPRKCRFYAEYLNHKYPNEFPHFAPDNPQNCIR NVNLFLKEKYCNVSPPPFGTFGTTEEEALNNEINELEIIAGQAILPEESFLWLKTDEL ATFFTWTTIYLSKEDHTKFPKINHNSSGIKNGIEVRKIRTVTDETLNTYKKSNLPDNP SSHNERIKVIISYFDSCHSLINKNAKSIYLEELRQAWLKKKSACQKFKWLLPDDDEMC QWFWTRLKQKQDEKHPVHNPVTRWFIPSSTKEYYLASLVAFALWKEAPDTIELFRTRI NHAWHQKKQKDKYRSDGKKAINIHIRSNVKEMLDELRTVYGLRTGEFFEMLITEKYLE HKRRK" gene 3086269..3087141 /gene="sap" /locus_tag="SF2990" /db_xref="GeneID:1026540" CDS 3086269..3087141 /gene="sap" /locus_tag="SF2990" /note="Code: R; COG: COG3596" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708764.1" /db_xref="GeneID:1026540" /translation="MNPSDAIEAIEKPLSSLPYSLSRHILEHLRKLTSHEPVIGIMGK SGAGKSSLCNALFQGEVTPVSDVHAGTREVQRFRLSGHGHSMVITDLPEVGESRDRDA EYEALYRDILPELDLVLWLIKADDRALSVDEYFWRHILQCGHQQVLFVVTQADKTEPC HEWDMAGIQPSPAQEQNIREKTEAVFRLFRPVHPVVAVSARTGWELDTLVSALMTALP DHAASPLMTRLQDELRTESVRSQAREQFTGAVDRIFDTAESVCVASVVRTALRAVRDT VVSVARAVWNWIFF" misc_feature 3086269..3087111 /gene="sap" /locus_tag="SF2990" /note="Predicted GTPase [General function prediction only]; Region: YeeP; COG3596" /db_xref="CDD:442815" gene 3087469..3090597 /locus_tag="SF2991" /db_xref="GeneID:1026602" CDS 3087469..3090597 /locus_tag="SF2991" /codon_start=1 /transl_table=11 /product="outer membrane fluffing protein" /protein_id="NP_708765.1" /db_xref="GeneID:1026602" /translation="MLMKRHLNTCYRLVWNHITGAFVVASELARAQGKRGGVAVALSL AAVTSLPVLAADIVVHPGETVNGGTLVNHDNQFVSGTADGVTVSTGLELGPDSDENTG GQWIKAGGTGRNTTVTANGRQIVQAGGTASDTVIRDGGGQSLNGLAVNTTLDNRGEQW VHGGGKAAGTIINQDGYQTIKHGGLATGTIVNTGAEGGPESENVSSGQMVGGTAESTT INKNGRQVIWSSGMARDTLIYAGGDQTVHGEAHNTRLEGGNQYVHNGGTATETLINRD GWQVIKEGGTAAHTTINQKGKLQVNAGGKASDVTQNTGGALVTSTAATVTGTNRLGAF SVVEGKADNVVLENGGRLDVLTGHTATNTRVDDGGTLDVRNGGTATTVSMGNGGVLLA DSGAAVSGTRSDGKAFSIGGGQADALMLEKGSSFTLNAGDTATDTTVNGGLFTARGGT LAGTTTLNNGAILTLSGKTVNNDTLTIREGDALLQGGALTGNGSVEKSGSGTLTVSNT TLTQKAVNLNEGTLTLNDSTVTTDVIAQRGTALKLTGSTVLNGAIDPTNVTLASGATW NIPDNATVQSVVDDLSHAGQIHFTSTRTGKFVPATLKVKNLNGQNGTISLRVRPDMAQ NNADRLVIDGGRATGKTILNLVNAGNSASGLATSGKGIQVVEAINGATTEEGAFIQGN KLQAGAFNYSLNRDSDESWYLRSENAYRAEVPLYASMLTQAMDYDRILAGSRSHQTGV SGENNSVRLSIQGGHLGHDNNGGIARGATPESSGSYGFVRLEGDLLRTEVAGMSVTAG VYGAAGHSSVDVKDDDGSRAGTVRDDAGSLGGYLNLIHNASGLWADIVAQGTRHSMKA SSDNNDFRVRGWGWLGSLETGLPFSITDNLMLEPQLQYTWQGLSLDDGQDNASYVKFG HGSAQHVRAGFRLGSHHDMNFGKGTSSRDTLRGSAKHSVRELPVNWWVQPSVIRTFSS RGDMSMGTAAAGSNMTFSPSQNGTSLDLQAGLEARVRENITLGVQASYAHSINGSSAE GYNSQATLNVTF" misc_feature 3087475..3090594 /locus_tag="SF2991" /note="Ag43/Cah family autotransporter adhesin; Region: auto_Ag43; NF033177" /db_xref="CDD:467980" misc_feature 3089026..3089598 /locus_tag="SF2991" /note="Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria. This subgroup includes the passenger domains of the nonprotease autotransporters, Ag43; Region: PL2_Passenger_AT; cd01344" /db_xref="CDD:238654" gene 3090718..3093234 /locus_tag="SF2992" /db_xref="GeneID:1026597" CDS 3090718..3093234 /locus_tag="SF2992" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708766.2" /db_xref="GeneID:1026597" /translation="MLQIVGALILLIAGFAILRLLFRALTSTASALAGFILLCLFGPA LLAGYITERITRLFHIRWLAGVFLTIAGMIISFMWGLDGKHIALEAHTFDSVKFILTT ALAAGLLALPVQIRTIQQNGLTPEDISKEINGYYCCFYTAFFLMACSAYAPLIALQFD ISPSLMWWGGLLYWLAALVTLLWAASQIQALKRLTSAISQTLEEQPVLNSKSWLSSLQ NDYSLPETLTERIWLTLISQRISRGELREFELADGNWLLNNAWYERNMAGFNEQLKEN LSFTPDELKTLFRNRLNLSPEANDDFLDRCLDGGDWYPFSEGRRFVSFHHVDELRICA SCGLTEVHHAPENHKPAPEWYCSSLCHETETLCQDIYERSYTGFISDATANGLILMKL PETWSTNEKMFASGGQGHGFAAERGNHIVDRVRLKNARILGDNNARNGADRLVSGTEI QTKYCSTAARSVGAAFDGQNGQYRYMGNHGPMQLEVPRDQYAGAVETMKNKIREGKVP GVTDPAEASRLIRRGHLTYTQARNITRFGTIESVTYDIAEGSVVSLAAGGISFALTAS VFWLSTGDRDAALQTAAVQAGKTFTRTLAVYVTTQQLHRLTVVQGMLKHIDFSTASPT VRQALQKGTGAGNISALNKVMKGTLVTSLALVAVTTSPDMIKMLRGRISGAQFIRNLA VASSGVAGGAVGSVAGGILFSPLGPFGALTGRVVGGVLGGMIASAVSGKIAGALVEED RVKILAMIQEQVTWLAGSFLLTGHEIENLNANLARVIDQNALEIIFAAGIQQRAATNM LIKPLVVSIIRQRPVMEYDASHLGKMVNRLEEAFPPELPA" gene 3093310..3093765 /locus_tag="SF2993" /db_xref="GeneID:1026551" CDS 3093310..3093765 /locus_tag="SF2993" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708767.1" /db_xref="GeneID:1026551" /translation="MIHLFKTCMITAFILGLTWSAPLRAQDQRYISIRNTDTIWLPGN ICAYQFRLDNGGNGEGFGPLTITLQLKDKYGQTLVTRKMETEAFGDSNATRTTDAFLE TECVENVATTEIIKATEESNGHRVSLPLSVFDPQDYHPLLITVSGKNVN" misc_feature 3093400..3093717 /locus_tag="SF2993" /note="interleukin receptor mimic protein A; Region: IrmA; pfam18673" /db_xref="CDD:436657" gene complement(3093884..3094072) /locus_tag="SF2993a" /db_xref="GeneID:16608356" CDS complement(3093884..3094072) /locus_tag="SF2993a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439280.1" /db_xref="GeneID:16608356" /translation="MSEKPSTGEPRIKLFSGISFRVPAASASLTFRVADNPTEMHSRV ILDKHIAVSGYDSNRLPV" gene 3094176..3094994 /locus_tag="SF2994" /db_xref="GeneID:1026630" CDS 3094176..3094994 /locus_tag="SF2994" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708768.1" /db_xref="GeneID:1026630" /translation="MQLVSRFGYANQIRRDRPLTHEELMHHVPGIFGEEKHTSRSQNY TYIPTITVLESLQREGFQPFFACQTRVRDPGRRGYTKHMLRLRRAGEINGEHVPEIIL LNSHDGTSSYQMLPGYFRFVCQNGCVCGQSLGEVRVPHRGNVVEKVIEGAYEVVGVFD RIEEKRDAMQSLVLPPPARQALAQAALTYRYGDEHQPVTTADILTPRRREDYGKDLWS TYQTIQENMLKGGISGRSAKGKRIHTRAIHNIDTDIKLNRALWVMAETLLESLR" misc_feature 3094281..3094958 /locus_tag="SF2994" /note="Domain of unknown function (DUF932); Region: DUF932; pfam06067" /db_xref="CDD:461817" gene 3095336..3095809 /locus_tag="SF2995" /db_xref="GeneID:1026555" CDS 3095336..3095809 /locus_tag="SF2995" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708769.2" /db_xref="GeneID:1026555" /translation="MKTLSQNTTSSACAPETDLQQLVATLVPDEQRISFWPQHFGLIP QWVTLEPRVFGWMDRLCEDYCGGIWNLYTLNNGGAFMAPEPDDDDDETWVLFNAMNGN RAEMSPEAAGIAACLMTYSHHACRTECYAMTVHYYRLRDYALQHPECSAIMRIID" misc_feature 3095519..3095806 /locus_tag="SF2995" /note="Antirestriction protein; Region: Antirestrict; pfam03230" /db_xref="CDD:427206" gene 3095810..3096301 /gene="yeeS" /locus_tag="SF2996" /db_xref="GeneID:1026615" CDS 3095810..3096301 /gene="yeeS" /locus_tag="SF2996" /note="Code: L; COG: COG2003" /codon_start=1 /transl_table=11 /product="RADC family DNA repair protein" /protein_id="NP_708770.1" /db_xref="GeneID:1026615" /translation="MVAGTMQQLSFLPGEMTTRERSLILRALKTLDRHLHEPGVAFTS THAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGTINRTEVHPREVIKRALY HNAAAVVLAHNHPSGEVPPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEH GLL" misc_feature <3095906..3096298 /gene="yeeS" /locus_tag="SF2996" /note="DNA repair protein RadC; Region: PRK00024" /db_xref="CDD:178801" gene 3096388..3096609 /gene="yeeT" /locus_tag="SF2997" /db_xref="GeneID:1026552" CDS 3096388..3096609 /gene="yeeT" /locus_tag="SF2997" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708771.1" /db_xref="GeneID:1026552" /translation="MKIITRGEAMRIHRQHPASRLFPFCTGKYRWHGSTDTYTGREVQ DIPGVLAVFAERRKDSFGPYVRLMSVTLN" misc_feature 3096388..3096582 /gene="yeeT" /locus_tag="SF2997" /note="Protein of unknown function (DUF987); Region: DUF987; pfam06174" /db_xref="CDD:368775" gene 3096689..3097066 /gene="yeeU" /locus_tag="SF2998" /db_xref="GeneID:1026538" CDS 3096689..3097066 /gene="yeeU" /locus_tag="SF2998" /codon_start=1 /transl_table=11 /product="structural protein" /protein_id="NP_708772.1" /db_xref="GeneID:1026538" /translation="MSDTLPGTTPPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYL ADRAGIRGRFSDVDAYHLDQAFPLLMKQLELMLTGGELNPRHQHTVTLYAKGLTCEAD TLGSCGYVYLAVYPTPAAPATTV" misc_feature 3096740..3097042 /gene="yeeU" /locus_tag="SF2998" /note="type IV, cytoskeleton bundling-enhancing factor A; Region: CbeA_antitoxin; pfam06154" /db_xref="CDD:399275" gene 3097113..3097490 /gene="yeeV" /locus_tag="SF2999" /db_xref="GeneID:1026503" CDS 3097113..3097490 /gene="yeeV" /locus_tag="SF2999" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708773.1" /db_xref="GeneID:1026503" /translation="MNTLPDTHVREASGCPSPITIWQTLLTRLLDQHYGLTLNDTPFA DERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGFSAGAPSQLINSIDILRARRATG LMTRDNYRTVNNITRGKHPEAKQ" misc_feature 3097113..3097436 /gene="yeeV" /locus_tag="SF2999" /note="CbtA_toxin of type IV toxin-antitoxin system; Region: CbtA_toxin; pfam06755" /db_xref="CDD:369065" gene 3097487..3097975 /gene="yeeW" /locus_tag="SF3000" /db_xref="GeneID:1026500" CDS 3097487..3097975 /gene="yeeW" /locus_tag="SF3000" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708774.1" /db_xref="GeneID:1026500" /translation="MKLALTLEADSVNVQALNMGRIVVDVDGVNLSELINKVSENGYS LRVVDKSDQHATSTPPPLTTLTCIRCSTAHITETDNAWLYSLSHQTNDDGETEWIHFT GSGYLLRTDAWSYPVLRLKRLGLSRTFRRLVVTLTRRYGVSLIHLDAGAECLPGFPTF DW" misc_feature 3097490..3097972 /gene="yeeW" /locus_tag="SF3000" /note="Family of unknown function (DUF5983); Region: DUF5983; pfam19419" /db_xref="CDD:437251" gene 3097995..3098192 /locus_tag="SF3001" /db_xref="GeneID:1026360" CDS 3097995..3098192 /locus_tag="SF3001" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708775.1" /db_xref="GeneID:1026360" /translation="MKLLTTETALDILIAWLQDNIDCESGIIFDNDEDKTDSAALLPC IEQAREDIRTLRQLQFLQQNR" gene 3098277..3099119 /locus_tag="SF3002" /db_xref="GeneID:1026405" CDS 3098277..3099119 /locus_tag="SF3002" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708776.1" /db_xref="GeneID:1026405" /translation="MSEITASRPEVVNGHTDVICSTSIRHILAVRKSTLLQIDTLIRQ LAEVSAMTESIRGKTALDWAMKQDFRCGCWLMEKPETAMKAITRNLDRELWRDLMQRS GMLSLMDAQTRDTWYRSLEYDNFPEISEANILSTFEQLHQNKDEVFERGVINVFKGLS WDYKTNSPCKFGSKIIVNNLVRWDRWGFHLITGQQTDRLVDLERMLHLFSGKPIPDNR ENITIRLDGHIQSVQGKERYEDEMFIIKYFKKGSAHITFKRLELIDRINDIIARYFPS VLSA" misc_feature 3098541..3099098 /locus_tag="SF3002" /note="Domain of unknown function (DUF4942); Region: DUF4942; pfam13708" /db_xref="CDD:433419" mobile_element 3099615..3100943 /mobile_element_type="insertion sequence:iso-IS10R" gene 3099722..3100930 /locus_tag="SF3003" /db_xref="GeneID:1026833" CDS 3099722..3100930 /locus_tag="SF3003" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_708777.1" /db_xref="GeneID:1026833" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLAALASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature 3099836..3100891 /locus_tag="SF3003" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene 3101189..3101479 /locus_tag="SF3004" /db_xref="GeneID:1026592" CDS 3101189..3101479 /locus_tag="SF3004" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708778.1" /db_xref="GeneID:1026592" /translation="MDATGNTTVTCLSHKMKYKEVACGKQRMHWLALQFVDENNNPVS GLNVQLEYHPRAMAAELALWARGRHTQFDPTPPPPPVGVTDSQGLVRFDDLY" mobile_element 3101817..3103074 /mobile_element_type="insertion sequence:IS3" gene 3101873..3102181 /locus_tag="SF3005" /db_xref="GeneID:1026617" CDS 3101873..3102181 /locus_tag="SF3005" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence IS3 transposase InsE" /protein_id="NP_708779.1" /db_xref="GeneID:1026617" /translation="MTHMTKTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSL YESQLYNWRSKQQNQQTSSERELEMSTEIARLKRQLAERDEELAILQKAATYFAKRLK " misc_feature 3101906..3102163 /locus_tag="SF3005" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 3102178..3103044 /locus_tag="SF3006" /db_xref="GeneID:1026623" CDS 3102178..3103044 /locus_tag="SF3006" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence IS3A transposase InsF" /protein_id="NP_708780.1" /db_xref="GeneID:1026623" /translation="MKYVFIEKHQAEFSIKAMCRVLRVARSGWYTWCQRRTRISTRQQ FRQHCDSVVLAAFTRSKQRYGAPRLTDELRAQGYPFNVKTVAASLRRQGLRAKASRKF SPVSYRAHGLPVSENLLEQDFYASGPNQKWPGDITYLRTDEGWLYLAVVIDLWSRAVI GWSMSPRMTAQLPCDALQMALWRRKRPRNVIVHTDRGGQYCSADYQAQLKRHNLRGSM SAKGCCYDNACVESFFHSLKVECIHGEHFISREIMRATVFNYIECDYNRWRRHSWCGG LSPEQFENQNLA" misc_feature <3102178..3103026 /locus_tag="SF3006" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(3103148..3103615) /locus_tag="SF3007" /db_xref="GeneID:1026608" CDS complement(3103148..3103615) /locus_tag="SF3007" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708781.1" /db_xref="GeneID:1026608" /translation="MYGTWSLSMAAIWLLRVDLLFVALFLIFISWGDILLRIISHRYL LVLTVLIFLALILQHQKPNLVAAGSVLLVGFFLFSAGIIGGGDVKLLTVLSLAIDEHE LANFLVAMTFCGALVVLAGLLFFRKSIRENGVPYAVPISLAFLLTYPVFPLFC" misc_feature complement(3103154..3103561) /locus_tag="SF3007" /note="Flp pilus assembly protein, peptidase CpaA [Posttranslational modification, protein turnover, chaperones, Signal transduction mechanisms]; Region: CpaA; COG4960" /db_xref="CDD:443986" gene complement(3103681..3103920) /locus_tag="SF3008" /db_xref="GeneID:1025238" CDS complement(3103681..3103920) /locus_tag="SF3008" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708782.1" /db_xref="GeneID:1025238" /translation="MNTFITKYYGKTKQCFARFAKDERGVTAIEYALIGVAMATLLAF IFGDQNSGFLGAIKDAFDAIAAAIQQVTISGTSNP" misc_feature complement(3103750..3103884) /locus_tag="SF3008" /note="Flp pilus assembly protein, pilin Flp [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; Region: Flp; COG3847" /db_xref="CDD:443057" gene complement(3104055..3104660) /locus_tag="SF3009" /db_xref="GeneID:1026616" CDS complement(3104055..3104660) /locus_tag="SF3009" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708783.1" /db_xref="GeneID:1026616" /translation="MSDDRFYFSLGQGVKFYPASRRITTSTGNVINLSENGYRFLLLL LQGESDKQHIINEVWREQKGSVSDSSYYGQIYMLRKALDVAGLSSSLIKTIPRKGVRY LGKVEKHVCENERDSDEDSSSYTNDSEAREVNTDANIPENDNSQEFSTEELLPIKHTD KNIEWYRTKQWSVFISVLTVLAVCWLTTLVFLVLLFLNQDK" misc_feature complement(3104340..3104624) /locus_tag="SF3009" /note="DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; Region: CadC1; COG3710" /db_xref="CDD:442924" mobile_element complement(3104760..3105528) /mobile_element_type="insertion sequence:IS1" gene complement(3105198..3105473) /gene="insA" /locus_tag="SF3011" /db_xref="GeneID:1026619" CDS complement(3105198..3105473) /gene="insA" /locus_tag="SF3011" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708785.1" /db_xref="GeneID:1026619" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3105201..3105452) /gene="insA" /locus_tag="SF3011" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" mobile_element complement(3105529..3106297) /mobile_element_type="insertion sequence:IS1" gene complement(3105967..3106242) /gene="insA" /locus_tag="SF3013" /db_xref="GeneID:1026603" CDS complement(3105967..3106242) /gene="insA" /locus_tag="SF3013" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708787.1" /db_xref="GeneID:1026603" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3105970..3106221) /gene="insA" /locus_tag="SF3013" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(3107699..3109287) /gene="yghK" /locus_tag="SF3014" /pseudogene="unknown" /db_xref="GeneID:1026600" gene complement(3109642..3111813) /gene="glcB" /locus_tag="SF3015" /db_xref="GeneID:1026622" CDS complement(3109642..3111813) /gene="glcB" /locus_tag="SF3015" /note="Code: C; COG: COG2225" /codon_start=1 /transl_table=11 /product="malate synthase G" /protein_id="NP_708789.1" /db_xref="GeneID:1026622" /translation="MSQTITQGRLRIDANFKRFVDGEVLPGVELDAAAFWHNVDEIVH DLAPENRQLLAERDRIQAALDEWHRSNPGPVKDKAAYKSFLRELGYLVPQPERVTVET TGIDSEITSQAGPQLVVPAMNARYALNAANARWGSLYDALYGSDIIPQEGAMVSGYDP QRGEQVIAWVRRFLDESLPLENGSYQDVVAFKVVDKQLRIQLKNGKETTLRTPAQFVG YRGDAAAPTCILLKNNGLHIELQIDANGRIGKDDPAHINDVIVEAAISTILDCEDSVA AVDAEDKILLYRNLLGLMQGTLQEKMEKNGRQIVRKLNDDRQYTAADGSEISLHGRSL LFIRNVGHLMTIPVIWDSEGNEIPEGILDGVMTGAIALYDLKVQKNSRTGSVYIVKPK MHGPQEVAFANKLFTRIETMLGMAPNTLKMGIMDEERRTSLNLRSCIAQARNRVAFIN TGFLDRTGDEMHSVMEAGPMLRKNQMKSTPWIKAYERNNVLSGLFCGLRGKAQIGKGM WAMPDLMADMYSQKGDQLRAGANTAWVPSPTAATLHALHYHHTNVQSVQANIAQTEFS AEFEPLLDDLLTIPVAENANWSAQEIQQELDNNVQGILGYVVRWVEQGIGCSKVPDIH NVALMEDRATLRISSQHIANWLRHGILTKEQVQASLENMAKVVDQQNAGDPAYRPMAG NFANSCAFKAASDLIFLGVKQPNGYTEPLLHAWRLREKESH" misc_feature complement(3109645..3111813) /gene="glcB" /locus_tag="SF3015" /note="malate synthase G; Provisional; Region: PRK02999" /db_xref="CDD:235097" misc_feature complement(order(3109921..3109923,3110449..3110451, 3110455..3110457,3110533..3110535,3110800..3110802)) /gene="glcB" /locus_tag="SF3015" /note="active site" /db_xref="CDD:238370" gene complement(3111835..3112239) /gene="glcG" /locus_tag="SF3016" /db_xref="GeneID:1026625" CDS complement(3111835..3112239) /gene="glcG" /locus_tag="SF3016" /note="Code: S; COG: COG3193" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708790.2" /db_xref="GeneID:1026625" /translation="MKTKVILSQQMASAIIAAGQEEAQKNNWSVSIAVADDGGHLLAL SRMDDCAPIAAYISQEKARTAALGRRETKGYEEMVNNGRTAFVTAPLLTSLEGGVPVV VDGQIIGAVGVSGLTGAQDAQVAKVAAAVLAK" misc_feature complement(3111838..3112239) /gene="glcG" /locus_tag="SF3016" /note="hypothetical protein; Provisional; Region: PRK09732" /db_xref="CDD:170072" gene complement(3112244..3113463) /gene="glcF" /locus_tag="SF3017" /pseudo /db_xref="GeneID:1026609" misc_feature complement(3112244..3113463) /gene="glcF" /locus_tag="SF3017" /note="Similar to Escherichia coli K12 glycolate oxidase iron-sulfur subunit gi: 1789350 (762 aa). BLAST with identity of 98% in 760 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(3113474..3114526) /locus_tag="SF3017a" /db_xref="GeneID:16608357" CDS complement(3113474..3114526) /locus_tag="SF3017a" /codon_start=1 /transl_table=11 /product="glycolate oxidase FAD binding subunit" /protein_id="YP_008439281.1" /db_xref="GeneID:16608357" /translation="MLRECDYSQALLEQVNQAISDKTPLVIQGSNSKAFLGRPVTGQT LDVRCHRGIVNYDPTELVITARAGTPLVAIEAALESAGQMLPCEPPHYGEEATWGGMV ACGLAGPRRPWSGSVRDFVLGTRIITGTGKHLRFGGEVMKNVAGYDLSRLMAGSYGCL GVLTEISMKVLPRPRASLSLRREISLQEAMSEIAEWQLQPLPISGLCYFDNALWIRLE GGEGSVKAARELLGGEEVVGQFWQQLREQQLPFFSLPGTLWRISLPSDAPMMDLPGEQ LIDWGGALRWLKSTADDNQIHRIARNAGGHATRFSAGDGGFAPLSAPLFRYHQQLKQQ LDPCGVFNPGRMYAEL" misc_feature complement(3113477..3114511) /locus_tag="SF3017a" /note="glycolate oxidase FAD binding subunit; Provisional; Region: glcE; PRK11282" /db_xref="CDD:236893" gene complement(3114533..3116025) /gene="glcD" /locus_tag="SF3018" /pseudo /db_xref="GeneID:1026620" misc_feature complement(3114533..3116025) /gene="glcD" /locus_tag="SF3018" /note="Similar to Escherichia coli K12 glycolate oxidase subunit D gi: 1789351 (500 aa). BLAST with identity of 98% in 497 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 3116276..3117046 /gene="glcC" /locus_tag="SF3019" /db_xref="GeneID:1026618" CDS 3116276..3117046 /gene="glcC" /locus_tag="SF3019" /note="Code: K; COG: COG2186" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator GlcC" /protein_id="NP_708791.2" /db_xref="GeneID:1026618" /translation="MKDERRPICEVVAESIERLIIDGVLKVGQPLPSERRLCEKLGFS SSALREGLTVLRGRGIIETAQGRDSHVARLNREQDTSPLIHLFSTQPRTLYDLLDVRA LLEGESARLAATLGTQADFVVITRCYEKMLAASENHKEISLIEHAQLDHAFHLAICQA SHNQVLVFTLQSLTDLMFNSVFASVNNLYHRPQQKKQIDRQHARIYNAVLQRLPHVAQ RAARDHVRTVKKNLHDIELEGHHLIRSAVPLEMNKVGM" misc_feature 3116276..3117025 /gene="glcC" /locus_tag="SF3019" /note="DNA-binding transcriptional regulator GlcC; Provisional; Region: PRK09990" /db_xref="CDD:182186" gene complement(3117170..3118271) /locus_tag="SF3020" /pseudo /db_xref="GeneID:1026611" misc_feature complement(3117170..3118271) /locus_tag="SF3020" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789354 (391 aa). BLAST with identity of 99% in 367 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene 3118715..3120403 /locus_tag="SF3021" /db_xref="GeneID:1026649" CDS 3118715..3120403 /locus_tag="SF3021" /note="Code: IQ; COG: COG0318" /codon_start=1 /transl_table=11 /product="acyl-CoA synthetase" /protein_id="NP_708792.2" /db_xref="GeneID:1026649" /translation="MRYADFPTLVDALDYAALSRAGMNFYDRRCQLEDQLEYQTLKTR AEAGAKRLLSLNLKKGERVALIAETSSGFVEAFFACQYAGLVAVPLAIPMGVGQRDSW SAKLQGLLASCQPAAIITGDEWLPLVNAATHNNPELHVLSHAWFKALPEADVALQRPV PNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGIKLRPSDRCVSWQPFYHDMG LVGFLLPPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNE KDLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNKTFMPCYGLAENALAVSF SDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRNEAGMPV AERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYLLDGYLYVTGRIKDLI IIRGRNIWPQDIEYIAEQEPEIHSGDAIAFVTAQEKIILQIQCRISDEERRGQLIHAL AARIQSEFGVTAAIDLLPPHSIPRTSSGKPARAEAKKRYQKAYAASLNVQESLA" misc_feature 3118715..3120400 /locus_tag="SF3021" /note="fatty acyl-AMP ligase; Region: PRK09192" /db_xref="CDD:236403" gene 3120418..3121314 /locus_tag="SF3022" /db_xref="GeneID:1026639" CDS 3120418..3121314 /locus_tag="SF3022" /note="Code: MG; COG: COG0702" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708793.1" /db_xref="GeneID:1026639" /translation="MTGATGFIGKYIIDNLLARGFHVRALTRTARAHVNDNLTWVRGS LEDTHSLSELVAGASVVVHCAGQVRGHKEEIFTRCNVDGSLRLMQAAKESGFCQRFLF ISSLAARHPELSWYAKSKYVAEQRLAAMADEITLGVFRPTAVYGPGDKELKPLFDWML RGLLPRLGAPDTQLSFLHVTDFAQAVGQWLSAETVQTQTYELCDGVAGGYDWQRVRQL AAKARCGSVRMVDIPLPVLTGLADISTALSRLAGKEPMLTRSKIRELTHADWSASNNR ISEDINWFPGISLEHALRNGLF" misc_feature 3120421..3121299 /locus_tag="SF3022" /note="Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]; Region: WcaG; COG0451" /db_xref="CDD:440220" gene 3121347..3121595 /locus_tag="SF3023" /db_xref="GeneID:1026612" CDS 3121347..3121595 /locus_tag="SF3023" /note="Code: IQ; COG: COG0236" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708794.1" /db_xref="GeneID:1026612" /translation="MVNREIVMDYILSCLQDLVENGVEIKPDSDLVNDLGLESIKVMD LLMMLEDRFDISIPINILLDVKTPAQLMETLLPWLENK" misc_feature 3121353..3121571 /locus_tag="SF3023" /note="Acyl carrier protein [Lipid transport and metabolism]; Region: AcpP; COG0236" /db_xref="CDD:440006" gene 3121595..3122766 /locus_tag="SF3025" /pseudogene="unknown" /db_xref="GeneID:1026614" gene 3121595..3121945 /locus_tag="SF3024" /db_xref="GeneID:1026605" CDS 3121595..3121945 /locus_tag="SF3024" /codon_start=1 /transl_table=11 /product="class II aminotransferase" /protein_id="NP_708795.1" /db_xref="GeneID:1026605" /translation="MGLYDKYARLAGERLQFSDNGLTPFGTCIDEVYSATEGRIGNKK VILAGTNNYLGLTFNHDAISEGQAALAAQGTGTTGSRMANGSYAPHLALEKEIAEFFN RPTAIVFQPVIPLI" misc_feature 3121613..>3121924 /locus_tag="SF3024" /note="7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]; Region: BioF; COG0156" /db_xref="CDD:439926" gene complement(3122802..3123881) /locus_tag="SF3026" /db_xref="GeneID:1026610" CDS complement(3122802..3123881) /locus_tag="SF3026" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708797.1" /db_xref="GeneID:1026610" /translation="MNVFSRYLIRHLFLGFAAAAGLLLPLFTTFNLINELDGVSPGGY RWTQAVLVVLMTLPRTLVELSPFIALLGGIVGLGQLSKNSELTAIRSTGFSIFRIALV ALVAGILWTVSLGAIDEWVASPLQQQALQIKSTATALGEDDDITGNMLWARRGNEFVT VKSLNEQGQPVGVEIFHYRDDLSLESYIYARSATIEDDKTWVLHGVNHKKWLNGKETL ETLDNLAWQSAFTSMNLEELSMPGNTFSVRQLNHYIHYLQETGQPSSEYHLALWEKLG QPILTLAMILLAVPFTFSAPRSPGMGSRLAVGVIVGLLTWISYQIMVNLGLLFALSAP VTALGLPVAFVLVALSLVYWYDRQH" misc_feature complement(3122820..3123794) /locus_tag="SF3026" /note="LPS export ABC transporter permease LptG; Region: LptG_lptG; TIGR04408" /db_xref="CDD:275201" gene complement(3123878..3124948) /locus_tag="SF3027" /db_xref="GeneID:1026593" CDS complement(3123878..3124948) /locus_tag="SF3027" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708798.1" /db_xref="GeneID:1026593" /translation="MKLVEHYIMRGTRRLVLIIVGFLIFIFASYSAQRYLTEAANGTL ALDVVLDIVFYKVLIALEMLLPVGLYVSVGVTLGQMYTDSEITAISAAGGSPGRLYKA VLYLAIPLSIFVTLLSMYGRPWAYAQIYQLEQQSQSELDVRQLRAKKFNTNDNGRMIL SQTVDQDNNRLTDALIYTSTANRTRIFRAGSVDVVDPSPEKPTVMLHNGTAYLLDHQG RDDNEQIYRNLQLHLNPLDQSPNVKRKAKSVTELARSAFPADHAELQWRQSRGLTALL MALLAISLSRVKPRQGRFSTLLPLTLLFIAIFYGGDVCRTLVANGAIPLIPGLWLVPG LMLMGLLILVARDFSLLQKFSR" misc_feature complement(3123950..3124939) /locus_tag="SF3027" /note="LPS export ABC transporter permease LptF; Region: LptF_YjgP; TIGR04407" /db_xref="CDD:275200" gene complement(3124979..3125539) /locus_tag="SF3028" /db_xref="GeneID:1026604" CDS complement(3124979..3125539) /locus_tag="SF3028" /note="Code: R; COG: COG3054" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708799.2" /db_xref="GeneID:1026604" /translation="MSSRLIIALIIMLLAPGVQAHNFVTGKTVTPVYIQEGGELLLNS DDEIHYQKWNSTQLAGKVRIIQYIAGRKSAKKKNSLLIKAVEAANFPQDRFQPTTIVN TDDAIFGTGYFVVGKIEKNKRRYPWAQFVIDGNGQGRVAWRLPEQSSTILVLNKAGQI QWAKDGSLTPEEVDHVIALAQKLINE" misc_feature complement(3124982..3125488) /locus_tag="SF3028" /note="Predicted transcriptional regulator YtfJ [General function prediction only]; Region: YtfJ; COG3054" /db_xref="CDD:442288" gene complement(3125551..3126375) /locus_tag="SF3029" /db_xref="GeneID:1026641" CDS complement(3125551..3126375) /locus_tag="SF3029" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708800.1" /db_xref="GeneID:1026641" /translation="MMRKYFPLEASERLFVAIEEDDVVDAQVSLPPTIALSCTTEIIH DNYALCLQFWLNGVDRQELLRLVRKQAKGDELTADERKQFKYMRARYKHLRFAQRLYL KKHQAGFLFGKTTVFLGRFQDGFRNGKKNIVSYYGNLLRIYLSSPVWSLVNYSLRHSQ LESVSSFIAYRQKQMHTLKEIIAKPRLTGREFHDVRKIISQQVSYYDTLRSLDPENKE ALQISRFLAAINGLMGDKHDDMVADDMENRQSYYAPLALDSDICQRLELLISRFPL" gene complement(3126375..3127724) /gene="yghQ" /locus_tag="SF3030" /db_xref="GeneID:1026606" CDS complement(3126375..3127724) /gene="yghQ" /locus_tag="SF3030" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708801.1" /db_xref="GeneID:1026606" /translation="MAGFNIKHWFADGAFRTIIRNSAWLGSSNVESALLGLLALSCAG KGMTPAMFGVLVIVQSYAKSISDFIKFQTWQLVVQYGTPALTNNNPQQFRNVVSFSFS LDIVSGAVAIVGGIALLPFLSHSLGLDDQSFWLAALYCTLIPSMASSTPTGILRAVDR FDLIAVQQATKPFLRAAGSVAAWYFDFGFVGFVIAWYVSNLVGGTMYWWFAARELRRR NIHNAFKLNLFESARHIKGAWSFVWSTNIAHSIWSARNSCSTVLVGIVLGPAAAGLFK IAMTFFDAAGTPAGLLGKSFYPEVMRLDPRTTRPWLLGVKSGLLAGGIGILVALAVLI VGKPLISLVFGVKYLEAYDLIQVMLGAIVISMLGFPQESLLLMAGKQRAFLVAQTIAS IGYIVLLFMFCHLFGVLGAAFAYFGGQCLDVALSLIPTLKAFFQRHSLLYNAAGEKS" misc_feature complement(3126444..3127682) /gene="yghQ" /locus_tag="SF3030" /note="Membrane protein involved in the export of O-antigen and teichoic acid [Cell wall/membrane/envelope biogenesis]; Region: RfbX; COG2244" /db_xref="CDD:441845" gene complement(3127770..3128528) /gene="yghR" /locus_tag="SF3031" /db_xref="GeneID:1026595" CDS complement(3127770..3128528) /gene="yghR" /locus_tag="SF3031" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708802.1" /db_xref="GeneID:1026595" /translation="MDALQTQTVNSTTAPQPNYIPGLIAVVGCDGTGKSTLTTDLVKS LQQHWQTERRYLGLLSGEDGDKIKRLPLVGVWLERRLAAKSSKTQSMKTKSPALWAAV IMYCFSLRRMANLRKVQRLAQSGVLVVSDRFPQAEISGFYYDGPGIGVERATGKISMF LAQRERSLYQKMAQYRPELIIRLGIDIDTAISRKPDHEYAELQDKIGVMSTIGYNGTK ILEIDSRAPYSEVLEQVQKAVSLVAIVSDRRSLT" misc_feature complement(3127812..3128462) /gene="yghR" /locus_tag="SF3031" /note="Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates...; Region: NK; cl17190" /db_xref="CDD:450170" misc_feature complement(order(3128421..3128432,3128445..3128447)) /gene="yghR" /locus_tag="SF3031" /note="active site" /db_xref="CDD:238977" gene complement(3128560..3129273) /gene="yghS" /locus_tag="SF3032" /db_xref="GeneID:1026644" CDS complement(3128560..3129273) /gene="yghS" /locus_tag="SF3032" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708803.1" /db_xref="GeneID:1026644" /translation="MNQRNMSIINSTPVRVIAIVGCDGSGKSTLTASLVNELAARMPT EHIYLGQSSGRIGEWISQLPVIGAPCGCYLRSKAAHVHEKPLTPPGNITALVIYLLSC WRAYKFRKMLCKSQQGYLLITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELK LYQWMASYLPVLLIRLGIDEQTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGR QPADEIMQASLRAIHAALS" misc_feature complement(3128572..3129231) /gene="yghS" /locus_tag="SF3032" /note="Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672" /db_xref="CDD:238835" misc_feature complement(order(3128704..3128706,3128875..3128877, 3128899..3128904,3128962..3128964,3128974..3128976, 3129190..3129192)) /gene="yghS" /locus_tag="SF3032" /note="TMP-binding site [active]" /db_xref="CDD:238835" misc_feature complement(order(3128623..3128625,3128716..3128718, 3129187..3129189)) /gene="yghS" /locus_tag="SF3032" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238835" gene 3129447..3130139 /gene="yghT" /locus_tag="SF3033" /db_xref="GeneID:1026650" CDS 3129447..3130139 /gene="yghT" /locus_tag="SF3033" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708804.1" /db_xref="GeneID:1026650" /translation="MQSITPPLIAVIGSDASGKSTVCEHLITVVEKYGAAERVHLGKQ AGNVGRAVTKLPLMGKSLHKTIERNQVKTAKKLPGPVPALVITAFVARRLLRFRHMLA CRRRGLIVLTDRYPQDQIPGAYDGTVFPPNVEGGRFVSWLASQERKAFHWMASHKPDL VIKLNVDLEVACARKPDHKRESLARKIAITPQLTFGGAQLVDIDANQPLEQVLVDAEK AITDFMTARGYH" misc_feature 3129468..3130112 /gene="yghT" /locus_tag="SF3033" /note="Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step...; Region: TMPK; cd01672" /db_xref="CDD:238835" misc_feature order(3129504..3129506,3129708..3129710,3129720..3129722, 3129783..3129788,3129810..3129812,3129978..3129980) /gene="yghT" /locus_tag="SF3033" /note="TMP-binding site [active]" /db_xref="CDD:238835" misc_feature order(3129507..3129509,3129966..3129968,3130059..3130061) /gene="yghT" /locus_tag="SF3033" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238835" gene complement(3130188..3131687) /gene="pitB" /locus_tag="SF3034" /db_xref="GeneID:1025243" CDS complement(3130188..3131687) /gene="pitB" /locus_tag="SF3034" /note="Code: P; COG: COG0306" /codon_start=1 /transl_table=11 /product="low-affinity phosphate transport protein" /protein_id="NP_708805.1" /db_xref="GeneID:1025243" /translation="MLNLFVGLDIYTGLLLLLALAFVLFYEAINGFHDTANAVATVIY TRAMQPQLAVVMAAFFNFFGVLLGGLSVAYAIVHMLPIDLLLNMGSTHGLAMVFSMLL AAIIWNLGTWFFGLPASSSHTLIGAIIGIGLTNALLTGSSVMDALNLREVTKIFSSLI VSPIVGLVIAGGLIFLLRRFWSGTKKRDRIHRIPEDRKKKKGKRKPPFWTRIALIVSA AGVAFSHGANDGQKGIGLVMLVLVGIAPAGFVVNMNASGYEITRTRDAVTNFEHYLQQ HPELPQKLIAMEPPLPAASTDGTQVTEFHCHPANTFDAIARVKTMLPGNMESYEPLSV SQRSQLRRIMLCISDTSAKLAKLPGVSKEDQNLLKKLRSDMLSTIEYAPVWIIMAVAL ALGIGTMIGWRRVAMTIGEKIGKRGMTYAQGMAAQMTAAVSIGLASYIGMPVSTTHVL SSAVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAIFLSGGLYWIALQLI" misc_feature complement(3130191..3131687) /gene="pitB" /locus_tag="SF3034" /note="Phosphate transporter family; Region: PHO4; cl27575" /db_xref="CDD:474944" gene complement(3131979..3133838) /gene="gsp" /locus_tag="SF3035" /db_xref="GeneID:1026646" CDS complement(3131979..3133838) /gene="gsp" /locus_tag="SF3035" /note="Code: E; COG: COG0754" /codon_start=1 /transl_table=11 /product="bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase" /protein_id="NP_708806.2" /db_xref="GeneID:1026646" /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYSSLDPQEYEDDAVF RSYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQ AFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHGNKVRIAEQNVIHSPLPQGQQ WTRELEMVVENGCYTLKDTFDDTTILGWMIQTEDTEYSLPQPEIAGELLKISGARLEN KGQFDGKWLDEKDPLQNAYVQANGQVINQDPYHYYTITESAEQELIKATNELHLMYLH ATDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNAD SASCHTEAGLILERWAEQGYKGNGFNPAEGLINELAGAWKHSRARPFVHIMQDKDIEE NYHAQFMEQALHQAGFETRILRGLDELGWDAAGQLIDGEGRLVNCVWKTWAWETAFDQ IREVSDREFAAVPIRTGHPQNEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLF PHHRYLLDTDFTVNDELVKTGYAVKPIAGRCGSNIDLVSHHEEVLDKTSGKFAEQKNI YQQLWCLPKVDGKYIQVCTFTVGGNYGGTCLRGDESLVIKKESDIEPLIVVKK" misc_feature complement(3131985..3133838) /gene="gsp" /locus_tag="SF3035" /note="bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional; Region: PRK10507" /db_xref="CDD:182504" gene 3133995..3134909 /locus_tag="SF3036" /db_xref="GeneID:1026653" CDS 3133995..3134909 /locus_tag="SF3036" /note="Code: O; COG: COG0625" /codon_start=1 /transl_table=11 /product="S-transferase" /protein_id="NP_708807.1" /db_xref="GeneID:1026653" /translation="MTCYTASTLPLRRQLTMTDNTYQPAKVWTWDKSAGGAFANINRP FSGPTHEKTLPVGKHPLQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGDGD QFSSGFVEVNPNSKIPALRDHTHNPPIRVFESGSILLYLAEKFGYFLPQDLAKRTETL NWLFWLQGAAPFLGGGFGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAQHKFVAG NEYTIADMAIWPWFGNVVLGGVYDAAEFLDAGSYKHVQRWAKEVGERPAVKRGRIVNR TNGPLNEQLHERHDASDFETNTEDKRQG" misc_feature 3134043..3134834 /locus_tag="SF3036" /note="putative S-transferase; Provisional; Region: PRK11752" /db_xref="CDD:183298" gene complement(3135032..3135280) /gene="hybG" /locus_tag="SF3037" /db_xref="GeneID:1026635" CDS complement(3135032..3135280) /gene="hybG" /locus_tag="SF3037" /note="Code: O; COG: COG0298" /codon_start=1 /transl_table=11 /product="hydrogenase 2 accessory protein HypG" /protein_id="NP_708808.1" /db_xref="GeneID:1026635" /translation="MCIGVPGQVLAVGEDIHQLAQVEVCGIKRDVNIALICEGNPADL LGQWVLVHVGFAMSIIDEDEAKATLDALRQMDYDITSA" misc_feature complement(3135035..3135280) /gene="hybG" /locus_tag="SF3037" /note="hydrogenase maturation factor HybG; Region: PRK10413" /db_xref="CDD:182438" gene complement(3135414..3135755) /gene="hypA" /locus_tag="SF3038" /db_xref="GeneID:1026631" CDS complement(3135414..3135755) /gene="hypA" /locus_tag="SF3038" /note="Code: R; COG: COG0375" /codon_start=1 /transl_table=11 /product="hydrogenase nickel incorporation protein HybF" /protein_id="NP_708809.2" /db_xref="GeneID:1026631" /translation="MHELSLCQSAVEIIQRQAEQHDVKRVTAVWLEIGALSCVEESAV RFSFEIVCHGTVAQGCDLHIVYKPAQAWCWDCSQVVEIHQHDAQCPLCHGERLRVDTG DSLIVKSIEVE" misc_feature complement(3135417..3135755) /gene="hypA" /locus_tag="SF3038" /note="hydrogenase/urease nickel incorporation protein; Region: PRK12380" /db_xref="CDD:183485" gene complement(3135748..3136236) /gene="hybE" /locus_tag="SF3039" /db_xref="GeneID:1026648" CDS complement(3135748..3136236) /gene="hybE" /locus_tag="SF3039" /codon_start=1 /transl_table=11 /product="hydrogenase 2-specific chaperone" /protein_id="NP_708810.1" /db_xref="GeneID:1026648" /translation="MTEEIAGFQTSPKAQVQAAFEEIARRSMHDLSFLHPSMPVYVSD FTLFEGQWTGCVITPWMLSAVIFPGPDQLWPLRKVSEKIGLQLPYGTMTFTVGELDGV SQYLSCSLMSPLSHSMSIEEGQRLTDDCARMILSLPVTNPDVPHAGRRALLFGRRRGE NA" misc_feature complement(3135760..3136236) /gene="hybE" /locus_tag="SF3039" /note="hydrogenase-2 assembly chaperone; Region: PRK10465" /db_xref="CDD:182480" gene complement(3136229..3136723) /gene="hybD" /locus_tag="SF3040" /db_xref="GeneID:1026836" CDS complement(3136229..3136723) /gene="hybD" /locus_tag="SF3040" /note="Code: C; COG: COG0680" /codon_start=1 /transl_table=11 /product="hydrogenase 2 maturation endopeptidase" /protein_id="NP_708811.1" /db_xref="GeneID:1026836" /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYILPDYVEILDGGTA GMELLGDMANRDHLIIADAIVSKKNTPGTMMILRDEEVPALFTNKISPHQLGLADVLS ALRFTGEFPKKLTLVGVIPESLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPRE AIHD" misc_feature complement(3136232..3136723) /gene="hybD" /locus_tag="SF3040" /note="HyaD/HybD family hydrogenase maturation endopeptidase; Region: hybD; PRK10466" /db_xref="CDD:182481" misc_feature complement(order(3136598..3136606,3136652..3136654, 3136694..3136696)) /gene="hybD" /locus_tag="SF3040" /note="putative substrate-binding site [active]" /db_xref="CDD:99873" misc_feature complement(order(3136445..3136447,3136538..3136540, 3136676..3136678)) /gene="hybD" /locus_tag="SF3040" /note="nickel binding site [ion binding]; other site" /db_xref="CDD:99873" gene complement(3136723..3138426) /gene="hybC" /locus_tag="SF3041" /db_xref="GeneID:1026601" CDS complement(3136723..3138426) /gene="hybC" /locus_tag="SF3041" /note="Code: C; COG: COG0374" /codon_start=1 /transl_table=11 /product="hydrogenase 2 large subunit" /protein_id="NP_708812.1" /db_xref="GeneID:1026601" /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI VKNRDPRDAWMIVQRICGVCTTTHALSSVRAAESALNIDVPVNAQYIRNIILAAHTTH DHIVHFYQLSALDWVDITSALQADPTKASEMLKGVSTWHLNSPEEFTKVQNKIKDLVA SGQLGIFANGYWGHPAMKLPPEVNLIAVAHYLQALECQRDANRVVALLGGKTPHIQNL AVGGVANPINLDGLGVLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAFYPEWLTRG KGAVNYLSVPEFPTDSKNGSFLFPGGYIENADLSSYRPITSHSDEYLIKGIQESAKHS WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLVKLAAGRE STQNKLNEIVAIYQKLTGNTLEVAQLHSTLGRIIGRTVHCCELQDILQNQYSALITNI GKGDHTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP RNFNDDVGPYEQSLVGTPVADPNKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV L" misc_feature complement(3136726..3138426) /gene="hybC" /locus_tag="SF3041" /note="hydrogenase 2 large subunit; Provisional; Region: PRK10467" /db_xref="CDD:182482" gene complement(3138423..3139601) /gene="hybB" /locus_tag="SF3042" /db_xref="GeneID:1026636" CDS complement(3138423..3139601) /gene="hybB" /locus_tag="SF3042" /codon_start=1 /transl_table=11 /product="hydrogenase 2 b cytochrome subunit" /protein_id="NP_708813.1" /db_xref="GeneID:1026636" /translation="MSHDPQPLGGKIISKPVMIFGPLIVICMLLIVKRLVFGLGSVSD LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK VSLQRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSLLTAF IMGFSIVIFEGSLVQAGLRGNGPDEKSLFVKLTNTISVLLAIFIGLRFGELIYRDKLS LAFAGDFYSVMFWIEVLLMLFPLVVLRVAKLRNDSRMLFLSALSALLGCATWRLTYSL VAFNPGGGYAYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA " misc_feature complement(3138426..3139601) /gene="hybB" /locus_tag="SF3042" /note="Ni/Fe-hydrogenase cytochrome b subunit; Region: PRK10881" /db_xref="CDD:236785" gene complement(3139591..3140577) /gene="hybA" /locus_tag="SF3043" /db_xref="GeneID:1026628" CDS complement(3139591..3140577) /gene="hybA" /locus_tag="SF3043" /note="Code: C; COG: COG0437" /codon_start=1 /transl_table=11 /product="hydrogenase 2 protein HybA" /protein_id="NP_708814.1" /db_xref="GeneID:1026628" /translation="MNRRNFIKAASCGALLTGALPSVSHAAAENRPPIPGSLGMLYDS TLCVGCQACVTKCQDINFPERNPQGEQTWSNNDKLSPYTNNIIQVWTSGTGVNKDQEE NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL ALKPGSEYHYPRQTLKSGDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYENLDLPK LDDLSTGARSENIQHTLYKGMMLPLAVLAGLTVLVRRNTKNDHHDGGDDHES" misc_feature complement(3139594..3140577) /gene="hybA" /locus_tag="SF3043" /note="hydrogenase 2 operon protein HybA; Region: PRK10882" /db_xref="CDD:236786" gene complement(3140580..3141698) /locus_tag="SF3044" /db_xref="GeneID:1025036" CDS complement(3140580..3141698) /locus_tag="SF3044" /note="Code: C; COG: COG1740" /codon_start=1 /transl_table=11 /product="hydrogenase 2 small subunit" /protein_id="NP_708815.1" /db_xref="GeneID:1025036" /translation="MTGDNTLIHSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVT NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAAEGSAAIIAIGSCSAW GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGKPPKLDDKN RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHREGWCLYHLGCKGPETYGNCSTLQ FCDVGGVWPVAIGHPCYGCNEKGIGFHKGIHQLANVENQTPRSQKPDVNAKEGGNVSA GAIGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE" misc_feature complement(3140586..3141698) /locus_tag="SF3044" /note="hydrogenase 2 small subunit; Provisional; Region: PRK10468" /db_xref="CDD:182483" gene complement(3141887..3142174) /locus_tag="SF3045" /db_xref="GeneID:1026642" CDS complement(3141887..3142174) /locus_tag="SF3045" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708816.1" /db_xref="GeneID:1026642" /translation="MNNHFGKGLMAGLKATHADSAVNVTKFCADYKRGFVLGYSHRMY EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFRENNSCSTLRFFMAGYRLEN" misc_feature complement(3141896..3142174) /locus_tag="SF3045" /note="Protein of unknown function (DUF2623); Region: DUF2623; pfam11115" /db_xref="CDD:431663" gene complement(3142293..3143219) /locus_tag="SF3046" /db_xref="GeneID:1026652" CDS complement(3142293..3143219) /locus_tag="SF3046" /note="Code: Q; COG: COG0412" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708817.3" /db_xref="GeneID:1026652" /translation="MLCLKKHQLRNATMPRLTAKDFPQELLDYYDYYVHGKISKREFL NLAAKYAVGGMTALALFDLLKPNYALATQVEFTDPEIVAEYITYPSPNGHGEVRGYLV KPAKMSGKTPAVGVVHENRGLNPYIEDVARRVAKAGYIALAPDGLSSVGGYPGNDDKG RELQQQVDPTKLMNDFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACA VPFYGRQAPTADVAKIEAPLLLHFAELDTRINEGWPPYEAALKDNNKVYEAYIYPGVN HGFHNDSTPRYDKSAADLAWQRTLKWFDKYLS" misc_feature complement(3142299..3143174) /locus_tag="SF3046" /note="YghX family hydrolase; Region: hydrolase_YghX; NF041440" /db_xref="CDD:469331" gene 3143337..3144377 /locus_tag="SF3047" /db_xref="GeneID:1026629" CDS 3143337..3144377 /locus_tag="SF3047" /note="Code: C; COG: COG0667" /codon_start=1 /transl_table=11 /product="L-glyceraldehyde 3-phosphate reductase" /protein_id="NP_708818.1" /db_xref="GeneID:1026629" /translation="MVWLANPERYGQMQYRYCGKSGLRLPALSLGLWHNFGHVNALES QRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAAYRDELIISTKAGYDM WPGPYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSG KALYVGISSYSPERTQKMVELLHEWKIPLLIHQPSYNLLNRWVDKSGLLDTLQNNGVG CIAFTPLAQGLLTGKYLNGIPQDSRMHREGNKVRGLTPKMLTEANLNSLRLLNEMAQQ RGQSMAQMALSWLLKDDRVTSVLIGASRAEQLEENVQALNNLTFSTEELAQIDQHIAD GELNLWQASSDK" misc_feature 3143337..3144374 /locus_tag="SF3047" /note="L-glyceraldehyde 3-phosphate reductase; Provisional; Region: PRK09912" /db_xref="CDD:182140" misc_feature order(3143427..3143435,3143439..3143441,3143517..3143519, 3143529..3143534,3143634..3143636,3143748..3143750, 3143838..3143840,3143913..3143915,3144000..3144017, 3144027..3144029,3144033..3144035,3144180..3144182, 3144231..3144245,3144255..3144257,3144264..3144269) /locus_tag="SF3047" /note="active site" /db_xref="CDD:381376" misc_feature order(3143517..3143519,3143532..3143534,3143625..3143627, 3143748..3143750) /locus_tag="SF3047" /note="catalytic tetrad [active]" /db_xref="CDD:381376" gene complement(3144417..3144911) /gene="yqhA" /locus_tag="SF3048" /db_xref="GeneID:1026626" CDS complement(3144417..3144911) /gene="yqhA" /locus_tag="SF3048" /note="Code: S; COG: COG2862" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708819.2" /db_xref="GeneID:1026626" /translation="MERFLENAMYASRWLLAPVYFGLSLALVALALKFFQEIIHVLPN IFSMAESDLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISENKEKLKWLGKMDA TSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT RHNH" misc_feature complement(3144420..3144911) /gene="yqhA" /locus_tag="SF3048" /note="Uncharacterized membrane protein YqhA [Function unknown]; Region: YqhA; COG2862" /db_xref="CDD:442109" gene 3145102..3145986 /gene="yghA" /locus_tag="SF3049" /db_xref="GeneID:1026633" CDS 3145102..3145986 /gene="yghA" /locus_tag="SF3049" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_708820.1" /db_xref="GeneID:1026633" /translation="MSHLKDPTTQYYTGEYPKQKQPTPGIQAKMTPIPDCGEKTYVGS GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKA VLLPGDLSDEKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAIN VFALFWLTQEAIPLLPKGASVITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQKTPMKRAGQPAELAPVYVYLASQE SSYVTAEVHGVCGGEHLG" misc_feature 3145102..3145983 /gene="yghA" /locus_tag="SF3049" /note="SDR family oxidoreductase; Region: PRK07985" /db_xref="CDD:181188" gene complement(3146258..3146683) /gene="exbD" /locus_tag="SF3050" /db_xref="GeneID:1026651" CDS complement(3146258..3146683) /gene="exbD" /locus_tag="SF3050" /note="Code: N; COG: COG0848" /codon_start=1 /transl_table=11 /product="biopolymer transport protein ExbD" /protein_id="NP_708821.1" /db_xref="GeneID:1026651" /translation="MAMHLNENLDDNGEMHDINVTPFIDVMLVLLIIFMVAAPLATVD VKVNLPASTSTPQPRPEKPVYLSVKADNSMFIGNDPVTDETMITALNALTEGKKDTTI FFRADKTVDYETLMKVMDTLHQAGYLKIGLVGEETAKAK" misc_feature complement(3146261..3146683) /gene="exbD" /locus_tag="SF3050" /note="biopolymer transport protein ExbD; Provisional; Region: PRK11267" /db_xref="CDD:183064" gene complement(3146690..3147424) /gene="exbB" /locus_tag="SF3051" /db_xref="GeneID:1026666" CDS complement(3146690..3147424) /gene="exbB" /locus_tag="SF3051" /note="Code: N; COG: COG0811" /codon_start=1 /transl_table=11 /product="biopolymer transport protein ExbB" /protein_id="NP_708822.1" /db_xref="GeneID:1026666" /translation="MGNNLMQTDLSVWGMYQYADIVVKCVMIGLILASVVTWAIFFSK SVEFFNQKRRLKREQQLLAEARSLNQANDIAADFGSKSLSLHLLNEAQNELELSEGSD DNEGIKERTSFRLERRVAAVGRQMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNVFARQIGGFKAMLGDVAAQVLL LQSRDLDLEASAAAHPVRVAQKLRAG" misc_feature complement(3146693..3147424) /gene="exbB" /locus_tag="SF3051" /note="biopolymer transporter ExbB; Region: PRK10414" /db_xref="CDD:236685" gene complement(3147417..3147572) /locus_tag="SF3052" /db_xref="GeneID:1026643" CDS complement(3147417..3147572) /locus_tag="SF3052" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708823.1" /db_xref="GeneID:1026643" /translation="MLVTFLLRKRKEKKAKVRQYANSNENDYQFDVVLILLCADFVTC VLEIHSG" gene 3147676..3148863 /gene="metC" /locus_tag="SF3053" /db_xref="GeneID:1026637" CDS 3147676..3148863 /gene="metC" /locus_tag="SF3053" /note="Code: E; COG: COG0626" /codon_start=1 /transl_table=11 /product="cystathionine beta-lyase" /protein_id="NP_708824.1" /db_xref="GeneID:1026637" /translation="MADKKLDTQLVNAGRSKKYTLGAVNSVIQRASSLVFESMEAKKH ATRNRANGELFYGRRGTLTHFSLQQAMCELEGGAGCALFPCGAAAVANSILAFVEQGD HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPLIGADIVKHLQPNTKIVFLESPGSIT MEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKALDFGIDVSIQAATKYLVGHSDA MIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLGVRLRQHHESSLKVAEW LAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNDEELANYLDNFSLF SMAYSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFA RIV" misc_feature 3147676..3148860 /gene="metC" /locus_tag="SF3053" /note="cystathionine beta-lyase; Provisional; Region: PRK08114" /db_xref="CDD:181231" misc_feature order(3147763..3147774,3147778..3147783,3147841..3147843, 3147847..3147849,3147925..3147930,3147934..3147939, 3148006..3148008,3148021..3148023,3148030..3148032, 3148300..3148302,3148324..3148326,3148330..3148332, 3148378..3148380,3148408..3148410,3148414..3148419, 3148660..3148662) /gene="metC" /locus_tag="SF3053" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99738" misc_feature order(3147928..3147936,3148006..3148008,3148135..3148137, 3148228..3148230,3148294..3148296,3148300..3148305, 3148330..3148332) /gene="metC" /locus_tag="SF3053" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:99738" misc_feature order(3147928..3147936,3148006..3148008,3148228..3148230, 3148237..3148239,3148294..3148296,3148300..3148305) /gene="metC" /locus_tag="SF3053" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature 3148303..3148305 /gene="metC" /locus_tag="SF3053" /note="catalytic residue [active]" /db_xref="CDD:99738" gene 3149003..3149662 /gene="yghB" /locus_tag="SF3054" /db_xref="GeneID:1026624" CDS 3149003..3149662 /gene="yghB" /locus_tag="SF3054" /note="Code: S; COG: COG0586" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708825.1" /db_xref="GeneID:1026624" /translation="MAVIQDIIAALWQHDFAALADPHIVSVVYFVMFATLFLENGLLP ASFLPGDSLLILAGALIAQGVMDFLPTIAILTAAASLGCWLSYIQGSWLGNTKTVKGW LAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLPNRRFQFFNWLS GLLWVSVVTSFGYALSMIPFVKRHEDQVMTFLMILPIALLTAGLLGTLFVVIKKKYCN A" misc_feature 3149072..3149587 /gene="yghB" /locus_tag="SF3054" /note="Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family [Cell wall/membrane/envelope biogenesis]; Region: DedA; COG0586" /db_xref="CDD:440351" gene complement(3149702..3150829) /gene="yqhC" /locus_tag="SF3056" /db_xref="GeneID:1026627" CDS complement(3149702..3150829) /gene="yqhC" /locus_tag="SF3056" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_708826.1" /db_xref="GeneID:1026627" /translation="MRVGVCRLKLFITCSLCWANMRAENDLPDVFHCDRQRPGSQCSF LPMSCLFLQSAGEMLQNCAQSNCRIIPKKLRDMKREEICRLLADKVNKLKNKENSLSE LLPDVRLLYGETPFARTPVMYEPGIIILFSGHKIGYINERVFRYDANEYLLLTVPLPF ECETYATSEVPLAGLRLNVDILQLQELLMDIGEDEHFQPSMAASGINSATLSEEILCA AERLLDVMERPLDARILGKQIIREILYYVLTGPCGGALLALVSRQTHFSLISRVLKRI ENKYTENLSVEQLAAEANMSVSAFHHNFKSVTSTSPLQYLKNYRLHKARMMIIHDGMK ASAAAMRVGYESASQFSREFKRYFGVTPGEDAARMRAMQGN" misc_feature complement(3150065..3150520) /gene="yqhC" /locus_tag="SF3056" /note="AraC-type transcriptional regulator N-terminus; Region: AraC_N; pfam06719" /db_xref="CDD:461994" misc_feature complement(3149738..3149983) /gene="yqhC" /locus_tag="SF3056" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:197666" gene 3150795..3151958 /gene="yqhD" /locus_tag="SF3055" /db_xref="GeneID:1026664" CDS 3150795..3151958 /gene="yqhD" /locus_tag="SF3055" /note="Code: C; COG: COG1979" /codon_start=1 /transl_table=11 /product="aldehyde reductase" /protein_id="NP_708827.2" /db_xref="GeneID:1026664" /translation="MNNFNLHTPTRILFGKGAIAGLREQIPHDARVLITYGGGSVKKT GVLDQVLDALKGMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSVLDGTK FIAAAANYPENIDPWHILQTGGKEIKSAIPMGCVLTLPATGSESNAGAVISRKTTGDK QAFHSAHVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTKPVDAKIQDRFAE GILLTLIEDGPKALKEPENYDVRANVMWAATQALNGLIGTGVPQDWATHMLGHELTAM HGLDHAQTLAIVLPALWNEKRETKRAKLLQYAERVWNITEGSDDERIDAAIAATRNFF EQLGVPTHLSDYGLDGSSIPALLKKLEEHGMTQLGENHDITLDVSRRIYEAAR" misc_feature 3150795..3151955 /gene="yqhD" /locus_tag="SF3055" /note="alcohol dehydrogenase; Region: PRK15138" /db_xref="CDD:185092" misc_feature order(3150819..3150821,3150825..3150830,3150834..3150839, 3151458..3151460,3151470..3151472,3151518..3151523, 3151530..3151532) /gene="yqhD" /locus_tag="SF3055" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:341466" misc_feature order(3150906..3150914,3150993..3150998,3151074..3151082, 3151089..3151091,3151206..3151211,3151218..3151220, 3151224..3151226,3151233..3151235,3151239..3151241, 3151245..3151247,3151272..3151274,3151329..3151331, 3151338..3151343,3151374..3151376,3151386..3151388, 3151593..3151595,3151635..3151637) /gene="yqhD" /locus_tag="SF3055" /note="active site" /db_xref="CDD:341466" misc_feature order(3151374..3151376,3151386..3151388,3151593..3151595, 3151635..3151637) /gene="yqhD" /locus_tag="SF3055" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:341466" gene 3152180..3152890 /gene="yqhE" /locus_tag="SF3057" /db_xref="GeneID:1026689" CDS 3152180..3152890 /gene="yqhE" /locus_tag="SF3057" /note="Code: R; COG: COG0656" /codon_start=1 /transl_table=11 /product="2,5-didehydrogluconate reductase A" /protein_id="NP_708828.4" /db_xref="GeneID:1026689" /translation="MGYRSIDTAAAYKNEEGVGKALKNASVNREELFITTKLWNDDHK RPREALLDSLKKLQLDYIDLYLMHWPVPAIDHYVEAWKGMIELQKEGLIKSIGVCNFQ IHHLQRLIDETGVTPVINQIELHPLMQQRQLHAWNATHKIQTESWSPLAQGGKGVFDQ KVIRDLADKYGKTPAQIVIRWHLDSGLVVIPKSVTPSRIAENFDVWDFRLDKDELGKI AKLDQGKRLGPDPDQFGG" misc_feature 3152183..3152887 /gene="yqhE" /locus_tag="SF3057" /note="2,5-didehydrogluconate reductase DkgA; Region: dkgA; PRK11565" /db_xref="CDD:183203" misc_feature order(3152198..3152200,3152213..3152215,3152288..3152290, 3152381..3152383,3152474..3152479,3152540..3152542, 3152618..3152638,3152702..3152704,3152747..3152758, 3152771..3152773,3152780..3152785) /gene="yqhE" /locus_tag="SF3057" /note="active site" /db_xref="CDD:381357" misc_feature order(3152198..3152200,3152213..3152215,3152288..3152290, 3152381..3152383) /gene="yqhE" /locus_tag="SF3057" /note="catalytic tetrad [active]" /db_xref="CDD:381357" gene 3153090..3154016 /gene="yqhG" /locus_tag="SF3058" /db_xref="GeneID:1026676" CDS 3153090..3154016 /gene="yqhG" /locus_tag="SF3058" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708829.2" /db_xref="GeneID:1026676" /translation="MKIILLFLAALASFTVHAQPPSQTVEQTVRQIYQNYKSDASTPY FGETGERAITSARIQQALTLNDNLTLPGNIGWLDYDPVCDCQDFGDLVLESVAITQTD VDHADAVVRFRIFKDDKEKTTQTLKMVAENGRWVIDDIVSNHGSVLQAVNSENEKTLA ALASLQKEQPESFVAELFEHIADYSWPWTWVVSDSYRQAVNAFYKTTFKTANNPDEDM QIERQFIYDNPICFGEESLFSRVDEIRVLEKTADSARIHVRFTLTNGNNEEQELVLQR REGKWEIADFIRPNSGSLLKQIEAKTAARLKQ" misc_feature 3153162..3153518 /gene="yqhG" /locus_tag="SF3058" /note="Protein of unknown function (DUF3828); Region: DUF3828; pfam12883" /db_xref="CDD:403935" gene 3154067..3154324 /gene="yqhH" /locus_tag="SF3059" /db_xref="GeneID:1026673" CDS 3154067..3154324 /gene="yqhH" /locus_tag="SF3059" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_708830.1" /db_xref="GeneID:1026673" /translation="MKTIFTVGAVVLATCLLSGCVNEQKVNQLASNVQTLNAKIARLE QDMKALRPQIYAAKSEANRANTRLDAQDYFDCLRCLRMYAE" misc_feature 3154067..3154321 /gene="yqhH" /locus_tag="SF3059" /note="lipoprotein YqhH; Region: PRK09973" /db_xref="CDD:170188" gene complement(3154367..3156586) /locus_tag="SF3060" /db_xref="GeneID:1026838" CDS complement(3154367..3156586) /locus_tag="SF3060" /note="Code: C; COG: COG1032" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708831.3" /db_xref="GeneID:1026838" /translation="MSSISLIQPDRDLFSWPQYWAACFGPAPFLPMSREEMDQLGWDS CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWSSKDDFMRLGKPNLFFG VTAGNMDSMINRYTADRRLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGEPISEIR DVRNTAIIVKEALPGWSGVDSTRLDTLGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA VIVQPPRQKPWEKTYVLLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY VWINPPAIPLSTEEMDSVFALPYKRVPHPAYGNARIPAYEMIRFSVNIMRGCFGGCSF CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE QTCRRLSCVYPDICPHMDTNHEPTINLYRRARDLKGIKKILIASGVRYDIAVEDPRYI KELATHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDTYSKQAGKEQYLIPY FISAHPGTRDEDMVNLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLAKIGYK SEGVFVPKGDKQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGSRRDCLVPAPTIE EMREARRQNRNTRPALTKHTPMATQRQTPATAKKASSTQSRPVNAGAKKRPKAAVGR" misc_feature complement(3154652..3156502) /locus_tag="SF3060" /note="uncharacterized radical SAM protein YgiQ; Region: SAM_YgiQ; TIGR03904" /db_xref="CDD:274847" misc_feature complement(3154391..3154807) /locus_tag="SF3060" /note="Domain of unknown function (DUF3362); Region: DUF3362; pfam11842" /db_xref="CDD:432120" gene complement(3156697..3158109) /gene="sufI" /locus_tag="SF3061" /db_xref="GeneID:1026663" CDS complement(3156697..3158109) /gene="sufI" /locus_tag="SF3061" /note="Code: Q; COG: COG2132" /codon_start=1 /transl_table=11 /product="FtsI repressor" /protein_id="NP_708832.1" /db_xref="GeneID:1026663" /translation="MSLSRRQFIQASGIALCAGAVPLKASAAGQQQPLPVPPLLESRR GQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMT VAGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGM WLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ SPYVEVSRGWVRLRLLNASNSRRYQLQMSDGRPLHVISGDQGFLPAPVSVKQLSLAPG ERREILVDMSNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD SLPMRLLPTEIMAGSPIRSRDISLGDDPGINGQLWDVNRIDVTAQQGTWERWTVRADE PQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYFGQPSWAHFPFYFNS QTLEMADRGSIGQLLVNPVP" misc_feature complement(3156700..3158109) /gene="sufI" /locus_tag="SF3061" /note="FtsI repressor; Provisional; Region: PRK10883" /db_xref="CDD:182808" gene complement(3158184..3158921) /gene="plsC" /locus_tag="SF3062" /db_xref="GeneID:1026672" CDS complement(3158184..3158921) /gene="plsC" /locus_tag="SF3062" /note="Code: I; COG: COG0204" /codon_start=1 /transl_table=11 /product="1-acyl-sn-glycerol-3-phosphate acyltransferase" /protein_id="NP_708833.1" /db_xref="GeneID:1026672" /translation="MLYIFRLIITVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR LAPLFGLKVECRKPADAESYGNAIYIANHQNNYDMVTASNIVQPPTVTVGKKSLLWIP FFGQLYWLTGNLLIDRNNRTKAHGTIAEVVNHFKKRRISIWMFPEGTRSRGRGLLPFK TGAFHAAIAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELA AHCRSIMEQKIAELDKEVAEREAAGKV" misc_feature complement(3158187..3158921) /gene="plsC" /locus_tag="SF3062" /note="1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional; Region: PRK15018" /db_xref="CDD:184979" misc_feature complement(order(3158472..3158480,3158631..3158642, 3158688..3158690,3158694..3158696,3158703..3158705)) /gene="plsC" /locus_tag="SF3062" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153251" gene complement(3159155..3161413) /gene="parC" /locus_tag="SF3063" /db_xref="GeneID:1026670" CDS complement(3159155..3161413) /gene="parC" /locus_tag="SF3063" /note="Code: L; COG: COG0188" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV subunit A" /protein_id="NP_708834.1" /db_xref="GeneID:1026670" /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR IVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG QGNWGAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPAR LPNILLNGTTGIAVGMATDIPPHNLREVAQAAIALIDQPKTTLDQLLDIVQGPDYPTE AEIITSRAEIRKIYENGRGSVRMRAVWKKEDGAVVISALPHQVSGARVLEQIAAQMRN KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGL DGRPAVKNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI IRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI LASERKMNNLLKKELQADAQAYGDDRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMG WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQ GEPLTGKLTLPPGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITL PENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSKGKGNKIINIPSAEAARG EDGLAQLYVLPPQSTLTIHVGKRKIKLRPEELQKVTGERGRRGTLMRGLQRIDRVEID SPRRASSGDSEE" misc_feature complement(3159200..3161401) /gene="parC" /locus_tag="SF3063" /note="DNA topoisomerase IV, A subunit, proteobacterial; Region: parC_Gneg; TIGR01062" /db_xref="CDD:130134" misc_feature complement(3159800..3159919) /gene="parC" /locus_tag="SF3063" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(3159653..3159793) /gene="parC" /locus_tag="SF3063" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(3159506..3159640) /gene="parC" /locus_tag="SF3063" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(3159335..3159496) /gene="parC" /locus_tag="SF3063" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" gene complement(3161959..3162441) /locus_tag="SF3064" /db_xref="GeneID:1026682" CDS complement(3161959..3162441) /locus_tag="SF3064" /note="Code: L; COG: COG3449" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708835.1" /db_xref="GeneID:1026682" /translation="MTNLTLDVNIIDFPSIPVAMLPHRCSPELLNYSVAKFIMWRKET GLSPVNQSQTFGVAWDAPATTAPEAFRFDICGSVSEPIPDNRYGVSNGELTGGRYAVA RHVGELDDISHTIWGIIRHWLPASGEKMRKAPILFHYTNLAEGVTEQRLETDVYVPLA " misc_feature complement(3161962..>3162429) /locus_tag="SF3064" /note="DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair]; Region: SbmC; COG3449" /db_xref="CDD:442672" gene complement(3162494..3162886) /gene="ygiW" /locus_tag="SF3065" /db_xref="GeneID:1024418" CDS complement(3162494..3162886) /gene="ygiW" /locus_tag="SF3065" /note="Code: S; COG: COG3111" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708836.2" /db_xref="GeneID:1024418" /translation="MKKFAAVIAVMALCSAPVMAAEQGGFSGPSVTQSQAGGFQGPNG SVTTVESAKSLRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPK DTVEIQGEVDKDWNSVEIDVKQIRKVNP" misc_feature complement(3162506..3162883) /gene="ygiW" /locus_tag="SF3065" /note="TIGR00156 family protein; Region: TIGR00156" /db_xref="CDD:129260" gene 3163038..3163697 /gene="ygiX" /locus_tag="SF3066" /db_xref="GeneID:1026634" CDS 3163038..3163697 /gene="ygiX" /locus_tag="SF3066" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator QseB" /protein_id="NP_708837.1" /db_xref="GeneID:1026634" /translation="MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSAP YDAVILDLTLPGMDGRDILREWREKGQREPVLNLTARDALAERVEGLRLGADDYLCKP FALIEVAARLEALMRRTNGQASNELRHGNVMLDPGKRIATLAGEPLTLKPKEFALLEL LMRNAGRVLPRKLIEEKLYTWDEEVTSNAVEVHVHHLRRKLGSDFIRTVHGIGYTLGE K" misc_feature 3163038..3163694 /gene="ygiX" /locus_tag="SF3066" /note="two-component system response regulator QseB; Region: PRK10336" /db_xref="CDD:182387" gene 3163694..3164968 /gene="ygiY" /locus_tag="SF3067" /db_xref="GeneID:1026638" CDS 3163694..3164968 /gene="ygiY" /locus_tag="SF3067" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="sensor protein QseC" /protein_id="NP_708838.1" /db_xref="GeneID:1026638" /translation="MKFTQRLSLRVRLTLIFLILASVTWLLSSFVAWKQTTDNVDELF DTQLMLFAKRLSTLDLNEINAADRMAQTPNKLKHGHVDDDALTFAIFTHDGRMVLNDG DNGEDIPYSYQREGFADGQLVGEDDPWRFVWMTSPDGKYRIVVGQEWEYREDMALAIV AGQLIPWLVALPIMLIIMMVLLGRELAPLNKLALALRMRDPDSEKPLNATGVPSEVRP LVESLNQLFARTHAMMVRERRFTSDAAHELRSPLTALKVQTEVAQLSDDDPQARKKAL LQLHSGIDRATRLVDQLLTLSRLDSLDNLQDVAEIPLEDLLQSSVMDIYHTAQQAKID VRLTLNAHGIKRTGQPLLLSLLVRNLLDNGPGVTPEALARIGERFYRPPGQTATGSGL GLSIVQRIAKLHDMNVEFGNAEQGGFEAKVSW" misc_feature 3163694..3164965 /gene="ygiY" /locus_tag="SF3067" /note="sensor protein QseC; Provisional; Region: PRK10337" /db_xref="CDD:182388" gene complement(3165014..3165346) /locus_tag="SF3067a" /db_xref="GeneID:16608358" CDS complement(3165014..3165346) /locus_tag="SF3067a" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_008439282.1" /db_xref="GeneID:16608358" /translation="MLKQKIKTIFEALLYIMLTYWLIDSFFAFNKYDWMLESGGNICS IPSVSGEDRILQAMIAAFFLLTPLIILILRKLFMREMFEFWLYVFSLVICLVCGWWLF WGRFIFCY" gene 3165665..3166246 /gene="mdaB" /locus_tag="SF3068" /db_xref="GeneID:1026839" CDS 3165665..3166246 /gene="mdaB" /locus_tag="SF3068" /note="Code: R; COG: COG2249" /codon_start=1 /transl_table=11 /product="modulator of drug activity B" /protein_id="NP_708839.1" /db_xref="GeneID:1026839" /translation="MSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRA DSDYNVKAEVQNFLWADVVIWQMPGWWMGAPWTVKKYIDDVFTEGHGTLYASDGRTRK DPSKKYGSGSLVQDKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGM EPLPTFIANDVIKMPDVPRYTEEYRKHLVEIFG" misc_feature 3165668..3166228 /gene="mdaB" /locus_tag="SF3068" /note="Flavodoxin-like fold; Region: Flavodoxin_2; pfam02525" /db_xref="CDD:426816" gene 3166277..3166591 /gene="ygiN" /locus_tag="SF3069" /db_xref="GeneID:1026660" CDS 3166277..3166591 /gene="ygiN" /locus_tag="SF3069" /note="Code: S; COG: COG1359" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708840.1" /db_xref="GeneID:1026660" /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMV DCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPHMKAYSEAVKGDVLEMNIRILQP GI" misc_feature 3166280..3166579 /gene="ygiN" /locus_tag="SF3069" /note="Quinol monooxygenase YgiN [Energy production and conversion]; Region: YgiN; COG1359" /db_xref="CDD:440970" gene complement(3166639..3168531) /gene="parE" /locus_tag="SF3070" /db_xref="GeneID:1026661" CDS complement(3166639..3168531) /gene="parE" /locus_tag="SF3070" /note="Code: L; COG: COG0187" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV subunit B" /protein_id="NP_708841.2" /db_xref="GeneID:1026661" /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN KNYQFSGGLHGVGISVVNALSKRVEVNVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN TGTSVHFWPDETFFDSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQDG LNDYLAEAVNGLPTLPEKPFIGNFAGDTEAVDWALLWLPEGGELLTESYVNLIPTMQG GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK ERLSSRQCAAFVSGVVKDAFILWLNQNVQAAELLAEMAISSAQRRMRAAKKVVRKKLT SGPALPGKLADCTAQGLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVK HFRALVKHGHVYVALPPLYRIDLGKEVYYALTEEEKEGVLEQLKRKKGKPNVQRFKGL GEMNPMQLRETTLDPNTRRLVQLTIDDEDDQRTDAMMDMLLAKKRSEDRRNWLQEKGD MAEIEV" misc_feature complement(3166654..3168528) /gene="parE" /locus_tag="SF3070" /note="DNA topoisomerase IV, B subunit, proteobacterial; Region: parE_Gneg; TIGR01055" /db_xref="CDD:130127" gene complement(3168560..3169141) /gene="yqiA" /locus_tag="SF3071" /db_xref="GeneID:1026678" CDS complement(3168560..3169141) /gene="yqiA" /locus_tag="SF3071" /note="Code: R; COG: COG3150" /codon_start=1 /transl_table=11 /product="esterase" /protein_id="NP_708842.1" /db_xref="GeneID:1026678" /translation="MSTLLYLHGFNSSPRSAKASLLKNWLAEHHPDVEMIIPQLPPYP SDAAELLESIVLEHGGDSLGIVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLDYRQAVAYYA SCRQTVIEGGNHAFTGFEDYFNPIVDFLGLHHL" misc_feature complement(3168572..3169141) /gene="yqiA" /locus_tag="SF3071" /note="esterase YqiA; Provisional; Region: PRK11071" /db_xref="CDD:182945" gene complement(3169141..3169968) /gene="icc" /locus_tag="SF3072" /db_xref="GeneID:1026679" CDS complement(3169141..3169968) /gene="icc" /locus_tag="SF3072" /note="Code: R; COG: COG1409" /codon_start=1 /transl_table=11 /product="cyclic 3',5'-adenosine monophosphate phosphodiesterase" /protein_id="NP_708843.1" /db_xref="GeneID:1026679" /translation="MESLLTLPLAGEARGRILQITDTHLFAQKHEALLGVNTWESYQA VLEAIRPHQHEFDLIVATGDLAQDQSSAAYQHFAEGIASFRAPCVWLPGNHDFQPAMY SALQDAGISPAKRVFIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERHTL LLLHHHPLPAGCSWLDQHSLRNAGELDTVLAKFPHVKYLLCGHIHQELDLDWNGRRLL ATPSTCVQFKPHCSNFTLDTIAPGWRTLELHADGTLTTEVHRLADTRFQPDTASEGY" misc_feature complement(3169144..3169968) /gene="icc" /locus_tag="SF3072" /note="cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional; Region: PRK11148" /db_xref="CDD:182997" misc_feature complement(order(3169294..3169296,3169354..3169356, 3169360..3169362,3169477..3169479,3169684..3169689, 3169768..3169770,3169777..3169779,3169897..3169899, 3169903..3169905)) /gene="icc" /locus_tag="SF3072" /note="active site" /db_xref="CDD:277347" misc_feature complement(order(3169354..3169356,3169360..3169362, 3169477..3169479,3169687..3169689,3169777..3169779, 3169897..3169899,3169903..3169905)) /gene="icc" /locus_tag="SF3072" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:277347" misc_feature complement(order(3169213..3169215,3169219..3169221, 3169228..3169230,3169315..3169317,3169321..3169329, 3169336..3169350,3169369..3169371,3169375..3169377, 3169456..3169461,3169465..3169467,3169732..3169734, 3169759..3169761,3169768..3169770,3169825..3169830, 3169837..3169842,3169849..3169851,3169858..3169860)) /gene="icc" /locus_tag="SF3072" /note="homohexamer interface [polypeptide binding]; other site" /db_xref="CDD:277347" gene complement(3169993..3170415) /gene="yqiB" /locus_tag="SF3073" /db_xref="GeneID:1026665" CDS complement(3169993..3170415) /gene="yqiB" /locus_tag="SF3073" /note="Code: S; COG: COG3151" /codon_start=1 /transl_table=11 /product="dehydrogenase" /protein_id="NP_708844.1" /db_xref="GeneID:1026665" /translation="MKRYTPDFPEMMRLCEMNFSQLRRLLPRNDAPGETVSYQVANAQ YRLTIVESTRYTTLVTIEQTAPAISYWSLPSMTVRLYHDAMVAEVCSSQQIFRFKARY DYPNKKLHQRDEKHQINQFLADWLRYCLAHGAMAIPVY" misc_feature complement(3169996..3170415) /gene="yqiB" /locus_tag="SF3073" /note="DUF1249 family protein; Region: PRK11039" /db_xref="CDD:182921" gene complement(3170416..3171045) /gene="nudF" /locus_tag="SF3074" /db_xref="GeneID:1026699" CDS complement(3170416..3171045) /gene="nudF" /locus_tag="SF3074" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="ADP-ribose pyrophosphatase" /protein_id="NP_708845.1" /db_xref="GeneID:1026699" /translation="MLKPDNLPVTFGKNDVEIIARETLYRGFFSLDLYRFRHRLFNGQ MSHEVRREIFERGHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEG ESVEDVARREAIEEAGLIVKRTKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLA DENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWLQLHHQALKNEWA" misc_feature complement(3170419..3171021) /gene="nudF" /locus_tag="SF3074" /note="ADP-ribose pyrophosphatase NudF; Provisional; Region: nudF; PRK10729" /db_xref="CDD:182682" gene 3171250..3172731 /gene="tolC" /locus_tag="SF3075" /db_xref="GeneID:1026668" CDS 3171250..3172731 /gene="tolC" /locus_tag="SF3075" /note="Code: MN; COG: COG1538" /codon_start=1 /transl_table=11 /product="outer membrane channel protein" /protein_id="NP_708846.2" /db_xref="GeneID:1026668" /translation="MKKLLPILIGLSLSGFSSLSQAENLMQVYQQARLSNPELRKSAA DRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNATSASLQLTQSIFDMSK WRALTLQEKAAGIQDVTYQTDQQTLILNTATAYFNVLNAIDVLSYTQAQKEAIYRQLD QTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEQLRQITGNYYPELAAL NVENFKTDKPQPVNALLKEAEKRNLSLLQARLSQDLEREQIRQAQDGHLPTLDLTAST GISDTSYSGSKTRGAAGTQYDDSNMGQNKVGLSFSLPIYQGGMVNSQVKQAQYNFVGA SEQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIV DVLDATTTLYNAKQELANARYNYLINQLNIKSALGTLNEQDLLALNNALSKPVSTNPE NVAPQTPEQNAIADGYAPDSPAPVVQQTSARTTTSNGHNPFRN" misc_feature 3171250..3172602 /gene="tolC" /locus_tag="SF3075" /note="outer membrane channel protein; Reviewed; Region: tolC; PRK09465" /db_xref="CDD:236529" gene 3172731..3172991 /gene="ygiA" /locus_tag="SF3076" /db_xref="GeneID:1023552" CDS 3172731..3172991 /gene="ygiA" /locus_tag="SF3076" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708847.1" /db_xref="GeneID:1023552" /translation="MTTTGLRPRLNVRQRKDTGYLPHSSPFSLQFRPAILYSDGYLPL VPEDKNETDKIHTPRIVPQKLERTPSDTSRSRGCHCFYAGWL" gene 3172846..3173550 /gene="ygiB" /locus_tag="SF3077" /db_xref="GeneID:1026662" CDS 3172846..3173550 /gene="ygiB" /locus_tag="SF3077" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708848.4" /db_xref="GeneID:1026662" /translation="MGIYHWSRKTKMKRTKSIRHASFRKNWSARHLTPVALAVATVFM LAGCEKSDETVSLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAE FGEGQCQQAPAQAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSS KNPASPAYGKYTDATGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQS TMQRSATGTSSRSMGG" misc_feature 3172879..3173547 /gene="ygiB" /locus_tag="SF3077" /note="DUF1190 family protein; Region: PRK11653" /db_xref="CDD:236948" gene 3173556..3174716 /gene="ygiC" /locus_tag="SF3078" /db_xref="GeneID:1026667" CDS 3173556..3174716 /gene="ygiC" /locus_tag="SF3078" /note="Code: E; COG: COG0754" /codon_start=1 /transl_table=11 /product="synthetase/amidase" /protein_id="NP_708849.1" /db_xref="GeneID:1026667" /translation="MERVSITERPDWREKAHEYGFNFHTMYGEPYWCEDAYYKLTLAQ VEKLEEVTAELHQMCLKVVEKVIASDELMTKFRIPKHTWSFVRQSWLTHQPSLYSRLD LAWDGTGEPKLLENNADTPTSLYEAAFFQWIWLEDQLNAGNLPEGSDQFNSLQEKLID RFVELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCATEAEIATEFLYIDEIGLGEKGQ FTDLQDQVISNLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM FPNHPNLLPAYFAEDDHPQMEKYVVKPIFSREGANVSIIENGKTIEAAEGPYGEEGMI VQQFHPLPKFGDSYMLIGSWLVNDQPAGIGIREDRALITQDMSRFYPHIFVE" misc_feature 3173556..3174713 /gene="ygiC" /locus_tag="SF3078" /note="Glutathionylspermidine synthase, CHAP domain [Amino acid transport and metabolism]; Region: Gsp; COG0754" /db_xref="CDD:440517" gene complement(3174754..3175569) /gene="ygiD" /locus_tag="SF3079" /db_xref="GeneID:1026654" CDS complement(3174754..3175569) /gene="ygiD" /locus_tag="SF3079" /note="Code: S; COG: COG3384" /codon_start=1 /transl_table=11 /product="LigB family dioxygenase" /protein_id="NP_708850.1" /db_xref="GeneID:1026654" /translation="MTPLVKDIIMSSTRMPALFLGHGSPMNVLEDNLYTRSWQKLGMT LPRPQAIVVVSAHWFTRGTGVTAMETPLTIHDFGGFPQALYDTHYPAPGSPALAQRLV ELLAPIPVTLDKEAWGFDHGSWGVLIKMYPDADIPMVQLSIDSSKPAAWHFEMGRKLA ALRDEGIMLVASGNVVHNLRTVKWHGDSSPYPWATSFNEYVKANLTWQGPVEQHPLVN YLDHEGGALSNPTPEHYLPLLYVLGVWDGQEPITIPVDGIEMGSLSMLSVQIG" misc_feature complement(order(3174781..3174786,3174868..3174870, 3175039..3175041,3175207..3175209,3175399..3175401, 3175498..3175506)) /gene="ygiD" /locus_tag="SF3079" /note="putative active site [active]" /db_xref="CDD:153375" misc_feature complement(order(3174868..3174870,3175399..3175401, 3175504..3175506)) /gene="ygiD" /locus_tag="SF3079" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:153375" misc_feature complement(3174757..3175494) /gene="ygiD" /locus_tag="SF3079" /note="LigB family dioxygenase; Provisional; Region: PRK10628" /db_xref="CDD:182598" gene 3175685..3176458 /gene="ygiE" /locus_tag="SF3080" /db_xref="GeneID:1026695" CDS 3175685..3176458 /gene="ygiE" /locus_tag="SF3080" /note="Code: P; COG: COG0428" /codon_start=1 /transl_table=11 /product="zinc transporter ZupT" /protein_id="NP_708851.2" /db_xref="GeneID:1026695" /translation="MSVPLILTILAGAATFIGAFLGVLGQKPSNRLLAFSLGFAAGIM LLISLMEMLPAALAAEGMSPVLGYGMFIFGLLGYFGLDRMLPHAHPQDLMQKSVQLLP KSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV YAATGSKRTAILWAGISGLAEILGGVLAWLILGSMISPVVMAAIMAAVAGIMVALSVD ELMPLAKEIDPNNNPSYGVLCGMSVMGFSLVLLQTAGIG" misc_feature 3175685..3176440 /gene="ygiE" /locus_tag="SF3080" /note="zinc transporter ZupT; Provisional; Region: PRK04201" /db_xref="CDD:235253" gene complement(3176516..3176710) /locus_tag="SF3080a" /db_xref="GeneID:16608359" CDS complement(3176516..3176710) /locus_tag="SF3080a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439283.1" /db_xref="GeneID:16608359" /translation="MLNIKGKRMFIAWYWIVLIALVVVGYFLHLKRYCRAFRQDRDAL LEARNKYLNSTREETAEKVE" gene complement(3176947..3177600) /gene="ribB" /locus_tag="SF3081" /db_xref="GeneID:1026655" CDS complement(3176947..3177600) /gene="ribB" /locus_tag="SF3081" /note="Code: H; COG: COG0108" /codon_start=1 /transl_table=11 /product="3,4-dihydroxy-2-butanone-4-phosphate synthase" /protein_id="NP_708852.1" /db_xref="GeneID:1026655" /translation="MNQTLLSSFGTPFERVENALAALREGRGVMVLDDEDRENEGDMI FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA EGVTTGVSAADRITTVRAAIADGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL MTLAGFKPAGVLCELTNDDGTMARAPECIEFANKHNMALVTIEDLVAYRQAHERKAS" misc_feature complement(3176968..3177570) /gene="ribB" /locus_tag="SF3081" /note="3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme transport and metabolism]; Region: RibB; COG0108" /db_xref="CDD:439878" gene 3177914..3178264 /locus_tag="SF3082" /db_xref="GeneID:1026698" CDS 3177914..3178264 /locus_tag="SF3082" /note="Code: S; COG: COG2960" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708853.1" /db_xref="GeneID:1026698" /translation="MTYPYRTTMVLNTYQYRETTMIDPKKIEQIARQVHESMPKGIRE FGEDVEKKIRQTLQAQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRISELENRSTE IKKQPDPETLPPTL" misc_feature 3177974..3178210 /locus_tag="SF3082" /note="Ubiquinone biosynthesis accessory factor UbiK [Coenzyme transport and metabolism]; Region: UbiK; COG2960" /db_xref="CDD:442200" mobile_element 3178429..3179689 /note="partial" /mobile_element_type="insertion sequence:IS2" gene 3178475..3178885 /locus_tag="SF3083" /db_xref="GeneID:1026669" CDS 3178475..3178885 /locus_tag="SF3083" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_708854.3" /db_xref="GeneID:1026669" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMKNELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 3178520..3178882 /locus_tag="SF3083" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 3178843..3179694 /locus_tag="SF3084" /db_xref="GeneID:1026645" CDS 3178843..3179694 /locus_tag="SF3084" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion element IS2 transposase InsD" /protein_id="NP_708855.1" /db_xref="GeneID:1026645" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPRG" misc_feature 3178843..3179688 /locus_tag="SF3084" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" mobile_element 3179690..3180457 /mobile_element_type="insertion sequence:IS1" gene 3179745..3180020 /gene="insA" /locus_tag="SF3085" /db_xref="GeneID:1026680" CDS 3179745..3180020 /gene="insA" /locus_tag="SF3085" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708856.1" /db_xref="GeneID:1026680" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 3179766..>3180017 /gene="insA" /locus_tag="SF3085" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3180047..3180442 /gene="insB" /locus_tag="SF3086" /db_xref="GeneID:1027391" CDS 3180047..3180442 /gene="insB" /locus_tag="SF3086" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708857.1" /db_xref="GeneID:1027391" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 3180050..3180439 /gene="insB" /locus_tag="SF3086" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" mobile_element 3180458..3180741 /note="partial" /mobile_element_type="insertion sequence:IS4" gene 3180748..3181071 /gene="yqiI" /locus_tag="SF3088" /pseudo /db_xref="GeneID:1026705" misc_feature 3180748..3181071 /gene="yqiI" /locus_tag="SF3088" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789427 (355 aa). BLAST with identity of 95% in 108 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(3181114..3181314) /gene="glgS" /locus_tag="SF3089" /db_xref="GeneID:1026658" CDS complement(3181114..3181314) /gene="glgS" /locus_tag="SF3089" /codon_start=1 /transl_table=11 /product="glycogen synthesis protein GlgS" /protein_id="NP_708859.2" /db_xref="GeneID:1026658" /translation="MEHSLNSLNNFDFLARSFARMHAEGRPVDILAVTGNMDEEHRTW FCARYAWYCQQMMQARELELEH" misc_feature complement(3181117..3181314) /gene="glgS" /locus_tag="SF3089" /note="Glycogen synthesis protein; Region: GlgS; pfam08971" /db_xref="CDD:401064" mobile_element 3181581..3182348 /mobile_element_type="insertion sequence:IS1" gene 3181636..3182333 /gene="insB" /locus_tag="SF3090" /pseudogene="unknown" /db_xref="GeneID:1026657" gene 3182349..3183258 /locus_tag="SF3091" /pseudo /db_xref="GeneID:1026717" misc_feature 3182349..3183258 /locus_tag="SF3091" /note="Similar to Escherichia coli K12 membrane protein gi: 1789430 (554 aa). BLAST with identity of 96% in 303 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(3184444..3185877) /locus_tag="SF3093" /db_xref="GeneID:1026686" CDS complement(3184444..3185877) /locus_tag="SF3093" /note="Code: M; COG: COG2870" /codon_start=1 /transl_table=11 /product="bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase" /protein_id="NP_708862.1" /db_xref="GeneID:1026686" /translation="MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVN TIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHP TITKLRVLSRNQQLIRLDFEEGFEGVDPQPMHERINQALSSIGALVLSDYAKGALASV QQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMK LIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA GNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAA ARKRGEKVVMTNGVFDILHAGHVFYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNP LEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANG GEVLVLNFEDGCSTTNIIKKIQQDKKG" misc_feature complement(3184459..3185877) /locus_tag="SF3093" /note="bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE; Region: PRK11316" /db_xref="CDD:183085" gene complement(3185925..3188765) /gene="glnE" /locus_tag="SF3094" /db_xref="GeneID:1026840" CDS complement(3185925..3188765) /gene="glnE" /locus_tag="SF3094" /note="Code: OT; COG: COG1391" /codon_start=1 /transl_table=11 /product="bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase" /protein_id="NP_708863.2" /db_xref="GeneID:1026840" /translation="MKPLSSPLQQYWQTVVERLPELLAEESLSAQAKSVLTFSDFVQD SVIAHPEWLTELESQPPQADEWQHYSVWLQEALSNVSDEAGLMRELRLFRRRIMVRIA WAQTLALVTEESILQQLSYLAETLIVAARDWLYDACCREWGTPCNAQGEAQPLLILGM GKLGGGELNFSSDIDLIFAWPEHGCTQGGRRELDNAQFFTRMGQRLIKVLDQPTQDGF VYRVDMRLRPFGESGPLVLSFAALEDYYQEQGRDWERYAMVKARIMGDSEGVYANELR AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLTDNIKLGAGGIREIEFIVQVFQ LIRGGREPLLQSRSLLPTLSAIAALHLLSENDAEQLRVAYLFLRRLENLLQSINDEQT QTLPSDELNRARLAWAMDFADWPQLTGALTAHMTNVRRVFNELIGDDESETQEESLSE QWRELWQDALQEDDTTPVLAHLSEDDRKQVLTMIADFRKELDKRTIGPRGRQVLDHLM PHLLSDVCAREDAAVTLSRITALLVGIVTRTTYLELLSEFPAALKHLISLCAASPMIA SQLARYPLLLDELLDPNTLYQPTATDAYRDELRQYLLRVPEDDEEQQLEALRQFKQAQ LLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWGQMVARYGKPNHLNEREGRG FAVVGYGKLGGWELGYSSDLDLIFLHDCPMDAMTDGEREIDGRQFYLRLAQRIMHLFS TRTSSGILYEVDARLRPSGAAGMLVTSAEAFADYQKNEAWTWEHQALVRARVVYGDPQ LTAHFDAVRREIMTLPREGKTLQTEVREMREKMRAHLGNKHRNRFDIKADEGGITDIE FITQYLVLRYAHEKPKLTRWSDNVRILELLAQNDIMEEQEAMALTRAYTTLRDELHHL ALQELPGHVSEDCFTAERDLVRASWQKWLVEE" misc_feature complement(3185934..3188765) /gene="glnE" /locus_tag="SF3094" /note="bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase; Region: PRK11072" /db_xref="CDD:236836" gene complement(3188788..3190089) /gene="ygiF" /locus_tag="SF3095" /db_xref="GeneID:1026707" CDS complement(3188788..3190089) /gene="ygiF" /locus_tag="SF3095" /note="Code: S; COG: COG3025" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708864.1" /db_xref="GeneID:1026707" /translation="MAQEIELKFIVNHSAVEALRDHLNTLGGEHHDPVQLLNIYYETP DNWLRRHDMGLRIRGENGRYEMTMKVAGRVTGGLHQRPEYNVALSEPTLDLAQLPTEI WPNGELPADLASRVQSLFSTDFYREKWLVEIDGSRIEIALDQGEVKAGEFAEPICELE LELLSGDTRAVLKLANQLVSQTGLRQGSLSKAARGYHLAQGNPAREIKPTTILHVAAK ADVEQGLEAALELVLAQWQYHEELWVRGNDAAKEQVLAAISLVRHTLMLFGGIVPRKA STHLRDLLTQCEATIASAVSAVTAVYSTETAMAKLALTEWLVSKAWQPFLDAKAQGKI SDSFKRFADIHLSRHAAELKSVFCQPLGDRYRDQLPRLMRDIDSILLLAGYYDPVVAQ AWLENWQGLRHAIATGQRIEIEHFRNEANNQEPFWLHSGKR" misc_feature complement(3189316..3190089) /gene="ygiF" /locus_tag="SF3095" /note="Inorganic triphosphatase YgiF, contains CYTH and CHAD domains [Inorganic ion transport and metabolism]; Region: PPPi; COG3025" /db_xref="CDD:442261" gene 3190331..3190951 /gene="ygiM" /locus_tag="SF3096" /db_xref="GeneID:1026697" CDS 3190331..3190951 /gene="ygiM" /locus_tag="SF3096" /note="Code: T; COG: COG3103" /codon_start=1 /transl_table=11 /product="SH3 domain-containing protein" /protein_id="NP_708865.1" /db_xref="GeneID:1026697" /translation="MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDHY RLVGTVNAGEEVTLLQTDANTNYAQVKDSSGRTAWIPLKQLSTEPSLRSRVPDLENQV KTLTDKLTNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVDAASV QLDDKQRTIIMQWFMYGGGVLGLGLLLGLVLPHLIPSRKRKDRWMN" misc_feature 3190331..3190948 /gene="ygiM" /locus_tag="SF3096" /note="SH3 domain-containing protein; Provisional; Region: PRK10884" /db_xref="CDD:182809" gene 3191015..3192253 /gene="cca" /locus_tag="SF3097" /db_xref="GeneID:1026690" CDS 3191015..3192253 /gene="cca" /locus_tag="SF3097" /note="Code: J; COG: COG0617" /codon_start=1 /transl_table=11 /product="multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase" /protein_id="NP_708866.1" /db_xref="GeneID:1026690" /translation="MKIYLVGGAVRDALLGLSVKDRDWVVVGSTPQEMLDAGYQQVGR DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYTAPDVTLEDDLKRRDLTINALAQDD NGEIIDPYNGLGDLQNRLLRHVSPAFGEDPLRVLRVARFAARYAHLGFRIADETLTLM REMTHAGELEHLTPERVWKETESALTTRNPQVFFQVLRDCGALRVLFPEIDALFGVPA PARWHPEIDTGIHTLMTLSMAAMLSPQVDVRFATLCHDLGKGLTPPELWPRHHGHGPA GVKLVEQLCQRLRVPNEIRDLARLVAEFHDLIRTFPMLNPKTIVKLFDSIDAWRKPQR VEQLALTSEADVRGRTGFESADYPQGRWLREGWEVAQSVPTKAVVEAGFKGVEIREEL TRRRIAAVASWKEQRCPKPD" misc_feature 3191015..3192241 /gene="cca" /locus_tag="SF3097" /note="multifunctional CCA addition/repair protein; Region: cca; PRK10885" /db_xref="CDD:182810" gene complement(3192416..3193237) /gene="uppP" /locus_tag="SF3098" /db_xref="GeneID:1026703" CDS complement(3192416..3193237) /gene="uppP" /locus_tag="SF3098" /note="Code: S; COG: COG1968" /codon_start=1 /transl_table=11 /product="undecaprenyl pyrophosphate phosphatase" /protein_id="NP_708867.2" /db_xref="GeneID:1026703" /translation="MSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGDT AKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQHEGESKGRLTLIHILLGMIPA VVLGLLFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFMI GCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATALDLYKSWGF LTTGDIPMFAVGFITAFVVALIAIKTFLQLIKRISFIPFAIYRFIVAAAVYVVFF" misc_feature complement(3192419..3193231) /gene="uppP" /locus_tag="SF3098" /note="undecaprenyl-diphosphate phosphatase; Region: PRK00281" /db_xref="CDD:234712" gene complement(3193328..3193696) /gene="folB" /locus_tag="SF3099" /db_xref="GeneID:1026693" CDS complement(3193328..3193696) /gene="folB" /locus_tag="SF3099" /note="Code: H; COG: COG1539" /codon_start=1 /transl_table=11 /product="bifunctional dihydroneopterin aldolase/dihydroneopterin triphosphate 2'-epimerase" /protein_id="NP_708868.2" /db_xref="GeneID:1026693" /translation="MDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKAAKS DDVADCLSYADIAETVVSHVEGARFALVERVAEEVAELLLARFNSPWVRIKLSKPGAV ARAANVGVIIERGNNLKENN" misc_feature complement(3193340..3193696) /gene="folB" /locus_tag="SF3099" /note="bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase; Region: folB; PRK11593" /db_xref="CDD:183219" misc_feature complement(order(3193361..3193387,3193394..3193399, 3193619..3193645,3193661..3193693)) /gene="folB" /locus_tag="SF3099" /note="homooctamer interface [polypeptide binding]; other site" /db_xref="CDD:238298" misc_feature complement(order(3193367..3193369,3193403..3193405, 3193478..3193489,3193634..3193636,3193643..3193651)) /gene="folB" /locus_tag="SF3099" /note="active site" /db_xref="CDD:238298" gene 3193801..3194418 /gene="ygiH" /locus_tag="SF3100" /db_xref="GeneID:1026683" CDS 3193801..3194418 /gene="ygiH" /locus_tag="SF3100" /note="Code: S; COG: COG0344" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate acyltransferase PlsY" /protein_id="NP_708869.1" /db_xref="GeneID:1026683" /translation="MSAIAPGMILIAYLCGSISSAILVCRLCGLPDPRTSGSGNPGAT NVLRIGGKGAAVAVLIFDVLKGMLPVWGAYELGVSPFWLGLIAIAACLGHIWPVFFGF KGGKGVATAFGAIAPISWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKFKRKREKDPE" misc_feature 3193801..3194388 /gene="ygiH" /locus_tag="SF3100" /note="glycerol-3-phosphate 1-O-acyltransferase PlsY; Region: PRK00220" /db_xref="CDD:234691" gene complement(3194361..3195362) /gene="ygiP" /locus_tag="SF3101" /db_xref="GeneID:1026706" CDS complement(3194361..3195362) /gene="ygiP" /locus_tag="SF3101" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="transcriptional activator TtdR" /protein_id="NP_708870.1" /db_xref="GeneID:1026706" /translation="MLNSWPLAKDLQVLVEIVHSGSFSAAAATLGQTPAFVTKRIQIL ENTLATTLLNRSARGVALTESGQRCYEHALEILTQYQRLVDDVTQIKTRPEGMIRIGC SFGFGRSHIAPAITELMRNYPELQVHFELFDRQIDLVQDNIDLDIRINDEIPDYYIAH LLTKNKRILCAAPEYLQKYPQPQSLQELSRHDCLVTKERDMTHGIWELGNGQEKKSVK VSGHLSSNSGEIVLQWALEGKGIMLRSEWDVLPFLESGKLVQVLPEYAQSANIWAVYR ELLYRSMKFVSARNFWRHGASNGWASPMKAIRSCRSTRNHSGSFSRFLLNFVQIFVS" misc_feature complement(3194433..3195362) /gene="ygiP" /locus_tag="SF3101" /note="LysR family transcriptional regulator; Region: PRK09801" /db_xref="CDD:182085" gene 3195572..3196381 /gene="ttdA" /locus_tag="SF3102" /db_xref="GeneID:1026711" CDS 3195572..3196381 /gene="ttdA" /locus_tag="SF3102" /note="Code: C; COG: COG1951" /codon_start=1 /transl_table=11 /product="tartrate dehydratase subunit alpha" /protein_id="NP_708871.2" /db_xref="GeneID:1026711" /translation="MSESNKQQAVNKLTEIVANFTAMISTRMPDDVVDKLKQLKDAET SSMGKIIYHTMFDNMQKAIDLNRPACQDTGEIMFFVKVGSRFPLLGELQSILKQAVEE ATVKAPLRHNAVEIFDEVNTGKNTGSGVPWVTWDIIPDNDDAEIEVYMAGGGCTLPGR SKVLMPSEGYEGVVKFVFENISTLAVNACPPVLVGVGIATSVETAAVLSRKAILRPIG SRHPNPKAAELELRLEEGLNRLGIGPQGLTGNSSVMGASSRHAAGSCRSHL" misc_feature 3195584..3196375 /gene="ttdA" /locus_tag="SF3102" /note="tartrate dehydratase subunit alpha; Validated; Region: PRK08230" /db_xref="CDD:181309" gene 3196409..3197014 /gene="ttdB" /locus_tag="SF3103" /db_xref="GeneID:1023469" CDS 3196409..3197014 /gene="ttdB" /locus_tag="SF3103" /note="Code: C; COG: COG1838" /codon_start=1 /transl_table=11 /product="L(+)-tartrate dehydratase subunit beta" /protein_id="NP_708872.1" /db_xref="GeneID:1023469" /translation="MKKILTTPIKAEDLQDIRVGDVIYLTGTLVTCRDVCHRRLIELK RPIPYDLNGKAIFHAGPIVRKNGDKWEMVSVGPTTSMRMESFEREFIEQTGVKLVVGK GGMGPLTEEGCQKFKALHVIFPAGCAVLAATQVEEIEEVHWTELGMPESLWVCRVKEF GPLIVSIDTHGNNLIAENKKLFAERRDPIVEEICEHVHYIK" misc_feature 3196409..3197011 /gene="ttdB" /locus_tag="SF3103" /note="L(+)-tartrate dehydratase subunit beta; Validated; Region: PRK08228" /db_xref="CDD:236192" gene 3197062..3198525 /gene="ygjE" /locus_tag="SF3104" /db_xref="GeneID:1026696" CDS 3197062..3198525 /gene="ygjE" /locus_tag="SF3104" /note="Code: P; COG: COG0471" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708873.1" /db_xref="GeneID:1026696" /translation="MKPSTEWWRYLAPLAVIAIIALLPVPAGLENHTWLYFAVFTGVI VGLILEPVPGAVVAMVGISIIAILSPWLLFSPEQLAQPGFKFTAKSLSWAVSGFSNSV IWLIFAAFMFGTGYEKTGLGRRIALILVKKMGHRTLFLGYAVMFSELILAPVTPSNSA RGAGIIYPIIRNLPPLYQSQPNDSSSRSIGSYIMWMGIVADCVTSAIFLTAMAPNLLL IGLMKSASHATLSWGDWFLGMLPLSILLVLLVPWLAYVLYPPVLKSGDQVPRWAETEL QAMGPLCSREKRMLGLMVGALVLWIFGGDYIDAAMVGYSVVALMLLLRIISWDDIVSN KAAWNVFFWLASLITLATGLNNTGFISWFGKLLAGSLSGYSPTMVMVTLIVVFYLLRY FFASATAYTCALAPMMIAAALAMPEIPLPVFCLMVGAAIGLGSILTPYATGPSPIYYG SGYLPTADYWRLGAIFGLIFLVLLVITGLLWMPVVLL" misc_feature 3197071..3198522 /gene="ygjE" /locus_tag="SF3104" /note="Sodium:sulfate symporter transmembrane region; Region: Na_sulph_symp; pfam00939" /db_xref="CDD:279307" misc_feature order(3197359..3197412,3197482..3197526,3197530..3197535, 3197539..3197550,3197554..3197571,3197578..3197601, 3197617..3197622,3197641..3197658,3197659..3197703, 3197767..3197769,3197770..3197808,3197821..3197838, 3197929..3197949,3197971..3198000,3198007..3198021, 3198067..3198123,3198196..3198243,3198298..3198327, 3198334..3198363,3198451..3198489) /gene="ygjE" /locus_tag="SF3104" /note="transmembrane helices; other site" /db_xref="CDD:238535" gene complement(3198567..3199580) /gene="ygjD" /locus_tag="SF3105" /db_xref="GeneID:1026694" CDS complement(3198567..3199580) /gene="ygjD" /locus_tag="SF3105" /note="Code: O; COG: COG0533" /codon_start=1 /transl_table=11 /product="UGMP family protein" /protein_id="NP_708874.1" /db_xref="GeneID:1026694" /translation="MRVLGIETSCDETGIAIYDDEKGLLANQLYSQVKLHADYGGVVP ELASRDHVRKTVPLIQAALKESGLTAKDIDAVAYTAGPGLVGALLVGATVGRSLAFAW NVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD AAGEAFDKTAKLLGLDYPGGPLLSKMAAQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA ANTIRDNGTDDQTRADIARAFEDAVVDTLMIKCKRALDQTGFKRLVMAGGVSANRTLR AKLAEMMKKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGATADLGVSVRPRWPLAEL PAA" misc_feature complement(3198588..3199580) /gene="ygjD" /locus_tag="SF3105" /note="tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]; Region: TsaD; COG0533" /db_xref="CDD:440299" gene 3199818..3200033 /gene="rpsU" /locus_tag="SF3106" /db_xref="GeneID:1027192" CDS 3199818..3200033 /gene="rpsU" /locus_tag="SF3106" /note="Code: J; COG: COG0828" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S21" /protein_id="NP_708875.1" /db_xref="GeneID:1027192" /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE RKRAKASAVKRHAKKLARENARRTRLY" misc_feature 3199818..3200003 /gene="rpsU" /locus_tag="SF3106" /note="Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Region: RpsU; COG0828" /db_xref="CDD:440590" gene 3200144..3201889 /gene="dnaG" /locus_tag="SF3107" /db_xref="GeneID:1026671" CDS 3200144..3201889 /gene="dnaG" /locus_tag="SF3107" /note="Code: L; COG: COG0358" /codon_start=1 /transl_table=11 /product="DNA primase" /protein_id="NP_708876.1" /db_xref="GeneID:1026671" /translation="MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHN EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAG SGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGF APPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGF GGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQY GINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQ LRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLS TLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTT MRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYR GTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNE ERLELWTLNQELAKK" misc_feature 3200153..3201418 /gene="dnaG" /locus_tag="SF3107" /note="DNA primase (bacterial type) [Replication, recombination and repair]; Region: DnaG; COG0358" /db_xref="CDD:440127" misc_feature 3201494..3201868 /gene="dnaG" /locus_tag="SF3107" /note="DNA primase DnaG DnaB-binding; Region: DnaG_DnaB_bind; smart00766" /db_xref="CDD:197866" gene 3202084..3203925 /gene="rpoD" /locus_tag="SF3108" /db_xref="GeneID:1026692" CDS 3202084..3203925 /gene="rpoD" /locus_tag="SF3108" /note="Code: K; COG: COG0568" /codon_start=1 /transl_table=11 /product="RNA polymerase sigma factor RpoD" /protein_id="NP_708877.1" /db_xref="GeneID:1026692" /translation="MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDI IQMINDMGIQVMEEAPDADDLMLAENTADEDAAEAAAQVLSSVESEIGRTTDPVRMYM REMGTVELLTREGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSD LITGFVDPNAEEDLAPTATHVGSELSQEDLDDDEDEDEEDGDDDSADDDNSIDPELAR EKFAELRAQYVVTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVM MDRVRTQERLIMKLCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVS EEVHRALQKLQQIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAK KYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTI RIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISME TPIGDDEDSHLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGID MNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD" misc_feature 3202084..3203922 /gene="rpoD" /locus_tag="SF3108" /note="RNA polymerase sigma factor RpoD; Validated; Region: PRK05658" /db_xref="CDD:235549" mobile_element 3203996..3205423 /mobile_element_type="insertion sequence:IS4" gene 3204063..3205409 /locus_tag="SF3109" /db_xref="GeneID:1026674" CDS 3204063..3205409 /locus_tag="SF3109" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_708878.1" /db_xref="GeneID:1026674" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIGQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLSKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature 3204153..3205151 /locus_tag="SF3109" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene complement(3205441..3205947) /gene="ygjF" /locus_tag="SF3110" /pseudo /db_xref="GeneID:1027193" misc_feature complement(3205441..3205947) /gene="ygjF" /locus_tag="SF3110" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789449 (169 aa). BLAST with identity of 99% in 168 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene 3206072..3206147 /locus_tag="SF4508" /db_xref="GeneID:3161849" tRNA 3206072..3206147 /locus_tag="SF4508" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161849" gene complement(3206201..3206946) /gene="yqjH" /locus_tag="SF3111" /pseudo /db_xref="GeneID:1026681" misc_feature complement(3206201..3206946) /gene="yqjH" /locus_tag="SF3111" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789450 (255 aa). BLAST with identity of 99% in 248 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 3207223..3207846 /gene="yqjI" /locus_tag="SF3112" /db_xref="GeneID:1023574" CDS 3207223..3207846 /gene="yqjI" /locus_tag="SF3112" /note="Code: K; COG: COG1695" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708879.1" /db_xref="GeneID:1023574" /translation="MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCG GRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYP TLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQ NPQMKRALDNFKAVLDLRVNQSDISDAQIKKIIAVIDRAAFDITQLD" misc_feature 3207400..3207675 /gene="yqjI" /locus_tag="SF3112" /note="DNA-binding transcriptional regulator, PadR family [Transcription]; Region: PadR; COG1695" /db_xref="CDD:441301" gene complement(3208000..3209520) /gene="aer" /locus_tag="SF3113" /pseudo /db_xref="GeneID:1027194" misc_feature complement(3208000..3209520) /gene="aer" /locus_tag="SF3113" /note="'Similar to Escherichia coli K12 aerotaxis sensor receptor, flavoprotein gi: 1789453 (507 aa). BLAST with identity of 98% in 506 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene 3210028..3211317 /gene="ygjG" /locus_tag="SF3114" /db_xref="GeneID:1027200" CDS 3210028..3211317 /gene="ygjG" /locus_tag="SF3114" /note="Code: E; COG: COG0160" /codon_start=1 /transl_table=11 /product="ornithine aminotransferase" /protein_id="NP_708880.4" /db_xref="GeneID:1027200" /translation="MKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGGLN TLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKT LAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGVFHGKSLGALSA TAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVIL PPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGV MPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGD MLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNA KTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEEA" misc_feature 3210028..3211284 /gene="ygjG" /locus_tag="SF3114" /note="putrescine aminotransferase; Region: putres_am_tran; TIGR03372" /db_xref="CDD:132415" gene 3211908..3212891 /gene="ebgR" /locus_tag="SF3115" /db_xref="GeneID:1027203" CDS 3211908..3212891 /gene="ebgR" /locus_tag="SF3115" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor EbgR" /protein_id="NP_708881.2" /db_xref="GeneID:1027203" /translation="MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEK LEYKTSSARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLAIELTN CYEHNGLPDIKNVTGILIVGKPTPALRAAASALTDNICFIDFHEPGSGYDAVDIDLAR ISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSS SSGYELAKQMLAREDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTAR FTFPPLSTVRIHSEMMGSQGVNLVYEKARDGRALPLLVFVPSKLKLRGTTR" misc_feature 3211908..3212888 /gene="ebgR" /locus_tag="SF3115" /note="DNA-binding transcriptional repressor EbgR; Provisional; Region: PRK10339" /db_xref="CDD:182389" gene 3213074..3216160 /gene="ebgA" /locus_tag="SF3116" /db_xref="GeneID:1026724" CDS 3213074..3216160 /gene="ebgA" /locus_tag="SF3116" /note="Code: G; COG: COG3250" /codon_start=1 /transl_table=11 /product="cryptic beta-D-galactosidase subunit alpha" /protein_id="NP_708882.1" /db_xref="GeneID:1026724" /translation="MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPL SSQWNFHFFDHPLQVPEAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVP FVPSDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEF DISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRT DFDEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASF AFTVEQPQQWSAESPYLYHLVMTLKDANGNVLEVVPQRVGFRDIKVRDGLFWINNRYV MLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCDIYGL FVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNES GYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPR IICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDHGNVWYKFGGD YGDYPNNYNFCLDGLIYSDQTPGSGLKEYKQVIAPVKIHALTRGELKVENKLWFTTLD DYTLHAEVRAEGETLATQQIKLRDVAPNSEAPLQITLPQLDAREAFLNITVTKDSRTR YSEAGHSIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKMSG KPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQSD GEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFTMG INGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRWTA LTNRHGNGLLVVPQRPINFSAWHYTQENIHAAQHCNELQRSDDITLNLDHQLLGLGSN SWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFFSTNLHSENKQ" misc_feature 3213074..3216130 /gene="ebgA" /locus_tag="SF3116" /note="cryptic beta-D-galactosidase subunit alpha; Reviewed; Region: ebgA; PRK10340" /db_xref="CDD:236673" gene 3216157..3216606 /gene="ebgC" /locus_tag="SF3117" /db_xref="GeneID:1027199" CDS 3216157..3216606 /gene="ebgC" /locus_tag="SF3117" /note="Code: S; COG: COG2731" /codon_start=1 /transl_table=11 /product="cryptic beta-D-galactosidase subunit beta" /protein_id="NP_708883.1" /db_xref="GeneID:1027199" /translation="MRIIDNLEQFRQIYASGKKWQRCVEAIENIDNIQPGVAHSIGDS LTYRVENDSATDALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLK GCGETVEVHEGQIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK" misc_feature 3216157..3216603 /gene="ebgC" /locus_tag="SF3117" /note="beta-galactosidase subunit beta; Region: ebgC; PRK10202" /db_xref="CDD:182302" gene 3216669..3218102 /gene="ygjI" /locus_tag="SF3118" /db_xref="GeneID:1026721" CDS 3216669..3218102 /gene="ygjI" /locus_tag="SF3118" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_708884.1" /db_xref="GeneID:1026721" /translation="MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFF LATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTS LLPRVIAYASYAFLGYEYIMTPVATTVISMVLFAFSTWVSTNGAKMLGPITSVTSTLM LLLTLSYILLAGTALVGGVQPADPITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVY VNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAY FGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPA RAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLD HLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFA WWKYSKYIKGLTAEERHIEATPASNVD" misc_feature 3216669..3218045 /gene="ygjI" /locus_tag="SF3118" /note="Amino acid permease; Region: AA_permease_2; cl45918" /db_xref="CDD:459263" gene 3218236..3219307 /gene="ygjJ" /locus_tag="SF3119" /pseudo /db_xref="GeneID:1026227" misc_feature 3218236..3219307 /gene="ygjJ" /locus_tag="SF3119" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789461 (357 aa). BLAST with identity of 97% in 357 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 3219324..3221675 /gene="ygjK" /locus_tag="SF3120" /db_xref="GeneID:1024277" CDS 3219324..3221675 /gene="ygjK" /locus_tag="SF3120" /codon_start=1 /transl_table=11 /product="alpha-glucosidase" /protein_id="NP_708885.1" /db_xref="GeneID:1024277" /translation="MKIKTILTPVTCALLISFSAHAANADNYKNVINRTGAPQYMKDY DYDDHQRFNPFFDLGAWHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQD GKKVNFTLEAYSIPGALVQKLTAKDVQVEMTLRFATPRTSLLETKIISNKPLDLVWDG ELLEKLEAKEGKPLSDKTIAGEYPDYQRKISATRDGLKVTFGKVRATWDLLTSGESEY QVHKSLPVQTEINGNRFTSKAHINGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAF YLTASQQRWEEYLKKGLTNPDATPEQTRVAVKAIETLNGNWRSPGGAVNYNTVTPSVT GRWFSGNQTWPWDTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDSVRPQDVGFVPDL IAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKAWLAEMYPKLVAYHDWWL RNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGDKEETQSGLNNYARVVEKGQYDS LEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVANGGKRSDWTVKFAENRSQDGTLLG YSLLQESVDQASYMYSDNHYLAEMATILGKPEEAKRYRQLAQQLADYINTCMFDPTTQ FYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFN TFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAK GLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQ" misc_feature 3219324..3221669 /gene="ygjK" /locus_tag="SF3120" /note="alpha-glucosidase; Provisional; Region: PRK10137" /db_xref="CDD:236653" gene 3221901..3223919 /gene="ygjL" /locus_tag="SF3121" /db_xref="GeneID:1026687" CDS 3221901..3223919 /gene="ygjL" /locus_tag="SF3121" /codon_start=1 /transl_table=11 /product="NADPH dehydrogenase" /protein_id="NP_708886.1" /db_xref="GeneID:1026687" /translation="MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFY AERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQI LHTGRYSYQPHLVAPSALQAPINRFVPHELTHEEILQLIDDFARCAQLAREAGYDGVE VMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRTVRERVGNDFIIIYRLSM LDLVEGGGTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKL KGHVSLPLVTTNRINDPQVADDILSRGDADIVSMARPFLADAELLSKAQSGRADEINT CIGCNQGCLDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFAIN AAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT ADQLQAFDETILASGIVPRVPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGF DTAMYLSQPGESTSQNIARFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKAS KPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVIC AGQEPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI" misc_feature 3221916..3222974 /gene="ygjL" /locus_tag="SF3121" /note="2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the...; Region: DCR_FMN; cd02930" /db_xref="CDD:239240" misc_feature order(3221973..3221975,3221979..3221981,3222075..3222077, 3222201..3222203,3222393..3222395,3222399..3222401, 3222426..3222428,3222543..3222545,3222657..3222659, 3222666..3222668,3222831..3222836,3222903..3222905, 3222912..3222914,3222924..3222926,3222960..3222962) /gene="ygjL" /locus_tag="SF3121" /note="active site" /db_xref="CDD:239240" misc_feature order(3221973..3221975,3221979..3221981,3222075..3222077, 3222201..3222203,3222543..3222545,3222831..3222836) /gene="ygjL" /locus_tag="SF3121" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:239240" misc_feature order(3222393..3222395,3222399..3222401,3222426..3222428, 3222657..3222659,3222666..3222668) /gene="ygjL" /locus_tag="SF3121" /note="2,4-decadienoyl-CoA binding site; other site" /db_xref="CDD:239240" misc_feature 3222399..3222401 /gene="ygjL" /locus_tag="SF3121" /note="catalytic residue [active]" /db_xref="CDD:239240" misc_feature order(3222903..3222905,3222912..3222914,3222924..3222926, 3222960..3222962) /gene="ygjL" /locus_tag="SF3121" /note="4Fe-4S cluster binding site [ion binding]; other site" /db_xref="CDD:239240" misc_feature <3222984..>3223436 /gene="ygjL" /locus_tag="SF3121" /note="NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; Region: GltD; COG0493" /db_xref="CDD:440259" misc_feature 3223095..>3223856 /gene="ygjL" /locus_tag="SF3121" /note="NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism]; Region: FadH2; COG0446" /db_xref="CDD:440215" gene complement(3223964..3224380) /gene="ygjM" /locus_tag="SF3122" /db_xref="GeneID:1026701" CDS complement(3223964..3224380) /gene="ygjM" /locus_tag="SF3122" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708887.1" /db_xref="GeneID:1026701" /translation="MIAIADILQAGEKLTAVAPFLAGIQNEEQYTQALELVDHLLLND PENPLLDLVCAKITAWEESAPEFAEFNAMAQAMPGGIAVIRTLMDQYGLTLSDLPEIG SKSMVSRVLSGKRKLTLEHAKKLATRFGISPALFID" misc_feature complement(3223967..3224347) /gene="ygjM" /locus_tag="SF3122" /note="Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain [Defense mechanisms]; Region: HigA; COG5499" /db_xref="CDD:444250" gene complement(3224377..3224691) /gene="ygjN" /locus_tag="SF3123" /db_xref="GeneID:1026710" CDS complement(3224377..3224691) /gene="ygjN" /locus_tag="SF3123" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708888.2" /db_xref="GeneID:1026710" /translation="MHLITQKALKDAAEKYPQHKTELVALGNTIAKGYFKKPESLKAV FPSLDNFKYLDKHYVFNVGGNELRVVAMVFFESQKCYIREVMTHKEYDFFTAVHRTKG KK" misc_feature complement(3224416..3224688) /gene="ygjN" /locus_tag="SF3123" /note="mRNA-degrading endonuclease (mRNA interferase) HigB, toxic component of the HigAB toxin-antitoxin module [Translation, ribosomal structure and biogenesis, Defense mechanisms]; Region: HigB; COG4680" /db_xref="CDD:443716" gene complement(3224976..3226112) /gene="ygjO" /locus_tag="SF3124" /db_xref="GeneID:1026843" CDS complement(3224976..3226112) /gene="ygjO" /locus_tag="SF3124" /note="Code: J; COG: COG2813" /codon_start=1 /transl_table=11 /product="SAM-dependent 23S ribosomal RNA mG1835 methyltransferase" /protein_id="NP_708889.1" /db_xref="GeneID:1026843" /translation="MSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEI LGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGIDESSVKFLDSTAD YPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLG PTTTTLAWKKARLINCTFNEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGAR FFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNM PEALDRSEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHYARRCLKING ELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR" misc_feature complement(3224979..3226112) /gene="ygjO" /locus_tag="SF3124" /note="23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG; Region: PRK15001" /db_xref="CDD:184963" gene 3226161..3226700 /gene="ygjP" /locus_tag="SF3125" /db_xref="GeneID:1027201" CDS 3226161..3226700 /gene="ygjP" /locus_tag="SF3125" /note="Code: R; COG: COG1451" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708890.1" /db_xref="GeneID:1027201" /translation="MSIPFFSFSWAVMSNLTYLQGYPEQLLSQVRTLINEQRLGDVLA KRYPGTHDYATDKALWQYTQDLKNQFLRNAPPINKVMYDNKIHVLKNALGLHTAVSRV QGSKLKAKAEIRVATVFRNAPEPFLRMIVVHELAHLKEKEHNKAFYQLCCHMEPQYHQ LEFDTRLWLTQLSLGQDKI" misc_feature <3226524..3226676 /gene="ygjP" /locus_tag="SF3125" /note="Peptidase M48 YhfN-like, a novel minigluzincin; Region: M48_yhfN_like; cd07344" /db_xref="CDD:320703" misc_feature order(3226557..3226562,3226569..3226571,3226587..3226589) /gene="ygjP" /locus_tag="SF3125" /note="active site" /db_xref="CDD:320703" misc_feature order(3226557..3226559,3226569..3226571,3226587..3226589) /gene="ygjP" /locus_tag="SF3125" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:320703" gene 3226777..3227469 /gene="ygjQ" /locus_tag="SF3126" /db_xref="GeneID:1027197" CDS 3226777..3227469 /gene="ygjQ" /locus_tag="SF3126" /note="Code: S; COG: COG2949" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708891.1" /db_xref="GeneID:1027197" /translation="MLRAFARLLLRICFSRRTLKIACLLLLVAGATIFIADRVMVNAS KQLTWGDVNAVPARNVGLLLGARPGNRYFTRRIDTAAALYHAGKVKWLLVSGDNGRKN YDEASGMQQALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRT IWLAKQYGIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHRQPKYLGPSVMI GPFSEHGCPAKE" misc_feature 3226822..3227430 /gene="ygjQ" /locus_tag="SF3126" /note="Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin [Cell wall/membrane/envelope biogenesis]; Region: SanA; COG2949" /db_xref="CDD:442192" gene 3227530..3228546 /gene="ygjR" /locus_tag="SF3127" /db_xref="GeneID:1026708" CDS 3227530..3228546 /gene="ygjR" /locus_tag="SF3127" /note="Code: R; COG: COG0673" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708892.1" /db_xref="GeneID:1026708" /translation="MEYPRVMIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQ AQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNSLHFSQTQLFLSHKIHVICEKPL ASNLAEVDAAIACARENQVVLFEAFKTACLPNFHLLRQALPKAGKLRKVFFNYCQYSS RYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAH GVVVMDYGDFSVTLQHSKVSDSVLGSEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDL TQPQHINTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKL YLPK" misc_feature 3227548..3228297 /gene="ygjR" /locus_tag="SF3127" /note="Predicted dehydrogenase [General function prediction only]; Region: MviM; COG0673" /db_xref="CDD:440437" gene 3228817..3229779 /gene="ygjT" /locus_tag="SF3128" /db_xref="GeneID:1027180" CDS 3228817..3229779 /gene="ygjT" /locus_tag="SF3128" /note="Code: P; COG: COG0861" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708893.1" /db_xref="GeneID:1027180" /translation="MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAW SLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS YFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMAL AHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVI FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFI GIKMLIVDFYHIPIAVSLGVVFGILVMTFIINAWVNYRHDKQRG" misc_feature 3228832..3229752 /gene="ygjT" /locus_tag="SF3128" /note="integral membrane protein, TerC family; Region: R_switched_Alx; TIGR03718" /db_xref="CDD:274743" gene 3230377..3231621 /gene="ygjU" /locus_tag="SF3129" /db_xref="GeneID:1026702" CDS 3230377..3231621 /gene="ygjU" /locus_tag="SF3129" /note="Code: E; COG: COG3633" /codon_start=1 /transl_table=11 /product="serine/threonine transporter SstT" /protein_id="NP_708894.1" /db_xref="GeneID:1026702" /translation="MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVG LLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF SFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLG FALRHGNETTKNLVNDMSNAVTFMVKLVIRFAPFGIFGLVSSTLATTGFSTLWGYAQL LVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMA LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVA SLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTD VLFTAAACQAEDDRLANSALRN" misc_feature 3230383..3231588 /gene="ygjU" /locus_tag="SF3129" /note="serine/threonine transporter SstT; Provisional; Region: PRK13628" /db_xref="CDD:184190" gene complement(3231626..3232177) /gene="ygjV" /locus_tag="SF3130" /db_xref="GeneID:1026722" CDS complement(3231626..3232177) /gene="ygjV" /locus_tag="SF3130" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708895.1" /db_xref="GeneID:1026722" /translation="MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVH FFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIG TIVSTWALFRCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFW RMQKRGIDPFKVEKTPPAIDERG" misc_feature complement(3231701..3232165) /gene="ygjV" /locus_tag="SF3130" /note="Bacterial inner membrane protein; Region: Imp-YgjV; pfam10688" /db_xref="CDD:431436" gene complement(3232260..3233747) /gene="uxaA" /locus_tag="SF3131" /db_xref="GeneID:1027198" CDS complement(3232260..3233747) /gene="uxaA" /locus_tag="SF3131" /note="Code: G; COG: COG2721" /codon_start=1 /transl_table=11 /product="altronate hydrolase" /protein_id="NP_708896.1" /db_xref="GeneID:1027198" /translation="MQYIKIHALDNVAVALADLAEGTEVSVDNQTVTLRQDVARGHKF ALTDIAKGANVIKYGLPIGYALADIAAGEHVHAHNTRTNLSDLDQYRYQLDFQDLPAQ AADPEVQIYRRANGDVGVRNELWILPTVGCVNGIARQIQNRFLKETNNAEGTDGVFLF SHTYGCSQLGDDHINTRTMLQNMVRHPNAGAVLVIGLGCENNQVAAFRETLGDIDPER VHFMICQQQDDEIEAGIEHLHQLYNVMRNDKREPGKLSELKFGLECGGSDGLSGITAN PMLGRFSDYVIANGGTTVLTEVPEMFGAEQLLMDHCRDEATFEKLVTMVNDFKQYFIA HDQPIYENPSPGNKAGGITTLEDKSLGCTQKAGSSVVVDVLRYGERLKTPGLNLLSAP GNDAVATSALAGAGCHMVLFSTGRGTPYGGFVPTVKIATNSELAAKKKHWIDFDAGQL IHGKAMPQLLEEFIDTIVEFANGKQTCNERNDFRELAIFKSGVTL" misc_feature complement(3232263..3233747) /gene="uxaA" /locus_tag="SF3131" /note="Altronate dehydratase [Carbohydrate transport and metabolism]; Region: UxaA; COG2721" /db_xref="CDD:442034" gene complement(3233762..3235174) /gene="uxaC" /locus_tag="SF3132" /db_xref="GeneID:1027178" CDS complement(3233762..3235174) /gene="uxaC" /locus_tag="SF3132" /note="Code: G; COG: COG1904" /codon_start=1 /transl_table=11 /product="glucuronate isomerase" /protein_id="NP_708897.2" /db_xref="GeneID:1027178" /translation="MTPFMTEDFLLDTEFARRLYHDYAKDQPIFDYHCHLPPQQIAED YRFKNLYDIWLKGDHYKWRAMRTNGVAERLCTGDASDREKFDAWAATVPHTIGNPLYH WTHLELRRPFGITGKLLSPSTADEIWNECNELLAQDNFSARGIMQQMNVKMVGTTDDP IDSLEHHAEIAKDGSFTIKVLPSWRPDKAFNIEQATFNDYMAKLGEVSDTDIRRFADL QTALTKRLDHFAAHGCKVSDHALDVVMFAEANEAELDSILARRLAGETLSEHEVAQFK TAVLVFLGAEYARRGWVQQYHIGALRNNNLRQFKLLGPDVGFDSINDRPMAEELSKLL SKQNEENLLPKTILYCLNPRDNEVLGTMIGNFQGEGMPGKMQFGSGWWFNDQKDGMER QMTQLAQLGLLSRFVGMLTDSRSFLSYTRHEYFRRILCQMIGRWVEAGEAPADINLLG EMVKNICFNNARDYFAIELN" misc_feature complement(3233780..3235159) /gene="uxaC" /locus_tag="SF3132" /note="Glucuronate isomerase [Carbohydrate transport and metabolism]; Region: UxaC; COG1904" /db_xref="CDD:441508" gene 3235659..3236957 /gene="exuT" /locus_tag="SF3133" /db_xref="GeneID:1027182" CDS 3235659..3236957 /gene="exuT" /locus_tag="SF3133" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="hexuronates transporter" /protein_id="NP_708898.2" /db_xref="GeneID:1027182" /translation="MRKIKGLRWYMIALVTLGTVLGYLTRNTVAAAAPTLMEELNIST QQYSYIIAAYSAAYTVMQPVAGYVLDVLGTKIGYAMFAVLWAVFCGATALAGSWGGLA VARGAVGAAEAAMIPAGLKASSEWFPAKERSIAVGYFNVGSSIGAMIAPPLVVWAIVM HSWQMAFIISGALSFIWAMAWLIFYKHPRDQKHLTDEERDYIINGQEAQHQVSTAKKM SVGQILRNRQFWGIALPRFLAEPAWGTFNAWIPLFMFKVYGFNLKEIAMFAWMPMLFA DLGCILGGYLPPLFQRWFGVNLIVSRKMVVTLGAVLMIGPGMIGLFTNPYVAIMLLCI GGFAHQALSGALITLSSDVFGRNEVATANGLTGMSAWLASTLFALVVGALADTIGFSP LFAVLAVFDLLGALVIWTVLQNKPAIEVAQETHNDPAPQH" misc_feature 3235707..3236894 /gene="exuT" /locus_tag="SF3133" /note="D-galactonate transporter; Region: 2A0114; TIGR00893" /db_xref="CDD:273326" gene complement(3237045..3237677) /locus_tag="SF3134" /db_xref="GeneID:1027175" CDS complement(3237045..3237677) /locus_tag="SF3134" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708899.2" /db_xref="GeneID:1027175" /translation="MKNLPIGGVWKGKVKLHSNSPAQDYFANITLNTLDPNHIDVFFP EFAHATPRVQLDLHPTGSVNGSNYAQDLTMLDMCLYDGFNGNAISYEIMLKDEGRPAA GRRDGYFSIYRQGGTTTDEGERIDYRVKMYNPETGGQIDVRNNENMVWNSINLKRVRP VVLPGIRYAVMCVPTPLTLAVDKFSVMDKQAGYYMGKLSVIFTPSLPTIN" misc_feature complement(3237060..>3237677) /locus_tag="SF3134" /note="CblD like pilus biogenesis initiator; Region: CblD; cl06460" /db_xref="CDD:471445" mobile_element 3237769..3238536 /mobile_element_type="insertion sequence:IS1" gene 3237824..3238099 /gene="insA" /locus_tag="SF3135" /db_xref="GeneID:1025937" CDS 3237824..3238099 /gene="insA" /locus_tag="SF3135" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708900.1" /db_xref="GeneID:1025937" /translation="MASISIRCPSCSATEGVVRNGKSTAGHLRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 3237845..>3238096 /gene="insA" /locus_tag="SF3135" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3238126..3238521 /gene="insB" /locus_tag="SF3136" /db_xref="GeneID:1026739" CDS 3238126..3238521 /gene="insB" /locus_tag="SF3136" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708901.1" /db_xref="GeneID:1026739" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 3238129..3238518 /gene="insB" /locus_tag="SF3136" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3238629..3239405 /gene="exuR" /locus_tag="SF3137" /db_xref="GeneID:1026725" CDS 3238629..3239405 /gene="exuR" /locus_tag="SF3137" /note="Code: K; COG: COG2186" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor ExuR" /protein_id="NP_708902.1" /db_xref="GeneID:1026725" /translation="MEITEPRRLYQQLAADLKERIEQGVYLVGDKLPAERFIADEKNV SRTVVREAIIMLEVEGYVEVRKGSGIHVVSNQPRHQQAADNNMEFANYGPFELLQARQ LIESNIAEFAATQVTKQDIMKLMAIQEQARGEQCFRDSEWDLQFHIQVALATQNSALA AIVEKMWTQRSHNPYWKKLHEHIDSRTVDNWCDDHDQILKALIRKDPHAAKLAMWQHL ENTKIMLFNETSDDFEFNADRYLFAENPVVHLDTATSGSK" misc_feature 3238629..3239387 /gene="exuR" /locus_tag="SF3137" /note="transcriptional regulator ExuR; Region: PRK11523" /db_xref="CDD:183176" gene 3239750..3240412 /gene="yqjA" /locus_tag="SF3138" /db_xref="GeneID:1025266" CDS 3239750..3240412 /gene="yqjA" /locus_tag="SF3138" /note="Code: S; COG: COG0586" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708903.1" /db_xref="GeneID:1025266" /translation="MELLTQLLQALWAQDFETLANPSMIGMLYFVLFVILFLENGLLP AAFLPGDSLLVLVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGLSGLNNARFQFFNWMS GLLWVLILTTLGYMLGKTPVFLKYEDQLMSCLMLLPVVLLVFGLAGSLVVLWKKKYGN RG" misc_feature 3239819..>3240280 /gene="yqjA" /locus_tag="SF3138" /note="Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family [Cell wall/membrane/envelope biogenesis]; Region: DedA; COG0586" /db_xref="CDD:440351" gene 3240431..3240799 /gene="yqjB" /locus_tag="SF3139" /db_xref="GeneID:1026716" CDS 3240431..3240799 /gene="yqjB" /locus_tag="SF3139" /codon_start=1 /transl_table=11 /product="EnvZ/OmpR regulon moderator" /protein_id="NP_708904.2" /db_xref="GeneID:1026716" /translation="MSLRQLAWSGTVLLLVGTLLLAWSAVRQQESTLAIRAVHQGTTM PDGFSIWHHLDAHGIPFKSITPKNDTLLITFDSSDQSAAAKAVLDRTLPHGYIIAQQD NNSQAMQWLTRLRDNSHRFG" misc_feature 3240431..3240796 /gene="yqjB" /locus_tag="SF3139" /note="EnvZ/OmpR regulon moderator MzrA; Region: PRK10629" /db_xref="CDD:236728" gene 3240931..3241300 /gene="yqjC" /locus_tag="SF3140" /pseudo /db_xref="GeneID:1027191" misc_feature 3240931..3241300 /gene="yqjC" /locus_tag="SF3140" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 2367195 (128 aa). BLAST with identity of 99% in 123 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene 3241338..3241643 /gene="yqjD" /locus_tag="SF3141" /db_xref="GeneID:1025270" CDS 3241338..3241643 /gene="yqjD" /locus_tag="SF3141" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708905.2" /db_xref="GeneID:1025270" /translation="MSKEHTTEHLRAELKSLSDTLEEVLSSSGEKSKEELSKIRSKAE QALKQSRYRLGETGDAIAKQTRVAAARADEYVRENPWTGVGIGAAIGVVLGVLLSRR" misc_feature 3241341..3241640 /gene="yqjD" /locus_tag="SF3141" /note="Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis]; Region: ElaB; COG4575" /db_xref="CDD:443632" gene 3241646..3242050 /gene="yqjE" /locus_tag="SF3142" /db_xref="GeneID:1027183" CDS 3241646..3242050 /gene="yqjE" /locus_tag="SF3142" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708906.1" /db_xref="GeneID:1027183" /translation="MADTHHAQGPGKSVLGIGQRIVSIMVEMVETRLRLAVVELEEEK ANLFQLLLMLGLTMLFAAFGLMSLMVLIIWAVDPQYRLNAMIATTVVLLLLALIGGIW TLRKSRKSTLLRHTRHELANDRQLLEEESREQ" misc_feature 3241646..3242035 /gene="yqjE" /locus_tag="SF3142" /note="Uncharacterized membrane protein YqjE [Function unknown]; Region: YqjE; COG5393" /db_xref="CDD:444153" gene 3242040..3242339 /locus_tag="SF3143" /db_xref="GeneID:1026845" CDS 3242040..3242339 /locus_tag="SF3143" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708907.1" /db_xref="GeneID:1026845" /translation="MSSKVERERRKAQLLSQIQQQRLDLSASSREWLEATGAYDRRWN MLLSLRSWALVGSRVMAIWTIRHPNMLVRWARRGFGVWSAWRLVKTTLKQQQLRG" misc_feature 3242079..3242294 /locus_tag="SF3143" /note="YqjK-like protein; Region: YqjK; pfam13997" /db_xref="CDD:464063" gene 3242435..3242821 /locus_tag="SF3144" /db_xref="GeneID:1027190" CDS 3242435..3242821 /locus_tag="SF3144" /note="Code: S; COG: COG2259" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708908.1" /db_xref="GeneID:1027190" /translation="MILSIDSNDANSAPLHKKTISSLSGAVESMMKKLEDVGVLVAHI LMPILFITAGWGKITAYSGTQQYMEAMGVPGFMLLTAFLFHSNFAEGVNSLMFMKNLT ISGGFLLLAITGPGAYSIGRLLNKKW" misc_feature 3242519..3242818 /locus_tag="SF3144" /note="Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown]; Region: DoxX; COG2259" /db_xref="CDD:441860" gene 3242891..3243877 /gene="yqjG" /locus_tag="SF3145" /db_xref="GeneID:1027184" CDS 3242891..3243877 /gene="yqjG" /locus_tag="SF3145" /note="Code: O; COG: COG0435" /codon_start=1 /transl_table=11 /product="transferase" /protein_id="NP_708909.2" /db_xref="GeneID:1027184" /translation="MGQLIDGVWHDTWYDTKSTGGKFQRSASAFRNWLTADGAPGPTG TGGFIAEKDRYHLYVSLACPWAHRTLIMRKLKGLEPFISVSVVNPLMLENGWTFDDSF PGATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNTAF DALGAKAGDYYPPALQTKIDELNGWIYDTVNNGVYKAGFATSQQAYDEAVAKVFESLA RLEQILGQHRYLTGNQLTEADIRLWTTLVRFDPVYVTHFKCDKHRISDYLNLYGFLRD IYQMPGIAETVNFDHIRNHYFRSHKTINPTGIISIGPWQDLDEPHGRDVRFG" misc_feature 3242891..3243874 /gene="yqjG" /locus_tag="SF3145" /note="Glutathionyl-hydroquinone reductase [Energy production and conversion]; Region: ECM4; COG0435" /db_xref="CDD:440204" gene 3244170..3244538 /gene="yhaH" /locus_tag="SF3146" /db_xref="GeneID:1026709" CDS 3244170..3244538 /gene="yhaH" /locus_tag="SF3146" /note="Code: S; COG: COG3152" /codon_start=1 /transl_table=11 /product="cytochrome" /protein_id="NP_708910.2" /db_xref="GeneID:1026709" /translation="MDWYLKVLKNYVGFRGRARRKEYWMFILVNIIFTFVLGLLDKML GWQRAGGEGILTIIYGILVFLPWWAVQFRRLHDTDRSAWWALLFLIPFIGWLIIIVFN CQAGTPGENRFGPDPKLEQE" misc_feature 3244173..3244523 /gene="yhaH" /locus_tag="SF3146" /note="Uncharacterized membrane protein YhaH, DUF805 family [Function unknown]; Region: yhaH; COG3152" /db_xref="CDD:442386" gene complement(3244745..3245641) /gene="yhaJ" /locus_tag="SF3147" /db_xref="GeneID:1026704" CDS complement(3244745..3245641) /gene="yhaJ" /locus_tag="SF3147" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_708911.1" /db_xref="GeneID:1026704" /translation="MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQK LEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTIV TEALVPTPAFFPLIDKLAAKANTQLAIITEVLAGAWERLEQGRADIVIAPDMHFRSSS EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGIAVADTARERPVLTVQLLD KQPRLTVSTIEDKRQALLAGLGVATMPYPMVEKDIAEGRLRVVSPESTSEIDIIMAWR RDSMGEAKSWCLREIPKLFAGK" misc_feature complement(3245438..3245617) /gene="yhaJ" /locus_tag="SF3147" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature complement(3244769..3245347) /gene="yhaJ" /locus_tag="SF3147" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature complement(order(3244931..3244936,3244940..3244945, 3244961..3244978,3245249..3245269,3245270..3245272, 3245282..3245284,3245291..3245296,3245300..3245305)) /gene="yhaJ" /locus_tag="SF3147" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 3245746..3246447 /gene="yhaK" /locus_tag="SF3148" /db_xref="GeneID:1026543" CDS 3245746..3246447 /gene="yhaK" /locus_tag="SF3148" /note="Code: R; COG: COG1741" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708912.1" /db_xref="GeneID:1026543" /translation="MITTRTARQCGQADYGWLQARYTFSFGHYFDPKLLGYASLRVLN QEVLAPGAAFQPRTYPKVDILNVILDGEAEYRDSEGNHVQASAGEALLLSTQPGVSYS EHNLSKDKPLTRMQLWLDTCPQRENPLIQKLALNMDKQQLIASPEGAMGSLQLRQQVW LHHIVLDKGESANFQLHGPRAYLQSIHGKFHALTHHEEKAALTCGDGAFIRDEANITL VADSPLRALLIDLPV" misc_feature 3245794..3246150 /gene="yhaK" /locus_tag="SF3148" /note="RmlC-like cupin superfamily; Region: cupin_RmlC-like; cl40423" /db_xref="CDD:477354" misc_feature 3246220..3246441 /gene="yhaK" /locus_tag="SF3148" /note="Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, C-terminal cupin domain; Region: cupin_Yhhw_C; cd20311" /db_xref="CDD:380445" misc_feature order(3246226..3246228,3246289..3246291,3246295..3246303, 3246325..3246327,3246352..3246357,3246364..3246366, 3246370..3246372,3246418..3246420,3246424..3246426, 3246430..3246432,3246436..3246441) /gene="yhaK" /locus_tag="SF3148" /note="intramolecular domain interface [polypeptide binding]; other site" /db_xref="CDD:380445" gene 3246470..3246634 /gene="yhaL" /locus_tag="SF3149" /db_xref="GeneID:1027195" CDS 3246470..3246634 /gene="yhaL" /locus_tag="SF3149" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708913.2" /db_xref="GeneID:1027195" /translation="MSKKSTKKRQPAKPVVAKEPARTAKNFGYEEMLSELEAIVADAE TRLAEDEATA" gene complement(3246846..3248156) /gene="yhaM" /locus_tag="SF3150" /db_xref="GeneID:1027189" CDS complement(3246846..3248156) /gene="yhaM" /locus_tag="SF3150" /note="Code: S; COG: COG3681" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708914.3" /db_xref="GeneID:1027189" /translation="MFDSTLNPLWQRYILAVQEEVKPALGCTEPISLALAAAVAAAEL EGPVERVEAWVSPNLMKNGLGVTVPGTGMVGLPIAAALGALGGNANAGLEVLKDATAQ AIADAKALLAAGKVSVKIQEPCNEILFSRAKVWNGEKWACVTIVGGHTNIVHIETHNG VVFTHQACVAEGEQESPLTVLSRTTLAEILKFVNEVPFAAIRFILDSAKLNCALSQEG LSGKWGLHIGATLEKQCERGLLAKDLSSSIVIRTSAASDARMGGATLPAMSNSGSGNQ GITAIMPVVVVAEHFGADDERLARALMLSHLSAIYIHNQLPRLSALCAATTAAMGAAA GMAWLVDGRYETISMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDT AVTGNEGIVAHDVEQSIANLCALASHSMQQTDRQIIEIMASKAR" misc_feature complement(3246849..3248138) /gene="yhaM" /locus_tag="SF3150" /note="L-cysteine desulfidase YhaM [Amino acid transport and metabolism]; Region: CdsB; COG3681" /db_xref="CDD:442897" gene complement(3248184..3249515) /gene="yhaO" /locus_tag="SF3151" /db_xref="GeneID:1027176" CDS complement(3248184..3249515) /gene="yhaO" /locus_tag="SF3151" /note="Code: E; COG: COG0814" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_708915.1" /db_xref="GeneID:1027176" /translation="MEIASNKGVIADASTPAGRAGMSESEWREAIKFDSTDTGWVIMS IGMAIGAGIVFLPVQVGLMGLWVFLLSSVIGYPAMYLFQRLFINTLAESPECKDYPSV ISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGL VLICILVAISSRGEKLLFKISTDMVLTKLLVVAALGVSMVGMWHLYNVGSLPPLGLLV KNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFF YAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAAWVKVVSVILNIFAVMTAFFG VYLGFREATQGIVMNILRRKMPAEKINENLVQRGIMIFAILLAWSSIVLNAPVLSFTS ICSPIFGMVGCLIPAWLVYKVPALHKYKGMSLYLIIVTGLLLCVSLFLAFS" misc_feature complement(3248217..3249419) /gene="yhaO" /locus_tag="SF3151" /note="Solute carrier families 5 and 6-like; solute binding domain; Region: SLC5-6-like_sbd; cl00456" /db_xref="CDD:444915" gene complement(3249790..3251154) /locus_tag="SF3152" /db_xref="GeneID:1023528" CDS complement(3249790..3251154) /locus_tag="SF3152" /note="Code: E; COG: COG1760" /codon_start=1 /transl_table=11 /product="L-serine dehydratase TdcG" /protein_id="NP_708916.2" /db_xref="GeneID:1023528" /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKSFIDRLESSGLLTATSH IVVDLYGSLSLTGKGHATDVAIIMGLAGNSPQDVVIDEIPAFIELVTRSGRLPVASGA HIVDFPVAKNIIFHPEMLPRHENGMRITAWKGQEALLSKTYYSVGGGFIVEEEHFGLS HDVETSVPYDFHSAGELLKMCDYNGLSISGLMMHNELALRSKAEIDAGFARIWQVMHD GIERGMNTEGVLPGPLNVPCRAVALRRQLVSSDNISNDPMNVIDWINMYALAVSEENA AGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNERSIARYFLAAGAIGALYKMNASISG AEVGCQGEIGVACSMAAAGLTELLGGSPAQVCNAAEIAMEHNLGLTCDPVAGQVQIPC IERNAINAVKAVNAARMAMRRTSAPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK VVCG" misc_feature complement(3249793..3251154) /locus_tag="SF3152" /note="L-serine ammonia-lyase; Region: PRK15040" /db_xref="CDD:185000" gene complement(3251226..3251615) /gene="yhaR" /locus_tag="SF3153" /db_xref="GeneID:1027187" CDS complement(3251226..3251615) /gene="yhaR" /locus_tag="SF3153" /note="Code: J; COG: COG0251" /codon_start=1 /transl_table=11 /product="endoribonuclease L-PSP" /protein_id="NP_708917.2" /db_xref="GeneID:1027187" /translation="MKKIIETQRAPGAIGPYVQGVDLGSMVFTSGQIPVCPQTGEIPA DVQDQARLSLENVKAIVVAAGLSVGDIIKMTVFITDLNDFATINEVYKQFFDEHQATY PTRSCVQVARLPKDVKLEIEAIAVRSA" misc_feature complement(3251229..3251615) /gene="yhaR" /locus_tag="SF3153" /note="enamine/imine deaminase; Region: PRK11401" /db_xref="CDD:105214" misc_feature complement(order(3251244..3251246,3251250..3251252, 3251256..3251258,3251286..3251309,3251343..3251345, 3251352..3251354,3251385..3251387,3251391..3251393, 3251397..3251402,3251406..3251408,3251523..3251528, 3251532..3251534,3251538..3251540,3251547..3251549, 3251553..3251555,3251562..3251567)) /gene="yhaR" /locus_tag="SF3153" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100004" misc_feature complement(order(3251256..3251258,3251301..3251303, 3251352..3251354,3251364..3251366,3251565..3251567)) /gene="yhaR" /locus_tag="SF3153" /note="putative active site [active]" /db_xref="CDD:100004" gene complement(3251629..3253923) /gene="tdcE" /locus_tag="SF3154" /db_xref="GeneID:1027169" CDS complement(3251629..3253923) /gene="tdcE" /locus_tag="SF3154" /note="Code: C; COG: COG1882" /codon_start=1 /transl_table=11 /product="formate acetyltransferase 3" /protein_id="NP_708918.1" /db_xref="GeneID:1027169" /translation="MKVDIDTSDKLYADAWLGFKGTDWKSEINVRDFIQHNYTPYEGD ESFLAEATPATTELWEKVMEGIRIENATHAPVDFDTNIATTITAHDAGYINQPLEKIV GLQTDAPLKRALHPFGGINMIKSSFHAYGREMDSEFEYLFTDLRKTHNQGVFDVYSPD MLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGISYLVRERELQFADLQSRLEKGEDL EATIRLREELAEHRHALLQIQEMAAKYGFDISRPAQNAQEAVQWLYFAYLAAVKSQNG GAMSLGRTASFLDIYIERDFKAGVLNEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEELPIAFKKYA AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA INGGVDEKLKIQVGPKTAPLMDDVLDYDKVMDSLDHFMDWLAVQYISALNIIHYMHDK YSYEASLMALHDRDVYRTMACGIAGLSVATDSLSAIKYARVKPIRDENGLAVDFEIDG EYPQYGNNDERVDSIACDLVERFMKKIKALPTYRNAVPTQSILTITSNVVYGQKTGNT PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE DPVRKTNLVGLLDGYFHHEADVEGGQHLNVNVMNREMLLDAIEHPEKYPNLTIRVSGY AVRFNALTREQQQDVISRTFTQAL" misc_feature complement(3251644..3253881) /gene="tdcE" /locus_tag="SF3154" /note="Pyruvate formate lyase 1; Region: PFL1; cd01678" /db_xref="CDD:153087" misc_feature complement(order(3253426..3253431,3253438..3253440, 3253453..3253455,3253459..3253464,3253471..3253476, 3253558..3253563)) /gene="tdcE" /locus_tag="SF3154" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:153087" misc_feature complement(order(3252091..3252093,3252097..3252099, 3252604..3252606,3252613..3252615,3252655..3252657, 3252910..3252912,3252928..3252930,3253090..3253095, 3253381..3253383)) /gene="tdcE" /locus_tag="SF3154" /note="active site" /db_xref="CDD:153087" misc_feature complement(order(3251707..3251709,3252652..3252657)) /gene="tdcE" /locus_tag="SF3154" /note="catalytic residues [active]" /db_xref="CDD:153087" misc_feature complement(3251704..3251718) /gene="tdcE" /locus_tag="SF3154" /note="glycine loop [active]" /db_xref="CDD:153087" gene complement(3253957..3255165) /gene="tdcD" /locus_tag="SF3155" /db_xref="GeneID:1027186" CDS complement(3253957..3255165) /gene="tdcD" /locus_tag="SF3155" /note="Code: C; COG: COG0282" /codon_start=1 /transl_table=11 /product="kinase" /protein_id="NP_708919.4" /db_xref="GeneID:1027186" /translation="MNEFPVVLVINCGSSSIKFSVLDASDCEVLMSGIADGINSENAF LSVNGGEPAPLAHHSYEGALKAIAFELEKRNLNDSVALIGHRIAHGGSIFTESAIITD EVIDNIRRVSPLAPLHNYANLSGIESAQQLFPGVTQVAVFDTSFHQTMAPEAYLYGLP WKYYEELGVRRYGFHGTSHRYVSQRAHSLLNLAEDDSGLVVAHLGNGASICAVRNGQS VDTSMGMTPLEGLMMGTRSGDVDFGAMSWVASQTNQSLGDLERVVNKESGLLGISGLS SDLRVLEKAWHEGHERAQLAIKTFVHRIARHIAGHAASLRRLDGIIFTGGIGENSSLI RRLVMEHLAVLGVEIDTEMNNRSNSFGERIVSSENAHVICVVIPTNEEKMIALDAIHL GKVNAPAEFA" misc_feature complement(3253978..3255165) /gene="tdcD" /locus_tag="SF3155" /note="propionate kinase; Region: PRK12379" /db_xref="CDD:183484" gene complement(3255191..3256522) /gene="tdcC" /locus_tag="SF3156" /db_xref="GeneID:1027153" CDS complement(3255191..3256522) /gene="tdcC" /locus_tag="SF3156" /note="Code: E; COG: COG0814" /codon_start=1 /transl_table=11 /product="threonine/serine transporter TdcC" /protein_id="NP_708920.1" /db_xref="GeneID:1027153" /translation="MSTSDSIVSSQTKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRA GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF LYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGKDLM VKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILITVWLGISIM VFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLF TLSPANMAEAKAQNIPVLSYLANHFASMTGTKTTFAITLEYAASIIALVAIFKSFFGH YLGTLEGLNGLILKFGYKGDKTKVSLGKLNTLSMIFIMGSTWVVAYANPNILDLIEAM GAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTVIGLLTILNIVYKLF" misc_feature complement(3255194..3256522) /gene="tdcC" /locus_tag="SF3156" /note="threonine/serine transporter TdcC; Provisional; Region: PRK13629" /db_xref="CDD:184191" gene complement(3256544..3257533) /gene="tdcB" /locus_tag="SF3157" /db_xref="GeneID:1027202" CDS complement(3256544..3257533) /gene="tdcB" /locus_tag="SF3157" /note="Code: E; COG: COG1171" /codon_start=1 /transl_table=11 /product="threonine dehydratase" /protein_id="NP_708921.1" /db_xref="GeneID:1027202" /translation="MHITYDLPVAIDDIIEAKQRLAGRIYKTGMPRSNYFSERCKGEI FLKFENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQGVSLSCAMLGIDGK VVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVEMEGRIFIPPYDDPKVIA GQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAVAIKSINPTIRVIGVQSENVHGMAA SFHSGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQR NKVVTEGAGALACAALLSGKLDQYIQNRKTVSIISGGNIDLSRVSQITGFVDA" misc_feature complement(3256553..3257533) /gene="tdcB" /locus_tag="SF3157" /note="bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB; Region: PRK08638" /db_xref="CDD:236317" misc_feature complement(order(3256586..3256597,3256694..3256702, 3256712..3256714,3256721..3256726,3256733..3256735, 3256940..3256945,3257381..3257386,3257477..3257482, 3257489..3257491,3257498..3257503)) /gene="tdcB" /locus_tag="SF3157" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:107205" misc_feature complement(order(3256601..3256603,3256970..3256984, 3257279..3257281,3257360..3257362)) /gene="tdcB" /locus_tag="SF3157" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107205" misc_feature complement(3257360..3257362) /gene="tdcB" /locus_tag="SF3157" /note="catalytic residue [active]" /db_xref="CDD:107205" gene complement(3257632..3258570) /gene="tdcA" /locus_tag="SF3158" /db_xref="GeneID:1027154" CDS complement(3257632..3258570) /gene="tdcA" /locus_tag="SF3158" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator TdcA" /protein_id="NP_708922.1" /db_xref="GeneID:1027154" /translation="MSTILLPKTQHLVVFQEVIRSGSIGSAAKELGLTQPAVSKIIND IEDYFGVELVVRKNTGVTLTPAGQLLLSRSESITREMKNMVNEISGMSSEAVVEVSFG FPSLIGFTFMSGMINKFKEVFPKAQVSMYEAQLSSFLPAIRDGRLDFAIGTLSAEMKL QDLHVEPLFESEFVLVASKSRTCTGTTTLESLKNEQWVLPQTNMGYYSELLTTLQRNG ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTSPFGSNQFITIPVEETLPVAQYAAV WSKNYRIKKAASVLVELAKEYSSYNGCRRRQLIEVG" misc_feature complement(3257635..3258570) /gene="tdcA" /locus_tag="SF3158" /note="transcriptional regulator TdcA; Region: PRK10341" /db_xref="CDD:182391" gene 3258760..3259104 /gene="tdcR" /locus_tag="SF3159" /db_xref="GeneID:1027181" CDS 3258760..3259104 /gene="tdcR" /locus_tag="SF3159" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator TdcR" /protein_id="NP_708923.1" /db_xref="GeneID:1027181" /translation="MTGITIFYGDNIIRYVVNTKKGLRPYFKQLPDNYQAKFELNLMS KFSNFIINKPFSAINTAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQLINVNFFSS DRTSFCECNRFP" misc_feature 3258760..3259101 /gene="tdcR" /locus_tag="SF3159" /note="DNA-binding transcriptional activator TdcR; Provisional; Region: PRK11424" /db_xref="CDD:236909" gene 3259922..3261099 /gene="yhaC" /locus_tag="SF3160" /pseudo /db_xref="GeneID:1027185" misc_feature 3259922..3261099 /gene="yhaC" /locus_tag="SF3160" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789509 (396 aa). BLAST with identity of 96% in 393 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(3261709..3262085) /gene="rnpB" /locus_tag="SF4561" /db_xref="GeneID:1027161" ncRNA complement(3261709..3262085) /ncRNA_class="RNase_P_RNA" /gene="rnpB" /locus_tag="SF4561" /product="RNase P, RNA component" /note="'M1 RNA; processes tRNA, 4.5S RNA'" /db_xref="GeneID:1027161" gene complement(3262118..3263344) /gene="yhaD" /locus_tag="SF3161" /db_xref="GeneID:1025646" CDS complement(3262118..3263344) /gene="yhaD" /locus_tag="SF3161" /note="Code: G; COG: COG1929" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708924.3" /db_xref="GeneID:1025646" /translation="MAYCNPGLESRPNKRNALRRHVVTGIGMKIVIAPDSYKESLSAS EVAQAIEKGFREIFPDAQYVSIPVADGGEGTVEAMIAATQGSERHAWVTGPLGEKVNA SWGISGDGKTAFIEMAAASGLELVPAEKRDPLVTTSRGTGELILQALESGATNIIIGI GGSATNDGGAGMVQALGAKLCDANGNEIGFGGGSLNTLNDIDISGLDPRLKDCVIRVA CDVTNPLVGDNGASRIFGPQKGASEAMIVELDNNLSHYADVIKKALHVDVKDVPGAGA AGGMGAALMAFLGAELKSGIEIVTTALNLEEHIHDCTLVITGEGRIDSQSIHGKVPIG VANVAKKYHKPVIGIAGSLTDDVGVVHQHGIDAVFSVLTSIGTLDEAFRGAYDNICRA SRNIAATLAIGMRNTG" misc_feature complement(3262121..3263263) /gene="yhaD" /locus_tag="SF3161" /note="glycerate kinase I; Provisional; Region: PRK10342" /db_xref="CDD:182392" gene complement(3263360..3264259) /gene="yhaE" /locus_tag="SF3162" /db_xref="GeneID:1027188" CDS complement(3263360..3264259) /gene="yhaE" /locus_tag="SF3162" /note="Code: I; COG: COG2084" /codon_start=1 /transl_table=11 /product="2-hydroxy-3-oxopropionate reductase" /protein_id="NP_708925.3" /db_xref="GeneID:1027188" /translation="MIDMTMKVGFIGLGIMGKPMSKNLLKAGYSLVVADRNPEAIADV IAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIA PLASREISEALKAKGIDMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAG SVVHTGAIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGST VLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADG LGTADHSALVCYYEKLAKVEVTR" misc_feature complement(3263363..3264250) /gene="yhaE" /locus_tag="SF3162" /note="tartronate semialdehyde reductase; Provisional; Region: garR; PRK11559" /db_xref="CDD:183197" gene complement(3264280..3265050) /gene="yhaF" /locus_tag="SF3163" /pseudo /db_xref="GeneID:1027162" misc_feature complement(3264280..3265050) /gene="yhaF" /locus_tag="SF3163" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789514 (257 aa). BLAST with identity of 99% in 256 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(3265066..3266400) /gene="yhaU" /locus_tag="SF3164" /db_xref="GeneID:1024440" CDS complement(3265066..3266400) /gene="yhaU" /locus_tag="SF3164" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_708926.1" /db_xref="GeneID:1024440" /translation="MILDTVDEKRKGVHTRYLILLIIFIVTAVNYADRATLSIAGTEV AKELQLSAVSMGYIFSAFGWAYLLMQIPGGWLLDKFGSKKVYTYSLFFWSLFTFLQGF VDMFPLAWAGISMFFMRFMLGFSEAPSFPANARIVAAWFPTKERGTASAIFNSAQYFS LALFSPLLGWLTFAWGWEHVFTVMGVICFVLTALWIKLIHNPTDHPRMSEEELKFISE NGAVVDMDHKKPGSAAASGPKLHYIKQLLSNRMMLGVFFGQYFINTITWFFLTWFPIY LVQEKGMSILKVGLVASIPALCGFAGGVLGGVFSDYLIKRGLSLTLARKLPIVLGMLL ASTIILCNYTNNTTLVVMLMALAFFGKGFGALGWPVISDTAPKEIVGLCGGVFNVFGN VASIVTPLVIGYLVSELHSFNAALVFVGCSALMAMVCYLFVVGDIKRMELQK" misc_feature complement(3265099..3266328) /gene="yhaU" /locus_tag="SF3164" /note="D-galactonate transporter; Region: 2A0114; TIGR00893" /db_xref="CDD:273326" gene 3266775..3268346 /gene="yhaG" /locus_tag="SF3165" /db_xref="GeneID:1026846" CDS 3266775..3268346 /gene="yhaG" /locus_tag="SF3165" /note="Code: G; COG: COG2721" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="NP_708927.2" /db_xref="GeneID:1026846" /translation="MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLE LIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTL PLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDL LPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKL QPERLLTGTDDVQAIPVESASIVSLQDEKHVGFQSMVEDILQVAERHLQKLNQRQRET CPASELVVGMHCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTP RAVNEEVGKRLLEEMEWYDNYLNMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGK SAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVP VIKMAPRTELANRWFDLMDINAGTIATGEETIEEEGWKLFHFILDVASGKKKTFSDQW GLHNQLAVFNPAPVT" misc_feature 3266817..3268343 /gene="yhaG" /locus_tag="SF3165" /note="galactarate dehydratase; Region: galactar-dH20; TIGR03248" /db_xref="CDD:274491" gene complement(3268398..3269222) /gene="agaR" /locus_tag="SF3166" /db_xref="GeneID:1027165" CDS complement(3268398..3269222) /gene="agaR" /locus_tag="SF3166" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator AgaR" /protein_id="NP_708928.1" /db_xref="GeneID:1027165" /translation="MSNTDASGEKRVTGTSERREQIIQRLRQQGSVQVNDLSALYGVS TVTIRNDLAFLEKQGIAVRAYGGALICDSTTPSVEPSVEDKSALNTAMKRSVAKAAVE LIQPGHRVILDSGTTTFEIARLMRKYTDVIAMTNGMNVANALLEAEGVELLMTGGHLR RQSQSFYGDQAEQSLQNYHFDMLFLGVDAIDLERGVSTHNEDEARLSRRMCEVAERII VVTDSSKFNRSSLHKIIDTQRIDMIIVDEGIPADSLEGLRKAGVEVILVGDHASSL" misc_feature complement(3268416..3269222) /gene="agaR" /locus_tag="SF3166" /note="DeoR family transcriptional regulator; Region: PRK09802" /db_xref="CDD:182086" gene 3269471..3270751 /gene="agaZ" /locus_tag="SF3167" /db_xref="GeneID:1027164" CDS 3269471..3270751 /gene="agaZ" /locus_tag="SF3167" /codon_start=1 /transl_table=11 /product="tagatose 6-phosphate aldolase subunit KbaZ" /protein_id="NP_708929.1" /db_xref="GeneID:1027164" /translation="MKHLTEMVRQHKAGKTNAIYAVCSAHPLVLEAAIRYASANQTPL LIEATSNQVDQFGGYTGMTPADFRGFVCQLADSLNFPQDALILGGDHLGPNRWQNLPA AQAMANADDLIKSYVAAGFKKIHLDCSMSCQDDPIPLTDDIVAERAARLAKVAEETCR EHFGEADLEYVIGTEVPVPGGAHETLSELAVTTPDAARATLEAHRHAFEKQGLNAIWP RIIALVVQPGVEFDHTNVIDYQPAKASALSQMVENYETLIFEAHSTDYQTPQSLRQLV IDHFAILKVGPALTFALREALFSLAAIEEELVPAKACSGLRQVLENVMLDRPEYWQSH YHGDGNARRLARGYSYSDRVRYYWPDSQIDDAFAHLVRNLADSPIPLPLISQYLPLQY VKVRSGELQPTPRELIINHIQDILAQYHTACEGQ" misc_feature 3269471..3270748 /gene="agaZ" /locus_tag="SF3167" /note="tagatose 6-phosphate aldolase subunit KbaZ; Provisional; Region: PRK15458" /db_xref="CDD:185355" gene 3270738..3271247 /gene="agaV" /locus_tag="SF3168" /db_xref="GeneID:1027160" CDS 3270738..3271247 /gene="agaV" /locus_tag="SF3168" /note="Code: G; COG: COG3444" /codon_start=1 /transl_table=11 /product="PTS system N-acetylgalactosamine-specific transporter subunit IIB" /protein_id="NP_708930.1" /db_xref="GeneID:1027160" /translation="MKANKQNKEEHAMPNIVLSRIDERLIHGQVGVQWVGFAGANLVL VANDEVAEDPVQQNLMEMVLAEGIAVRFWTLQKVIDNIHRAADRQKILLVCKTPADFL TLVKGGVPVNRINVGNMHYANGKQQIAKTVSVDAGDIAAFNDLKAAGVECFVQGVPTE PAVDLFKLL" misc_feature 3270774..3271244 /gene="agaV" /locus_tag="SF3168" /note="PTS N-acetylgalactosamine transporter subunit IIB; Region: PRK11425" /db_xref="CDD:183129" misc_feature order(3270795..3270797,3270807..3270809,3270816..3270818) /gene="agaV" /locus_tag="SF3168" /note="active site" /db_xref="CDD:237975" misc_feature 3270816..3270818 /gene="agaV" /locus_tag="SF3168" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:237975" gene 3271258..3272037 /gene="agaW" /locus_tag="SF3169" /db_xref="GeneID:1023770" CDS 3271258..3272037 /gene="agaW" /locus_tag="SF3169" /codon_start=1 /transl_table=11 /product="PTS system N-acetylgalactosamine-specific transporter subunit IIC" /protein_id="NP_708931.1" /db_xref="GeneID:1023770" /translation="MEISLLQAFALGIIAFIAGLDMFNGLTHMHRPVVLGPLVGLVLG DLHTGILTGDTLELVWMGLAPLAGAQPPNVIIGTIVGTAFAITTGVKPDVAVGVAVPF AVAVQMGITFLFSVMSGVMSRCDRMAENADTRGIERVNYLALLALGTFYFLCAFLPIY FGAEHAKTIIDVLPQRLIDGLGVAGGIMPAIGFAVLLKIMMKNVYIPYFILGFVAATW LKLPVLAIAAAALAMALIDLLRKSPEPTQPAAQKEEFEDGI" misc_feature 3271288..3272034 /gene="agaW" /locus_tag="SF3169" /note="PTS N-acetylgalactosamine transporter subunit IIC; Region: AgaW; NF040757" /db_xref="CDD:468717" gene 3272027..3272836 /gene="agaE" /locus_tag="SF3170" /db_xref="GeneID:1027151" CDS 3272027..3272836 /gene="agaE" /locus_tag="SF3170" /codon_start=1 /transl_table=11 /product="PTS system N-acetylgalactosamine-specific transporter subunit IID" /protein_id="NP_708932.2" /db_xref="GeneID:1027151" /translation="MASNQTTLPNVSENEETLLTGVNENVYEDRSIAAELTKKDINRV AWRSMLLQASFNYERMQASGWLYGLLPALKKIHTNKRDLARAMKGHMGFFNTHPFLVT FVIGIILAMERSKQDVNSIQSTKIAVGAPLGGIGDAMFWLTLLPICGGIGASLALQGS ILGAVVFIVLFNVVHLGLRFGLAHYAYRMGVAAIPLIKANTKKVGHAASIVGMTVIGA LVATYVRLSTTLEITAGDAVVKLQADVIDKLMPAFLPLVYTLTMFWLVRRG" misc_feature 3272027..3272833 /gene="agaE" /locus_tag="SF3170" /note="PTS N-acetylgalactosamine transporter subunit IID; Region: AgaE; NF040760" /db_xref="CDD:468720" gene 3272923..3273357 /gene="agaF" /locus_tag="SF3171" /db_xref="GeneID:1027196" CDS 3272923..3273357 /gene="agaF" /locus_tag="SF3171" /note="Code: G; COG: COG2893" /codon_start=1 /transl_table=11 /product="PTS system N-acetylgalactosamine-specific transporter subunit IIA" /protein_id="NP_708933.1" /db_xref="GeneID:1027196" /translation="MLSIILTGHGGFASGMEKAMKQILGDQSQFIAIDFPETSSAALL TSQLEEAIAQLDCEDGIVFLTDLLGGTPFRVASTLAMQKPGCEVITGTNLQLLLEMVL EREGLSGEEFRVQALECGHRGLTSLVDELGRCHEECPVEEGI" misc_feature 3272923..3273354 /gene="agaF" /locus_tag="SF3171" /note="PTS galactosamine/N-acetylgalactosamine transporter subunit IIA; Region: AgaF; NF040761" /db_xref="CDD:468721" gene 3273354..3273797 /gene="agaA" /locus_tag="SF3172" /db_xref="GeneID:1025960" CDS 3273354..3273797 /gene="agaA" /locus_tag="SF3172" /codon_start=1 /transl_table=11 /product="N-acetylglucosamine-6-phosphate deacetylase" /protein_id="NP_708934.2" /db_xref="GeneID:1025960" /translation="MTHVLRARRLLTEEGWFDDHQLRVADGVIAAIEPIPVGVTERDA ERLCPAYIDTHVHGGAGVDVMDDAPDVLDKLAMHKAREGVGSWLPTTVTAPLNTIHAA LKRIAQRCQRGGPGAQVLGSYLEGPYFTPQNKGAHPPGNAANLLI" misc_feature 3273363..>3273770 /gene="agaA" /locus_tag="SF3172" /note="N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]; Region: NagA; COG1820" /db_xref="CDD:441425" mobile_element 3273771..3274538 /mobile_element_type="insertion sequence:IS1" gene 3273826..3274101 /gene="insA" /locus_tag="SF3173" /db_xref="GeneID:1027173" CDS 3273826..3274101 /gene="insA" /locus_tag="SF3173" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708935.1" /db_xref="GeneID:1027173" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 3273847..>3274098 /gene="insA" /locus_tag="SF3173" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3274128..3274523 /gene="insB" /locus_tag="SF3174" /db_xref="GeneID:1027163" CDS 3274128..3274523 /gene="insB" /locus_tag="SF3174" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708936.1" /db_xref="GeneID:1027163" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 3274131..3274520 /gene="insB" /locus_tag="SF3174" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3274778..3275581 /gene="agaC" /locus_tag="SF3175" /db_xref="GeneID:1027152" CDS 3274778..3275581 /gene="agaC" /locus_tag="SF3175" /codon_start=1 /transl_table=11 /product="PTS system N-acetylgalactosamine-specific transporter subunit IIC" /protein_id="NP_708937.1" /db_xref="GeneID:1027152" /translation="MHEITLLQGLSLAALVFVLGIDFWLEALFLFRPIIVCTLTGAIL GDIQTGLITGGLTELAFAGLTPAGGVQPPNPIMAGLMTTVIAWSTGVDAKTAIGLGLP FSLLMQYVILFFYSAFSLFMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCT YLAQGAMQALVKAMPAWLTHGFEVAGGILPAVGFGLLLRVMFKAQYIPYLIAGFLFVC YIRVSNLLPVAVLGAGFAVYEFFNAKSRQQAQPQPVASKNEEEDYSNGI" misc_feature 3274778..3275578 /gene="agaC" /locus_tag="SF3175" /note="PTS N-acetylgalactosamine transporter subunit IIC; Region: PRK09757" /db_xref="CDD:236621" gene 3275571..3276362 /gene="agaD" /locus_tag="SF3176" /db_xref="GeneID:1025066" CDS 3275571..3276362 /gene="agaD" /locus_tag="SF3176" /codon_start=1 /transl_table=11 /product="PTS system N-acetylgalactosamine-specific transporter subunit IID" /protein_id="NP_708938.2" /db_xref="GeneID:1025066" /translation="MGSEISKKDITRLGFRSSLLQASFNYERMQAGGFTWAMLPILKK IYKDDKPGLSAAMKDNLEFINTHPNLVGFLMGLLISMEEKGENRDTIKGLKVALFGPI AGIGDAIFWFTLLPIMAGICSSFASQGNLLGPILFFAVYLLIFFLRVGWTHVGYSVGV KAIDKVRENSQMIARSATILGITVIGGLIASYVHINVVTSFAIDSTHSVALQQDFFDK VFPNILPMAYTLLMYYFLRVKKAHPVLLIGVTFVLSIVCSAFGIL" misc_feature 3275571..3276359 /gene="agaD" /locus_tag="SF3176" /note="PTS N-acetylgalactosamine transporter subunit IID; Region: PRK09855" /db_xref="CDD:182115" gene 3276363..3277118 /gene="agaI" /locus_tag="SF3177" /db_xref="GeneID:1027174" CDS 3276363..3277118 /gene="agaI" /locus_tag="SF3177" /note="Code: G; COG: COG0363" /codon_start=1 /transl_table=11 /product="galactosamine-6-phosphate isomerase" /protein_id="NP_708939.1" /db_xref="GeneID:1027174" /translation="MERGTASGGASLLKEFHPVQTLQQVENYTALSERASEYLLAVIR SKPDAVICLATGATPLLTYHYLVEKIHQQQVDISQLTFVKLDEWVDLPLTMPGTCETF LQQHIVQPLGLREDQLISFRSEEINETECERVTNLIARKGGLDLCVLGLGKNGHLGLN EPGESLQPACHISQLDARTQQHEMLKTTGRPVTRGITLGLKDILNAREVLLLVTGEGK QDATERFLTAKVSTAIPASFLWLHSNFICLINT" misc_feature 3276420..3277115 /gene="agaI" /locus_tag="SF3177" /note="galactosamine-6-phosphate isomerase; Provisional; Region: PRK09762" /db_xref="CDD:182064" misc_feature order(3276525..3276536,3276615..3276620,3276810..3276815, 3276828..3276830,3276834..3276836,3276912..3276914, 3277014..3277016) /gene="agaI" /locus_tag="SF3177" /note="active site" /db_xref="CDD:238693" misc_feature order(3276849..3276851,3276855..3276860,3276882..3276884, 3277038..3277058,3277080..3277088) /gene="agaI" /locus_tag="SF3177" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238693" misc_feature order(3276852..3276857,3276873..3276884) /gene="agaI" /locus_tag="SF3177" /note="allosteric site [active]" /db_xref="CDD:238693" misc_feature order(3276888..3276890,3276897..3276899,3276900..3276926, 3276933..3276938) /gene="agaI" /locus_tag="SF3177" /note="active site lid [active]" /db_xref="CDD:238693" misc_feature 3277519..3278880 /note="Similar to Escherichia coli K12 fimbrial-like protein gi: 1789531 (195 aa). BLAST with identity of 96% in 454 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element complement(3277612..3278379) /mobile_element_type="insertion sequence:IS1" gene complement(3277627..3278022) /gene="insB" /locus_tag="SF3179" /db_xref="GeneID:1027168" CDS complement(3277627..3278022) /gene="insB" /locus_tag="SF3179" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_708940.1" /db_xref="GeneID:1027168" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3277630..3278019) /gene="insB" /locus_tag="SF3179" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3278049..3278324) /gene="insA" /locus_tag="SF3180" /db_xref="GeneID:1027170" CDS complement(3278049..3278324) /gene="insA" /locus_tag="SF3180" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_708941.1" /db_xref="GeneID:1027170" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3278052..3278303) /gene="insA" /locus_tag="SF3180" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3278960..3279655 /locus_tag="SF3181" /db_xref="GeneID:1026847" CDS 3278960..3279655 /locus_tag="SF3181" /codon_start=1 /transl_table=11 /product="chaperone" /protein_id="YP_008439285.1" /db_xref="GeneID:1026847" /translation="MSKRTFAVILTLLCSFCIGQALAGGIVLQRTRVIYDASRKEAAL PVANKGAETPYLLQSWVDNIDGKSRAPFIITPPLFRLEASDDSSLRIIKTADNLPENK ESLFYINVRAIPAKKKSDDVNANELTLVFKTRVKMFYRPAHLKGRVNDAWKSLEFKRS DHSLNIYNPTEYYVVFAGLAVDKTDLTSKIEYIAPGEHKQLPLPASGGKNVKWAAIND YGGSSGTETRPLQ" misc_feature 3278966..3279628 /locus_tag="SF3181" /note="P pilus assembly protein, chaperone PapD [Extracellular structures]; Region: FimC; COG3121" /db_xref="CDD:442355" misc_feature 3279684..3283536 /note="Similar to Escherichia coli K12 outer membrane protein gi: 1789533 (839 aa). BLAST with identity of 98% in 1284 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element complement(3281409..3282739) /mobile_element_type="insertion sequence:IS2" gene complement(3281420..3282259) /locus_tag="SF3184" /pseudogene="unknown" /db_xref="GeneID:1027167" gene complement(3282283..3282693) /locus_tag="SF3185" /db_xref="GeneID:1027157" CDS complement(3282283..3282693) /locus_tag="SF3185" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_708945.3" /db_xref="GeneID:1027157" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMKNELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(3282286..3282648) /locus_tag="SF3185" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 3283547..3284638 /gene="yraK" /locus_tag="SF3186" /db_xref="GeneID:1027166" CDS 3283547..3284638 /gene="yraK" /locus_tag="SF3186" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_708946.2" /db_xref="GeneID:1027166" /translation="MKRAPLITGLLLISTSCAYASSGGCGADSTSGATNYSSVVDDVT VNQTDNVTGREFTSATLSSTNWQYACSCSAGKAVKLVYMVSPVLTTTGHQTGYYKLND SLDIKTTLQANDIPGLTTDQVVSVNTRFTQIKSSTVYSAATQTGVCQGDTSRYGPVNI GANTTFTLYVTKPFLGSMTIPKTDIAVIKGAWVDGMGSPSTGDFHDLVKLSIQGNLTA PQSCKINQGDVIKVNFGFINGQKFTTRNAMPDGFTPVDFDITYDCGDTSKIKNSLQMR IDGTTGVVDQYNLVARRRSSDNVPDVGIRIENLGGGVANIPFQNGILPVDPSGHGTVN MRAWPVNLVGGELETGKFQGTATITVMVR" misc_feature 3283610..3284635 /gene="yraK" /locus_tag="SF3186" /note="fimbrial protein; Region: PRK15297" /db_xref="CDD:185197" misc_feature 3284174..3284626 /gene="yraK" /locus_tag="SF3186" /note="Fimbrial protein; Region: Fimbrial; pfam00419" /db_xref="CDD:425671" gene complement(3284681..3285541) /gene="yraL" /locus_tag="SF3187" /db_xref="GeneID:1027135" CDS complement(3284681..3285541) /gene="yraL" /locus_tag="SF3187" /note="Code: R; COG: COG0313" /codon_start=1 /transl_table=11 /product="SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase" /protein_id="NP_708947.1" /db_xref="GeneID:1027135" /translation="MKQHQSADNSQGQLYIVPTPIGNLADITQRTLEVLQAVDLIAAE DTRHTGLLLQHFGINARLFALHDHNEQQKAETLLAKLQEGQNIALVSDAGTPLINDPG YHLVRTCREAGIRVVPLPGPCAAITALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE AEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVK EDENRRKGEMVLIVEGHKAQEEDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNA LYKYALEQQG" misc_feature complement(3284684..3285541) /gene="yraL" /locus_tag="SF3187" /note="SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional; Region: PRK14994" /db_xref="CDD:184956" misc_feature complement(order(3284927..3284929,3284933..3284935, 3284945..3284947,3285116..3285133,3285137..3285157, 3285161..3285166,3285176..3285184,3285188..3285199, 3285221..3285226,3285233..3285235,3285245..3285259, 3285443..3285445,3285452..3285469,3285473..3285475, 3285494..3285496)) /gene="yraL" /locus_tag="SF3187" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381175" misc_feature complement(order(3284855..3284863,3284948..3284959, 3285035..3285040,3285113..3285115,3285158..3285160, 3285170..3285175,3285242..3285250,3285257..3285265, 3285323..3285325,3285479..3285481)) /gene="yraL" /locus_tag="SF3187" /note="putative active site [active]" /db_xref="CDD:381175" misc_feature complement(order(3284855..3284863,3284942..3284944, 3284948..3284953,3284957..3284959,3285032..3285037, 3285110..3285112,3285170..3285175,3285242..3285250, 3285257..3285265,3285479..3285481)) /gene="yraL" /locus_tag="SF3187" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:381175" gene 3285606..3287642 /gene="yraM" /locus_tag="SF3188" /db_xref="GeneID:1027136" CDS 3285606..3287642 /gene="yraM" /locus_tag="SF3188" /note="Code: R; COG: COG3107" /codon_start=1 /transl_table=11 /product="glycosylase" /protein_id="NP_708948.2" /db_xref="GeneID:1027136" /translation="MVPSTFSRLKAARCLPVVLAALIFAGCGTHTPDQSTAYMQGTAQ ADSAFYLQQMQQSSDDTRINWQLLAIRALVKEGKTGQAVELFNQLPQELNDSQRREKT LLAAEIKLAQKDFAGAQNLLAKITPADLEQNQQARYWQAKIDASQGRPSIDLLRALIA QEPLLGAKEKQQNIDATWQALSSMTQEQANTLVINADENILQGWLDLQRVWFDNRNDP DMMKAGIADWQKRYPNNPGAKMLPTQLVNVKAFKPASTNKIALLLPLNGQAAVFGRTI QQGFEAAKNIGTQPVAAQVAAAPAADVAEQPQPQTADSVASPAQASVSDLTGDQPAAQ PVPVSAPATSTAAVSAPANPSAELKIYDTSSQPLSQILSQVQQDGASIVVGPLLKNNV EELLKSNTPLNVLALNQPENIENRVNICYFALSPEDEARDAARHIRDQGKQAPLVLIP RSALGDRVANAFAQEWQKLGGGTVLQQKFGSTSELRAGVNGGSGIALTGSPITPRATT DSGMTTNNPTLQTTPTDDQFTNNGGRVDAVYIVATPGEIAFIKPMIAMRNGSQSGATL YASSRSAQGTAGPDFRLEMEGLQYSEIPMLAGGNLPLMQQALSAVNNDYSLARMYAMG VDAWSLANHFSQMRQVQGFEINGNTGSLTANPDCVINRKLSWLQYQQGQVVPAS" misc_feature 3285606..3287639 /gene="yraM" /locus_tag="SF3188" /note="Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis]; Region: LpoA; COG3107" /db_xref="CDD:442341" misc_feature 3285801..3285881 /gene="yraM" /locus_tag="SF3188" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" misc_feature 3285900..3285986 /gene="yraM" /locus_tag="SF3188" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" gene 3287600..3287995 /gene="yraN" /locus_tag="SF3189" /db_xref="GeneID:1027125" CDS 3287600..3287995 /gene="yraN" /locus_tag="SF3189" /note="Code: L; COG: COG0792" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708949.1" /db_xref="GeneID:1027125" /translation="MATVPTRSGSPRQLTTKQTGDAWEAQARRWLEGKGLRFIAANVN ERGGEIDLIMREGLTTVFVEVRYRRSALYGGAAASVTRSKQHKLLQTARLWLARHNGS FDTVDCRFDVVAFTGNEVEWIKDAFNDHS" misc_feature 3287621..3287983 /gene="yraN" /locus_tag="SF3189" /note="TIGR00252 family protein; Region: TIGR00252" /db_xref="CDD:129354" gene 3288015..3288605 /gene="yraO" /locus_tag="SF3190" /db_xref="GeneID:1024422" CDS 3288015..3288605 /gene="yraO" /locus_tag="SF3190" /note="Code: G; COG: COG0279" /codon_start=1 /transl_table=11 /product="chromosome replication initiator DnaA" /protein_id="NP_708950.1" /db_xref="GeneID:1024422" /translation="MQERIKACFTESIQTQIAAAEALPDAISRAAMTLVQSLLNGNKI LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE IRIPSHRSARIQEMHMLTVNCLCDLIDNTLFPHQDD" misc_feature 3288015..3288602 /gene="yraO" /locus_tag="SF3190" /note="DnaA initiator-associating protein DiaA; Provisional; Region: PRK10886" /db_xref="CDD:182811" misc_feature order(3288048..3288050,3288060..3288062,3288096..3288098, 3288105..3288107,3288165..3288167,3288183..3288188, 3288528..3288533,3288543..3288545,3288552..3288554, 3288564..3288566,3288576..3288578) /gene="yraO" /locus_tag="SF3190" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240139" misc_feature order(3288159..3288167,3288363..3288371,3288378..3288380, 3288516..3288518,3288528..3288530) /gene="yraO" /locus_tag="SF3190" /note="active site" /db_xref="CDD:240139" gene 3288615..3289190 /gene="yraP" /locus_tag="SF3191" /db_xref="GeneID:1027140" CDS 3288615..3289190 /gene="yraP" /locus_tag="SF3191" /note="Code: R; COG: COG2823" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_708951.1" /db_xref="GeneID:1027140" /translation="MKALSPIAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ VDDGTLEVRVNSALSKDEQIKKETRINVTAYQGKVLLVGQSPNAELSARAKQIAMGVD GANEVYNEIRQGQPIGLGEASNDTWITTKVRSQLLTSDLVKSSNVKVTTENGEVFLMG LVTEREAKAAADIASRVSGVKRVTTAFTFIK" misc_feature 3288615..3289187 /gene="yraP" /locus_tag="SF3191" /note="divisome-associated lipoprotein YraP; Region: PRK11023" /db_xref="CDD:182907" gene complement(3289304..3290344) /gene="yraQ" /locus_tag="SF3192" /db_xref="GeneID:1027158" CDS complement(3289304..3290344) /gene="yraQ" /locus_tag="SF3192" /note="Code: R; COG: COG0701" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708952.1" /db_xref="GeneID:1027158" /translation="MTGQSSSQAATPIQWWKPALFFLVVIAGLWYVKWQPYYGKAFTA AETHSIGKSILAQADANPWQAALDYAMIYFLAVWKAAVLGVILGSLIQVLIPRDWLLR TLGQSRFRGTLLGTLFSLPGMMCTCCAAPVAAGMRRQQVSMGGALAFWMGNPVLNPAT LVFMGFVLGWGFAAIRLVAGLVMVLLIATLVQKWVRETPQTQAPVEIDIPEAQSGFFS RWGRALWTLFWSTIPVYILAVLVLGAARVWLFPHADGAVDNSLMWVVAMAVAGCLFVI PTAAEIPIVQTMMLAGMGTAPALALLMTLPAVSLPSLIMLRKAFPAKALWLTGAMVAV SGVIVGGLALLF" misc_feature complement(3289325..3290170) /gene="yraQ" /locus_tag="SF3192" /note="Uncharacterized membrane protein YraQ, UPF0718 family [Function unknown]; Region: YraQ; COG0701" /db_xref="CDD:440465" gene complement(3290417..3291097) /gene="yraR" /locus_tag="SF3193" /db_xref="GeneID:1027137" CDS complement(3290417..3291097) /gene="yraR" /locus_tag="SF3193" /note="Code: MG; COG: COG0702" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708953.1" /db_xref="GeneID:1027137" /translation="MSRGAQGRQFCKGTKMSQVLITGATGLVGGHLLRMLINEPKVNA IAAPTRRPLGDMPGVFNPHDPQLSDALAQVTEPIDIVFCCLGTTRREAGSKEAFIHAD YTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPKLTIAR PSMLLGDRSKQRMNETLFAPLFRLLPGNWKSIDARDVARVMLAEAMRPEHEGVTILSS SELRKRAE" misc_feature complement(3290435..3291043) /gene="yraR" /locus_tag="SF3193" /note="A large family of proteins that share a Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The NADB domain is found in numerous dehydrogenases of metabolic pathways such as glycolysis, and many other redox enzymes. NAD binding involves numerous...; Region: Rossmann-fold NAD(P)(+)-binding proteins; cl21454" /db_xref="CDD:473865" misc_feature complement(order(3290606..3290617,3290675..3290677, 3290687..3290689,3290720..3290728,3290840..3290848, 3290945..3290953,3291014..3291016,3291020..3291025, 3291029..3291031)) /gene="yraR" /locus_tag="SF3193" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187535" misc_feature complement(order(3290675..3290677,3290687..3290689, 3290720..3290722,3290792..3290794)) /gene="yraR" /locus_tag="SF3193" /note="active site" /db_xref="CDD:187535" gene 3291138..3291698 /gene="yhbO" /locus_tag="SF3194" /db_xref="GeneID:1027127" CDS 3291138..3291698 /gene="yhbO" /locus_tag="SF3194" /note="Code: R; COG: COG0693" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708954.1" /db_xref="GeneID:1027127" /translation="MENSPHPMQQRGGSMSKKIAVLITDEFEDSEFTSPADEFRKAGH EVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYLRGDNRFVT FTRDFVNSGKPVFAICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGVEFYDQEVVVD KDQLVTSRTPDDLPAFNREALRLLGA" misc_feature 3291189..3291692 /gene="yhbO" /locus_tag="SF3194" /note="intracellular protease, PfpI family; Region: PfpI; TIGR01382" /db_xref="CDD:273591" misc_feature 3291489..3291494 /gene="yhbO" /locus_tag="SF3194" /note="proposed catalytic triad [active]" /db_xref="CDD:153228" misc_feature 3291489..3291491 /gene="yhbO" /locus_tag="SF3194" /note="conserved cys residue [active]" /db_xref="CDD:153228" gene complement(3291678..3292121) /gene="yhbP" /locus_tag="SF3195" /db_xref="GeneID:1027138" CDS complement(3291678..3292121) /gene="yhbP" /locus_tag="SF3195" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708955.1" /db_xref="GeneID:1027138" /translation="METLIAISRWLAKQHVVTWCVQQEGELWCANAFYLFDAQKVAFY ILTEEKTRHAQMSGPQAAVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDLARKAYN RRFPVARMLSAPVWEIRLDEIKFTDNTLGFGKKMIWLRDSGTEQA" misc_feature complement(3291699..3292121) /gene="yhbP" /locus_tag="SF3195" /note="hypothetical protein; Provisional; Region: PRK03467" /db_xref="CDD:235127" gene 3292172..3292474 /gene="yhbQ" /locus_tag="SF3196" /db_xref="GeneID:1027134" CDS 3292172..3292474 /gene="yhbQ" /locus_tag="SF3196" /note="Code: L; COG: COG2827" /codon_start=1 /transl_table=11 /product="GIY-YIG nuclease superfamily protein" /protein_id="NP_708956.2" /db_xref="GeneID:1027134" /translation="MTPWFLYLIRTADNKLYTGITTDVERRYQQHQSGKGAKALRGKG ELTLAFSAPVGDRSLALRAEYRVKQLTKRQKERLVAEGAGFAELLSSLQTPEIKSD" misc_feature 3292172..3292417 /gene="yhbQ" /locus_tag="SF3196" /note="GIY-YIG nuclease superfamily protein; Validated; Region: PRK00329" /db_xref="CDD:178979" misc_feature order(3292184..3292192,3292220..3292228) /gene="yhbQ" /locus_tag="SF3196" /note="GIY-YIG motif/motif A; other site" /db_xref="CDD:198403" misc_feature order(3292190..3292192,3292220..3292222,3292226..3292228, 3292250..3292252,3292262..3292264,3292361..3292363) /gene="yhbQ" /locus_tag="SF3196" /note="putative active site [active]" /db_xref="CDD:198403" misc_feature 3292361..3292363 /gene="yhbQ" /locus_tag="SF3196" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:198403" gene complement(3292461..3292964) /gene="yhbS" /locus_tag="SF3197" /db_xref="GeneID:1027172" CDS complement(3292461..3292964) /gene="yhbS" /locus_tag="SF3197" /note="Code: R; COG: COG3153" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708957.1" /db_xref="GeneID:1027172" /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL VATDDEGQVIGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNE FGYAAVVTLGDPALYSRFGFELAAHHDLRCRWPGTESAFLVHRLADDALNGVTGLVEY HEHFNRF" misc_feature complement(3292527..3292958) /gene="yhbS" /locus_tag="SF3197" /note="Predicted N-acetyltransferase YhbS [General function prediction only]; Region: yhbS; COG3153" /db_xref="CDD:442387" gene complement(3292958..3293482) /gene="yhbT" /locus_tag="SF3198" /db_xref="GeneID:1027171" CDS complement(3292958..3293482) /gene="yhbT" /locus_tag="SF3198" /note="Code: I; COG: COG3154" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708958.2" /db_xref="GeneID:1027171" /translation="MLDKLRSRIVHLGPSLLSVPVKLTPFALKRQVLEQVLSWQFRQA LDDGELEFLEGRWLSIHVRDIDLQWFTSVVNGKLVVSQNTQADVSFSADASDLLMIAA RKQDPDTLFFQRRLVIEGDTELGVYVKNLMDAIELEQMPKALRMMLLQLADFVEAGMK TAPETKQTSVGEPC" misc_feature complement(3292988..3293464) /gene="yhbT" /locus_tag="SF3198" /note="Ubiquinone biosynthesis accessory factor UbiT, lipid carrier SCP2 domain [Coenzyme transport and metabolism]; Region: UbiT; COG3154" /db_xref="CDD:442388" gene 3293691..3294686 /gene="yhbU" /locus_tag="SF3199" /db_xref="GeneID:1027130" CDS 3293691..3294686 /gene="yhbU" /locus_tag="SF3199" /note="Code: O; COG: COG0826" /codon_start=1 /transl_table=11 /product="collagenase" /protein_id="NP_708959.2" /db_xref="GeneID:1027130" /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY AAERYPHIERHVSVQASATNEEAINFYHRHFDVARVVLPRVLSIHQVKQLARVTPVPL EVFAFGSLCIMSEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNEVLID RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR SPAYVSQVAKVWRQAIDRCKADPQNFVPQSAWMETLGSMSEGTQTTLGAYHRKWQ" misc_feature 3293691..3294674 /gene="yhbU" /locus_tag="SF3199" /note="23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family [Translation, ribosomal structure and biogenesis]; Region: RlhA; COG0826" /db_xref="CDD:440588" gene 3294695..3295573 /gene="yhbV" /locus_tag="SF3200" /db_xref="GeneID:1027144" CDS 3294695..3295573 /gene="yhbV" /locus_tag="SF3200" /note="Code: O; COG: COG0826" /codon_start=1 /transl_table=11 /product="protease" /protein_id="NP_708960.1" /db_xref="GeneID:1027144" /translation="MKYSLGPVLWYWPKETLEDFYQQAAASSADVIYLGEAVCSKRRA TKVGDCLEMAKSLAGSGKQIVLSTLALVQASSELGELKRYVENGEFLIEASDLGVVNM CAERKLPFVAGHALNCYNAVTLKILLKQGMMRWCMPVELSRDWLVNLLNQCDELGIRN QFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRNVLSQENQQVFVLN GIQTMSGYVYNLGNELASMQGLVDVVRLSPQGTDTFAMLDAFRANENGAVPLPLTANS DCNGYWRRLAGLELQA" misc_feature 3294695..3295570 /gene="yhbV" /locus_tag="SF3200" /note="putative protease; Provisional; Region: PRK15447" /db_xref="CDD:237968" gene 3295654..3296661 /gene="yhbW" /locus_tag="SF3201" /db_xref="GeneID:1026850" CDS 3295654..3296661 /gene="yhbW" /locus_tag="SF3201" /note="Code: C; COG: COG2141" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708961.1" /db_xref="GeneID:1026850" /translation="MTDKTIAFSLLDLAPIPEGSSAREAFSHSLDLARLAEKRGYHRY WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHLPLVIAEQFGTLNTLY PGRIDLGLGRAPGSDQRTMMALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG YGEKIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRSNFKPSARLEKP YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIQNMDQFWSPSEQYDV QQALSMSLVGDKAKVRHGLQSILRETDADEIMVNGQIFDHQARLHSFELAMDVKEELL G" misc_feature 3295654..3296652 /gene="yhbW" /locus_tag="SF3201" /note="luciferase-like monooxygenase; Region: PRK10508" /db_xref="CDD:182505" gene complement(3296779..3298023) /gene="mtr" /locus_tag="SF3202" /db_xref="GeneID:1027142" CDS complement(3296779..3298023) /gene="mtr" /locus_tag="SF3202" /note="Code: E; COG: COG0814" /codon_start=1 /transl_table=11 /product="tryptophan permease" /protein_id="NP_708962.1" /db_xref="GeneID:1027142" /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS MAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL TYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLSTKAVSRMTAIVLGAK VITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYY GKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGV LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAVGRLKTALLTFAPPV VGGLLFPNGFLYAIGYAGLAATIWAAIVPALLARASRKRFGSPKFRVWGGKPMIALIL VFGVGNALVHILSSFNLLPVYQ" misc_feature complement(3296782..3298023) /gene="mtr" /locus_tag="SF3202" /note="tryptophan permease; Provisional; Region: PRK10483" /db_xref="CDD:182492" gene complement(3298177..3300117) /gene="deaD" /locus_tag="SF3203" /db_xref="GeneID:1027133" CDS complement(3298177..3300117) /gene="deaD" /locus_tag="SF3203" /note="Code: LKJ; COG: COG0513" /codon_start=1 /transl_table=11 /product="inducible ATP-independent RNA helicase" /protein_id="NP_708963.4" /db_xref="GeneID:1027133" /translation="MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYE KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRE LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRF MKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATL EVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN AELLGKRRLEKFAAKVQQQLESSDLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQ GERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREDRPRRERRDVGDMQLYRI EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTR ILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERREGGRNFSGERREGGRGDGRRFSGE RREGRAPRRDDSTGRRRFGGDA" misc_feature complement(3298180..3300066) /gene="deaD" /locus_tag="SF3203" /note="ATP-dependent RNA helicase DeaD; Provisional; Region: PRK11634" /db_xref="CDD:236941" gene complement(3300246..3301130) /gene="yhbM" /locus_tag="SF3204" /db_xref="GeneID:1027139" CDS complement(3300246..3301130) /gene="yhbM" /locus_tag="SF3204" /note="Code: R; COG: COG0457" /codon_start=1 /transl_table=11 /product="lipoprotein NlpI" /protein_id="NP_708964.2" /db_xref="GeneID:1027139" /translation="MKPFLRWCFVATALTLAGCSNTSWRKSEVLAVPLQPTLQQEVIL ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMER LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL ELSLLGQDQDDLAESDQQ" misc_feature complement(3300249..3301130) /gene="yhbM" /locus_tag="SF3204" /note="lipoprotein NlpI; Provisional; Region: PRK11189" /db_xref="CDD:236875" misc_feature complement(3300861..3300947) /gene="yhbM" /locus_tag="SF3204" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(order(3300705..3300707,3300714..3300719, 3300726..3300731,3300738..3300740,3300807..3300812, 3300816..3300821,3300828..3300833,3300840..3300842, 3300912..3300914,3300918..3300923,3300930..3300935, 3300942..3300944)) /gene="yhbM" /locus_tag="SF3204" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(3300756..3300848) /gene="yhbM" /locus_tag="SF3204" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(3300672..3300743) /gene="yhbM" /locus_tag="SF3204" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene complement(3301239..3303443) /gene="pnp" /locus_tag="SF3205" /db_xref="GeneID:1025664" CDS complement(3301239..3303443) /gene="pnp" /locus_tag="SF3205" /note="Code: J; COG: COG1185" /codon_start=1 /transl_table=11 /product="polynucleotide phosphorylase" /protein_id="NP_708965.2" /db_xref="GeneID:1025664" /translation="MRRRSGINTSAVRYCLRKRKDITLLNPIVRKFQYGQHTVTLETG MMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFR REGRPSEGETLIARLIDRPIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAA LSLSGIPFNGPIGAARVGYINDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAEL LSEDQMLGAVVFGHEQQQVVIQNINELVKEAGKPRWDWQPEPVNEALNARVAALAEAR LSDAYRITDKQERYAQVDVIKSETIATLLAEDETLDENELGEILHAIEKNVVRSRVLA GEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQVLDELM GERTDTFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRV VSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDE DHLGDMDFKVAGSREGISALQMDIKIEGITKEIMQVALNQAKGARLHILGVMEQAINA PRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATD GEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRV EKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQPAAAPEAPAAEQGE" misc_feature complement(3301299..3303368) /gene="pnp" /locus_tag="SF3205" /note="polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824" /db_xref="CDD:236995" gene complement(3303621..3303890) /gene="rpsO" /locus_tag="SF3206" /db_xref="GeneID:1027108" CDS complement(3303621..3303890) /gene="rpsO" /locus_tag="SF3206" /note="Code: J; COG: COG0184" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S15" /protein_id="NP_708966.1" /db_xref="GeneID:1027108" /translation="MSLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFA EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTQLIERLGLRR" misc_feature complement(3303624..3303890) /gene="rpsO" /locus_tag="SF3206" /note="30S ribosomal protein S15; Reviewed; Region: rpsO; PRK05626" /db_xref="CDD:180170" misc_feature complement(order(3303684..3303686,3303696..3303698, 3303735..3303740,3303744..3303749,3303753..3303755, 3303765..3303767,3303774..3303776,3303786..3303788, 3303807..3303809,3303816..3303818,3303867..3303869)) /gene="rpsO" /locus_tag="SF3206" /note="16S/18S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:238213" misc_feature complement(order(3303639..3303641,3303651..3303653, 3303771..3303773,3303780..3303782,3303789..3303794, 3303801..3303803)) /gene="rpsO" /locus_tag="SF3206" /note="S13e-L30e interaction site [polypeptide binding]; other site" /db_xref="CDD:238213" misc_feature complement(order(3303633..3303638,3303699..3303701, 3303711..3303713)) /gene="rpsO" /locus_tag="SF3206" /note="25S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:238213" gene complement(3304039..3304983) /gene="truB" /locus_tag="SF3207" /db_xref="GeneID:1027141" CDS complement(3304039..3304983) /gene="truB" /locus_tag="SF3207" /note="Code: J; COG: COG0130" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine synthase B" /protein_id="NP_708967.1" /db_xref="GeneID:1027141" /translation="MSRPRRRGRDINGVLLLDKPQGMSSNDALQKVKRIYNANRAGHT GALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVEERPVT FSAEQLAAALDTFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF IRHEGNELELEIHCSKGTYIRTIIDDLGEKLGCGAHVIYLRRLAVSKYPVERIVTLEH LRELVEQAEQQDIPAAELLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTSGAP LEGLVRVTEGENGKFIGMGEIDDEGRVAPRRLVVEYPA" misc_feature complement(3304051..3304947) /gene="truB" /locus_tag="SF3207" /note="tRNA U55 pseudouridine synthase TruB, may also work on U342 of tmRNA [Translation, ribosomal structure and biogenesis]; Region: TruB; COG0130" /db_xref="CDD:439900" gene complement(3304983..3305384) /gene="rbfA" /locus_tag="SF3208" /db_xref="GeneID:1027155" CDS complement(3304983..3305384) /gene="rbfA" /locus_tag="SF3208" /note="Code: J; COG: COG0858" /codon_start=1 /transl_table=11 /product="ribosome-binding factor A" /protein_id="NP_708968.2" /db_xref="GeneID:1027155" /translation="MAKEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMS RDLAYAKVYVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS LVEGMRMSNLVTSVVKHDEERRVNPDDSKED" misc_feature complement(3305016..3305384) /gene="rbfA" /locus_tag="SF3208" /note="30S ribosome-binding factor RbfA; Region: rbfA; PRK00521" /db_xref="CDD:234787" gene complement(3305548..3308196) /gene="infB" /locus_tag="SF3209" /db_xref="GeneID:1027145" CDS complement(3305548..3308196) /gene="infB" /locus_tag="SF3209" /note="Code: J; COG: COG0532" /codon_start=1 /transl_table=11 /product="translation initiation factor IF-2" /protein_id="NP_708969.1" /db_xref="GeneID:1027145" /translation="MTDVTIKTLAAERQTSVERLVQQFADAGIRKSADDSVSAQEKQT LIDHLNQKNSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAERL AAEEQARREAEESAKREAQQKAEREAAEQAKREAAEQAKREAAEKDKVSNQQDDMTKN AQAEKARREQEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWTDNAEPTEDSS DYHVTTSQHARQAEDESDREVEGGRGRGRNAKAARPKKGNKHAESKADREEARAAVRG GKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQVIKAMMKLGAM ATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPRAPVVTIMGHV DHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARG AQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVKNELSQ YGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGMASGAVIESFL DKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGPSIPVEILGLS GVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFANMTEGEVHEVN IVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAASNAILVGFNV RADASARKVIEAESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKS PKFGAIAGCMVTEGVVKRHNPIRVLRDNVVIYEGELESLRRFKDDVNEVRNGMECGIG VKNYNDVRTGDVIEVFEIIEIQRTIA" misc_feature complement(3307915..3308031) /gene="infB" /locus_tag="SF3209" /note="Bacterial translation initiation factor IF-2 associated region; Region: IF2_assoc; pfam08364" /db_xref="CDD:429947" misc_feature complement(3307057..>3307947) /gene="infB" /locus_tag="SF3209" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature complement(3307129..3307281) /gene="infB" /locus_tag="SF3209" /note="Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760" /db_xref="CDD:428110" misc_feature complement(3305554..3307059) /gene="infB" /locus_tag="SF3209" /note="Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]; Region: InfB; COG0532" /db_xref="CDD:440298" gene complement(3308221..3309708) /gene="nusA" /locus_tag="SF3210" /db_xref="GeneID:1027147" CDS complement(3308221..3309708) /gene="nusA" /locus_tag="SF3210" /note="Code: K; COG: COG0195" /codon_start=1 /transl_table=11 /product="transcription elongation factor NusA" /protein_id="NP_708970.1" /db_xref="GeneID:1027147" /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID VRVQIDRKSGDFDTFRRWLVVDEVTQPTKEITLEAARYEDESLNLGDYVEDQIESVTF DRITTQTAKQVIVQKVREAERAMVVDQFREHEGEIITGVVKKVNRDNISLDLGNNAEA VILREDMLPRENFRPGDRVRGVLYSVRPEARGAQLFVTRSKPEMLIELFRIEVPEIGE EVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERIDIVLW DDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGW ELNVMTVDDLQAKHQAEAHAAIDTFTKYLDIDEDFATVLVEEGFSTLEELAYVPMKEL LEIEGLDEPTVEALRERAKNALATIAQAQEESLGDNKPADDLLNLEGVDRDLAFKLAA RGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAARNICWFGDEA" misc_feature complement(3308281..3309708) /gene="nusA" /locus_tag="SF3210" /note="transcription elongation factor NusA; Validated; Region: nusA; PRK09202" /db_xref="CDD:236410" gene complement(3309736..3310194) /gene="yhbC" /locus_tag="SF3211" /db_xref="GeneID:1027146" CDS complement(3309736..3310194) /gene="yhbC" /locus_tag="SF3211" /note="Code: S; COG: COG0779" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708971.4" /db_xref="GeneID:1027146" /translation="MGLSTLEQKLTEMITAPVEALGFELVGIEFIRGRTSTLRIYIDS EDGINVDDCADVSHQVSAVLDVEDPITVAYNLEVSSPGLDRPLFTAEHYARFVGEEVT LVLRMAVQNRRKWQGVIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF" misc_feature complement(3309739..3310188) /gene="yhbC" /locus_tag="SF3211" /note="Sm and related proteins; Region: Sm_like; cl00259" /db_xref="CDD:469694" misc_feature complement(order(3309754..3309771,3309775..3309780, 3309784..3309789,3309811..3309813,3309832..3309834, 3309850..3309852,3309856..3309858,3309877..3309879, 3309883..3309885)) /gene="yhbC" /locus_tag="SF3211" /note="putative oligomer interface [polypeptide binding]; other site" /db_xref="CDD:212481" misc_feature complement(order(3309778..3309780,3309820..3309822, 3309826..3309828)) /gene="yhbC" /locus_tag="SF3211" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:212481" misc_feature 3310371..3310733 /note="potential protein location (hypothetical protein SF3212 [Shigella flexneri 2a str. 301]) that overlaps RNA (tRNA-M)" gene complement(3310395..3310471) /locus_tag="SF4509" /db_xref="GeneID:3161817" tRNA complement(3310395..3310471) /locus_tag="SF4509" /product="tRNA-Met" /codon_recognized="AUG" /db_xref="GeneID:3161817" gene 3310819..3312162 /gene="argG" /locus_tag="SF3213" /db_xref="GeneID:1027111" CDS 3310819..3312162 /gene="argG" /locus_tag="SF3213" /note="Code: E; COG: COG0137" /codon_start=1 /transl_table=11 /product="argininosuccinate synthase" /protein_id="NP_708973.1" /db_xref="GeneID:1027111" /translation="MTTILKHLPVGQRIGIAFSGGLDTSAALLWMRQKGAVPYAYTAN LGQPDEEDYDAIPRRAMEYGAENARLIDCRKQLVAEGIAAIQCGAFHNTTGGLTYFNT TPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIERFYRYGLLTNAELQIYKPWLDT DFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSNMLGATHEAKDLEYLNSSVKIVN PIMGVKFWDESVKIPAEEVTVRFEQGHPVALNGKTFSDDVEMMLEANRIGGRHGLGMS DQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIHNEDTIEQYHAHGRQLGRLLYQG RWFDSQALMLRDSLQRWVASQITGEVTLELRRGNDYSILNTVSENLTYKPERLTMEKG DSVFSPDDRIGQLTMRNLDITDTREKLFGYAKTGLLSSSATSGLPQVENMENKGQ" misc_feature 3310819..3312156 /gene="argG" /locus_tag="SF3213" /note="argininosuccinate synthase; Validated; Region: PRK05370" /db_xref="CDD:235434" gene complement(3312170..3313814) /gene="yhbX" /locus_tag="SF3214" /pseudo /db_xref="GeneID:1026851" misc_feature complement(3312170..3313814) /gene="yhbX" /locus_tag="SF3214" /note="Similar to Escherichia coli K12 alkaline phosphatase I gi: 1789564 (548 aa). BLAST with identity of 99% in 548 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(3314255..3314341) /locus_tag="SF4510" /db_xref="GeneID:3161814" tRNA complement(3314255..3314341) /locus_tag="SF4510" /product="tRNA-Leu" /codon_recognized="CUC" /db_xref="GeneID:3161814" gene complement(3314356..3314688) /gene="secG" /locus_tag="SF3215" /db_xref="GeneID:1027143" CDS complement(3314356..3314688) /gene="secG" /locus_tag="SF3215" /note="Code: N; COG: COG1314" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecG" /protein_id="NP_708974.1" /db_xref="GeneID:1027143" /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG SSGSGNFMTRMTALLATLFFIISLVLGNINSNKTNRGSEWENLSAPAKTEQTQPAAPA KPTSDIPN" misc_feature complement(3314416..3314688) /gene="secG" /locus_tag="SF3215" /note="Protein translocase subunit SecG [Intracellular trafficking, secretion, and vesicular transport]; Region: SecG; COG1314" /db_xref="CDD:440925" gene complement(3314915..3316252) /gene="glmM" /locus_tag="SF3216" /db_xref="GeneID:1024974" CDS complement(3314915..3316252) /gene="glmM" /locus_tag="SF3216" /note="Code: G; COG: COG1109" /codon_start=1 /transl_table=11 /product="phosphoglucosamine mutase" /protein_id="NP_708975.1" /db_xref="GeneID:1024974" /translation="MSNRKYFGTDGIRGRVGDAPITPDFVLKLGWAAGKVLARHGSRK IIIGKDTRISGYMLESALEAGLAAAGLSALFTGPMPTPAVAYLTRTFRAEAGIVISAS HNPFYDNGIKFFSIDGTKLPDAVEEAIEAEMEKEISCVDSAELGKASRIVDAAGRYIE FCKATFPNELSLSELKIVVDCANGATYHIAPNVLRELGANVIAIGCEPNGVNINAEVG ATDVRALQARVLAEKADLGIAFDGDGDRVIMVDHEGNKVYGDQIMYIIAREGLRQGHL RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKMQEKGWRIGAENSGHVILLD KTTTGAGIVAGLQVLTAMARNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLEHESVK AVTAEVEAALGNRGRVLLRKSGTEPLIRVMVEGEDAAQVTEFAHRITDAVKAV" misc_feature complement(3314918..3316243) /gene="glmM" /locus_tag="SF3216" /note="phosphoglucosamine mutase; Provisional; Region: glmM; PRK10887" /db_xref="CDD:236787" misc_feature complement(order(3314993..3314995,3315008..3315016, 3315020..3315022,3315266..3315268,3315272..3315274, 3315278..3315280,3315329..3315337,3315398..3315400, 3315515..3315520,3315524..3315526,3315530..3315532, 3315917..3315919,3315941..3315949,3316214..3316216, 3316223..3316225,3316229..3316231)) /gene="glmM" /locus_tag="SF3216" /note="active site" /db_xref="CDD:100095" misc_feature complement(order(3314993..3314995,3315008..3315016, 3315020..3315022,3315266..3315268,3315272..3315274, 3315278..3315280,3315329..3315331,3315335..3315337, 3315398..3315400,3315515..3315517,3315947..3315949, 3316223..3316225)) /gene="glmM" /locus_tag="SF3216" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100095" misc_feature complement(order(3315518..3315520,3315524..3315526, 3315530..3315532,3315947..3315949)) /gene="glmM" /locus_tag="SF3216" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100095" gene complement(3316245..3317138) /gene="folP" /locus_tag="SF3217" /db_xref="GeneID:1027106" CDS complement(3316245..3317138) /gene="folP" /locus_tag="SF3217" /note="Code: H; COG: COG0294" /codon_start=1 /transl_table=11 /product="7,8-dihydropteroate synthase" /protein_id="NP_708976.4" /db_xref="GeneID:1027106" /translation="MLRGFFLSIHTRDNIMKLFAQGTSLDLSHPHVMGILNVTPDSFS DGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQ RFEVWISVDTSKPEVIRESAKVGAHIINDIRSLSEPGALEAAAETGLPVCLMHMQGNP KTMQEAPKYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLAR LAEFHHFNLPLLVGMSRKSMIGQLLNVGPSERLSGSLACAVIAAMQGAHIIRVHDVKE TVEAMRVVEATLSAKENKRYE" misc_feature complement(3316248..3317093) /gene="folP" /locus_tag="SF3217" /note="dihydropteroate synthase; Provisional; Region: folP; PRK11613" /db_xref="CDD:183230" misc_feature complement(order(3316323..3316325,3316329..3316331, 3316431..3316433,3316443..3316445,3316539..3316541, 3316677..3316679,3316743..3316745,3316749..3316751, 3316806..3316808,3317028..3317030)) /gene="folP" /locus_tag="SF3217" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:238380" misc_feature complement(order(3316299..3316304,3316347..3316349, 3316359..3316361,3316371..3316373,3316485..3316490, 3316500..3316502)) /gene="folP" /locus_tag="SF3217" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238380" misc_feature complement(3316431..3316439) /gene="folP" /locus_tag="SF3217" /note="inhibitor binding site [active]" /db_xref="CDD:238380" gene complement(3317183..3319117) /gene="hflB" /locus_tag="SF3218" /db_xref="GeneID:1027156" CDS complement(3317183..3319117) /gene="hflB" /locus_tag="SF3218" /note="Code: O; COG: COG0465" /codon_start=1 /transl_table=11 /product="ATP-dependent metalloprotease" /protein_id="NP_708977.1" /db_xref="GeneID:1027156" /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNND QVREARINGREINVTKKDSNRYTTYIPVQDPKLLDNLLTKNVKVVGEPPEEPSLLASI FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH MRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP EGDAISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNLARNMVTQWG FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQLLTD NMDILHAMKDALMKYETIDAPQIDDLMARRDVRPPAGWEEPGASNNSGDNGSPKAPRP VDEPRTPNPGNTMSEQLGDK" misc_feature complement(3317186..3319117) /gene="hflB" /locus_tag="SF3218" /note="ATP-dependent zinc metalloprotease FtsH; Region: hflB; PRK10733" /db_xref="CDD:182683" gene complement(3319217..3319846) /gene="rrmJ" /locus_tag="SF3219" /db_xref="GeneID:1027113" CDS complement(3319217..3319846) /gene="rrmJ" /locus_tag="SF3219" /note="Code: J; COG: COG0293" /codon_start=1 /transl_table=11 /product="23S rRNA methyltransferase" /protein_id="NP_708978.1" /db_xref="GeneID:1027113" /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRKP" misc_feature complement(3319223..3319846) /gene="rrmJ" /locus_tag="SF3219" /note="23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE; Region: rrmJ; PRK11188" /db_xref="CDD:183025" misc_feature complement(order(3319475..3319477,3319547..3319555, 3319595..3319600,3319655..3319675)) /gene="rrmJ" /locus_tag="SF3219" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 3319972..3320265 /gene="yhbY" /locus_tag="SF3220" /db_xref="GeneID:1027149" CDS 3319972..3320265 /gene="yhbY" /locus_tag="SF3220" /note="Code: J; COG: COG1534" /codon_start=1 /transl_table=11 /product="RNA-binding protein YhbY" /protein_id="NP_708979.1" /db_xref="GeneID:1027149" /translation="MNLSTKQKQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHH ELIKVKIATEDRETKTLIVEAIVRETGACNVQVIGKTLVLYRPTKERKISLPR" misc_feature 3319972..3320262 /gene="yhbY" /locus_tag="SF3220" /note="ribosome assembly RNA-binding protein YhbY; Region: PRK10343" /db_xref="CDD:182393" gene complement(3320421..3320897) /gene="greA" /locus_tag="SF3221" /db_xref="GeneID:1027148" CDS complement(3320421..3320897) /gene="greA" /locus_tag="SF3221" /note="Code: K; COG: COG0782" /codon_start=1 /transl_table=11 /product="transcription elongation factor GreA" /protein_id="NP_708980.1" /db_xref="GeneID:1027148" /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDSDEE QTYRIVGDDEADFKQNLISVNSPIARGLIGKEEDDVVVIKTPGGEVEFEVIKVEYL" misc_feature complement(3320427..3320897) /gene="greA" /locus_tag="SF3221" /note="transcription elongation factor GreA; Reviewed; Region: greA; PRK00226" /db_xref="CDD:234693" gene 3321145..3322578 /gene="dacB" /locus_tag="SF3222" /db_xref="GeneID:1027110" CDS 3321145..3322578 /gene="dacB" /locus_tag="SF3222" /note="Code: M; COG: COG2027" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase/endopeptidase" /protein_id="NP_708981.1" /db_xref="GeneID:1027110" /translation="MRFSRFIIGLTSCIAFSVQAANVDEYVTQLPAGANLALMVQKVG ASAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVENGVLKGDLV ARFGADPTLKRQDIRNMVATLKKSGVNQIDGNVLIDTSIFASHDKAPGWPWNDMTQCF SAPPAAAIVDRNCFSVSLYSAPKPGDMAFIRVASYYPVTMFSQVRTLPRGSAEAQYCE LDVVPSDLNRFTLTGCLPQRSEPLPLAFAVQDGASYAGAILKDELKQAGITWSGTLLR QTQVNEPGTVVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHARFNVPGTWRAGSD AVRQILRQQAGVDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV KPADQRNRRIPLVRFESRLYKDIYQNN" misc_feature 3321145..3322575 /gene="dacB" /locus_tag="SF3222" /note="D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional; Region: PRK11113" /db_xref="CDD:182972" gene complement(3322764..3323936) /gene="obgE" /locus_tag="SF3223" /db_xref="GeneID:1027132" CDS complement(3322764..3323936) /gene="obgE" /locus_tag="SF3223" /note="Code: R; COG: COG0536" /codon_start=1 /transl_table=11 /product="GTPase CgtA" /protein_id="NP_708982.1" /db_xref="GeneID:1027132" /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRELLLELMLLA DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDNEKSFVVADIPGLI EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGTDPVENARIIISELEKYSQDLAAK PRWLVFNKIDLLDKAEAEEKAKAIAEALGWEDKYYLISAASGLGVKDLCWDVMTFIIE NPVVQAEEAKQPEKVEFMWDDYHRQQLEEIAEEDDEDWDDDWDEDDEEGVEFIYKR" misc_feature complement(3322767..3323936) /gene="obgE" /locus_tag="SF3223" /note="GTPase CgtA; Reviewed; Region: obgE; PRK12298" /db_xref="CDD:237047" gene complement(3323952..3324917) /gene="yhbE" /locus_tag="SF3224" /db_xref="GeneID:1027118" CDS complement(3323952..3324917) /gene="yhbE" /locus_tag="SF3224" /note="Code: GER; COG: COG0697" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708983.1" /db_xref="GeneID:1027118" /translation="MKQQAGIGILLALTTAICWGALPIAMKQVLEVMEPPTIVFYRFL MASIGLGAILAVKKRLPPLRVFRKPRWLILLAVATAGLFGNFILFSSSLQYLSPTASQ VIGQLSPVGMMVASVFILKEKMRSTQVVGALMLLSGLVMFFNTSLVEIFTKLTDYTWG VIFGVGAATVWVSYGVAQKVLLRRLASPQILFLLYTLCTIALFPLAKPGVIAQLSHWQ LACLIFCGLNTLVGYGALAEAMARWQAAQVSAIITLTPLFTLFFSDLLSLAWPDFFAR PMLNLLGYLGAFVVVAGAMYSAIGHRIWGGLRKHTTVVSQPRAGE" misc_feature complement(3324012..3324896) /gene="yhbE" /locus_tag="SF3224" /note="Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:440461" gene complement(3325044..3325301) /gene="rpmA" /locus_tag="SF3225" /db_xref="GeneID:1027109" CDS complement(3325044..3325301) /gene="rpmA" /locus_tag="SF3225" /note="Code: J; COG: COG0211" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L27" /protein_id="NP_708984.1" /db_xref="GeneID:1027109" /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK FHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE" misc_feature complement(3325053..3325301) /gene="rpmA" /locus_tag="SF3225" /note="50S ribosomal protein L27; Validated; Region: rpmA; PRK05435" /db_xref="CDD:235464" gene complement(3325322..3325633) /gene="rplU" /locus_tag="SF3226" /db_xref="GeneID:1027114" CDS complement(3325322..3325633) /gene="rplU" /locus_tag="SF3226" /note="Code: J; COG: COG0261" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L21" /protein_id="NP_708985.1" /db_xref="GeneID:1027114" /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETVEFAEVLMIANG EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS A" misc_feature complement(3325325..3325633) /gene="rplU" /locus_tag="SF3226" /note="50S ribosomal protein L21; Validated; Region: rplU; PRK05573" /db_xref="CDD:235510" gene 3325891..3326862 /gene="ispB" /locus_tag="SF3227" /db_xref="GeneID:1024423" CDS 3325891..3326862 /gene="ispB" /locus_tag="SF3227" /note="Code: H; COG: COG0142" /codon_start=1 /transl_table=11 /product="octaprenyl diphosphate synthase" /protein_id="NP_708986.1" /db_xref="GeneID:1024423" /translation="MNLEKINELTAQDMAGVNAAILEQLNSDVQLINQLGYYIVSGGG KRIRPMIAVLAARAVGYEGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE ENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTAFQLIDDLLDYNA DGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQGNGRHLLEPVLEAMN ACGSLEWTRQRAEEEADKAIAALQVLPDTPWREALIGLAHIAVQRDR" misc_feature 3325891..3326859 /gene="ispB" /locus_tag="SF3227" /note="octaprenyl diphosphate synthase; Provisional; Region: PRK10888" /db_xref="CDD:182813" misc_feature order(3326116..3326118,3326125..3326133,3326137..3326145, 3326149..3326154,3326167..3326172,3326326..3326328, 3326335..3326337,3326398..3326403,3326410..3326412, 3326521..3326526,3326533..3326535,3326563..3326565, 3326578..3326580,3326593..3326595) /gene="ispB" /locus_tag="SF3227" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173833" misc_feature 3326125..3326154 /gene="ispB" /locus_tag="SF3227" /note="chain length determination region [active]" /db_xref="CDD:173833" misc_feature order(3326140..3326145,3326152..3326154,3326167..3326172, 3326335..3326337,3326398..3326400,3326521..3326526, 3326533..3326535,3326563..3326565,3326578..3326580, 3326593..3326595) /gene="ispB" /locus_tag="SF3227" /note="substrate-Mg2+ binding site [active]" /db_xref="CDD:173833" misc_feature order(3326140..3326145,3326152..3326154,3326167..3326172, 3326398..3326400,3326521..3326526) /gene="ispB" /locus_tag="SF3227" /note="catalytic residues [active]" /db_xref="CDD:173833" misc_feature order(3326140..3326145,3326152..3326154,3326167..3326172, 3326335..3326337,3326398..3326400) /gene="ispB" /locus_tag="SF3227" /note="aspartate-rich region 1; other site" /db_xref="CDD:173833" misc_feature order(3326158..3326202,3326542..3326547,3326563..3326580, 3326587..3326601) /gene="ispB" /locus_tag="SF3227" /note="active site lid residues [active]" /db_xref="CDD:173833" misc_feature order(3326521..3326526,3326533..3326535,3326563..3326565, 3326578..3326580,3326593..3326595) /gene="ispB" /locus_tag="SF3227" /note="aspartate-rich region 2; other site" /db_xref="CDD:173833" gene 3327089..3327367 /gene="nlp" /locus_tag="SF3228" /db_xref="GeneID:1027129" CDS 3327089..3327367 /gene="nlp" /locus_tag="SF3228" /note="Code: K; COG: COG3423" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator Nlp" /protein_id="NP_708987.1" /db_xref="GeneID:1027129" /translation="MESNFIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALSR PWPKGEMIIAKALGTDPWVIWPSRYHDPQTHEFIDRTQLMRSYTKPKK" misc_feature 3327089..3327364 /gene="nlp" /locus_tag="SF3228" /note="DNA-binding transcriptional regulator SfsB; Region: PRK10344" /db_xref="CDD:182394" gene complement(3327415..3328674) /gene="murA" /locus_tag="SF3229" /db_xref="GeneID:1027112" CDS complement(3327415..3328674) /gene="murA" /locus_tag="SF3229" /note="Code: M; COG: COG0766" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine 1-carboxyvinyltransferase" /protein_id="NP_708988.1" /db_xref="GeneID:1027112" /translation="MDKFRVQGPTKLQGEVTISGAKNAALPILFAALLAEEPVEIQNV PKLKDVDTSMKLLSQLGAKVERNGSVHIDARDVNVFCAPYDLVKTMRASIWALGPLVA RFGQGQVSLPGGCTIGARPVDLHISGLEQLGATIKLEEGYVKASVDGRLKGAHIVMDK VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLITLGAKISGQGTDRIVIEGV ERLGGGVYRVLPDRIETGTFLVAAAISRGKIICRNAQPDTLDAVLAKLRDAGADIEVG EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH VPELSRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRI YHIDRGYERIEDKLRALGANIERVKGE" misc_feature complement(3327427..3328674) /gene="murA" /locus_tag="SF3229" /note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated; Region: PRK09369" /db_xref="CDD:236486" misc_feature complement(order(3327982..3327993,3328612..3328623)) /gene="murA" /locus_tag="SF3229" /note="hinge; other site" /db_xref="CDD:238796" misc_feature complement(order(3327760..3327762,3328183..3328188, 3328195..3328197,3328300..3328317,3328390..3328392, 3328402..3328404,3328606..3328608)) /gene="murA" /locus_tag="SF3229" /note="active site" /db_xref="CDD:238796" gene complement(3328729..3328998) /gene="yrbA" /locus_tag="SF3230" /db_xref="GeneID:1027120" CDS complement(3328729..3328998) /gene="yrbA" /locus_tag="SF3230" /note="Code: T; COG: COG0271" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708989.1" /db_xref="GeneID:1027120" /translation="MIEDPMENNEIQSVLMNALSLQEVHVSGDGSHFQVIAVGELFDG MSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF" misc_feature complement(3328741..3328983) /gene="yrbA" /locus_tag="SF3230" /note="Acid stress protein IbaG/YrbA, BolA-like family [Signal transduction mechanisms]; Region: IbaG; COG5007" /db_xref="CDD:444031" gene complement(3329143..3329436) /gene="yrbB" /locus_tag="SF3231" /db_xref="GeneID:1026852" CDS complement(3329143..3329436) /gene="yrbB" /locus_tag="SF3231" /note="Code: R; COG: COG3113" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708990.2" /db_xref="GeneID:1026852" /translation="MSESLSWMQTGDTLALSGELDQDVLLPLWEMREEAVKGITCIDL SRVSRVDTGGLALLLHLIDLAKKQGNNVTLQGVNDKVYTLAKLYNLPADVLPR" misc_feature complement(3329149..3329430) /gene="yrbB" /locus_tag="SF3231" /note="lipid asymmetry maintenance protein MlaB; Region: mlaB_1; NF033618" /db_xref="CDD:411237" gene complement(3329436..3330071) /gene="yrbC" /locus_tag="SF3232" /db_xref="GeneID:1027122" CDS complement(3329436..3330071) /gene="yrbC" /locus_tag="SF3232" /note="Code: S; COG: COG2854" /codon_start=1 /transl_table=11 /product="ABC transporter substrate-binding protein MlaC" /protein_id="NP_708991.1" /db_xref="GeneID:1027122" /translation="MFKRLMMVALLVIAPLSAATAADQTNPYKLMDEAAQKTFDRLKN EQPQIRANPDYLRTIVDQELLPYVQVKYAGALVLGQYYKSATPAQREAYFAAFREYLK QAYGQALAMYHGQTYQIAPEQPLGDKTIVPIRVTIIDPNGRPPVRLDFQWRKNSQTGN WQAYDMIAEGVSMITTKQNEWGTLLRTKGIDGLTAQLKSISQQKITLEEKK" misc_feature complement(3329439..3330071) /gene="yrbC" /locus_tag="SF3232" /note="phospholipid-binding protein MlaC; Region: PRK15117" /db_xref="CDD:237912" gene complement(3330090..3330641) /gene="vpsC" /locus_tag="SF3233" /db_xref="GeneID:1027092" CDS complement(3330090..3330641) /gene="vpsC" /locus_tag="SF3233" /note="Code: R; COG: COG1463" /codon_start=1 /transl_table=11 /product="cytoplasmic membrane protein" /protein_id="NP_708992.2" /db_xref="GeneID:1027092" /translation="MQTKKNEIWVGIFLLAALLAALFVCLKAANVTSIRTESTYTLYA TFDNIGGLKARSPVSIGGVVVGRVADITLDPKTYLPRVTLEIEQRYNHIPDTSSLSIR TSGLLGEQYLALNVGFEDPELGTAILKDGDTIQDTKSAMVLEDLIGQFLYGSKGDDNK NSGDAPAAAPGNNETTEPVGTTK" misc_feature complement(3330183..3330638) /gene="vpsC" /locus_tag="SF3233" /note="outer membrane lipid asymmetry maintenance protein MlaD; Region: OM_asym_MlaD; TIGR04430" /db_xref="CDD:275223" gene complement(3330646..3331428) /gene="vpsB" /locus_tag="SF3234" /db_xref="GeneID:1027117" CDS complement(3330646..3331428) /gene="vpsB" /locus_tag="SF3234" /note="Code: R; COG: COG0767" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_708993.1" /db_xref="GeneID:1027117" /translation="MLLNALASLGHKGIKTLRTFGRAGLMLFNALVGKPEFRKHAPLL VRQLYNVGVLSMLIIVVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTV IFVAVGIWGGSLVGVSWKGIDSGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWISL FNGYDAIPTSAGISRATTRTVVHSSLAVLGLDFVLTALMFGN" misc_feature complement(3330652..3331410) /gene="vpsB" /locus_tag="SF3234" /note="lipid asymmetry maintenance ABC transporter permease subunit MlaE; Region: perm_MlaE_1; NF033619" /db_xref="CDD:411238" gene complement(3331436..3332245) /gene="vpsA" /locus_tag="SF3235" /db_xref="GeneID:1027119" CDS complement(3331436..3332245) /gene="vpsA" /locus_tag="SF3235" /note="Code: R; COG: COG1127" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_708994.1" /db_xref="GeneID:1027119" /translation="MEQSVANLVDMRDVSFTRGNRCIFDNISLTVPRGKITAIMGPSG IGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNV FDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIL ADKKIVAHGSAQALQTNPDPRVRQFLDGIADGPVPFRYPAGDYHADLLPGS" misc_feature complement(3331439..3332242) /gene="vpsA" /locus_tag="SF3235" /note="phospholipid ABC transporter ATP-binding protein MlaF; Region: PRK11831" /db_xref="CDD:236997" gene 3332455..3333420 /gene="yrbG" /locus_tag="SF3236" /db_xref="GeneID:1027075" CDS 3332455..3333420 /gene="yrbG" /locus_tag="SF3236" /note="Code: P; COG: COG0530" /codon_start=1 /transl_table=11 /product="calcium/sodium:proton antiporter" /protein_id="NP_708995.1" /db_xref="GeneID:1027075" /translation="MLLATALLIVGLLLVVYSADRLVFAASILCRTFGIPPLIIGMTV VSIGTSLPEIIVSLAASLHEQRDLAVGTALGSNIINILLILGLAALVRPFTVHSDVLR RELPLMLLVSVVAGSVLYDGQLSRSDGIFLLFLAVLWLLFIVKLARQGTDSLTREQLA ELPRDGGLPVAFLWLGIALIIMPVATRMVVDNATVLANYFAISELTMALTAIAIGTSL PELATAIAGVRKGENDIAVGNIIGANIFNIVIVLGLPALITPGEIDPLAYSRDYSVML LVSIIFALLCWRRSPQPGRGVGVLLTGGFIVWLAMLYWLSPILVE" misc_feature 3332455..3333417 /gene="yrbG" /locus_tag="SF3236" /note="putative calcium/sodium:proton antiporter; Provisional; Region: PRK10734" /db_xref="CDD:182684" gene 3333434..3334420 /gene="yrbH" /locus_tag="SF3237" /db_xref="GeneID:1027128" CDS 3333434..3334420 /gene="yrbH" /locus_tag="SF3237" /note="Code: M; COG: COG0794" /codon_start=1 /transl_table=11 /product="D-arabinose 5-phosphate isomerase" /protein_id="NP_708996.2" /db_xref="GeneID:1027128" /translation="MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEK MFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPSEAAHGDLGMVTPQDVVIA ISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAP TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPH VKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADV MTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV" misc_feature 3333440..3334417 /gene="yrbH" /locus_tag="SF3237" /note="arabinose-5-phosphate isomerase KdsD; Region: PRK10892" /db_xref="CDD:182814" gene 3334441..3335007 /gene="yrbI" /locus_tag="SF3238" /db_xref="GeneID:1027121" CDS 3334441..3335007 /gene="yrbI" /locus_tag="SF3238" /note="Code: R; COG: COG1778" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC" /protein_id="NP_708997.1" /db_xref="GeneID:1027121" /translation="MSKAGASLATCYGPVSADVMAKAENIRLLILDVDGVLSDGLIYM GNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKAKLVEDRCATLGITHLYQGQSNK LIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTRIA GGRGAVREVCDLLLLAQGKLDEAKGQSI" misc_feature 3334456..3335004 /gene="yrbI" /locus_tag="SF3238" /note="3-deoxy-manno-octulosonate-8-phosphatase KdsC; Region: PRK09484" /db_xref="CDD:181898" misc_feature order(3334534..3334548,3334666..3334671,3334744..3334746, 3334810..3334815,3334822..3334827) /gene="yrbI" /locus_tag="SF3238" /note="active site" /db_xref="CDD:319769" misc_feature order(3334540..3334542,3334555..3334578,3334582..3334584, 3334588..3334611,3334618..3334620,3334630..3334632, 3334672..3334674,3334681..3334686,3334693..3334698, 3334705..3334707,3334738..3334740,3334813..3334824, 3334828..3334833,3334870..3334872,3334882..3334884, 3334927..3334929,3334939..3334941,3334951..3334953) /gene="yrbI" /locus_tag="SF3238" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:319769" gene 3335004..3335579 /gene="yrbK" /locus_tag="SF3239" /db_xref="GeneID:1027116" CDS 3335004..3335579 /gene="yrbK" /locus_tag="SF3239" /note="Code: S; COG: COG3117" /codon_start=1 /transl_table=11 /product="lipopolysaccharide exporter periplasmic protein LptC" /protein_id="NP_708998.1" /db_xref="GeneID:1027116" /translation="MSKARRWVIIVLSLAVLVMIGINMAEKDDTAQVVVNNNDPTYKS EHTDTLVYNPEGALSYRLIAQHVEYYSDQAVSWFTQPVLTTFDKDKIPTWSVKADKAK LTNDRMLYLYGHVEVNALVPDSQLRRITTDNAQINLVTQDVTSEDLVTLYGTTFNSSG LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP" misc_feature 3335004..3335576 /gene="yrbK" /locus_tag="SF3239" /note="LPS export ABC transporter periplasmic protein LptC; Region: PRK10893" /db_xref="CDD:236788" gene 3335548..3336105 /gene="yhbN" /locus_tag="SF3240" /db_xref="GeneID:1027131" CDS 3335548..3336105 /gene="yhbN" /locus_tag="SF3240" /note="Code: S; COG: COG1934" /codon_start=1 /transl_table=11 /product="lipopolysaccharide transport periplasmic protein LptA" /protein_id="NP_708999.2" /db_xref="GeneID:1027131" /translation="MKFKTNKLSLNLVLASSLLAASIPAFAVTGDTDQPIHIESDQQS LDMQGNVVTFTGNVIVTQGTIKINADKVVVTRPGGEQGKEVIDGYGKPATFYQMQDNG KPVEGHASQMHYELAKDFVVLTGNAYLQQVDSNIKGDKITYLVKEQKMQAFSDKGKRV TTVLVPSQLQDKNNKGQTPAQKKGN" misc_feature 3335560..3336102 /gene="yhbN" /locus_tag="SF3240" /note="lipopolysaccharide ABC transporter substrate-binding protein LptA; Region: PRK10894" /db_xref="CDD:182816" gene 3336112..3336837 /gene="yhbG" /locus_tag="SF3241" /db_xref="GeneID:1027080" CDS 3336112..3336837 /gene="yhbG" /locus_tag="SF3241" /note="Code: R; COG: COG1137" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_709000.1" /db_xref="GeneID:1027080" /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT TFYMVVGIVPRDAGNIIIDDDDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV LQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFIL LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH GTPTEILQDEHVKRVYLGEDFRL" misc_feature 3336112..3336834 /gene="yhbG" /locus_tag="SF3241" /note="lipopolysaccharide ABC transporter ATP-binding protein; Provisional; Region: PRK10895" /db_xref="CDD:182817" gene 3336885..3338318 /gene="rpoN" /locus_tag="SF3242" /db_xref="GeneID:1027124" CDS 3336885..3338318 /gene="rpoN" /locus_tag="SF3242" /note="Code: K; COG: COG1508" /codon_start=1 /transl_table=11 /product="RNA polymerase factor sigma-54" /protein_id="NP_709001.1" /db_xref="GeneID:1027124" /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESN PLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPEELPLDASWDTIYTAGTPSGTSG DYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDETGYLTVPLED ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARL IISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV LVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLIKSLE SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG IMVARRTVAKYRESLSIPPSNQRKQLV" misc_feature 3336885..3338312 /gene="rpoN" /locus_tag="SF3242" /note="RNA polymerase factor sigma-54; Reviewed; Region: PRK05932" /db_xref="CDD:235648" gene 3338341..3338628 /gene="yhbH" /locus_tag="SF3243" /db_xref="GeneID:1027091" CDS 3338341..3338628 /gene="yhbH" /locus_tag="SF3243" /note="Code: J; COG: COG1544" /codon_start=1 /transl_table=11 /product="ribosome hibernation promoting factor HPF" /protein_id="NP_709002.1" /db_xref="GeneID:1027091" /translation="MQLNITGNNVEITEALREFVTAKFAKLEQYFDRINQVYVVLKVE KVTHTSDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTKHKDKLKQH" misc_feature 3338341..3338625 /gene="yhbH" /locus_tag="SF3243" /note="ribosome hibernation promoting factor; Region: PRK10470" /db_xref="CDD:182484" misc_feature order(3338350..3338352,3338356..3338358,3338362..3338364, 3338416..3338418,3338425..3338427,3338443..3338448, 3338458..3338460,3338470..3338472,3338497..3338499, 3338506..3338517,3338524..3338526,3338530..3338532, 3338539..3338541,3338545..3338547,3338554..3338556, 3338596..3338601,3338611..3338613) /gene="yhbH" /locus_tag="SF3243" /note="30S subunit binding site [active]" /db_xref="CDD:238308" gene 3338746..3339237 /gene="ptsN" /locus_tag="SF3244" /db_xref="GeneID:1027089" CDS 3338746..3339237 /gene="ptsN" /locus_tag="SF3244" /note="Code: GT; COG: COG1762" /codon_start=1 /transl_table=11 /product="PTS system sugar transporter subunit IIA" /protein_id="NP_709003.2" /db_xref="GeneID:1027089" /translation="MTNNDTTLQLSSVLNRECTRSRVHCQSKKRALEIISELAAKQLS LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAAQSDEELYQIITDTEGTP DEA" misc_feature 3338749..3339210 /gene="ptsN" /locus_tag="SF3244" /note="PTS IIA-like nitrogen regulatory protein PtsN; Region: PRK10896" /db_xref="CDD:182818" misc_feature order(3338914..3338916,3338962..3338964) /gene="ptsN" /locus_tag="SF3244" /note="active site" /db_xref="CDD:238129" misc_feature 3338962..3338964 /gene="ptsN" /locus_tag="SF3244" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238129" gene 3339283..3340137 /gene="yhbJ" /locus_tag="SF3245" /db_xref="GeneID:1027086" CDS 3339283..3340137 /gene="yhbJ" /locus_tag="SF3245" /note="Code: R; COG: COG1660" /codon_start=1 /transl_table=11 /product="glmZ(sRNA)-inactivating NTPase" /protein_id="NP_709004.1" /db_xref="GeneID:1027086" /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTL ADREISAAVSIDVRNMPESPEIFEQAMSNLPDAFSPQLLFLDADRNTLIRRYSDTRRL HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH RTLEKRKP" misc_feature 3339283..3340128 /gene="yhbJ" /locus_tag="SF3245" /note="P-loop ATPase protein family; Region: ATP_bind_2; pfam03668" /db_xref="CDD:397641" gene 3340134..3340406 /gene="ptsO" /locus_tag="SF3246" /db_xref="GeneID:1023507" CDS 3340134..3340406 /gene="ptsO" /locus_tag="SF3246" /note="Code: G; COG: COG1925" /codon_start=1 /transl_table=11 /product="N-regulated PTS system (Npr) phosphohistidinoprotein-hexose phosphotransferase" /protein_id="NP_709005.1" /db_xref="GeneID:1023507" /translation="MTVKQTVEITNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA EANSVIALLMLDSAKGRQIEVEATGPQEEEALAAVIALFNSGFDED" misc_feature 3340134..3340403 /gene="ptsO" /locus_tag="SF3246" /note="PTS phosphocarrier protein NPr; Region: PRK10897" /db_xref="CDD:182819" misc_feature 3340149..3340160 /gene="ptsO" /locus_tag="SF3246" /note="dimerization domain swap beta strand [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature order(3340176..3340178,3340182..3340187,3340191..3340196, 3340206..3340208,3340215..3340217,3340272..3340283, 3340290..3340295) /gene="ptsO" /locus_tag="SF3246" /note="regulatory protein interface [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature 3340179..3340181 /gene="ptsO" /locus_tag="SF3246" /note="active site" /db_xref="CDD:238217" misc_feature 3340275..3340277 /gene="ptsO" /locus_tag="SF3246" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:238217" gene 3340619..3341251 /gene="yrbL" /locus_tag="SF3247" /db_xref="GeneID:1027097" CDS 3340619..3341251 /gene="yrbL" /locus_tag="SF3247" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709006.2" /db_xref="GeneID:1027097" /translation="MIRLSEQSPLGTGRHRKCYAHPEDAQRCIKIVYHRGDGGDKEIR RELKYYAHLGRRLKDWSGIPRYHGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQCR YEEDIAQLRQLLKQLKRYLQDNRIVTMSLKPQNILCHRISESEVIPVVCDNIGESTLI PLATWSKWCCLRKQERLWKRFIAQPALAIALQKDLQPRESKTLALTSREA" misc_feature 3340619..3341248 /gene="yrbL" /locus_tag="SF3247" /note="PhoP regulatory network protein YrbL; Region: PRK10345" /db_xref="CDD:182395" misc_feature order(3340646..3340657,3340700..3340702,3340706..3340708, 3340808..3340810,3340868..3340876,3340883..3340885, 3341006..3341008,3341018..3341023,3341027..3341029, 3341069..3341074) /gene="yrbL" /locus_tag="SF3247" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270622" gene complement(3341248..3341975) /gene="mtgA" /locus_tag="SF3248" /pseudo /db_xref="GeneID:1027093" misc_feature complement(3341248..3341975) /gene="mtgA" /locus_tag="SF3248" /note="Similar to Escherichia coli K12 peptidoglycan enzyme gi: 1789601 (243 aa). BLAST with identity of 99% in 242 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(3341972..3342625) /gene="yhbL" /locus_tag="SF3249" /db_xref="GeneID:1027090" CDS complement(3341972..3342625) /gene="yhbL" /locus_tag="SF3249" /note="Code: S; COG: COG3155" /codon_start=1 /transl_table=11 /product="isoprenoid biosynthesis protein with amidotransferase-like domain" /protein_id="NP_709007.2" /db_xref="GeneID:1027090" /translation="MKKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDKQ QVDVINHLTGEAMTETRNVLIEAARITRGEIRPLAQADAAELDALIVPGGFGAAKNLS NFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFPLRLTIGTDIDTA EVLEEMGAEHVPCPVDDIVVDEDNKIVTTPAYMLAQNIAEAASGIDKLVSRVLVLAE" misc_feature complement(3341975..3342625) /gene="yhbL" /locus_tag="SF3249" /note="isoprenoid biosynthesis glyoxalase ElbB; Region: PRK11780" /db_xref="CDD:236980" misc_feature complement(3342221..3342223) /gene="yhbL" /locus_tag="SF3249" /note="conserved cys residue [active]" /db_xref="CDD:153227" gene complement(3342855..3345191) /gene="arcB" /locus_tag="SF3250" /db_xref="GeneID:1027096" CDS complement(3342855..3345191) /gene="arcB" /locus_tag="SF3250" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="aerobic respiration control sensor protein ArcB" /protein_id="NP_709008.1" /db_xref="GeneID:1027096" /translation="MKQIRLLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL SLNVQLKDNIAQLNQEIAVREKAEAELQETFGQLKIEIKEREETQIQLEQQSSFLRSF LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPADVYSPEAAAKVIETDEK VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTELTAEQEKYLKTIHVSAVTLGNI FNDIIDMDKMERRKVQLDNQPVDFTSFLADLENLSALQAQQKGLRFNLEPTLPLPHQV ITDGTRLRQILWNLISNAVKFTQQGQVTVRVRYDEGDMLHFEVEDSGIGIPQDELDKI FAMYYQVKDSHGGKPATGTGIGLAVSRRLAKNMGGDITVTSEQGKGSTFTLTIHAPSV AEEVDDAFDEDDMPLPALNVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFK PGEYDLVLLDIQLPDMTGLDISRELTKRYPREDLPPLVALTANVLKDKQEYLNAGMDD VLSKPLSVPALTAMIKKFWDTQDDEESTVTTEENSKSEALLDIPMLEQYLELVGPKLI TDGLAVFEKMMPGYVSVLESNLTAQDKKGIVEEGHKIKGAAGSVGLRHLQQLGQQIQS PDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAKATKK" misc_feature complement(3342858..3345191) /gene="arcB" /locus_tag="SF3250" /note="aerobic respiration control sensor protein ArcB; Provisional; Region: PRK11091" /db_xref="CDD:236842" gene complement(3345287..3346216) /gene="yhcC" /locus_tag="SF3251" /db_xref="GeneID:1027084" CDS complement(3345287..3346216) /gene="yhcC" /locus_tag="SF3251" /note="Code: R; COG: COG1242" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709009.2" /db_xref="GeneID:1027084" /translation="MQLQKLVNMFGGDLTRRYGQKVHKLTLHGGFSCPNRDGTIGRGG CTFCNVASFADEAQQHRSIAEQLAHQANLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ QAVSQANIVGLCVGTRPDCVPDAVLDLLCEYKDQGYEVWLELGLQTAHDKTLHRINRG HDFACYQRTTQLARQRGLKVCSHLIVGLPGEGQAECLQTLERVVETSVDGIKLHPLHI VKGSIMAKAWEAGRLNGIELEDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC ENRWTGMVELDRYLNEHGVQGSALGRPWLPPTE" misc_feature complement(3345311..3346201) /gene="yhcC" /locus_tag="SF3251" /note="radical SAM protein, TIGR01212 family; Region: TIGR01212" /db_xref="CDD:130279" gene 3346783..3351351 /gene="gltB" /locus_tag="SF3252" /db_xref="GeneID:1025892" CDS 3346783..3351351 /gene="gltB" /locus_tag="SF3252" /codon_start=1 /transl_table=11 /product="glutamate synthase" /protein_id="NP_709010.3" /db_xref="GeneID:1025892" /translation="MRGARMTRKPRRHALSVPVRSGSEVGFPQSLGEVHDMLYDKSLE RDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGAILADGKTGDGCGLLLQKPDRFF RIVAQERGWRLAKNYAVGMLFLNKDPELAAAARRIVEEELQRETLSIVGWRDVPTNEG VLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIARRRIEKRLEANKDFYVCSLSNL VNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRFSTNTVPRWPLAQPFRYLAHNGE INTITGNRQWARARTYKFQTPLIPDLHDAAPFVNETGSDSSSMDNMLELLLAGGMDII RAMRLLVPPAWQNNPDMDPELRAFFDFNSMHMEPWDGPAGIVMSDGRFAACNLDRNGL RPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVGPGELMVIDTRSGRILHSAETDD DLKSRHPYKEWMEKNVRRLVPFEDLPDEEVGSRELDDDTLASYQKQFNYSAEELDSVI RVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQQFAQVTNPPIDPLREAHVMSLA TSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLTTMKEEHYRADTLDITFDVTKTT LEATVKELCDKAEKMVRSGTVLLVLSDRNIAKDRLPVPAPMAVGAIQTRLVDQSLRCD ANIIVETASARDPHHFAVLLGFGATAIYPYLAYETLGRLVDTHAIAKDYRTVMLNYRN GINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDVVGLCFQGAVSRIGGASFEDFQQ DLLNLSKRAWLARKPISQGGLLKYVHGGEYHAYNPDVVRTLQQAVQSGEYSDYQEYAK LVNERPATTLRDLLAITPGENAVNIADVEPASELFKRFDTAAMSIGALSPEAHEALAE AMNSIGGNSNSGEGGEDPARYGTNKVSRIKQVASGRFGVTPAYLVNADVIQIKVAQGA KPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKA MISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGTGASPLSSVKYAGCPWELGLVET QQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAESFGFGTGPMVALGCKYLRICHL NNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARETRELMAQLGVTRLVDLIGRTDL LKELDGFTAKQQKLALSKLLETAEPHAGKSLYCTENNPPFDNGLLNAQLLQQAKPFVD ERQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLAADPIKAYFNGTAGQSFGVWNAG GVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFRSHEASIIGNTCLYGATGGRLYAAG RAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCILGKTGVNFGAGMTGGFAYVLDES GDFRKRVNPELVEVLSVDDLAIHEEHLRGLITEHVQHTGSQRGEEILANWSTFATKFA LVKPKSSDVKALLGHRSRSAAELRVQAQ" misc_feature 3346885..3351333 /gene="gltB" /locus_tag="SF3252" /note="glutamate synthase subunit alpha; Provisional; Region: gltB; PRK11750" /db_xref="CDD:236968" gene 3351364..3352782 /gene="gltD" /locus_tag="SF3253" /db_xref="GeneID:1027115" CDS 3351364..3352782 /gene="gltD" /locus_tag="SF3253" /note="Code: ER; COG: COG0493" /codon_start=1 /transl_table=11 /product="glutamate synthase" /protein_id="NP_709011.1" /db_xref="GeneID:1027115" /translation="MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQA DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR LCEGSCTLNDEFGAVTIGNIERYINDKAFEMGWRPDMSGVKQTGKKVAIIGAGPAGLA CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE VGRDVQLDDLLSDYDAVFLGVGTYQSMRGGLENEDADGVYAALPFLIANTKQLMGFGE TRDEPFVSMEGKRVVVLGGGDTAMDCVRTSVRQGAKHVTCAYRRDEENMPGSRREVKN AREEGVEFKFNVQPLGIEVNGNGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHIVPA DAVIMAFGFRPHNMEWLAKHSVELDSQGRIIAPEGNDNAFQTSNPKIFAGGDIVRGSD LVVTAIAEGRKAADGIMNWLEV" misc_feature 3351379..3352779 /gene="gltD" /locus_tag="SF3253" /note="glutamate synthase small subunit family protein, proteobacterial; Region: gltD_gamma_fam; TIGR01318" /db_xref="CDD:273553" gene 3352966..3353371 /gene="yhcG" /locus_tag="SF3254" /pseudo /db_xref="GeneID:1027099" misc_feature 3352966..3353371 /gene="yhcG" /locus_tag="SF3254" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789614 (376 aa). BLAST with identity of 92% in 135 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element 3353455..3354718 /mobile_element_type="insertion sequence:IS600" gene 3353519..3353821 /locus_tag="SF3255" /db_xref="GeneID:1025136" CDS 3353519..3353821 /locus_tag="SF3255" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_709012.1" /db_xref="GeneID:1025136" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEDASRLFLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 3353519..3353791 /locus_tag="SF3255" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 3353857..3354675 /locus_tag="SF3256" /db_xref="GeneID:1027105" CDS 3353857..3354675 /locus_tag="SF3256" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_709013.1" /db_xref="GeneID:1027105" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLACLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHFRLGNISPAAFREKYHQMAA" misc_feature <3353857..3354648 /locus_tag="SF3256" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 3354728..3355033 /locus_tag="SF3256a" /db_xref="GeneID:16608361" CDS 3354728..3355033 /locus_tag="SF3256a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439286.1" /db_xref="GeneID:16608361" /translation="MIYIEQLELIHKSGDVLYPVKITRKSSGKTAFHLVPFGLNKTHD LLEVEDASEAIRLVIDERHSIRCSTLTATITNKKGKRIKRTGIYSIKGVNIKEYNVR" gene complement(3355109..3355573) /gene="yhcH" /locus_tag="SF3257" /db_xref="GeneID:1025128" CDS complement(3355109..3355573) /gene="yhcH" /locus_tag="SF3257" /note="Code: S; COG: COG2731" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709014.1" /db_xref="GeneID:1025128" /translation="MMMGEVQSLPSAGLHPALQDALTLALAARPQEKAPGRYELQGDN IFMNVMTFNTQSPVEKKAELHEQYIDIQLLLNGEERILFGMAGTARQCEEFHHEDDYQ LCSAIENEQTIILKPGMFAVFMPGEPHKPGCVVGEPGEIKKVVVKVKADLMA" misc_feature complement(3355151..3355573) /gene="yhcH" /locus_tag="SF3257" /note="N-acetylneuraminate anomerase; Region: acetylneur_anom; NF040884" /db_xref="CDD:468820" gene complement(3355570..3356478) /gene="yhcI" /locus_tag="SF3258" /db_xref="GeneID:1026854" CDS complement(3355570..3356478) /gene="yhcI" /locus_tag="SF3258" /note="Code: K; COG: COG1940" /codon_start=1 /transl_table=11 /product="NagC-like transcriptional regulator" /protein_id="NP_709015.4" /db_xref="GeneID:1026854" /translation="MVQHSDEKGGAMTILAIDIGGTKLAAALIGADGQIRDRRELPTP ASQTPEALRDALSALVSPLQAHAQRVAIASTGIIRDGSLLALNPHNLGGLLHFPLVKT LEQLTNLPTIAINDAQAAAWAEYQALEGDITDMVFITVSTGVGGGVVSGGKLLTGPGG LAGHIGHTLADPHGPVCGCGRTGCVEAIASGRGIAAAAQGELAGADARTIFTRAGQGD EQAQQLIHRSARTLARLIADIKATTDCQCVVVGGSVGLAEGYLALVEMYLAQEPAAFH VDLLAAHYRHDAGLLGAALLAQGEKL" misc_feature complement(3355618..3356445) /gene="yhcI" /locus_tag="SF3258" /note="N-acetylmannosamine kinase; Provisional; Region: PRK05082" /db_xref="CDD:235338" gene complement(3356442..3357131) /gene="yhcJ" /locus_tag="SF3259" /db_xref="GeneID:1027094" CDS complement(3356442..3357131) /gene="yhcJ" /locus_tag="SF3259" /note="Code: G; COG: COG3010" /codon_start=1 /transl_table=11 /product="N-acetylmannosamine-6-phosphate 2-epimerase" /protein_id="NP_709016.2" /db_xref="GeneID:1027094" /translation="MSLLAQLDQKIAANGGLIVSCQPVPDSPLDKPEIVAAMALAAEQ AGAVAIRIEGVANLQATRAVVSVPIIGIVKRDLEDSPVRITAYIEDVDALAQAGADII AIDGTDRPRPVPVETLLARIHHHGLLAMTDCSTPEDGLACQKLGAEIIGTTLSGYTTP ETPEEPDLALVKTLSEAGCRVIAEGRYNTPAQAADAMRHGAWAVTVGSAITRLEHICQ WYNTAMKKAVL" misc_feature complement(3356454..3357101) /gene="yhcJ" /locus_tag="SF3259" /note="putative N-acetylmannosamine-6-phosphate 2-epimerase; Region: PRK01130" /db_xref="CDD:234907" misc_feature complement(order(3356511..3356513,3356574..3356582, 3356661..3356663,3356673..3356675,3356736..3356738, 3356817..3356819,3356910..3356912,3356916..3356918, 3356979..3356981,3357066..3357068,3357072..3357074)) /gene="yhcJ" /locus_tag="SF3259" /note="putative active site cavity [active]" /db_xref="CDD:240080" gene complement(3357179..3358699) /gene="nanT" /locus_tag="SF3260" /db_xref="GeneID:1027083" CDS complement(3357179..3358699) /gene="nanT" /locus_tag="SF3260" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="sialic acid transporter" /protein_id="NP_709017.3" /db_xref="GeneID:1027083" /translation="MGIAHRGRLTMSTTTQNIPWYRHLNRAQWRAFSAAWLGYLLDGF DFVLIALVLTEVQGEFGLTTVQAASLISAAFISRWFGGLMLGAMGDRYGRRLAMVTSI VLFSAGTLACGFAPGYITMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLI SGFSVGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKA PVRTMVDILYRGEHRIANIVMTLAAATALWFCFAGNLQNAAIVAVLGLLCAAIFISFM VQSTGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLAYNPHTVANVLFFSGFGA AVGCCVGGFLGDWLGTRKAYVCSLLASQLLIIPVFAIGGANVWVLGLLLFFQQMLGQG IAGILPKLIGGYFDTDQRAAGLGFTYNVGALGGALAPIIGALIAQRLDLGTALASLSF SLTFVVILLIGLDMPSRVQRWLRPEALRTHDAIDGKPFSGAVPFGSAKNDLVKTKS" misc_feature complement(3357182..3358669) /gene="nanT" /locus_tag="SF3260" /note="putative sialic acid transporter; Provisional; Region: PRK03893" /db_xref="CDD:179668" gene complement(3358779..3359672) /gene="nanA" /locus_tag="SF3261" /db_xref="GeneID:1027061" CDS complement(3358779..3359672) /gene="nanA" /locus_tag="SF3261" /note="Code: EM; COG: COG0329" /codon_start=1 /transl_table=11 /product="N-acetylneuraminate lyase" /protein_id="NP_709018.1" /db_xref="GeneID:1027061" /translation="MATNLRGVMAALLTPFDQQQALDKASLRRLVQFNIQQGIDGLYV GGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFDA VSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG VGALKQTSGDLYQMEQIRREHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ GIVKALKEGDIQTAQKLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFGP VDEKYLPELKALAQQLMQERG" misc_feature complement(3358782..3359660) /gene="nanA" /locus_tag="SF3261" /note="N-acetylneuraminate lyase; Region: nanA; TIGR00683" /db_xref="CDD:273217" misc_feature complement(order(3359178..3359180,3359262..3359264, 3359529..3359537,3359544..3359546,3359640..3359642)) /gene="nanA" /locus_tag="SF3261" /note="inhibitor site; inhibition site" /db_xref="CDD:188641" misc_feature complement(order(3359055..3359057,3359178..3359180, 3359262..3359264,3359529..3359537,3359544..3359546)) /gene="nanA" /locus_tag="SF3261" /note="active site" /db_xref="CDD:188641" misc_feature complement(order(3358854..3358859,3359310..3359312, 3359322..3359324,3359343..3359348,3359418..3359423, 3359514..3359519,3359532..3359534)) /gene="nanA" /locus_tag="SF3261" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188641" misc_feature complement(3359178..3359180) /gene="nanA" /locus_tag="SF3261" /note="catalytic residue [active]" /db_xref="CDD:188641" gene complement(3359794..3360576) /gene="yhcK" /locus_tag="SF3262" /db_xref="GeneID:1027098" CDS complement(3359794..3360576) /gene="yhcK" /locus_tag="SF3262" /note="Code: K; COG: COG2186" /codon_start=1 /transl_table=11 /product="transcriptional regulator NanR" /protein_id="NP_709019.2" /db_xref="GeneID:1027098" /translation="MNAFDSQTEDSSPAIGRNLRSRPLARKKLSEMVEEELEQMIRRR EFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADTIIG ELSGMAKDFLSHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIDLLAKALEINSQSLD NNAAFIRSDVDFHRVLAEIPGNPIFMAIHVALLDWLIAARPTVTDQALHEHNNVSYQQ HIAIVDAIRRHDPDEADRALQSHLNSVSATWHAFGQTTNKKK" misc_feature complement(3359806..3360531) /gene="yhcK" /locus_tag="SF3262" /note="transcriptional regulator NanR; Provisional; Region: PRK03837" /db_xref="CDD:235166" mobile_element 3360968..3361735 /mobile_element_type="insertion sequence:IS1" gene 3361023..3361298 /gene="insA" /locus_tag="SF3263" /db_xref="GeneID:1027060" CDS 3361023..3361298 /gene="insA" /locus_tag="SF3263" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709020.1" /db_xref="GeneID:1027060" /translation="MAFISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSARSR" misc_feature 3361044..>3361295 /gene="insA" /locus_tag="SF3263" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3361325..3361720 /gene="insB" /locus_tag="SF3264" /db_xref="GeneID:1027087" CDS 3361325..3361720 /gene="insB" /locus_tag="SF3264" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709021.1" /db_xref="GeneID:1027087" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 3361328..3361717 /gene="insB" /locus_tag="SF3264" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3361714..3362142) /locus_tag="SF3265" /db_xref="GeneID:1027051" CDS complement(3361714..3362142) /locus_tag="SF3265" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709022.1" /db_xref="GeneID:1027051" /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL KSPSYTKSISWQHYLRLIPYNWTITLEVNYTFYEISGINYSHGKYIMYKSLFTIIILL YSASSYAKSESPPASTITFIAQIDHVELNKTALSVMTPTY" mobile_element 3361968..3362735 /mobile_element_type="insertion sequence:IS1" gene 3362217..3362720 /gene="insB" /locus_tag="SF3266" /db_xref="GeneID:1027100" CDS 3362217..3362720 /gene="insB" /locus_tag="SF3266" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709023.1" /db_xref="GeneID:1027100" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 3362325..3362717 /gene="insB" /locus_tag="SF3266" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3362741..3364108 /gene="yhcL" /locus_tag="SF3267" /db_xref="GeneID:1027101" CDS 3362741..3364108 /gene="yhcL" /locus_tag="SF3267" /note="Code: C; COG: COG3069" /codon_start=1 /transl_table=11 /product="cryptic C4-dicarboxylate transporter DcuD" /protein_id="NP_709024.1" /db_xref="GeneID:1027101" /translation="MFGIIISVIVLITMGYLILKNYKPQVVLAAAGVFLMMCGVWLGF GGVLDPAKSSGYLIVDIYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASCAMVSL LSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAV AVIATTMSIEWGILETNSIFAAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRA FDKKDKNINHEQAEQKTLDNVPPLYYAILPVMPLILMLGSLFLAHVGLMKSELHLVVV MLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFVNVVTLVVAGEIFAKGLTTIG TVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVP AVVMIMPMHFATTLARAVSPITAVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIAT ITLFY" misc_feature 3362741..3364105 /gene="yhcL" /locus_tag="SF3267" /note="C4-dicarboxylate transporter DcuC; Region: PRK09804" /db_xref="CDD:182087" gene complement(3364151..3364648) /gene="sspB" /locus_tag="SF3268" /db_xref="GeneID:1027107" CDS complement(3364151..3364648) /gene="sspB" /locus_tag="SF3268" /note="Code: R; COG: COG2969" /codon_start=1 /transl_table=11 /product="ClpXP protease specificity-enhancing factor" /protein_id="NP_709025.1" /db_xref="GeneID:1027107" /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPLLVVDVTLPGVQVPME YARDGQIVLNIAPRAVGNLELANDEVRFNARFGGIPRQVSVPLAAVLAIYARENGAGT MFEPEAAYDEDTSIMNDEEASADNETVMSVIDGDKPDHDDDTHPDDEPPQPPRGGRPA LRVVK" misc_feature complement(3364271..3364639) /gene="sspB" /locus_tag="SF3268" /note="ClpXP protease specificity-enhancing factor; Provisional; Region: PRK11798" /db_xref="CDD:236987" gene complement(3364654..3365292) /gene="sspA" /locus_tag="SF3269" /db_xref="GeneID:1026855" CDS complement(3364654..3365292) /gene="sspA" /locus_tag="SF3269" /note="Code: O; COG: COG0625" /codon_start=1 /transl_table=11 /product="stringent starvation protein A" /protein_id="NP_709026.1" /db_xref="GeneID:1026855" /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY MHRIEKDWYTLMNTIINGSASEADAARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY LAPLLWRLPQLGIEFSGPGAKELKGYMTRVFERDSFLASLTEAEREMRLGRS" misc_feature complement(3364660..3365292) /gene="sspA" /locus_tag="SF3269" /note="stringent starvation protein A; Provisional; Region: sspA; PRK09481" /db_xref="CDD:236537" gene complement(3365687..3366079) /gene="rpsI" /locus_tag="SF3270" /db_xref="GeneID:1027073" CDS complement(3365687..3366079) /gene="rpsI" /locus_tag="SF3270" /note="Code: J; COG: COG0103" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S9" /protein_id="NP_709027.1" /db_xref="GeneID:1027073" /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA RMVVRQPMELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRSELRKAG FVTRDARQVERKKVGLRKARRRPQFSKR" misc_feature complement(3365690..3366079) /gene="rpsI" /locus_tag="SF3270" /note="30S ribosomal protein S9; Reviewed; Region: rpsI; PRK00132" /db_xref="CDD:178888" gene complement(3366095..3366523) /gene="rplM" /locus_tag="SF3271" /db_xref="GeneID:1027104" CDS complement(3366095..3366523) /gene="rplM" /locus_tag="SF3271" /note="Code: J; COG: COG0102" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L13" /protein_id="NP_709028.2" /db_xref="GeneID:1027104" /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY TPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI" misc_feature complement(3366098..3366511) /gene="rplM" /locus_tag="SF3271" /note="Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]; Region: RplM; COG0102" /db_xref="CDD:439872" gene complement(3366742..3367869) /gene="yhcM" /locus_tag="SF3272" /db_xref="GeneID:1027102" CDS complement(3366742..3367869) /gene="yhcM" /locus_tag="SF3272" /note="Code: R; COG: COG1485" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709029.1" /db_xref="GeneID:1027102" /translation="MQSVTPTSQYLKALNEGSHQPDDVQKEAVSRLEIIYQELINSRP PAPRTSGLMARVGKLWGKREDTKHTPVRGLYMWGGVGRGKTWLMDLFYQSLPGERKQR LHFHRFMLRVHEELTALQGQTDPLEIIADRFKAETDVLCFDEFFVSDITDAMLLGGLM KALFTRGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDVMNVDAGVDYRLRTL TQAHLWLSPLNDETRAQMDKLWLALAGVKRENSPTLEINHRPLATMGVENQTLAVSFT TLCVDARSQHDYIALSRLFHTVMLFDVPVMTRLMESEARRFIALVDEFYERHVKLVVS AEVPLYEIYQGERLKFEFQRCLSRLQEMQSEEYLKREHLAG" misc_feature complement(3366748..3367866) /gene="yhcM" /locus_tag="SF3272" /note="Cell division protein ZapE (Z ring-associated ATPase), AFG1 superfamily [Cell cycle control, cell division, chromosome partitioning]; Region: ZapE; COG1485" /db_xref="CDD:441094" gene 3368063..3368461 /gene="yhcB" /locus_tag="SF3273" /db_xref="GeneID:1027071" CDS 3368063..3368461 /gene="yhcB" /locus_tag="SF3273" /note="Code: S; COG: COG3105" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709030.2" /db_xref="GeneID:1027071" /translation="MTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNKAE LDEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPELSAEANPFRNRLAES EASNDQAPVQVPRDYSEGASGLLRTGAKRD" misc_feature 3368063..3368458 /gene="yhcB" /locus_tag="SF3273" /note="DUF1043 family protein; Region: PRK11677" /db_xref="CDD:236953" gene 3368615..3369772 /locus_tag="SF3274" /pseudogene="unknown" /db_xref="GeneID:1027103" gene 3370052..3371119 /gene="degS" /locus_tag="SF3275" /db_xref="GeneID:1027067" CDS 3370052..3371119 /gene="degS" /locus_tag="SF3275" /note="Code: O; COG: COG0265" /codon_start=1 /transl_table=11 /product="serine endoprotease" /protein_id="NP_709032.1" /db_xref="GeneID:1027067" /translation="MFVKLLRSVAIGLIVGAILLVAMPSLRSLNPLSTPQFDSTDETP ASYNLAVRRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLAIGN PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL SFDKSNDGETPEGIGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQSGGI DQLQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVV VMRDDKQLTLQVTIQEYPATN" misc_feature 3370052..3371113 /gene="degS" /locus_tag="SF3275" /note="serine endoprotease DegS; Region: PRK10898" /db_xref="CDD:182820" gene complement(3371181..3372119) /gene="mdh" /locus_tag="SF3276" /db_xref="GeneID:1025382" CDS complement(3371181..3372119) /gene="mdh" /locus_tag="SF3276" /note="Code: C; COG: COG0039" /codon_start=1 /transl_table=11 /product="malate dehydrogenase" /protein_id="NP_709033.2" /db_xref="GeneID:1025382" /translation="MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAV DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV QQVAKNCPKACIGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE LKGKQPGEVEVPVIGGHSGVTILPLLSQVPGVSFTEQEVADLTKRIQNAGTEVVEAKA GGGSATLSMGQAAARFGLSLVRALQGEQGVVECAYVEGDGQYARFFSQPLLLGKNGVE ERKSIGTLSAFEQNALEGMLDTLKKDIALGKEFVNK" misc_feature complement(3371190..3372119) /gene="mdh" /locus_tag="SF3276" /note="Glyoxysomal and mitochondrial malate dehydrogenases; Region: MDH_glyoxysomal_mitochondrial; cd01337" /db_xref="CDD:133422" misc_feature complement(order(3371439..3371441,3371451..3371453, 3371589..3371591,3371673..3371675,3371682..3371684, 3371763..3371765,3371769..3371771,3371829..3371831, 3371838..3371840,3371850..3371852,3371883..3371888, 3371892..3371894,3372018..3372020,3372084..3372095)) /gene="mdh" /locus_tag="SF3276" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:133422" misc_feature complement(order(3371433..3371435,3371442..3371453, 3371469..3371474,3371484..3371486,3371493..3371495, 3371652..3371654,3371661..3371666,3371973..3371981, 3371985..3371990,3372078..3372080)) /gene="mdh" /locus_tag="SF3276" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:133422" misc_feature complement(order(3371490..3371492,3371589..3371591, 3371661..3371663,3371763..3371765,3371859..3371861, 3371877..3371879)) /gene="mdh" /locus_tag="SF3276" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:133422" gene 3372554..3373024 /gene="argR" /locus_tag="SF3277" /db_xref="GeneID:1027085" CDS 3372554..3373024 /gene="argR" /locus_tag="SF3277" /note="Code: E; COG: COG1438" /codon_start=1 /transl_table=11 /product="arginine repressor ArgR" /protein_id="NP_709034.1" /db_xref="GeneID:1027085" /translation="MRSSAKQEELVKAFKALLKEEKFSSQGEIVAALQEQGFDNINQS KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPANGFTVKDLYEAILELFDQEL" misc_feature 3372554..3373021 /gene="argR" /locus_tag="SF3277" /note="transcriptional regulator ArgR; Region: PRK05066" /db_xref="CDD:179922" gene 3373338..3373652 /gene="yhcN" /locus_tag="SF3278" /db_xref="GeneID:1027063" CDS 3373338..3373652 /gene="yhcN" /locus_tag="SF3278" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709035.1" /db_xref="GeneID:1027063" /translation="MGHETKAQLKDYVEVKIMKIKTTVAALSVLSVLSFGAFAADSID AAQAQNREAIGTVSVSGVASSPMDIREMLNKKAEEKGATAYQITEARSGDTWHATAEL YK" misc_feature 3373389..3373649 /gene="yhcN" /locus_tag="SF3278" /note="peroxide/acid stress response protein YhcN; Region: stress_YhcN; NF033776" /db_xref="CDD:411360" gene complement(3373708..3373980) /gene="yhcO" /locus_tag="SF3279" /db_xref="GeneID:1027064" CDS complement(3373708..3373980) /gene="yhcO" /locus_tag="SF3279" /note="Code: K; COG: COG2732" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709036.1" /db_xref="GeneID:1027064" /translation="MNIYAFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMN DVLPLPLEIEFVHLGEKTRRRFGALILLFDEAEEELEGHLRFNVRH" misc_feature complement(3373717..3373974) /gene="yhcO" /locus_tag="SF3279" /note="Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell; Region: Barstar; cd05142" /db_xref="CDD:240165" misc_feature complement(order(3373750..3373752,3373861..3373863, 3373873..3373881,3373885..3373887,3373891..3373893)) /gene="yhcO" /locus_tag="SF3279" /note="RNAase interaction site [polypeptide binding]; other site" /db_xref="CDD:240165" gene complement(3374072..3376039) /gene="yhcP" /locus_tag="SF3280" /db_xref="GeneID:1027078" CDS complement(3374072..3376039) /gene="yhcP" /locus_tag="SF3280" /note="Code: S; COG: COG1289" /codon_start=1 /transl_table=11 /product="p-hydroxybenzoic acid efflux subunit AaeB" /protein_id="NP_709037.1" /db_xref="GeneID:1027078" /translation="MGIFSIANQHIRFAVKLATAIVLALFVGFHFQLETPRWAVLTAA IVAAGPAFAAGGEPYSGAIRYRGFLRIIGTFIGCIAGLVIIIAMIRAPLLMILVCCIW AGFCTWISSLVRIENSYAWGLAGYTALIIVITIQPEPLLTPQFAVERCSEIVIGIVCA IMADLLFSPRSIKQEVDRELESLLVAQYQLMQLCIKHGDGEVVDKAWGDLVRRTTALQ GMRSNLNMESSRWARANRRLKAINTLSLTLITQSCETYLIQNTRPELITDTFREFFDT PVETAQDVHKQLKRLRRVIAWTGERETPVTIYSWVAAATRYQLLKRGVISNTKINATE EEILQGEPEVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGSGAMVMIAVVTS LAMRLPNPRMVAIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCISLAVLGFFLGIE VQKRRLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCVLAFTVILLVRDKSR DRTGRVLLNQFVSAAVSAMTTNVARRKENHLPALYQQLFLLMNKFPGDLPKFRLALTM IIAHQRLRDAPIPVNEDLSAFHRQMRRTADHVISARSDDKRRRYFGQLLEELEIYQEK LRIWQAPPQVTEPVHRLAGMLHKYQHALTDS" misc_feature complement(3374078..3376033) /gene="yhcP" /locus_tag="SF3280" /note="p-hydroxybenzoic acid efflux subunit AaeB; Provisional; Region: PRK10631" /db_xref="CDD:182600" gene complement(3376045..3376977) /gene="yhcQ" /locus_tag="SF3281" /db_xref="GeneID:1027077" CDS complement(3376045..3376977) /gene="yhcQ" /locus_tag="SF3281" /note="Code: Q; COG: COG1566" /codon_start=1 /transl_table=11 /product="p-hydroxybenzoic acid efflux subunit AaeA" /protein_id="NP_709038.1" /db_xref="GeneID:1027077" /translation="MKTLIRKFSRTAITVVLVILAFIAIFNAWVYYTESPWTRDARFS ADVVAIAPDVSGLITQVNVHDNQLVKKGQILFTIDQPRYQKALEEAQADVAYYQVLAQ EKRQEAGRRNRLGVQAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAP ADGWVTNLNVYTGEFITRGSTAVALVKQNSFYVLAYMEETKLEGVRPGYRAEITPLGS NKVLKGTVDSVAAGVTNASSTRDDKGMATIDSDLEWVRLAQRVPVRIRLDNQQENIWP AGTTATVVVTGKQDRDESQDSFFRKMAHRLREFG" misc_feature complement(3376048..3376977) /gene="yhcQ" /locus_tag="SF3281" /note="p-hydroxybenzoic acid efflux pump subunit AaeA; Region: PRK10559" /db_xref="CDD:182548" gene complement(3376985..3377257) /locus_tag="SF3281a" /db_xref="GeneID:16608362" CDS complement(3376985..3377257) /locus_tag="SF3281a" /codon_start=1 /transl_table=11 /product="efflux system membrane protein" /protein_id="YP_008439287.1" /db_xref="GeneID:16608362" /translation="MPFSAATDAENNNACSLYTTKVNMSLFPVIVVFGLSFPPIFFEL LLSLAIFWLVRRVLVPTGIYDFVWHPALFNTALYCCLFYLISRLFV" misc_feature complement(3376988..3377188) /locus_tag="SF3281a" /note="efflux system membrane protein; Provisional; Region: PRK11594" /db_xref="CDD:183220" gene 3377389..3378300 /gene="yhcS" /locus_tag="SF3282" /db_xref="GeneID:1027040" CDS 3377389..3378300 /gene="yhcS" /locus_tag="SF3282" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_709039.2" /db_xref="GeneID:1027040" /translation="MSVFAKVVEFGSFTAAARQLQMSVSSISQTVSKLEDELQVKLLN RSTRSIGLTEAGRIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTMAQNVLA GLTAKMLKEYPGLSANLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGAMPMVVC AAKSYLTQYGIPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRFVTNDPM TLVRWLTAGAGIAYVPLMWVINEINRGELEILLPRYQSDPRPVYALYTEKDKLPLKVQ VVINSLTDYFVEVGKLFQEMHGRGKEK" misc_feature 3377389..3378297 /gene="yhcS" /locus_tag="SF3282" /note="HTH-type transcriptional activator AaeR; Region: PRK10632" /db_xref="CDD:182601" gene complement(3378428..3379873) /gene="tldD" /locus_tag="SF3283" /db_xref="GeneID:1027079" CDS complement(3378428..3379873) /gene="tldD" /locus_tag="SF3283" /note="Code: R; COG: COG0312" /codon_start=1 /transl_table=11 /product="protease TldD" /protein_id="NP_709040.1" /db_xref="GeneID:1027079" /translation="MSLNLVSEQLLAANGLKHQDLFAILGQLAERRLDYGDLYFQSSY HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRD SGDGKVQTLGAVEHSPLYTSVDPLQSMSREEKLDILRRVDKVAREADKRVQEVTASLS GVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASGGGGRFGYEFFLADLD GEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAVGHGLEGDFNRR GTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIENGILKGYMQ DKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYGIYAPNFG GGQVDITSGKFVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDLKLDNG VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA" misc_feature complement(3378431..3379873) /gene="tldD" /locus_tag="SF3283" /note="protease TldD; Provisional; Region: tldD; PRK10735" /db_xref="CDD:182685" gene complement(3380029..3383829) /gene="yhdP" /locus_tag="SF3284" /db_xref="GeneID:1026858" CDS complement(3380029..3383829) /gene="yhdP" /locus_tag="SF3284" /experiment="mass spectrum study" /note="Code: S; COG: COG3164" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709041.3" /db_xref="GeneID:1026858" /translation="MRRLPGILLLTGAALVVIAALLVSGLRIALPHLNAWRPEILNKI ESATGMPVEASQLSASWQNFGPTLEAHDIRAELKDGGEFSVKRVTLALDVWQSLLHMR WQFRDLTFWQLRFRTNTPITSGGSDDSLEASHISDLFLRQFDHFDLRDSEVSFLTPSG QRAELAIPQLTWLNDPRRHRAEGLVSLSSLTGQHGVMQVRMDLRDDEGLLSNGRVWLQ ADDIDLKPWLGKWMQDNIALETAQFSLEGWMTIDKGDVTGGDVWLKQGGASWLGEKQT HTLSVDNLTAHITRENPGWQFSIPDTRITMDGKPWPSGALTLAWIPEQDVGGKDNKRS DELRIRASNLELAGLEGIRPLAAKLSPALGDVWRSTQPSGKINTLALDIPLQAADKTR FQASWSDLAWKQWKLLPGAEHFSGTLSGSVENGLLTASMKQAKMPYETVFRAPLEIAD GQATISWLNNDKGFQLDGRNIDVKAKAVHARGGFRYLQPANDEPWLGILAGISTDDGS QAWRYFPENLMGKDLVDYLSGAIQGGEADNATLVYGGNPQLFPYKHNEGQFEVLVPLR NAKFAFQPDWPALTNLDIELDFINDGLWMKTDGVNLGGVRASNLTAVIPDYSKEKLLI DADIKGPGKAVGPYFDETPLKDSLGATLQELQLDGDVNARLHLDIPLNGELVTAKGEV TLRNNSLFIKPLDSILKNLSGKFSFINGDLQSEPLTASWFNQPLNVDFSTKEGAKAYQ VAVNLNGNWQPAKTGVLPEAVNEALSGSVAWDGKVGIDLPYHAGATYNVELNGDLNNV SSHLPSPLAKPAGEPLAVNVKVDGNLNSFELTGQAGADNHFNSRWLLGQKLTLDRAIW AADSKTLPPLPEQSGVELNMPPMNGAEWLALFQKGAAESVGGAASFPQHITLRTPMLS LGNQQWNNLSIVSQPTANGTLVEAQGREINATLAMRNNAPWLANIKYLYYNPSVAKTR GDSTPSSPFPTTERINFRGWPDAQIRCTECWFWGQKFGRIDSDITISGDTLTLTNGLI DTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNVDYDLH WRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTF GEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEIS ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQINEVLRQPRK EKAQ" misc_feature complement(3382531..3383829) /gene="yhdP" /locus_tag="SF3284" /note="Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis]; Region: AsmA; COG2982" /db_xref="CDD:442221" misc_feature complement(3380032..3383097) /gene="yhdP" /locus_tag="SF3284" /note="AsmA2 domain-containing protein; Region: PRK10899" /db_xref="CDD:236789" gene complement(3383897..3385366) /gene="cafA" /locus_tag="SF3285" /db_xref="GeneID:1025290" CDS complement(3383897..3385366) /gene="cafA" /locus_tag="SF3285" /note="Code: J; COG: COG1530" /codon_start=1 /transl_table=11 /product="ribonuclease G" /protein_id="NP_709042.2" /db_xref="GeneID:1025290" /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQD LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE YCDEQGGFIIRTAAEGVGEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQR VLRDFADAELDRIRVDSRLTYEALLEFTSEYIPEMTSKLEHYTGRQPIFDLFDVENEI QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKR TRESIEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE ALKGEESHSLAEVEIFVGKQVKVQIEPLYNQEQFDVVMM" misc_feature complement(3383900..3385366) /gene="cafA" /locus_tag="SF3285" /note="ribonuclease G; Provisional; Region: PRK11712" /db_xref="CDD:183285" gene complement(3385356..3385949) /gene="maf" /locus_tag="SF3286" /db_xref="GeneID:1027066" CDS complement(3385356..3385949) /gene="maf" /locus_tag="SF3286" /note="Code: D; COG: COG0424" /codon_start=1 /transl_table=11 /product="Maf-like protein" /protein_id="NP_709043.1" /db_xref="GeneID:1027066" /translation="MTSLYLASGSPRRQELLAQLGVTFERIVTGIEEQRQPQESAQQY VVRLAREKAQAGVAQTAQDLPVLGADIIVILNGEVLEKPRDAEHAAQMLRKLSGQTHQ VMTAVALADSQHILDCLVVTDVTFRTLTDEDIAGYVASGEPLDKAGAYGIQGLGGCFV RKINGSYHAVVGLPLVETYELLSNFNALREKRDKHDG" misc_feature complement(3385395..3385940) /gene="maf" /locus_tag="SF3286" /note="7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily [Secondary metabolites biosynthesis, transport and catabolism]; Region: Maf; COG0424" /db_xref="CDD:440193" gene complement(3385958..3386446) /gene="mreD" /locus_tag="SF3287" /db_xref="GeneID:1027059" CDS complement(3385958..3386446) /gene="mreD" /locus_tag="SF3287" /note="Code: M; COG: COG2891" /codon_start=1 /transl_table=11 /product="rod shape-determining protein MreD" /protein_id="NP_709044.1" /db_xref="GeneID:1027059" /translation="MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILL YWILALPHRVNVGTGFVMGAILDLISGSMLGVRVLAMSIIAYLVALKYQLFRNLALWQ QALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA VQ" misc_feature complement(3385961..3386446) /gene="mreD" /locus_tag="SF3287" /note="rod shape-determining protein MreD; Provisional; Region: PRK11060" /db_xref="CDD:182936" gene complement(3386446..3387549) /gene="mreC" /locus_tag="SF3288" /db_xref="GeneID:1027037" CDS complement(3386446..3387549) /gene="mreC" /locus_tag="SF3288" /note="Code: M; COG: COG1792" /codon_start=1 /transl_table=11 /product="rod shape-determining protein MreC" /protein_id="NP_709045.1" /db_xref="GeneID:1027037" /translation="MKPIFSRGPSLQIRLILAVLVALGIIIADSRLGTFSQIRTYMDT AVSPFYFVSNAPRELLDGISQTLASRDQLELENRALRQELLLKNSELLMLGQYKQENA RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPKLPEPATGIAQPTPQQPATGNAATA PVAPTQPAANRSPQRATPPQSGAQPPARAPGGQ" misc_feature complement(3386698..3387537) /gene="mreC" /locus_tag="SF3288" /note="rod shape-determining protein MreC; Region: mreC; TIGR00219" /db_xref="CDD:129323" misc_feature complement(<3386455..>3386703) /gene="mreC" /locus_tag="SF3288" /note="pneumococcal surface protein PspC, choline-binding form; Region: PspC_subgroup_1; NF033838" /db_xref="CDD:468201" gene complement(3387615..3388718) /gene="mreB" /locus_tag="SF3289" /db_xref="GeneID:1026494" CDS complement(3387615..3388718) /gene="mreB" /locus_tag="SF3289" /note="Code: D; COG: COG1077" /codon_start=1 /transl_table=11 /product="rod shape-determining protein MreB" /protein_id="NP_709046.4" /db_xref="GeneID:1026494" /translation="MVGKVSGFSFPPQLSGLSLSMLKKFRGMFSNDLSIDLGTANTLI YVKGQGIVLNEPSVVAIRQDRAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIA DFFVTEKMLQHFIKQVHSNSFMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFL IEEPMAAAIGAGLPVSEATGSMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAI INYVRRNYGSLIGEATAERIKHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEI LEALQEPLTGIVSAVMVALEQCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIP VVVAEDPLTCVARGGGKALEMIDMHGGDLFSEE" misc_feature complement(3387624..3388643) /gene="mreB" /locus_tag="SF3289" /note="rod shape-determining protein MreB; Provisional; Region: PRK13927" /db_xref="CDD:237562" gene complement(3388963..3390903) /gene="yhdA" /locus_tag="SF3290" /db_xref="GeneID:1027034" CDS complement(3388963..3390903) /gene="yhdA" /locus_tag="SF3290" /codon_start=1 /transl_table=11 /product="regulatory protein CsrD" /protein_id="NP_709047.1" /db_xref="GeneID:1027034" /translation="MRLTTKFSAFVTLLTGLTIFVTLLGCSLSFYNAIQYKFSHRVQA VATAIDTHLVSNDFSALRPQITELMVSADIVRVDLLHGDKQVYTLARNGSYRPVGTSD LFRELSVPLIKHPGMSLRLVYQDPMGNYFHSLMTTAPLTGAIGFIILMLFLAVRWLQR QLAGQELLETRATRILNGERGSNVLGTIYEWPPRTSSALDTLLREIQNAREQHSRLDT LIRSYAAQDVKTGLNNRLFFDNQLATLLEDQEKVGTHGIVMMIRLPDFNMLSDTWGHS QVEEQFFTLTNLLSTFMMRYPGALLARYHRSDFAALLPHRTLKEAESIASQLIKAVDT LPNNKMLDRDDMIHIGICAWRSGQDTEQVMEHAESATRNAGLQGGNSWAIYDDSLPEK GRGNVRWRTLIEQMLSRGGPRLYQKPAVTREGQVHHRELMCRIFDGNEEVSSAEYMPM VLQFGLSEEYDRLQISRLIPLLRYWPEENLAIQVTVESLIRPRFQRWLRDTLMQCEKS QRKRIIIELAEADVGQHISRLQPVIRLVNALGVRVAVNQAGLTLVSTSWIKELNVELL KLHPGLVRNIEKRTENQLLVQSLVEACSGTSTHVYATGVRSRSEWQTLIQRGVTGGQG DFFASSQPLDTNVKKYSQRYSV" misc_feature complement(3389002..3390903) /gene="yhdA" /locus_tag="SF3290" /note="regulatory protein CsrD; Provisional; Region: PRK11059" /db_xref="CDD:236833" gene 3391055..3392029 /gene="yhdH" /locus_tag="SF3291" /db_xref="GeneID:1027076" CDS 3391055..3392029 /gene="yhdH" /locus_tag="SF3291" /note="Code: CR; COG: COG0604" /codon_start=1 /transl_table=11 /product="dehydrogenase" /protein_id="NP_709048.1" /db_xref="GeneID:1027076" /translation="MQALLLEQQDGKTLASVQTLDERRLPEGDVTVDVHWSSLNYKDA LAITGKGKIIRNFPMIPGIDFAGTVRTSEDPRFHAGQEVLLTGWGVGENHWGGLAEQA RVKGDWLVAMPQGLDARKAMIIGTAGFTAMLCVMALEDAGVRPQDGEIVVTGASGGVG STAVALLHKLGYQVVAVSGRESTHEYLKSLGASGILPRDEFAESRPLEKQVWAGAIDT VGDKVLAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDSVMTPPERRA QAWQRLVADLPESFYTQAAKEISLSEAPNFAEAIINNQIQGRTLVKVN" misc_feature 3391055..3392023 /gene="yhdH" /locus_tag="SF3291" /note="Yhdh putative quinone oxidoreductases; Region: MDR_yhdh; cd08288" /db_xref="CDD:176248" misc_feature order(3391172..3391177,3391430..3391435,3391442..3391444, 3391514..3391516,3391520..3391531,3391586..3391594, 3391646..3391648,3391706..3391711,3391772..3391786, 3391847..3391858,3391982..3391984,3391991..3391993, 3391997..3391999) /gene="yhdH" /locus_tag="SF3291" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:176248" misc_feature order(3391670..3391672,3391751..3391753,3391769..3391780, 3391796..3391798,3391802..3391813,3391817..3391825, 3391829..3391852,3391859..3391864) /gene="yhdH" /locus_tag="SF3291" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176248" gene 3392227..3392602 /locus_tag="SF3292" /pseudogene="unknown" /db_xref="GeneID:1023662" gene 3393007..3393477 /gene="accB" /locus_tag="SF3293" /db_xref="GeneID:1027068" CDS 3393007..3393477 /gene="accB" /locus_tag="SF3293" /note="Code: I; COG: COG0511" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase biotin carboxyl carrier protein subunit" /protein_id="NP_709050.1" /db_xref="GeneID:1027068" /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRAAPAASFPVM QQAYAAPMMQQPAQSNAAAPATVPSMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF IEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQPVEFDEPLVVIE" misc_feature 3393007..3393474 /gene="accB" /locus_tag="SF3293" /note="acetyl-CoA carboxylase, biotin carboxyl carrier protein; Region: BCCP; TIGR00531" /db_xref="CDD:273123" gene 3393488..3394837 /gene="accC" /locus_tag="SF3294" /db_xref="GeneID:1027070" CDS 3393488..3394837 /gene="accC" /locus_tag="SF3294" /note="Code: I; COG: COG0439" /codon_start=1 /transl_table=11 /product="acetyl-CoA carboxylase biotin carboxylase subunit" /protein_id="NP_709051.2" /db_xref="GeneID:1027070" /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSTDRDLKHVLL ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF IGPKAETIRLMGDKVSAIAAMKKAGVPCVPGSDGPLGDDMDKNRAIAKRIGYPVIIKA SGGGGCRGMRVVRGDAELAQSISMTRAEAKAAFSNDMVYMEKYLENPRHVEIQVLADG QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSIKQEEVHVRGHA VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG ENRDVAIARMKNALQELIIDGIKTNVDLQIRIMNDENFQHGGTNIHYLEKKLGLQEK" misc_feature 3393488..3394834 /gene="accC" /locus_tag="SF3294" /note="acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591" /db_xref="CDD:236307" gene 3394946..3395188 /gene="yhdT" /locus_tag="SF3295" /db_xref="GeneID:1027082" CDS 3394946..3395188 /gene="yhdT" /locus_tag="SF3295" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709052.1" /db_xref="GeneID:1027082" /translation="MDTRFVQAHKEARWALGLTLLYLAVWLVDAYLPGVAPGFTGFPR WFEMACILTPLLFIGLCWAMVKFIYRDIPLEDDDAA" misc_feature 3394946..3395185 /gene="yhdT" /locus_tag="SF3295" /note="hypothetical protein; Provisional; Region: PRK10633" /db_xref="CDD:182602" gene 3395178..3396629 /gene="panF" /locus_tag="SF3296" /db_xref="GeneID:1027054" CDS 3395178..3396629 /gene="panF" /locus_tag="SF3296" /note="Code: EHR; COG: COG0591" /codon_start=1 /transl_table=11 /product="sodium/panthothenate symporter" /protein_id="NP_709053.2" /db_xref="GeneID:1027054" /translation="MQLEVILPLVAYLVVVFGISVYAMRKRSTGTFLNEYFLGSRSMG GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFVGAMTVQFIGGARLLETAAGIPYET GLLIFGISIALYTAFGGFRASVLNDTMQGLVMLIGTVVLLIGVVHAAGGLSNAVQTLQ TIDPQLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG TIIVAILMFGMHLAGALGRAVIPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS TINAQLLQSSATIIKDLYLNIRPDQMQNETRLKRMSAVITLVLGALLLLAAWKPPEMI IWLNLLAFGGLEAVFLWPLVLGLYWERANAKGALSAMIVGGVLYAVLATLNIQYLGFH PIVPSLLLSLLAFLVGNRFGTSVPQATVLTTDK" misc_feature 3395178..3396611 /gene="panF" /locus_tag="SF3296" /note="Na+/panthothenate symporter [Coenzyme transport and metabolism]; Region: PanF; COG4145" /db_xref="CDD:443316" gene 3396641..3397522 /gene="prmA" /locus_tag="SF3297" /db_xref="GeneID:1027044" CDS 3396641..3397522 /gene="prmA" /locus_tag="SF3297" /note="Code: J; COG: COG2264" /codon_start=1 /transl_table=11 /product="ribosomal protein L11 methyltransferase" /protein_id="NP_709054.1" /db_xref="GeneID:1027044" /translation="MPWIQLKLNTTGANAEDLSDALMEAGAVSITFQDTHDTPVFEPL PGETRLWGDTDVIGLFDAETDMNDVVAILENHPLLGAGFAHKIEQLEDKDWEREWMDN FHPMRFGERLWICPSWRDVPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDSLDLTGK TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ PEEMKADVVVANILAGPLRELAPLISVLPVSGGLLGLSGILASQAESVCEAYADSFAL DPVVEKEEWCRITGRKN" misc_feature 3396647..3397498 /gene="prmA" /locus_tag="SF3297" /note="ribosomal protein L11 methyltransferase; Region: prmA; TIGR00406" /db_xref="CDD:273061" gene 3397974..3398816 /gene="yhdG" /locus_tag="SF3298" /db_xref="GeneID:1023434" CDS 3397974..3398816 /gene="yhdG" /locus_tag="SF3298" /note="Code: R; COG: COG0042" /codon_start=1 /transl_table=11 /product="dehydrogenase" /protein_id="NP_709055.2" /db_xref="GeneID:1023434" /translation="MSSNPQVWESDKSRLRMVHIDEPGIRTVQIAGSAPKEMADAARI NVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDVVKSILTEVVNAVDVPVTLKIRTG WAPEHRNCEEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANG DITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLL CAHVRELHDFYGPAKGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQLEALEAYF ENFA" misc_feature 3397974..3398813 /gene="yhdG" /locus_tag="SF3298" /note="A large family of domains similar to triose phosphate isomerase (TIM) which, in general, share an eight beta/alpha closed barrel structure; Region: TIM-like beta/alpha barrel domains; cl21457" /db_xref="CDD:473867" misc_feature order(3398058..3398060,3398148..3398153,3398265..3398267, 3398271..3398273,3398352..3398357,3398361..3398366, 3398451..3398456,3398523..3398525) /gene="yhdG" /locus_tag="SF3298" /note="active site" /db_xref="CDD:239200" misc_feature order(3398148..3398150,3398271..3398273,3398355..3398357, 3398361..3398363) /gene="yhdG" /locus_tag="SF3298" /note="catalytic residues [active]" /db_xref="CDD:239200" misc_feature order(3398151..3398153,3398265..3398267,3398352..3398354, 3398364..3398366,3398451..3398456) /gene="yhdG" /locus_tag="SF3298" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:239200" gene 3398842..3399138 /gene="fis" /locus_tag="SF3299" /db_xref="GeneID:1027065" CDS 3398842..3399138 /gene="fis" /locus_tag="SF3299" /note="Code: KL; COG: COG2901" /codon_start=1 /transl_table=11 /product="Fis family transcriptional regulator" /protein_id="NP_709056.1" /db_xref="GeneID:1027065" /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN" misc_feature 3398851..3399135 /gene="fis" /locus_tag="SF3299" /note="DNA-binding transcriptional regulator Fis; Region: fis; PRK00430" /db_xref="CDD:179020" gene 3399224..3400108 /gene="yhdJ" /locus_tag="SF3300" /db_xref="GeneID:1025283" CDS 3399224..3400108 /gene="yhdJ" /locus_tag="SF3300" /note="Code: L; COG: COG0863" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="NP_709057.2" /db_xref="GeneID:1025283" /translation="MRTGCEPTRFGNEAKTIIHGDAFAELKKLPTESVDLLFADPPYN IGKNFDGLIEAWKEDLFIDWLFEVIAECHRVLKKQGSMYIMNSTENMPFIDLQCRKLF TIKSRIVWSYDSSGVQAKKHYGSMYEPILMMVKDAKNYTFNGDAILVEAKTGSQRALI DYRKNPPQPYNHQKVPGNVWDFPRVRYLMDEYENHPTQKPKALLKRIILASSNPGDIV LDPFAGSFTTGAVAIASGRKFIGIEINSEYIKMGLRRLDVASHYSAEELAKVKKRKTG NLSKRSRLSEVDPDLIAK" misc_feature 3399242..3400093 /gene="yhdJ" /locus_tag="SF3300" /note="adenine-specific DNA-methyltransferase; Region: PRK11524" /db_xref="CDD:183177" gene 3400165..3400392 /gene="yhdU" /locus_tag="SF3301" /db_xref="GeneID:1027056" CDS 3400165..3400392 /gene="yhdU" /locus_tag="SF3301" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709058.1" /db_xref="GeneID:1027056" /translation="MVKHAQAQVMIRKYWWLVVFAVFVFLFDTLLMQWIELLTTETDK CRNMNSVNPLKLVNCDELNFQDRMSVMTPTY" misc_feature 3400192..3400350 /gene="yhdU" /locus_tag="SF3301" /note="Protein of unknown function (DUF2556); Region: DUF2556; pfam10831" /db_xref="CDD:431515" mobile_element complement(3400371..3401138) /mobile_element_type="insertion sequence:IS1" gene complement(3400386..3400889) /gene="insB" /locus_tag="SF3302" /db_xref="GeneID:1027039" CDS complement(3400386..3400889) /gene="insB" /locus_tag="SF3302" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709059.1" /db_xref="GeneID:1027039" /translation="MSRQRTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature complement(3400389..3400781) /gene="insB" /locus_tag="SF3302" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3400964..3401290 /locus_tag="SF3303" /db_xref="GeneID:1027043" CDS 3400964..3401290 /locus_tag="SF3303" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709060.1" /db_xref="GeneID:1027043" /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL KSPSYTKSVSWQHYPFSHHCGALFLLFPVYTQLIATRNRAQKLALLLLIRGWPQTGKR RFPNVL" gene 3401319..3402344 /gene="yhdW" /locus_tag="SF3304" /db_xref="GeneID:1027049" CDS 3401319..3402344 /gene="yhdW" /locus_tag="SF3304" /note="Code: E; COG: COG0834" /codon_start=1 /transl_table=11 /product="substrate-binding transport protein" /protein_id="NP_709061.1" /db_xref="GeneID:1027049" /translation="MKKMMIATLAAASVLLAVANQAHAGATLDAVQKKGFVQCGISDG LPRFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVKYTPLTAKERFTALQSGEVDLLS RNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGLKSAKELDGATVCIQAGTDTELN VADYFKANNMKYTPVTFDRSDESAKALESGRCDTLASDQSQLYALRIKLSNPAEWIVL PEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEEMGINSQNVDEKAANPATPDMAH LLGKEGDYGKDLKLDNKWAYNIIKQVSNYSEIFERNVGSESPLKIKRGQNNLWNNGGI QYAPPVR" misc_feature 3401400..3402107 /gene="yhdW" /locus_tag="SF3304" /note="Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold; Region: PBP2_BztA; cd13692" /db_xref="CDD:270410" misc_feature order(3401442..3401444,3401451..3401453,3401583..3401585, 3401628..3401630,3401649..3401651,3401781..3401786, 3401907..3401912,3401997..3401999) /gene="yhdW" /locus_tag="SF3304" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:270410" misc_feature order(3401469..3401471,3401481..3401483,3401853..3401855, 3401862..3401864) /gene="yhdW" /locus_tag="SF3304" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:270410" gene 3402394..3402979 /locus_tag="SF3305" /pseudogene="unknown" /db_xref="GeneID:1027057" mobile_element complement(3402958..3403725) /mobile_element_type="insertion sequence:IS1" gene complement(3402973..3403368) /gene="insB" /locus_tag="SF3306" /db_xref="GeneID:1027055" CDS complement(3402973..3403368) /gene="insB" /locus_tag="SF3306" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709063.1" /db_xref="GeneID:1027055" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3402976..3403365) /gene="insB" /locus_tag="SF3306" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3403395..3403670) /gene="insA" /locus_tag="SF3307" /db_xref="GeneID:1023414" CDS complement(3403395..3403670) /gene="insA" /locus_tag="SF3307" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709064.1" /db_xref="GeneID:1023414" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3403398..3403649) /gene="insA" /locus_tag="SF3307" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3403726..3404266 /gene="yhdX" /locus_tag="SF3308" /pseudo /db_xref="GeneID:1025447" misc_feature 3403726..3404266 /gene="yhdX" /locus_tag="SF3308" /note="Similar to Escherichia coli K12 transport system permease gi: 1789669 (369 aa). BLAST with identity of 97% in 180 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene 3404368..3405471 /gene="yhdY" /locus_tag="SF3309" /db_xref="GeneID:1027042" CDS 3404368..3405471 /gene="yhdY" /locus_tag="SF3309" /note="Code: E; COG: COG0765" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_709065.2" /db_xref="GeneID:1027042" /translation="MTKVLLSQPSRPASHNSSRAMVWVRKNLFSSWSNSLLTIGCIWL MWELIPPLLNWAFLQANWVGSTRADCTKAGACWVFIHERFGQFMYGLYPHDQRWRINL ALLIGLVSIAPMFWKILPHRGRYIAAWAVIYPLIVWWLMYGGFFGLERVETRQWGGLT LTLIIASVGIAGALPWGILLALGRRSHMPIVRILSVIFIEFWRGVPLITVLFMSSVML PLFMAEGTSIDKLIRALVGVILFQSAYVAEVVRGGLQALPKGQYEAAESLALGYWKTQ GLVILPQALKLVIPGLVNTIIALFKDTSLVIIIGLFDLFSSVQQATVDPAWLGMSTEG YVFAALIYWIFCFSMSRYSQHLEKRFNTGRTPH" misc_feature 3404833..3405459 /gene="yhdY" /locus_tag="SF3309" /note="ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Region: HisM; COG0765" /db_xref="CDD:440528" gene 3405479..3406237 /gene="yhdZ" /locus_tag="SF3310" /db_xref="GeneID:1027053" CDS 3405479..3406237 /gene="yhdZ" /locus_tag="SF3310" /note="Code: E; COG: COG1126" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_709066.1" /db_xref="GeneID:1027053" /translation="MSQILLQPANAMITLENVHKWYGQFHVLKNINLTVQPGERIVLC GPSGSGKSTTIRCINHLEEHQQGRIVVDGIELNEDIRNIERVRQEVGMVFQHFNLFPH LTVLQNCTLAPIWVRKMPKKEAEALAMHYLERVRIAEHAHKFPGQISGGQQQRVAIAR SLCMKPKIMLFDEPTSALDPEMVKEVLDTMIGLAQSGMTMLCVTHEMGFARTVADRVI FMDRGEIVEQATPDEFFAHPKSERTRAFLSQVIH" misc_feature 3405512..3406228 /gene="yhdZ" /locus_tag="SF3310" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:440743" gene complement(3406298..3406416) /gene="rrfF" /locus_tag="SF4511" /db_xref="GeneID:1027022" rRNA complement(3406298..3406416) /gene="rrfF" /locus_tag="SF4511" /product="5S ribosomal RNA" /db_xref="GeneID:1027022" gene complement(3406455..3406530) /locus_tag="SF4512" /db_xref="GeneID:3161780" tRNA complement(3406455..3406530) /locus_tag="SF4512" /product="tRNA-Thr" /codon_recognized="ACC" /db_xref="GeneID:3161780" gene complement(3406543..3406661) /gene="rrfD" /locus_tag="SF4513" /db_xref="GeneID:1027058" rRNA complement(3406543..3406661) /gene="rrfD" /locus_tag="SF4513" /product="5S ribosomal RNA" /db_xref="GeneID:1027058" gene complement(3406756..3409659) /gene="rrlD" /locus_tag="SF4514" /db_xref="GeneID:1026860" rRNA complement(3406756..3409659) /gene="rrlD" /locus_tag="SF4514" /product="23S ribosomal RNA" /db_xref="GeneID:1026860" gene complement(3409853..3409928) /locus_tag="SF4515" /db_xref="GeneID:3161803" tRNA complement(3409853..3409928) /locus_tag="SF4515" /product="tRNA-Glu" /codon_recognized="GAA" /db_xref="GeneID:3161803" gene complement(3410014..3411555) /gene="rrsD" /locus_tag="SF4516" /db_xref="GeneID:1027021" rRNA complement(3410014..3411555) /gene="rrsD" /locus_tag="SF4516" /product="16S ribosomal RNA" /db_xref="GeneID:1027021" gene 3411809..3412579 /gene="yrdA" /locus_tag="SF3311" /db_xref="GeneID:1026862" CDS 3411809..3412579 /gene="yrdA" /locus_tag="SF3311" /note="Code: R; COG: COG0663" /codon_start=1 /transl_table=11 /product="transferase" /protein_id="NP_709067.2" /db_xref="GeneID:1026862" /translation="MKCFTLSSQRRRIIGIPIFCTSIFLIFFSVCCFFTLFAAIAHKT VLFCILKDLHKANNAPKVISKSFIAEVSMSDVLRPYRDLFPQIGQRVMIDDSSVVIGD VRLADDVGIWPLVVIRGDVHYVQIGARTNIQDGSMLHVTHKSSYNPDGNPLTIGEDVT VGHKVMLHGCTIGNRVLVGMGSILLDGAIVEDDVMIGAGSLVPQNKRLESGYLYLGSP VKQIRPLSDEEKAGLRYSANNYVKWKDEYLDQGNQTQP" misc_feature 3412037..3412558 /gene="yrdA" /locus_tag="SF3311" /note="Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663" /db_xref="CDD:440427" gene complement(3412555..3412812) /gene="yrdB" /locus_tag="SF3312" /db_xref="GeneID:1027050" CDS complement(3412555..3412812) /gene="yrdB" /locus_tag="SF3312" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709068.1" /db_xref="GeneID:1027050" /translation="MNQAIQFPDREEWDENKKCVCFPALVNGMQLTCAISGESLAYRF TGDTPEQWLASFRQHRWDLEEEADNLIQEQSEDDQGWVWLP" misc_feature complement(3412561..3412800) /gene="yrdB" /locus_tag="SF3312" /note="Protein of unknown function (DUF1488); Region: DUF1488; pfam07369" /db_xref="CDD:429431" gene complement(3412809..3413627) /gene="aroE" /locus_tag="SF3313" /db_xref="GeneID:1026495" CDS complement(3412809..3413627) /gene="aroE" /locus_tag="SF3313" /note="Code: E; COG: COG0169" /codon_start=1 /transl_table=11 /product="shikimate 5-dehydrogenase" /protein_id="NP_709069.2" /db_xref="GeneID:1026495" /translation="METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFI NTLNAFFRAGGKGANVTVPFKEEAFARADELTERAALAGAVNTLKRLEDGRLLGDNTD GVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAK LFAHTGSIQALGMDELEGHEFDLIINATSSGISGDIPAIPSSLIHPGIYCYDMFYQKG KTPFLAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEELSA" misc_feature complement(3412815..3413624) /gene="aroE" /locus_tag="SF3313" /note="shikimate dehydrogenase; Region: aroE; TIGR00507" /db_xref="CDD:161904" gene complement(3413632..3414204) /gene="yrdC" /locus_tag="SF3314" /db_xref="GeneID:1027023" CDS complement(3413632..3414204) /gene="yrdC" /locus_tag="SF3314" /note="Code: J; COG: COG0009" /codon_start=1 /transl_table=11 /product="tRNA(ANN) t(6)A37 threonylcarbamoyladenosine modification protein" /protein_id="NP_709070.2" /db_xref="GeneID:1027023" /translation="MNNNLQGDAIAAAIDVLNEKRVIAYPTEAVFGVGCDPDSETAVM RLLELKQRPVDKGLILIAANYEQLKPYIDDTMLTDVQRETIFSCWPGPVTFVFPAPAT TPRWLTGRFDSLAVRVTDHPLVVALCQAYGKPLVSTSANLSGLPPCRTVDEVRAQFGA AFPVVPGETRGRLNPSEIRDALTGELFRQG" misc_feature complement(3413635..3414204) /gene="yrdC" /locus_tag="SF3314" /note="L-threonylcarbamoyladenylate synthase type 1 TsaC; Region: PRK10634" /db_xref="CDD:182603" gene complement(3414209..3414727) /gene="yrdD" /locus_tag="SF3315" /db_xref="GeneID:1027035" CDS complement(3414209..3414727) /gene="yrdD" /locus_tag="SF3315" /note="Code: L; COG: COG0551" /codon_start=1 /transl_table=11 /product="DNA topoisomerase" /protein_id="NP_709071.2" /db_xref="GeneID:1027035" /translation="MRNNESCPKCGAELVIRSGKHGPFLGCSQYPACDYVRPLKSSAD GHIVKVLEGQVCPVCGANLVLRQGRFGMFIGCSNYPECEHTELIDKPDETAITCPQCR TGHLVQRRSRYGKTFHSCDRYPECQFAINFKPIAGECPECHYPLLIEKKTAQGVKHFC ASKQCGKPVSAE" misc_feature complement(3414476..>3414718) /gene="yrdD" /locus_tag="SF3315" /note="DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair]; Region: YrdD; COG0551" /db_xref="CDD:440317" misc_feature complement(3414227..>3414592) /gene="yrdD" /locus_tag="SF3315" /note="DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair]; Region: YrdD; COG0551" /db_xref="CDD:440317" gene complement(3414780..3415238) /gene="smg" /locus_tag="SF3316" /db_xref="GeneID:1026863" CDS complement(3414780..3415238) /gene="smg" /locus_tag="SF3316" /note="Code: S; COG: COG2922" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709072.2" /db_xref="GeneID:1026863" /translation="MYLFETYIHTEAELRVDQDKLEQDLTDAGFEREDIYNALLWLEK LADYQEGLAEPMQLASDPLSMRIYTPEECERLDASCRGFLLFLEQIQVLNLETREMVI ERVLALDNAEFELDDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH" misc_feature complement(3414783..3415238) /gene="smg" /locus_tag="SF3316" /note="hypothetical protein; Validated; Region: PRK03430" /db_xref="CDD:235125" gene complement(3415225..3416349) /gene="smf" /locus_tag="SF3317" /db_xref="GeneID:1027028" CDS complement(3415225..3416349) /gene="smf" /locus_tag="SF3317" /note="Code: LN; COG: COG0758" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709073.2" /db_xref="GeneID:1027028" /translation="MVDIEIWLRLMSISSLYGDDMVRIAHWLAKQSHIDAVVLQQTGL TLRQAQRFLSFPRKSIESSLCWLEQPNHHLIPADSEFYPPQLQATTDYPGALFVEGEL HALHSFQLAVVGSRAHSWYGERWGRLFCETLATCGVTITSGLARGIDGVVHKAALQVN GVSIAVLGNGLNTIHPRRHARLAASLFEQGGALVSEFPLDVPPLAYNFPRRNRIISGL SKGVLVVEAALRSGSLVTARCALEQGREVFALPGPIGNPGSEGPHWLIKQGAILVTEP EEILENLQFGLHWLPDAPENSFYSPDQQDVALPFPELLANVGDEVTPVDVVAERAGQP VPEVVTQLLELELAGWIAAVPGGYVRLRRACHVRRTNVFV" misc_feature complement(3415228..3416349) /gene="smf" /locus_tag="SF3317" /note="DNA-protecting protein DprA; Region: PRK10736" /db_xref="CDD:236747" gene 3416514..3417023 /gene="def" /locus_tag="SF3318" /db_xref="GeneID:1027015" CDS 3416514..3417023 /gene="def" /locus_tag="SF3318" /note="Code: J; COG: COG0242" /codon_start=1 /transl_table=11 /product="peptide deformylase" /protein_id="NP_709074.1" /db_xref="GeneID:1027015" /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP RAEKVKIRALDRDGKPFELEAEGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVE KLDRLKARA" misc_feature 3416514..3417002 /gene="def" /locus_tag="SF3318" /note="peptide deformylase; Reviewed; Region: def; PRK00150" /db_xref="CDD:234668" misc_feature order(3416643..3416651,3416664..3416666,3416781..3416789, 3416910..3416915,3416922..3416924) /gene="def" /locus_tag="SF3318" /note="active site" /db_xref="CDD:238271" misc_feature order(3416649..3416651,3416664..3416666,3416787..3416789, 3416913..3416915) /gene="def" /locus_tag="SF3318" /note="catalytic residues [active]" /db_xref="CDD:238271" misc_feature order(3416784..3416786,3416910..3416912,3416922..3416924) /gene="def" /locus_tag="SF3318" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238271" gene 3417038..3417985 /gene="fmt" /locus_tag="SF3319" /db_xref="GeneID:1027026" CDS 3417038..3417985 /gene="fmt" /locus_tag="SF3319" /note="Code: J; COG: COG0223" /codon_start=1 /transl_table=11 /product="methionyl-tRNA formyltransferase" /protein_id="NP_709075.1" /db_xref="GeneID:1027026" /translation="MSESLRIIFAGTPDFAARHLDALLSSGHNVVGVFTQPDRPAGRG KKLMPSPIKVLAEEEGLPVFQPVSLRPQENQQLVADLQADVMVVVAYGLILPKAVLEM PRLGCINIHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPIT AEDTSGTLYDKLAELGPQGLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWS LSAAQLERCIRAFNPWPMSWLEIEGQPVKVWKASVIDTATNAAPGTILEANKQGIQVA TGDGILNLLSLQPAGKKAMSAQDLLNSRREWFVPGNRLV" misc_feature 3417050..3417979 /gene="fmt" /locus_tag="SF3319" /note="Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]; Region: Fmt; COG0223" /db_xref="CDD:439993" gene 3418031..3419320 /gene="sun" /locus_tag="SF3320" /db_xref="GeneID:1027014" CDS 3418031..3419320 /gene="sun" /locus_tag="SF3320" /note="Code: J; COG: COG0144" /codon_start=1 /transl_table=11 /product="16S rRNA m5C967 methyltransferase" /protein_id="NP_709076.2" /db_xref="GeneID:1027014" /translation="MKKQRNLRSMAAQAVEQVVEQGQSLSNILPPLQQKVSDKDKALL QELCFGVLRTLSQLDWLINKLMARPMTGKQRTVHYLIMVGLYQLLYTRIPPHAALAET VEGAIAIKRPQLKGLINGVLRQFQRRQEELLAEFNTRDARYLHPSWLLKRLQKAYPEQ WQSIAEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVH ALPGFEDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAV DIDEQRLSRIYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH PDIKWLRRDRDIPELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSLQIKAFLQR TADAELCETGTPEQPGKQNQPGAEEGDGFFYAKLIKK" misc_feature 3418046..3419314 /gene="sun" /locus_tag="SF3320" /note="16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; Region: PRK10901" /db_xref="CDD:236790" gene 3419342..3420718 /gene="trkA" /locus_tag="SF3321" /db_xref="GeneID:1027048" CDS 3419342..3420718 /gene="trkA" /locus_tag="SF3321" /note="Code: P; COG: COG0569" /codon_start=1 /transl_table=11 /product="potassium transporter membrane protein" /protein_id="NP_709077.1" /db_xref="GeneID:1027048" /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRTLQDKFD LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP DYVRDADKLFHSDAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERNQQRAAELAEKLQN TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL FQPSPFFL" misc_feature 3419342..3420709 /gene="trkA" /locus_tag="SF3321" /note="Trk system potassium transporter TrkA; Region: trkA; PRK09496" /db_xref="CDD:236541" mobile_element complement(3420817..3423570) /mobile_element_type="insertion sequence:ISSfl4" gene 3420899..3421573 /locus_tag="SF3322" /db_xref="GeneID:1025293" CDS 3420899..3421573 /locus_tag="SF3322" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 transposase" /protein_id="NP_709078.1" /db_xref="GeneID:1025293" /translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE FKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALT DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE MKGGIR" misc_feature 3420932..3421516 /locus_tag="SF3322" /note="IS66-like element accessory protein TnpA; Region: IS66_access_TnpA; NF038385" /db_xref="CDD:439678" gene 3421570..3421917 /locus_tag="SF3323" /db_xref="GeneID:1027029" CDS 3421570..3421917 /locus_tag="SF3323" /note="Code: L; COG: COG3436" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 ORF2" /protein_id="NP_709079.1" /db_xref="GeneID:1027029" /translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF VFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAW PHPKRTERPGIRI" misc_feature 3421597..3421866 /locus_tag="SF3323" /note="IS66 family insertion sequence element accessory protein TnpB; Region: IS66_TnpB; NF033819" /db_xref="CDD:411392" gene 3421937..3423538 /locus_tag="SF3324" /db_xref="GeneID:1027020" CDS 3421937..3423538 /locus_tag="SF3324" /note="Code: L; COG: COG3436" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 transposase" /protein_id="NP_709080.1" /db_xref="GeneID:1027020" /translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP PSENPIASKPEFPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADA YAGYNVLYETGRVKEAGCLAHARRKTHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG RVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLRE VIEKLNDWPSNQVHELLPWNFSSVK" misc_feature 3422051..3422332 /locus_tag="SF3324" /note="Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007" /db_xref="CDD:463771" misc_feature 3422279..3423475 /locus_tag="SF3324" /note="IS66 family transposase; Region: transpos_IS66; NF033517" /db_xref="CDD:468053" mobile_element 3423570..3423911 /note="partial" /mobile_element_type="insertion sequence:ISSfl4" gene complement(3423999..3424382) /gene="rplQ" /locus_tag="SF3326" /db_xref="GeneID:1027046" CDS complement(3423999..3424382) /gene="rplQ" /locus_tag="SF3326" /note="Code: J; COG: COG0203" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L17" /protein_id="NP_709082.1" /db_xref="GeneID:1027046" /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF RAGDNAPMAYIELVDRSEKAEAAAE" misc_feature complement(3424020..3424382) /gene="rplQ" /locus_tag="SF3326" /note="Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]; Region: RplQ; COG0203" /db_xref="CDD:439973" gene complement(3424423..3425412) /gene="rpoA" /locus_tag="SF3327" /db_xref="GeneID:1027027" CDS complement(3424423..3425412) /gene="rpoA" /locus_tag="SF3327" /note="Code: K; COG: COG0202" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit alpha" /protein_id="NP_709083.1" /db_xref="GeneID:1027027" /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE" misc_feature complement(3424447..3425397) /gene="rpoA" /locus_tag="SF3327" /note="DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Transcription]; Region: RpoA; COG0202" /db_xref="CDD:439972" gene complement(3425438..3426046) /gene="rpsD" /locus_tag="SF3328" /db_xref="GeneID:1027033" CDS complement(3425438..3426046) /gene="rpsD" /locus_tag="SF3328" /note="Code: J; COG: COG0522" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S4" /protein_id="NP_709084.2" /db_xref="GeneID:1027033" /translation="MGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGARKPRL SDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVVYRMG FGATRAEARQLVSHKAIMVPGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALELAEQ REKPTWLEVDAGKMEGTFKRKPERSDLSADINEHLIVELYSK" misc_feature complement(3425441..3426043) /gene="rpsD" /locus_tag="SF3328" /note="Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Region: RpsD; COG0522" /db_xref="CDD:440288" gene complement(3426092..3426481) /gene="rpsK" /locus_tag="SF3329" /db_xref="GeneID:1027041" CDS complement(3426092..3426481) /gene="rpsK" /locus_tag="SF3329" /note="Code: J; COG: COG0100" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S11" /protein_id="NP_709085.1" /db_xref="GeneID:1027041" /translation="MAKAPIRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA AGFRITNITDVTPIPHNGCRPPKKRRV" misc_feature complement(3426095..3426478) /gene="rpsK" /locus_tag="SF3329" /note="30S ribosomal protein S11; Validated; Region: PRK05309" /db_xref="CDD:180007" gene complement(3426498..3426854) /gene="rpsM" /locus_tag="SF3330" /db_xref="GeneID:1026992" CDS complement(3426498..3426854) /gene="rpsM" /locus_tag="SF3330" /note="Code: J; COG: COG0099" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S13" /protein_id="NP_709086.1" /db_xref="GeneID:1026992" /translation="MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVK ISELSEGQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT KTNARTRKGPRKPIKK" misc_feature complement(3426501..3426854) /gene="rpsM" /locus_tag="SF3330" /note="30S ribosomal protein S13; Validated; Region: rpsM; PRK05179" /db_xref="CDD:235358" gene complement(3427001..3427117) /gene="rpmJ" /locus_tag="SF3331" /db_xref="GeneID:1027024" CDS complement(3427001..3427117) /gene="rpmJ" /locus_tag="SF3331" /note="Code: J; COG: COG0257" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L36" /protein_id="NP_709087.1" /db_xref="GeneID:1027024" /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG" misc_feature complement(3427004..3427117) /gene="rpmJ" /locus_tag="SF3331" /note="Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Region: RpmJ; COG0257" /db_xref="CDD:440027" gene complement(3427149..3428480) /gene="secY" /locus_tag="SF3332" /db_xref="GeneID:1026864" CDS complement(3427149..3428480) /gene="secY" /locus_tag="SF3332" /note="Code: N; COG: COG0201" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecY" /protein_id="NP_709088.1" /db_xref="GeneID:1026864" /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTA VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMR DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR" misc_feature complement(3427179..3428429) /gene="secY" /locus_tag="SF3332" /note="Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular transport]; Region: SecY; COG0201" /db_xref="CDD:439971" gene complement(3428488..3428922) /gene="rplO" /locus_tag="SF3333" /db_xref="GeneID:1027045" CDS complement(3428488..3428922) /gene="rplO" /locus_tag="SF3333" /note="Code: J; COG: COG0200" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L15" /protein_id="NP_709089.1" /db_xref="GeneID:1027045" /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIG IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE" misc_feature complement(3428491..3428922) /gene="rplO" /locus_tag="SF3333" /note="Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Region: RplO; COG0200" /db_xref="CDD:439970" gene complement(3428926..3429105) /gene="rpmD" /locus_tag="SF3334" /db_xref="GeneID:1027036" CDS complement(3428926..3429105) /gene="rpmD" /locus_tag="SF3334" /note="Code: J; COG: COG1841" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L30" /protein_id="NP_709090.1" /db_xref="GeneID:1027036" /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAI RGMINAVSFMVKVEE" misc_feature complement(3428929..3429102) /gene="rpmD" /locus_tag="SF3334" /note="50S ribosomal protein L30; Reviewed; Region: rpmD; PRK05611" /db_xref="CDD:180163" misc_feature complement(order(3428965..3428970,3428974..3428982, 3428989..3428994,3429007..3429009,3429016..3429018, 3429022..3429030,3429037..3429042,3429049..3429057, 3429061..3429066,3429070..3429075)) /gene="rpmD" /locus_tag="SF3334" /note="23S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:100100" gene complement(3429109..3429612) /gene="rpsE" /locus_tag="SF3335" /db_xref="GeneID:1026986" CDS complement(3429109..3429612) /gene="rpsE" /locus_tag="SF3335" /note="Code: J; COG: COG0098" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S5" /protein_id="NP_709091.1" /db_xref="GeneID:1026986" /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS VEEILGK" misc_feature complement(3429115..3429612) /gene="rpsE" /locus_tag="SF3335" /note="30S ribosomal protein S5; Validated; Region: rpsE; PRK00550" /db_xref="CDD:234790" gene complement(3429627..3429980) /gene="rplR" /locus_tag="SF3336" /db_xref="GeneID:1027032" CDS complement(3429627..3429980) /gene="rplR" /locus_tag="SF3336" /note="Code: J; COG: COG0256" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L18" /protein_id="NP_709092.1" /db_xref="GeneID:1027032" /translation="MDKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNG SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR VQALADAAREAGLQF" misc_feature complement(3429630..3429923) /gene="rplR" /locus_tag="SF3336" /note="Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]; Region: RplR; COG0256" /db_xref="CDD:440026" gene complement(3429990..3430523) /gene="rplF" /locus_tag="SF3337" /db_xref="GeneID:1026981" CDS complement(3429990..3430523) /gene="rplF" /locus_tag="SF3337" /note="Code: J; COG: COG0097" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L6" /protein_id="NP_709093.1" /db_xref="GeneID:1026981" /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK HADNTLTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV INLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK GVRYADEVVRTKEAKKK" misc_feature complement(3429993..3430520) /gene="rplF" /locus_tag="SF3337" /note="Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]; Region: RplF; COG0097" /db_xref="CDD:439867" gene complement(3430536..3430928) /gene="rpsH" /locus_tag="SF3338" /db_xref="GeneID:1026989" CDS complement(3430536..3430928) /gene="rpsH" /locus_tag="SF3338" /note="Code: J; COG: COG0096" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S8" /protein_id="NP_709094.1" /db_xref="GeneID:1026989" /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA VVSTSKGVMTDRAARQAGLGGEIICYVA" misc_feature complement(3430539..3430925) /gene="rpsH" /locus_tag="SF3338" /note="30S ribosomal protein S8; Validated; Region: rpsH; PRK00136" /db_xref="CDD:234658" gene complement(3430962..3431267) /gene="rpsN" /locus_tag="SF3339" /db_xref="GeneID:1027019" CDS complement(3430962..3431267) /gene="rpsN" /locus_tag="SF3339" /note="Code: J; COG: COG0199" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S14" /protein_id="NP_709095.1" /db_xref="GeneID:1027019" /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNASDEDRWNA VLKLQTLPRDSSPSRQRNRCRQTGRPHGFLRKFGLSRIKVREAAMRGEIPGLKKASW" misc_feature complement(3430965..3431267) /gene="rpsN" /locus_tag="SF3339" /note="30S ribosomal protein S14; Reviewed; Region: rpsN; PRK08881" /db_xref="CDD:181574" gene complement(3431282..3431821) /gene="rplE" /locus_tag="SF3340" /db_xref="GeneID:1027030" CDS complement(3431282..3431821) /gene="rplE" /locus_tag="SF3340" /note="Code: J; COG: COG0094" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L5" /protein_id="NP_709096.1" /db_xref="GeneID:1027030" /translation="MAKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAI ADKKLLDNAAADLAAFSRQKPLSTKARKFVACFKIRQGYPIGCKVTLRGERMWEFFER LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA KSDEEGRALLAAFDFPFRK" misc_feature complement(3431285..3431821) /gene="rplE" /locus_tag="SF3340" /note="Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]; Region: RplE; COG0094" /db_xref="CDD:439864" gene complement(3431836..3432150) /gene="rplX" /locus_tag="SF3341" /db_xref="GeneID:1023963" CDS complement(3431836..3432150) /gene="rplX" /locus_tag="SF3341" /note="Code: J; COG: COG0198" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L24" /protein_id="NP_709097.1" /db_xref="GeneID:1023963" /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIIEGINLVKK HQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET IK" misc_feature complement(3431842..3432150) /gene="rplX" /locus_tag="SF3341" /note="Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]; Region: RplX; COG0198" /db_xref="CDD:439968" gene complement(3432161..3432532) /gene="rplN" /locus_tag="SF3342" /db_xref="GeneID:1027016" CDS complement(3432161..3432532) /gene="rplN" /locus_tag="SF3342" /note="Code: J; COG: COG0093" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L14" /protein_id="NP_709098.1" /db_xref="GeneID:1027016" /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVLLNNNSEQPIGTRIFGP VTRELRSEKFMKIISLAPEVL" misc_feature complement(3432164..3432532) /gene="rplN" /locus_tag="SF3342" /note="Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]; Region: RplN; COG0093" /db_xref="CDD:439863" gene complement(3432697..3432951) /gene="rpsQ" /locus_tag="SF3343" /db_xref="GeneID:1026995" CDS complement(3432697..3432951) /gene="rpsQ" /locus_tag="SF3343" /note="Code: J; COG: COG0186" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S17" /protein_id="NP_709099.1" /db_xref="GeneID:1026995" /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKL HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL" misc_feature complement(3432703..3432942) /gene="rpsQ" /locus_tag="SF3343" /note="Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Region: RpsQ; COG0186" /db_xref="CDD:439956" gene complement(3432951..3433142) /gene="rpmC" /locus_tag="SF3344" /db_xref="GeneID:1026974" CDS complement(3432951..3433142) /gene="rpmC" /locus_tag="SF3344" /note="Code: J; COG: COG0255" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L29" /protein_id="NP_709100.1" /db_xref="GeneID:1026974" /translation="MKAKELREKSIEELNTELLNLLREQFNLRMQAASGQLQQSHLLK QVRRDVARVKTLLNEKAGA" misc_feature complement(3432954..3433142) /gene="rpmC" /locus_tag="SF3344" /note="Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]; Region: RpmC; COG0255" /db_xref="CDD:440025" gene complement(3433142..3433552) /gene="rplP" /locus_tag="SF3345" /db_xref="GeneID:1026982" CDS complement(3433142..3433552) /gene="rplP" /locus_tag="SF3345" /note="Code: J; COG: COG0197" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L16" /protein_id="NP_709101.1" /db_xref="GeneID:1026982" /translation="MLQPKRTKFRKMHKGRNRGLAQGTDVSFGSFGLKAVGRGRLTAR QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL YEMGGVPEELAREAFKLAAAKLPIKTTFVTKTVM" misc_feature complement(3433148..3433552) /gene="rplP" /locus_tag="SF3345" /note="Ribosomal protein L16/L10AE [Translation, ribosomal structure and biogenesis]; Region: RplP; COG0197" /db_xref="CDD:439967" gene complement(3433565..3434266) /gene="rpsC" /locus_tag="SF3346" /db_xref="GeneID:1026985" CDS complement(3433565..3434266) /gene="rpsC" /locus_tag="SF3346" /note="Code: J; COG: COG0092" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S3" /protein_id="NP_709102.2" /db_xref="GeneID:1026985" /translation="MGQKVHRNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE KPAAQPKKQQRKGRK" misc_feature complement(3433589..3434266) /gene="rpsC" /locus_tag="SF3346" /note="Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]; Region: RpsC; COG0092" /db_xref="CDD:439862" gene complement(3434284..3434616) /gene="rplV" /locus_tag="SF3347" /db_xref="GeneID:1026990" CDS complement(3434284..3434616) /gene="rplV" /locus_tag="SF3347" /note="Code: J; COG: COG0091" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L22" /protein_id="NP_709103.1" /db_xref="GeneID:1026990" /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA VQVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH ITVVVSDR" misc_feature complement(3434287..3434616) /gene="rplV" /locus_tag="SF3347" /note="Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]; Region: RplV; COG0091" /db_xref="CDD:439861" gene complement(3434631..3434909) /gene="rpsS" /locus_tag="SF3348" /db_xref="GeneID:1027008" CDS complement(3434631..3434909) /gene="rpsS" /locus_tag="SF3348" /note="Code: J; COG: COG0185" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S19" /protein_id="NP_709104.1" /db_xref="GeneID:1027008" /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM IGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHAADKKAKKK" misc_feature complement(3434661..3434909) /gene="rpsS" /locus_tag="SF3348" /note="30S ribosomal protein S19; Reviewed; Region: rpsS; PRK00357" /db_xref="CDD:178985" gene complement(3434926..3435747) /gene="rplB" /locus_tag="SF3349" /db_xref="GeneID:1027010" CDS complement(3434926..3435747) /gene="rplB" /locus_tag="SF3349" /note="Code: J; COG: COG0090" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L2" /protein_id="NP_709105.1" /db_xref="GeneID:1027010" /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRN NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR YILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK" misc_feature complement(3434929..3435747) /gene="rplB" /locus_tag="SF3349" /note="Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]; Region: RplB; COG0090" /db_xref="CDD:439860" gene complement(3435765..3436067) /gene="rplW" /locus_tag="SF3350" /db_xref="GeneID:1026994" CDS complement(3435765..3436067) /gene="rplW" /locus_tag="SF3350" /note="Code: J; COG: COG0089" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L23" /protein_id="NP_709106.1" /db_xref="GeneID:1026994" /translation="MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIK AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE" misc_feature complement(3435771..3436046) /gene="rplW" /locus_tag="SF3350" /note="50S ribosomal protein L23; Reviewed; Region: rplW; PRK05738" /db_xref="CDD:235586" gene complement(3436064..3436669) /gene="rplD" /locus_tag="SF3351" /db_xref="GeneID:1027011" CDS complement(3436064..3436669) /gene="rplD" /locus_tag="SF3351" /note="Code: J; COG: COG0088" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L4" /protein_id="NP_709107.1" /db_xref="GeneID:1027011" /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA ARNLQKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA" misc_feature complement(3436067..3436669) /gene="rplD" /locus_tag="SF3351" /note="Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]; Region: RplD; COG0088" /db_xref="CDD:439858" gene complement(3436680..3437309) /gene="rplC" /locus_tag="SF3352" /db_xref="GeneID:1027004" CDS complement(3436680..3437309) /gene="rplC" /locus_tag="SF3352" /note="Code: J; COG: COG0087" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L3" /protein_id="NP_709108.1" /db_xref="GeneID:1027004" /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG YRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFA DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK MAGQMGNERVTVQSLDVVRVDAERNLLLVKGAVPGATGSDLIVKPAVKA" misc_feature complement(3436683..3437309) /gene="rplC" /locus_tag="SF3352" /note="Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]; Region: RplC; COG0087" /db_xref="CDD:439857" gene complement(3437342..3437653) /gene="rpsJ" /locus_tag="SF3353" /db_xref="GeneID:1027009" CDS complement(3437342..3437653) /gene="rpsJ" /locus_tag="SF3353" /note="Code: J; COG: COG0051" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S10" /protein_id="NP_709109.1" /db_xref="GeneID:1027009" /translation="MQNQRIRIRLKAFDHRLIDQATAEIVETAKRTGAQVRGPIPLPT RKERFTVLISPHVNKDARDQYEIRTHLRLVDIVEPTEKTVDALMRLDLAAGVDVQISL G" misc_feature complement(3437348..3437653) /gene="rpsJ" /locus_tag="SF3353" /note="30S ribosomal protein S10; Reviewed; Region: rpsJ; PRK00596" /db_xref="CDD:179076" gene 3438032..3438499 /locus_tag="SF3354" /pseudogene="unknown" /db_xref="GeneID:1026988" gene complement(3438496..3438972) /gene="bfr" /locus_tag="SF3355" /db_xref="GeneID:1026957" CDS complement(3438496..3438972) /gene="bfr" /locus_tag="SF3355" /note="Code: P; COG: COG2193" /codon_start=1 /transl_table=11 /product="bacterioferritin" /protein_id="NP_709111.1" /db_xref="GeneID:1026957" /translation="MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLMRLNDVE YHESIDEMKHADKYIERILFLEGIPNLQDLGKLGIGEDVEEMLQSDLRLELEGAKDLR EAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIGKIGLQNYLQSQIKVKD" misc_feature complement(3438499..3438972) /gene="bfr" /locus_tag="SF3355" /note="bacterioferritin; Provisional; Region: PRK10635" /db_xref="CDD:182604" misc_feature complement(order(3438805..3438807,3438817..3438819, 3438838..3438840,3438883..3438885,3438904..3438906, 3438928..3438930)) /gene="bfr" /locus_tag="SF3355" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:153099" misc_feature complement(order(3438592..3438597,3438670..3438672, 3438682..3438684,3438691..3438696,3438811..3438813, 3438820..3438822,3438898..3438900,3438910..3438915, 3438919..3438924)) /gene="bfr" /locus_tag="SF3355" /note="ferroxidase pore [active]" /db_xref="CDD:153099" misc_feature complement(order(3438583..3438585,3438592..3438594, 3438670..3438672,3438691..3438693,3438811..3438813, 3438820..3438822,3438898..3438900,3438919..3438921)) /gene="bfr" /locus_tag="SF3355" /note="ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153099" gene complement(3439045..3439239) /gene="yheA" /locus_tag="SF3356" /db_xref="GeneID:1026997" CDS complement(3439045..3439239) /gene="yheA" /locus_tag="SF3356" /note="Code: P; COG: COG2906" /codon_start=1 /transl_table=11 /product="bacterioferritin-associated ferredoxin" /protein_id="NP_709112.1" /db_xref="GeneID:1026997" /translation="MYVCLCNGVSDKKIRQAVRQFHPQSFQQLRKFIPVGNQCGKCIR AAREVMQDELMQMPEFKEIA" misc_feature complement(3439048..3439239) /gene="yheA" /locus_tag="SF3356" /note="bacterioferritin-associated ferredoxin; Provisional; Region: PRK10509" /db_xref="CDD:182506" gene complement(3439422..3440606) /gene="tuf" /locus_tag="SF3357" /db_xref="GeneID:1027018" CDS complement(3439422..3440606) /gene="tuf" /locus_tag="SF3357" /note="Code: JE; COG: COG0050" /codon_start=1 /transl_table=11 /product="elongation factor Tu" /protein_id="NP_709113.2" /db_xref="GeneID:1027018" /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDV FSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVG VLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFR TTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKV LG" misc_feature complement(3439428..3440606) /gene="tuf" /locus_tag="SF3357" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:234596" gene complement(3440677..3442791) /gene="fusA" /locus_tag="SF3358" /db_xref="GeneID:1027012" CDS complement(3440677..3442791) /gene="fusA" /locus_tag="SF3358" /experiment="mass spectrum evidence" /note="Code: J; COG: COG0480" /codon_start=1 /transl_table=11 /product="GTP-binding protein chain elongation factor EF-G" /protein_id="NP_709114.2" /db_xref="GeneID:1027012" /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRVGANFLKVVNQIKT RLGANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEW HQNLIESAAEASEELMEKYLGGEELTEAEIKGALRQRVLNNEIILVTCGSAFKNKGVQ AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT FFRVYSGVVNSGDTVLNSVKAARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT TGDTLCDPDAPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQ SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPL AGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM EFLKYDEAPSNVAQAVIEARGK" misc_feature complement(3440680..3442791) /gene="fusA" /locus_tag="SF3358" /note="Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]; Region: FusA; COG0480" /db_xref="CDD:440248" gene complement(3442888..3443358) /gene="rpsG" /locus_tag="SF3359" /db_xref="GeneID:1026996" CDS complement(3442888..3443358) /gene="rpsG" /locus_tag="SF3359" /note="Code: J; COG: COG0049" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S7" /protein_id="NP_709115.1" /db_xref="GeneID:1026996" /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR WIVEAARKRGDKSMALRLANELSDAAENKGTAVKKREDVHRMAEANKAFAHYRW" misc_feature complement(3442891..3443358) /gene="rpsG" /locus_tag="SF3359" /note="30S ribosomal protein S7; Validated; Region: PRK05302" /db_xref="CDD:235398" misc_feature complement(order(3443002..3443004,3443011..3443016, 3443032..3443034,3443053..3443055,3443065..3443067, 3443074..3443079,3443104..3443106,3443116..3443118, 3443131..3443133,3443233..3443238,3443245..3443259, 3443269..3443277)) /gene="rpsG" /locus_tag="SF3359" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:271248" misc_feature complement(order(3443227..3443229,3443236..3443241, 3443248..3443250)) /gene="rpsG" /locus_tag="SF3359" /note="S9 interface [polypeptide binding]; other site" /db_xref="CDD:271248" misc_feature complement(3442912..3442914) /gene="rpsG" /locus_tag="SF3359" /note="S11 interface [polypeptide binding]; other site" /db_xref="CDD:271248" gene complement(3443455..3443829) /gene="rpsL" /locus_tag="SF3360" /db_xref="GeneID:1027017" CDS complement(3443455..3443829) /gene="rpsL" /locus_tag="SF3360" /note="Code: J; COG: COG0048" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S12" /protein_id="NP_709116.2" /db_xref="GeneID:1027017" /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL DCSGVKDRKQARSKYGVKRPKA" misc_feature complement(3443458..3443829) /gene="rpsL" /locus_tag="SF3360" /note="Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]; Region: RpsL; COG0048" /db_xref="CDD:439818" gene complement(3443955..3444242) /gene="yheL" /locus_tag="SF3361" /db_xref="GeneID:1027572" CDS complement(3443955..3444242) /gene="yheL" /locus_tag="SF3361" /note="Code: P; COG: COG2168" /codon_start=1 /transl_table=11 /product="sulfur transfer complex subunit TusB" /protein_id="NP_709117.1" /db_xref="GeneID:1027572" /translation="MLHTLHRSPWLTDFAALLRLLSEGDELLLLQDGVTAAVDGNRYL ESLRNAPIKVYALNEDLIARGLTGQILNDIIPIDYTDFVRLTVKHSSQMAW" misc_feature complement(3443958..3444242) /gene="yheL" /locus_tag="SF3361" /note="sulfurtransferase complex subunit TusB; Region: PRK13510" /db_xref="CDD:184101" gene complement(3444250..3444609) /gene="yheM" /locus_tag="SF3362" /db_xref="GeneID:1026547" CDS complement(3444250..3444609) /gene="yheM" /locus_tag="SF3362" /note="Code: P; COG: COG2923" /codon_start=1 /transl_table=11 /product="sulfur relay protein TusC" /protein_id="NP_709118.1" /db_xref="GeneID:1026547" /translation="MKRIAFVFSTAPHGTAAGREGLDALLATSALTDDLAVFFIADGV FQLLSGQKPDAVLARDYIATFKLLSLYDIEQCWVCAASLRERGLDPQTPFVVEATPLE ADALRRELANYDVILRF" misc_feature complement(3444253..3444609) /gene="yheM" /locus_tag="SF3362" /note="sulfurtransferase complex subunit TusC; Region: PRK00211" /db_xref="CDD:178930" gene complement(3444609..3444995) /gene="yheN" /locus_tag="SF3363" /db_xref="GeneID:1026960" CDS complement(3444609..3444995) /gene="yheN" /locus_tag="SF3363" /note="Code: P; COG: COG1553" /codon_start=1 /transl_table=11 /product="sulfur transfer complex subunit TusD" /protein_id="NP_709119.1" /db_xref="GeneID:1026960" /translation="MRFAIVVTGPAYGTQQASSAFQFAQALIAEGHKLSSVFFYREGV YNANQLTSPASDEFDLVRGWQQLNAQHGVALNICVAAALRRGIVDETEAGRLGLASSN LQPGFTLSGLGALAEASLTCDRVVQF" misc_feature complement(3444612..3444995) /gene="yheN" /locus_tag="SF3363" /note="sulfurtransferase complex subunit TusD; Region: PRK00207" /db_xref="CDD:178928" gene complement(3444995..3445717) /gene="yheO" /locus_tag="SF3364" /db_xref="GeneID:1026810" CDS complement(3444995..3445717) /gene="yheO" /locus_tag="SF3364" /note="Code: S; COG: COG2964" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709120.2" /db_xref="GeneID:1026810" /translation="MSRSLLTNETSELDLLDQRPFDQTDFDILKSYEAVVDGLAMLIG SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMSTFVPPETPDVGSSVNFA SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI SKHTVYLYIRQFKSGDFQGQDK" misc_feature complement(3445022..3445651) /gene="yheO" /locus_tag="SF3364" /note="Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains [Transcription]; Region: YheO; COG2964" /db_xref="CDD:442204" gene complement(3445884..3446696) /gene="fkpA" /locus_tag="SF3365" /db_xref="GeneID:1026961" CDS complement(3445884..3446696) /gene="fkpA" /locus_tag="SF3365" /note="Code: O; COG: COG0545" /codon_start=1 /transl_table=11 /product="FKBP-type peptidylprolyl isomerase" /protein_id="NP_709121.1" /db_xref="GeneID:1026961" /translation="MKSLFKVTLLATTMAVALHAPITFAAEAAKPATTADSKASFKND DQKSAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL QAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEKGVKTSSTGLVYQVVEAGKGEA PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV IPPELAYGKAGVPGIPPNSTLVFDVELLDVKPAPKADAKPEADAKAADSAKK" misc_feature complement(3445920..3446696) /gene="fkpA" /locus_tag="SF3365" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK10902" /db_xref="CDD:236791" gene 3446917..3447135 /gene="slyX" /locus_tag="SF3366" /db_xref="GeneID:1026546" CDS 3446917..3447135 /gene="slyX" /locus_tag="SF3366" /note="Code: S; COG: COG2900" /codon_start=1 /transl_table=11 /product="phi X174 lysis protein" /protein_id="NP_709122.1" /db_xref="GeneID:1026546" /translation="MQDLSLEARLAELESRLAFQEITIEELNVTVAAHEMEMAKLRDH LRLLTEKLKASQPSNIASQAEETPPPHY" misc_feature 3446917..3447132 /gene="slyX" /locus_tag="SF3366" /note="phi X174 lysis protein; Provisional; Region: PRK02793" /db_xref="CDD:179472" gene complement(3447184..3447774) /gene="slyD" /locus_tag="SF3367" /db_xref="GeneID:1025309" CDS complement(3447184..3447774) /gene="slyD" /locus_tag="SF3367" /note="Code: O; COG: COG1047" /codon_start=1 /transl_table=11 /product="FKBP-type peptidylprolyl isomerase" /protein_id="NP_709123.1" /db_xref="GeneID:1025309" /translation="MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG LETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ GPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH DHDHDGCCGGHGHDHGHEHGGEGCCGGKGNGGCGCH" misc_feature complement(3447187..3447774) /gene="slyD" /locus_tag="SF3367" /note="peptidylprolyl isomerase; Region: PRK10737" /db_xref="CDD:236748" gene complement(3447869..3448069) /gene="yheV" /locus_tag="SF3368" /db_xref="GeneID:1026866" CDS complement(3447869..3448069) /gene="yheV" /locus_tag="SF3368" /note="Code: R; COG: COG3529" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709124.1" /db_xref="GeneID:1026866" /translation="MAIRKRFIAGAKCPACQAQDSMAMWRENNIDIVECVKCGHQMRE ADKEARDHVHKDEQVIGIFHPD" misc_feature complement(3447872..3448069) /gene="yheV" /locus_tag="SF3368" /note="Predicted nucleic-acid-binding protein, contains Zn-ribbon domain [General function prediction only]; Region: COG3529" /db_xref="CDD:442751" gene complement(3448079..3449816) /locus_tag="SF3369" /pseudogene="unknown" /db_xref="GeneID:1027007" gene complement(3449816..3450367) /gene="yheR" /locus_tag="SF3370" /db_xref="GeneID:1026554" CDS complement(3449816..3450367) /gene="yheR" /locus_tag="SF3370" /note="Code: R; COG: COG2249" /codon_start=1 /transl_table=11 /product="glutathione-regulated potassium-efflux system ancillary protein KefG" /protein_id="NP_709126.2" /db_xref="GeneID:1026554" /translation="MSQPAKVLLLYAHPESQDSVANRVLLKPATQLSNVTVHDLYAHY PDFFIDIPREQALLREHEVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLAG KYWRNVITTGEPESAYRYDALNRYPMSDVLRPFELAAGMCRMHWLSPIIIYWARRQSA KELASHARAYGDWLANPLSPGGR" misc_feature complement(3449819..3450367) /gene="yheR" /locus_tag="SF3370" /note="glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional; Region: PRK04930" /db_xref="CDD:179895" gene 3450498..3452411 /gene="yheS" /locus_tag="SF3371" /db_xref="GeneID:1026869" CDS 3450498..3452411 /gene="yheS" /locus_tag="SF3371" /note="Code: R; COG: COG0488" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_709127.1" /db_xref="GeneID:1026869" /translation="MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLL ALLKNEISADGGSYTFPGSWQLAWVNQETPALPQAALEYVIDGDREYRQLEAQLHDAN ERNDGHAIATIHSKLDAIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIH IEQQSMFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQA QSRIKMLERMELIAPAHVDNPFRFSFRAPESLPNPLLKMEKVSAGYGDRIILDSIKLN LVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEYLRADE SPIQHLARLAPQELEQKLRDYLGGFGFLGDKVTEETRRFSGGEKARLVLALIVWQRPN LLLLDEPTNHLDLDMRQALTEALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPF DGDLEDYQQWLSDVQKQENQTDEAPKENANSAQARKDQKRREAELRAQTQPLRKEIAR LEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQ EQLEQMLLEGQSN" misc_feature 3450498..3452390 /gene="yheS" /locus_tag="SF3371" /note="putative ABC transporter ATP-binding protein; Provisional; Region: PRK10636" /db_xref="CDD:236729" gene 3452411..3453433 /gene="yheT" /locus_tag="SF3372" /db_xref="GeneID:1026977" CDS 3452411..3453433 /gene="yheT" /locus_tag="SF3372" /note="Code: R; COG: COG0429" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="NP_709128.1" /db_xref="GeneID:1026977" /translation="MAQITTTDANEFSSSAEFTPMRGFSNCHLQTMLPRLFRRQVKFT PYWQRLELPDGDFVDLAWSEDPAQAKHKPRLVVFHGLEGSLNSPYAHGLVEAAQKRGW LGVVMHFRGCSGEPNRMHRIYHSGETEDASWFLRWLQREFGHAPTAAVGYSLGGNMLA CLLAKEGNDLPVDAAVIVSAPFMLEACSYHMEKGFSRVYQRYLLNLLKANAARKLAAY PGTLPINLAQLKSVRRIREFDDLITARIHGYADAIDYYRQCSAMPMLNRIAKPTLIIH AKDDPFMDHQVIPKPESLPSQVEYQLTEHGGHVGFIGGTLLHPQMWLESRIPDWLTTY LEAKSC" misc_feature 3452453..3453424 /gene="yheT" /locus_tag="SF3372" /note="putative hydrolase; Provisional; Region: PRK10985" /db_xref="CDD:182883" gene 3453427..3453645 /gene="yheU" /locus_tag="SF3373" /db_xref="GeneID:1026969" CDS 3453427..3453645 /gene="yheU" /locus_tag="SF3373" /note="Code: S; COG: COG3089" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709129.1" /db_xref="GeneID:1026969" /translation="MLIPWQDLSPETLENLIESFVLREGTDYGEHERTLEQKVADVKR QLQCGEAVLVWSELHETVNIMPRSQFRE" misc_feature 3453427..3453642 /gene="yheU" /locus_tag="SF3373" /note="hypothetical protein; Provisional; Region: PRK04966" /db_xref="CDD:179903" gene 3453699..3454568 /gene="prkB" /locus_tag="SF3374" /db_xref="GeneID:1026963" CDS 3453699..3454568 /gene="prkB" /locus_tag="SF3374" /codon_start=1 /transl_table=11 /product="phosphoribulokinase" /protein_id="NP_709130.1" /db_xref="GeneID:1026963" /translation="MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSF HRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEYGQSGKGKSRKYLHTYD EAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLE WIQKLIRDTSERGHSREAVMDSVVRSMEDYINYITPQFSRTHLNFQRVPTVDTSNPFA AKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIML PLVQRLMEGKKIE" misc_feature 3453699..3454562 /gene="prkB" /locus_tag="SF3374" /note="phosphoribulokinase; Provisional; Region: PRK15453" /db_xref="CDD:237970" misc_feature order(3453732..3453734,3453747..3453758) /gene="prkB" /locus_tag="SF3374" /note="active site" /db_xref="CDD:238987" gene complement(3454623..3455027) /gene="yhfA" /locus_tag="SF3375" /db_xref="GeneID:1027005" CDS complement(3454623..3455027) /gene="yhfA" /locus_tag="SF3375" /note="Code: S; COG: COG1765" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709131.1" /db_xref="GeneID:1027005" /translation="MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAA GGCSAIDVVSILQKGRQDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVA RAVDLSAEKYCSVALMLEKAVNITHSYEVVAA" misc_feature complement(3454626..3455027) /gene="yhfA" /locus_tag="SF3375" /note="OsmC family protein; Region: PRK10738" /db_xref="CDD:182688" gene 3455329..3455961 /gene="crp" /locus_tag="SF3376" /db_xref="GeneID:1026956" CDS 3455329..3455961 /gene="crp" /locus_tag="SF3376" /note="Code: T; COG: COG0664" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional dual regulator Crp" /protein_id="NP_709132.1" /db_xref="GeneID:1026956" /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK FRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR" misc_feature 3455329..3455958 /gene="crp" /locus_tag="SF3376" /note="cAMP-activated global transcriptional regulator CRP; Region: PRK11753" /db_xref="CDD:236969" gene 3456012..3458102 /gene="yhfK" /locus_tag="SF3377" /db_xref="GeneID:1026987" CDS 3456012..3458102 /gene="yhfK" /locus_tag="SF3377" /note="Code: S; COG: COG1289" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709133.2" /db_xref="GeneID:1026987" /translation="MWRRLIYHPDINYALRQTLVLCLPVAVGLMLGELRFGLLFSLVP ACCNIAGLDTPHKRFFKHLIIGASLFATCSLLTQLLLVKDVPLPFLLTGLTLVLGVTA ELGPLHAKLLPASLLAAIFTLSLAGYMPVWEPLLIYALGTLWYGLFNWFWFWIWREQP LRESLSLLYRELADYCEAKYSLLTQHTDPEKALPPLLVRQQKAVDLITQCYQQMHMLS AQNNTDYKRMLRIFQEALDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARL RVLADDILYHRLPTRFTMEKQIGALEKIARQHPDNPVGQFCYWHFSRIARVLRTQKPL YARDLLADKQRRMPLLPALKSYLSLKSPALRNAGRLSVMLSVASLMGTVLHLPKSYWI LMTVLLVTQNGYGATRLRIVNRSVGTVVGLIIAGVALHFKIPESYTLTLMLITTLASY LILRKNYGWATVGFTITAVYTLQLLWLNGEQYILPRLIDTIIGCLIAFGGTVWLWPQW QSGLLRKNAHDALEAYQEAIRLILSEDPQPTPLAWQRMRVNQAHNTLYNSLNQAMQEP AFNSHYLADMKLWVTHSQFIVEHINAMTTLAREHRALPPELAQEYLQSCEIAIQRCQQ RLEYDEPGSSGDANIMDAPEMQPHEGAAGTLEQHLQRVIGHLNTMHTISSMAWRQRPH HGIWLSRKLRDSKA" misc_feature 3456045..3458039 /gene="yhfK" /locus_tag="SF3377" /note="integral membrane protein, YccS/YhfK family; Region: YCCS_YHJK; TIGR01667" /db_xref="CDD:130728" gene complement(3458169..3459389) /gene="argD" /locus_tag="SF3378" /db_xref="GeneID:1026964" CDS complement(3458169..3459389) /gene="argD" /locus_tag="SF3378" /note="Code: E; COG: COG0160" /codon_start=1 /transl_table=11 /product="acetylornithine aminotransferase" /protein_id="NP_709134.1" /db_xref="GeneID:1026964" /translation="MAIEQTAITRATFDEVILPIYAPAEFIPVKGQGSRIWDQQGKEY VDFAGGIAVTALGHCHPALVNALKTQGETLWHISNVFTNEPALRLGRKLIEATFAERV VFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG FGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVTAATPEFLQGLRELCDQ HQALLVFDEVQCGMGRTGDLFAYRYYGVTPDILTSAKALGGGFPISAMLTTAEIASAF HPGSHGSTYGGNPLACAVAGAAFDIINTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSD IRGMGLLIGAELKPHYKGRARDFLYAGAEVGVMVLNAGPDVMRLAPSLVVEDADIDEG MQRFAHAVAKVVGA" misc_feature complement(3458175..3459380) /gene="argD" /locus_tag="SF3378" /note="acetylornithine/succinyldiaminopimelate transaminase; Region: argD; PRK05093" /db_xref="CDD:179933" misc_feature complement(order(3458625..3458627,3458703..3458708, 3458712..3458714,3458811..3458813,3458958..3458960, 3458964..3458969,3459063..3459071)) /gene="argD" /locus_tag="SF3378" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature complement(order(3458625..3458627,3458703..3458705, 3458712..3458714,3458811..3458813,3458964..3458969, 3459063..3459068)) /gene="argD" /locus_tag="SF3378" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature complement(3458625..3458627) /gene="argD" /locus_tag="SF3378" /note="catalytic residue [active]" /db_xref="CDD:99735" gene complement(3459475..3460038) /gene="pabA" /locus_tag="SF3379" /db_xref="GeneID:1026962" CDS complement(3459475..3460038) /gene="pabA" /locus_tag="SF3379" /note="Code: EH; COG: COG0512" /codon_start=1 /transl_table=11 /product="para-aminobenzoate synthase component II" /protein_id="NP_709135.1" /db_xref="GeneID:1026962" /translation="MILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDALKP QKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAKVMHG KTSPITHSGEGVFRGLANPLTVTRYHSLVVEPDSLPACFDVTAWSETREIMGIRHRQW DLEGVQFHPESILSEQGHQLLANFLHL" misc_feature complement(3459481..3460038) /gene="pabA" /locus_tag="SF3379" /note="aminodeoxychorismate synthase component 2; Region: PRK08007" /db_xref="CDD:181194" misc_feature complement(order(3459649..3459660,3459790..3459792, 3459799..3459804,3459877..3459879,3459883..3459888)) /gene="pabA" /locus_tag="SF3379" /note="glutamine binding [chemical binding]; other site" /db_xref="CDD:153214" misc_feature complement(order(3459529..3459531,3459535..3459537, 3459802..3459804)) /gene="pabA" /locus_tag="SF3379" /note="catalytic triad [active]" /db_xref="CDD:153214" gene complement(3460070..3460672) /gene="fic" /locus_tag="SF3380" /db_xref="GeneID:1026980" CDS complement(3460070..3460672) /gene="fic" /locus_tag="SF3380" /note="Code: D; COG: COG2184" /codon_start=1 /transl_table=11 /product="cell filamentation protein Fic" /protein_id="NP_709136.1" /db_xref="GeneID:1026980" /translation="MSDKFGEGRDLYLYPGLDIMRNRLNIRQQQRLEQAAYEMTALRA ATIELGPLVRGLPHLRTIHRQLYQDIFDWAGQLREVDIYQGDTPFCHFAYIEKEGNAL MQDLEEEGYLVGLEKAKFVERLAHYYCEINVLHPFRVGSGLAQRIFFEQLAIHAGYQL SWQGIEKEAWNQANQSGAMGDLTALQMIFSKVVSEAGESE" misc_feature complement(3460073..3460672) /gene="fic" /locus_tag="SF3380" /note="putative adenosine monophosphate-protein transferase Fic; Region: PRK10347" /db_xref="CDD:182396" gene complement(3460662..3460829) /gene="yhfG" /locus_tag="SF3381" /db_xref="GeneID:1026970" CDS complement(3460662..3460829) /gene="yhfG" /locus_tag="SF3381" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709137.1" /db_xref="GeneID:1026970" /translation="MKKLTDKQKSRLWELQRNRNFQASRRLEGVEMPLVTLTAAEALA RLEELRRHYER" misc_feature complement(3460665..3460829) /gene="yhfG" /locus_tag="SF3381" /note="hypothetical protein; Provisional; Region: PRK10204" /db_xref="CDD:182304" gene complement(3460934..3461515) /gene="ppiA" /locus_tag="SF3382" /db_xref="GeneID:1026971" CDS complement(3460934..3461515) /gene="ppiA" /locus_tag="SF3382" /note="Code: O; COG: COG0652" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase A" /protein_id="NP_709138.1" /db_xref="GeneID:1026971" /translation="MFKSTLAAMAAVFALSALSALSPAAMAAKGDPHVLLTTSAGNIE LELDKQKAPVSVQNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFTEQMQQKKPNPPIKN EADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMD VADKISQVPTHDVGPYQNVPSKPVVILSAKVLP" misc_feature complement(3460937..3461515) /gene="ppiA" /locus_tag="SF3382" /note="peptidylprolyl isomerase A; Region: PRK10903" /db_xref="CDD:182824" misc_feature complement(order(3461069..3461071,3461096..3461101, 3461123..3461125,3461147..3461164,3461267..3461269, 3461273..3461278,3461285..3461287,3461291..3461293)) /gene="ppiA" /locus_tag="SF3382" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238901" gene 3461786..3462967 /gene="yhfC" /locus_tag="SF3383" /db_xref="GeneID:1026976" CDS 3461786..3462967 /gene="yhfC" /locus_tag="SF3383" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709139.1" /db_xref="GeneID:1026976" /translation="MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFNLPVSS MSNTFTFLNAGILISIFLNAWLMEIVPLKTQLRFGFLLMVLAVAGLMFSHSLALFSTA MFILGVVSGITMSIGTFLITQMYEGRQRGSRLLFTDSFFSMAGMIFPMIAAFLLARSI EWYWVYACIGLVYVAIFILTFGCEFPALGKRAPKTDAPVEKEKWGIGVLFLSVAALCY ILGQLGFISWVPEYAKGLGMSLNDAGTLVSNFWMSYMVGMWAFSFILRFFDLQRILTV LAGLAAILMYVFNTGTPVHMAWSILALGFFSSAIYTTIITLGSQQTKVPSPKLVNFVL TCGTIGTMLTFVVTGTIVEHSGPQAALLTANGLYAVVFVMCFLLGFVSRHRQHNTLTS H" misc_feature 3461789..3462964 /gene="yhfC" /locus_tag="SF3383" /note="putative transporter; Provisional; Region: PRK03699" /db_xref="CDD:235151" gene 3463229..3465772 /gene="nirB" /locus_tag="SF3384" /db_xref="GeneID:1026541" CDS 3463229..3465772 /gene="nirB" /locus_tag="SF3384" /note="Code: C; COG: COG1251" /codon_start=1 /transl_table=11 /product="nitrite reductase subunit NirD" /protein_id="NP_709140.2" /db_xref="GeneID:1026541" /translation="MSKVRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAY DRVHLSSYFSHHTAEELSLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFY DKLIMATGSYPWIPPIKGSDTQDCFVYRTIEDLNAIESCARRSKRGAVVGGGLLGLEA AGALKNLGIETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGV EARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDI YAIGECASWNNRVFGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIG DAHGRTPGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE LPENPDSLILPAHSGSGKPSIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALK AETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTF EELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPEHTPLQDSNDNFLANIQKDGTYS VIPRSPGGEITPEGLMAVGRIAREFNLYTKITGSQRLAMFGAQKDDLPEIWRQLIEAG FETGHAYAKALRMAKTCVGSTWCRYGVGDSVGLGVELENRYKGIRTPHKMKFGVSGCT RECSEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADIDRETLIKYLDRFMMFY IRTADKLTRTAPWLENLEGGIDYLKAVIIDDKLGLNAHLEEEMARLREAVVCEWTETV NTPSAQTRFKHFINSDKRDPNVQMVPEREQHRPATPYERIPVTLVEDNA" misc_feature 3463229..3465769 /gene="nirB" /locus_tag="SF3384" /note="nitrite reductase subunit NirD; Provisional; Region: PRK14989" /db_xref="CDD:184951" gene 3465769..3466095 /gene="nirD" /locus_tag="SF3385" /db_xref="GeneID:1026973" CDS 3465769..3466095 /gene="nirD" /locus_tag="SF3385" /note="Code: PR; COG: COG2146" /codon_start=1 /transl_table=11 /product="nitrite reductase small subunit" /protein_id="NP_709141.1" /db_xref="GeneID:1026973" /translation="MSQWKDICKIDDILPETGVCALLGDKQVAIFRPYHSDQVFAISN IDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYEARVKDG VVQLRG" misc_feature 3465769..3466092 /gene="nirD" /locus_tag="SF3385" /note="nitrite reductase small subunit NirD; Region: nirD; PRK09511" /db_xref="CDD:181921" gene 3466221..3467027 /gene="nirC" /locus_tag="SF3386" /db_xref="GeneID:1026883" CDS 3466221..3467027 /gene="nirC" /locus_tag="SF3386" /note="Code: P; COG: COG2116" /codon_start=1 /transl_table=11 /product="nitrite reductase subunit NirC" /protein_id="NP_709142.3" /db_xref="GeneID:1026883" /translation="MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIIL IFTLGNLLDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTFGVKAGSISHGQMW AILPQTWLGNLVGSVFVAMLYSWGGGSLLPVDTSIVHSVALAKTTAPAMVLFFKGALC NWLVCLAIWMALRTEGAAKFIAIWWCLLAFIASGYEHSIANMTLFALSWFGNHSEAYT LAGIGHNLLWVTLGNTLSGAVFMGLGYWYATPKANRPVADKFNQTETAAG" misc_feature 3466221..3467024 /gene="nirC" /locus_tag="SF3386" /note="nitrite transporter NirC; Provisional; Region: PRK11562" /db_xref="CDD:183200" gene 3467046..3468419 /gene="cysG" /locus_tag="SF3387" /db_xref="GeneID:1026959" CDS 3467046..3468419 /gene="cysG" /locus_tag="SF3387" /codon_start=1 /transl_table=11 /product="siroheme synthase" /protein_id="NP_709143.1" /db_xref="GeneID:1026959" /translation="MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLDAGARLTVNALA FIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDTLNQRVSEAAEARRIFCNV VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPLHLGQVAKYAGQ LRGRVKQQFATMSERRRFWEKLFVNDRLAQSLANNDQKAITETTEQLINEPLDHRGEV VLVGAGPGDAGLLTLKGLQQIQQADVVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHC VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCNAGIPFSVVPGITAAS GCSAYSGIPLTHRDYAQSVRLITGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQQ KLIEHGMPGEMPVAIVENGTAVTQRVIDGTLTQLGELAQQMNSPSLIIIGRVVGLRDK LNWFSNH" misc_feature 3467046..3468416 /gene="cysG" /locus_tag="SF3387" /note="siroheme synthase CysG; Region: cysG; PRK10637" /db_xref="CDD:182606" gene 3468666..3468833 /gene="yhfL" /locus_tag="SF3388" /db_xref="GeneID:1026525" CDS 3468666..3468833 /gene="yhfL" /locus_tag="SF3388" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709144.1" /db_xref="GeneID:1026525" /translation="MNKFIKVALVGAVLATLTACTGHIENRDKNCSYDYLLHPAISIS KIIGGCGPTAQ" misc_feature 3468666..3468827 /gene="yhfL" /locus_tag="SF3388" /note="Protein of unknown function (DUF4223); Region: DUF4223; pfam13978" /db_xref="CDD:433620" gene 3469081..3470465 /gene="yhfM" /locus_tag="SF3389" /pseudo /db_xref="GeneID:1026998" misc_feature 3469081..3470465 /gene="yhfM" /locus_tag="SF3389" /note="Similar to Escherichia coli K12 amino acid/amine transport protein gi: 2367216 (463 aa). BLAST with identity of 99% in 462 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 3470486..3471508 /gene="yhfN" /locus_tag="SF3390" /db_xref="GeneID:1026968" CDS 3470486..3471508 /gene="yhfN" /locus_tag="SF3390" /note="Code: M; COG: COG2222" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709145.4" /db_xref="GeneID:1026968" /translation="MLDIDKSTVDFLVTENMVQEVEKVLSHDVPLVHAIVEEMVKRDI DRIYFVACGSPLNAAQTAKHLADRFSDLQVYAISGWEFCDNTPYRLDDRCAVIGVSDY GKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVV LEMITRLAPNAEIGKIKNDLKQLPNALGHLVRTWEEKGRQLGELASQWPMIYTVAAGP LRPLGYKEGIVTLMEFTWTHGCVIESGEFRHGPLEIVEPGVPFLFLLGNDESRHTTER AINFVKQRTDNVIVIDYAEISQGLHPWLAPFLMFVPMEWLCYYLSIYKDHNPDERRYY GGLVEY" misc_feature 3470486..3471505 /gene="yhfN" /locus_tag="SF3390" /note="fructoselysine 6-phosphate deglycase; Region: frlB; PRK11382" /db_xref="CDD:183111" gene 3471558..3472388 /gene="yhfP" /locus_tag="SF3391" /db_xref="GeneID:1026517" CDS 3471558..3472388 /gene="yhfP" /locus_tag="SF3391" /note="Code: G; COG: COG1082" /codon_start=1 /transl_table=11 /product="fructoselysine 3-epimerase" /protein_id="NP_709146.2" /db_xref="GeneID:1026517" /translation="MKTGMFTCGHQRLPIEHAFRDASELGYDGIEIWGGRPHAFAPDL KAGGIKQIKALAQTYQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIKLAIDMAKEM NAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGMDLILEPLTPYESNVVCN ANDVLHALALVPSPRLFSMVDICAPYVQAEPVMSYFDKLGDKLRHLHIVDSDGASDTH YIPGEGKMPLRELMRDIIDRGYEGYSTVELVTMYMNEPRLYARQALERFRALLPEDER " misc_feature 3471558..3472382 /gene="yhfP" /locus_tag="SF3391" /note="fructoselysine 3-epimerase; Provisional; Region: PRK09856" /db_xref="CDD:182116" misc_feature order(3471663..3471671,3471672..3471674,3471774..3471779, 3471783..3471785,3471792..3471794) /gene="yhfP" /locus_tag="SF3391" /note="DNA interaction; other site" /db_xref="CDD:237986" gene 3472385..3473170 /gene="yhfQ" /locus_tag="SF3392" /db_xref="GeneID:1026966" CDS 3472385..3473170 /gene="yhfQ" /locus_tag="SF3392" /note="Code: G; COG: COG0524" /codon_start=1 /transl_table=11 /product="fructoselysine 6-kinase" /protein_id="NP_709147.1" /db_xref="GeneID:1026966" /translation="MKTLATIGDNCVDIYPQLNKAFSGGNAVNVAVYCTRYGIQPGCI TWVGDDDYGTKLKQDLARMGVDISHVHTKHGVTAQTQVELHDNDRVFGDYTEGVMADF ALSEEDYAWLAQYDIVHAAIWGHAEDAFPQLHAAGKLTAFDFSDKWDSPLWQTLVPHL DFAFASAPQEDEALRLKMKAIVARGAGTVIVTLGENGSIAWDGAQFWRQAPEPVTVID TMGAGDSFIAGFLCGWSAGMTLPQAMAQGTACAAKTIQYHGAW" misc_feature 3472388..3473167 /gene="yhfQ" /locus_tag="SF3392" /note="fructoselysine 6-kinase; Provisional; Region: PRK09813" /db_xref="CDD:182090" misc_feature order(3472469..3472471,3473045..3473047,3473054..3473056) /gene="yhfQ" /locus_tag="SF3392" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238915" misc_feature order(3472880..3472882,3472958..3472960,3473039..3473041, 3473048..3473053,3473060..3473062,3473126..3473128, 3473135..3473137) /gene="yhfQ" /locus_tag="SF3392" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238915" gene 3473204..3474001 /gene="yhfR" /locus_tag="SF3393" /db_xref="GeneID:1026530" CDS 3473204..3474001 /gene="yhfR" /locus_tag="SF3393" /note="Code: K; COG: COG2188" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator FrlR" /protein_id="NP_709148.1" /db_xref="GeneID:1026530" /translation="MLLLAGKRPYNPSNSFFISGSIMSATDRYSHQLLYATVRQRLLD DIAQGVYQAGQQIPTENELCTQYNVSRITIRKAISDLVADGVLIRWQGKGTFVQSQKV ENALLTVSGFTDFGVSQGKSTKEKVIEQERVSAAPFCEKLNIPGNSEVFHLCRVMYLD KEPLFIDSSWIPLSRYPDFDEIYVEGSSTYQLFQERFDTRVVSDKKTIDIFAATRPQA KWLKCELGEPLFRISKIAFDQNDKPVHVSELFCRANRITLTIDNKRH" misc_feature 3473276..3473998 /gene="yhfR" /locus_tag="SF3393" /note="transcriptional regulator PhoB; Region: PRK11402" /db_xref="CDD:183118" gene complement(3474161..3475246) /gene="yhfS" /locus_tag="SF3394" /db_xref="GeneID:1024618" CDS complement(3474161..3475246) /gene="yhfS" /locus_tag="SF3394" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709149.1" /db_xref="GeneID:1024618" /translation="MKTFPLQSLTLAEAQQKQFALVDTICRHFPGSEFLAGGDLGLTP SLNQPRITQRVEQVLADAFHAQAAALVQGAGTGAIRAGLAALLKPGQRLLVHDAPVYP TTRVIIEQMGLTLITADFNDLSALKQVVDEQQPDAALVQHTRQQPQDSYVLADVLATL RAAGVPALTDDNYAVMKVARIGCECGANVSTFSCFKLFGPEGVGAVVGDADVISRIRA TLYSGGSQIQGSQALEVLRGLVFAPVMHAVQAGVSERLLALLNGGAVAEVKSAVIANA QSKVLIVEFHQLIAARVLEEAQKRGALPYPVGAESKYEIPPLFYRLSGTFRQANPQLE HCAIRINPNRSGEETVLRILRESIASI" misc_feature complement(<3474530..3475024) /gene="yhfS" /locus_tag="SF3394" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl18945" /db_xref="CDD:450240" misc_feature complement(order(3474659..3474661,3474668..3474670, 3474728..3474730,3474737..3474739,3474824..3474826, 3475010..3475012,3475019..3475024)) /gene="yhfS" /locus_tag="SF3394" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99738" misc_feature complement(3474659..3474661) /gene="yhfS" /locus_tag="SF3394" /note="catalytic residue [active]" /db_xref="CDD:99738" gene complement(3475258..3476562) /gene="yhfT" /locus_tag="SF3395" /db_xref="GeneID:1026871" CDS complement(3475258..3476562) /gene="yhfT" /locus_tag="SF3395" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_709150.1" /db_xref="GeneID:1026871" /translation="MDLYIQIIVVACLTGMTSLLAHRSAAVFHDGIHPILPQLIEGYM NRREAGSIAFGLSIGFVASVGISFTLKTGLLNAWLLFLPTDILGVLAINSLMAFGLGA IWGVLILTCLLPVNQLLTALPVDVLGSLGELSSPVVSAFALFPLVAIFYQFGWKQSLV AAVVVLMTRVVVVRYFPHLNPESIEIFIGMVMLLGIAITHDLRHRDENDIDASGLSVF EERTSRIIKNLPYIAIVGALIAAVASMKIFAGSEVSIFTLEKAYSAGVTPEQSQTLIN QAALAEFMRGLGFVPLIATTALATGVYAVAGFTFVYAVGYLSPNPMVAAVLGAVVISA EVLLLRSIGKWLGRYPSVRNASDNIRNAMNMLMEVALLVGSIFAAIKMAGYTGFSIAV AIYFLNESLGRPVQKMAAPVVAVMITGILLNVLYWLGLFVPA" misc_feature complement(3475270..3476547) /gene="yhfT" /locus_tag="SF3395" /note="Protein of unknown function; Region: YhfT; pfam10797" /db_xref="CDD:431502" gene complement(3476574..3476966) /gene="yhfU" /locus_tag="SF3396" /db_xref="GeneID:1024062" CDS complement(3476574..3476966) /gene="yhfU" /locus_tag="SF3396" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709151.1" /db_xref="GeneID:1024062" /translation="MKIPLNFSNKDRLMKKIGVAGLQREQIKKTIEATAPGCFEVFIH NDMEAAMKVKSGQLDYYIGACNTGAGAALSIAIAVIGYNKSCTIAKPGIKAKDEHIAK MIAEGKVAFGLSVEHVEHAIPMLINHLK" misc_feature complement(3476580..3476924) /gene="yhfU" /locus_tag="SF3396" /note="Protein of unknown function DUF2620; Region: DUF2620; pfam10941" /db_xref="CDD:431548" gene complement(3476938..3477816) /locus_tag="SF3397" /pseudogene="unknown" /db_xref="GeneID:1026539" gene complement(3477813..3479039) /gene="yhfW" /locus_tag="SF3398" /db_xref="GeneID:1026528" CDS complement(3477813..3479039) /gene="yhfW" /locus_tag="SF3398" /note="Code: G; COG: COG1015" /codon_start=1 /transl_table=11 /product="mutase" /protein_id="NP_709153.1" /db_xref="GeneID:1026528" /translation="MARFVVLVIDSFGVGAMKDVTLVRPQDAGANTCGHILSQLPHLQ LPTLEKLGLINTLGYAPGDMQPSDSATWGVAELQHEGGDTFMGHQEILGTRPLPPLRM PFRDVIDRVEQALVSAGWQVERRGDDLQFLSVNQAVAIGDNLEADLGQVYNITANLSV ISFDDAIKIGRIVRDQVQVGRVITFGGLLTNSQRILDAAESKEGRFIGINAPRSGAYD NGFQVVHMGYGVDEKVQVPQKLYEAGVPTVLVGKVADIVSNPYGVSWQNLVDSQRIMD ITLDEFNTHPTAFICINIQETDLAGHAEDVARYAERLQVVDRNLARLVEAMQPDDCLV VMADHGNDPTIGHSHHTREVVPVLVYQQGLVATQLGVRTTLSDVGATVCEFFRAPPPQ NGRSFLSSLRFAGDTL" misc_feature complement(3477822..3479039) /gene="yhfW" /locus_tag="SF3398" /note="putative mutase; Provisional; Region: PRK12383" /db_xref="CDD:237085" misc_feature complement(order(3477990..3477992,3478023..3478028, 3478134..3478136,3478152..3478154,3478284..3478286, 3478368..3478370,3478380..3478382,3478485..3478487, 3478491..3478493,3478497..3478499,3478587..3478589, 3478593..3478595,3478599..3478601,3478605..3478607, 3478788..3478790,3479010..3479012)) /gene="yhfW" /locus_tag="SF3398" /note="active site" /db_xref="CDD:293733" misc_feature complement(order(3477990..3477992,3478023..3478025, 3478134..3478136,3478152..3478154,3478284..3478286, 3478380..3478382,3478485..3478487,3478491..3478493, 3478497..3478499,3478587..3478589,3478599..3478601, 3478605..3478607,3478788..3478790)) /gene="yhfW" /locus_tag="SF3398" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:293733" gene complement(3479040..3480203) /gene="yhfX" /locus_tag="SF3399" /db_xref="GeneID:1023385" CDS complement(3479040..3480203) /gene="yhfX" /locus_tag="SF3399" /note="Code: E; COG: COG3457" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709154.1" /db_xref="GeneID:1023385" /translation="MFVEALKRQNPALISAALSLWQQGKIAPDSWVIDVDQILENGKR LIETARLYGIELYLMTKQFGRNPWLAEKLLALGYSGIVAVDYKEARVMRRAGLPVAHQ GHLVQIPCHQVADAVEQGTDIITVFTLDKAREVSAAAVKAGRVQPVLLKVYSDDDFLY PGQESGFVQHSLHEVIAEIKKLPGLHLAGLTHFPCLLWDEAAGKVLPTPNLHTLVQAR DQLAKSGIAIEQLNVPSATSCTSLPLLAEYGATHAEPGHALTGTIPANQQGDQPERIA MLWLSEISHHFRGDSYCYGGGYYRRGHAQHALVFTPENQKITETNLKTVDDSSIDYTL PLAGEYPVSSAVVLCFRTQIFVTRSDVVLVSGIQRGEPEIVGRYDSLGNPLEA" misc_feature complement(3479058..3480203) /gene="yhfX" /locus_tag="SF3399" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX; Region: PLPDE_III_yhfX_like; cd06811" /db_xref="CDD:143486" misc_feature complement(order(3479085..3479087,3479307..3479312, 3479319..3479321,3479325..3479327,3479331..3479333, 3479343..3479354,3479709..3479720,3479802..3479804, 3479814..3479816,3479823..3479825,3479862..3479864, 3479922..3479924,3479940..3479945,3479949..3479954, 3480015..3480017,3480021..3480023,3480120..3480122)) /gene="yhfX" /locus_tag="SF3399" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143486" misc_feature complement(order(3479310..3479312,3479433..3479444, 3479496..3479501,3479625..3479627,3479715..3479717, 3479751..3479753,3479883..3479885,3479958..3479960, 3480021..3480023,3480027..3480029)) /gene="yhfX" /locus_tag="SF3399" /note="active site" /db_xref="CDD:143486" misc_feature complement(order(3479433..3479444,3479496..3479501, 3479625..3479627,3479751..3479753,3479883..3479885, 3479958..3479960,3480021..3480023,3480027..3480029)) /gene="yhfX" /locus_tag="SF3399" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143486" misc_feature complement(order(3479433..3479435,3479625..3479627, 3479715..3479717,3480021..3480023)) /gene="yhfX" /locus_tag="SF3399" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143486" misc_feature complement(3480021..3480023) /gene="yhfX" /locus_tag="SF3399" /note="catalytic residue [active]" /db_xref="CDD:143486" gene complement(3480287..3480691) /gene="yhfY" /locus_tag="SF3400" /db_xref="GeneID:1026520" CDS complement(3480287..3480691) /gene="yhfY" /locus_tag="SF3400" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709155.1" /db_xref="GeneID:1026520" /translation="MGNRNPVIKRKASDMETRLNLLCEAGVIDKDVCKGMMQVVNVLE KECHLPVRSEQGTMAMTHMASALMRSRRGEEIEPLDNELLAELAQSSHWQAVVQLHQE LLKEFALEVNPCEEGYFLANLYGLWMAANEEV" misc_feature complement(<3480317..>3480580) /gene="yhfY" /locus_tag="SF3400" /note="Transcriptional antiterminator [Transcription]; Region: BglG; COG3711" /db_xref="CDD:442925" gene complement(3480666..3481571) /gene="yhfZ" /locus_tag="SF3401" /db_xref="GeneID:1026532" CDS complement(3480666..3481571) /gene="yhfZ" /locus_tag="SF3401" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709156.3" /db_xref="GeneID:1026532" /translation="MRRTFIKKEGVVITTLARYLLGEKCGNRLKTIDELATECRSSVG LTQAALKTLESSGAIRIERRGRNGSYLVEMDNKALLSHVDINNVVCAMPLPYTRLYEG LASGLKAQFDGIPFYYAHMRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALE LGPHTYVGEHQLICRKGESGNVKRVGLDSRSADQKIMTDVFFGDSDVERVDLSYHESL QRIVKGDVDAVIWNVVAENELTMLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLL RAVVDKHALLAHQQRVVSGEQEPSY" misc_feature complement(3480669..3481565) /gene="yhfZ" /locus_tag="SF3401" /note="GntR family transcriptional regulator YhfZ; Region: YhfZ_full; NF041241" /db_xref="CDD:469143" gene complement(3481841..3482845) /gene="trpS" /locus_tag="SF3402" /db_xref="GeneID:1027582" CDS complement(3481841..3482845) /gene="trpS" /locus_tag="SF3402" /note="Code: J; COG: COG0180" /codon_start=1 /transl_table=11 /product="tryptophanyl-tRNA synthetase" /protein_id="NP_709157.1" /db_xref="GeneID:1027582" /translation="MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQ HAITVRQDAQKLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFG ELSRMTQFKDKSARYAENINAGLFGYPVLMAADILLYQTNLVPVGEDQKQHLELSRDI AQRFNALYGEIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVK KIKRAVTDSDEPPVVRYDVQNKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGE VADAVSGMLTELQERYHRFRNDEAFLQQVMKDGAEKASVHASRTLKAVYEAIGFVAKP " misc_feature complement(3481847..3482839) /gene="trpS" /locus_tag="SF3402" /note="tryptophanyl-tRNA synthetase; Reviewed; Region: PRK00927" /db_xref="CDD:234866" gene complement(3482838..3483596) /gene="gph" /locus_tag="SF3403" /db_xref="GeneID:1025952" CDS complement(3482838..3483596) /gene="gph" /locus_tag="SF3403" /note="Code: R; COG: COG0546" /codon_start=1 /transl_table=11 /product="phosphoglycolate phosphatase" /protein_id="NP_709158.1" /db_xref="GeneID:1025952" /translation="MNKFEDIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEE RVITWIGNGADVLMERALTWARQERATLRKTMGKPPVDDDIPAEEQVRILRKLFDRYY GEVAEEGTFLFPHVADTLGALQAKGLPLGLVTNKPTPFVAPLLEALDIAKYFSVVIGG DDVQNKKPHPDPLLLVAERMGIAPQQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGE AIDLSQPDVIYQSINDLLPALGLPHSENQESKND" misc_feature complement(3482865..3483593) /gene="gph" /locus_tag="SF3403" /note="N-acetylmuramic acid 6-phosphate phosphatase MupP; Region: PRK13222" /db_xref="CDD:237310" misc_feature complement(order(3483009..3483014,3483021..3483026, 3483096..3483098,3483192..3483197,3483546..3483560)) /gene="gph" /locus_tag="SF3403" /note="active site" /db_xref="CDD:319854" gene complement(3483589..3484266) /gene="rpe" /locus_tag="SF3404" /db_xref="GeneID:1026889" CDS complement(3483589..3484266) /gene="rpe" /locus_tag="SF3404" /note="Code: G; COG: COG0036" /codon_start=1 /transl_table=11 /product="ribulose-phosphate 3-epimerase" /protein_id="NP_709159.1" /db_xref="GeneID:1026889" /translation="MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVP NLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRT LQLIKENGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLRE VRRRIDESGFDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDQPDYKKVIDEMRSE LAKVSHE" misc_feature complement(3483601..3484257) /gene="rpe" /locus_tag="SF3404" /note="Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Region: Rpe; COG0036" /db_xref="CDD:439806" gene complement(3484284..3485120) /gene="dam" /locus_tag="SF3405" /db_xref="GeneID:1026531" CDS complement(3484284..3485120) /gene="dam" /locus_tag="SF3405" /note="Code: L; COG: COG0338" /codon_start=1 /transl_table=11 /product="DNA adenine methylase" /protein_id="NP_709160.1" /db_xref="GeneID:1026531" /translation="MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLN TDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQ DPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFF YCESYADSMERADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVE RHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPA KK" misc_feature complement(3484308..3485120) /gene="dam" /locus_tag="SF3405" /note="adenine-specific DNA-methyltransferase; Region: PRK10904" /db_xref="CDD:182825" gene complement(3485227..3486519) /gene="damX" /locus_tag="SF3406" /db_xref="GeneID:1023869" CDS complement(3485227..3486519) /gene="damX" /locus_tag="SF3406" /note="Code: S; COG: COG3266" /codon_start=1 /transl_table=11 /product="cell division protein DamX" /protein_id="NP_709161.1" /db_xref="GeneID:1023869" /translation="MDEFKPEDELKPDPSDRRTGRSRQSSERSERTERGEPQINFDDI ELDDTDDRRPTRAQKERNEEPEIEEEIDESEDETVDEERVERRPRKRKKAASKPASRQ YMMMGVGILVLLLLIIGIGSALKAPSTTSSDQTASGEKSIDLAGNATDQANGVQPAPG TTSAENTQQDVSLPPISSTPTQGQTPVATDGQQRVEVQGDLNNALTQPQNQQQLNNVA VNSTLPTEPATVAPVRNGNASRDTAKTQTAERPSTTRPVRQQAVIEPKKPQATVKTEP KPVAQTPKRTEPEPAAPVASTKAPAATSTPAPKETATTAPVQTASPAQTTATPAAGGK TAGNVGSLKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVS GVYASKEEAKKAVSTLPADVQAKNPWAKPLRQVQADLK" misc_feature complement(3485230..3486207) /gene="damX" /locus_tag="SF3406" /note="cell division protein DamX; Validated; Region: PRK10905" /db_xref="CDD:236792" gene complement(3486611..3487699) /gene="aroB" /locus_tag="SF3407" /db_xref="GeneID:1023505" CDS complement(3486611..3487699) /gene="aroB" /locus_tag="SF3407" /note="Code: E; COG: COG0337" /codon_start=1 /transl_table=11 /product="3-dehydroquinate synthase" /protein_id="NP_709162.1" /db_xref="GeneID:1023505" /translation="MERIVVTLGERSYPITIASGLFNEPASFLPLKSGEQVMLVTSET LAPLYLDKVRGVLEQAGVNVDSVILPDGEQYKSLAVLDTVFTALLQKPHGRDTTLVAL GGGVVGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQP ASVVVDLDCLKTLPPRELASGLAEVIKYGIILDGAFFNWLEENLDALLRLDGPAMAYC IRRCCELKAEVVAADERETGLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGMVMAA RTSERLGQFSSAETQRIITLLTRAGLPVNGPREMSAQAYLPHMLRDKKVLAGEMRLIL PLAIGKSKVRSGVSHELVLNAIADCQSA" misc_feature complement(3486632..3487699) /gene="aroB" /locus_tag="SF3407" /note="3-dehydroquinate synthetase [Amino acid transport and metabolism]; Region: AroB; COG0337" /db_xref="CDD:440106" gene complement(3487756..3488478) /gene="aroK" /locus_tag="SF3408" /db_xref="GeneID:1023789" CDS complement(3487756..3488478) /gene="aroK" /locus_tag="SF3408" /note="Code: E; COG: COG0703" /codon_start=1 /transl_table=11 /product="shikimate kinase I" /protein_id="NP_709163.4" /db_xref="GeneID:1023789" /translation="MVARQRACSDQICRGMGDLFSCQTRWSIEIIFSLTLAISYEVSV HVLRRSLSEAGLSLTNSLSSTEKMAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDS DQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGSVKSRETRNR LSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPPREVLEALANERNPLYEEIADVT IRTDDQSAKVVANQIIHMLESN" misc_feature complement(3487759..3488277) /gene="aroK" /locus_tag="SF3408" /note="shikimate kinase AroK; Region: aroK; PRK05057" /db_xref="CDD:235335" misc_feature complement(order(3487918..3487920,3487939..3487941, 3488221..3488238)) /gene="aroK" /locus_tag="SF3408" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:238260" misc_feature complement(order(3488170..3488172,3488176..3488178, 3488224..3488226)) /gene="aroK" /locus_tag="SF3408" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:238260" misc_feature complement(order(3487858..3487860,3488029..3488037, 3488089..3488091,3488098..3488100,3488170..3488172)) /gene="aroK" /locus_tag="SF3408" /note="putative shikimate binding site [active]" /db_xref="CDD:238260" gene complement(3488678..3489916) /gene="hofQ" /locus_tag="SF3409" /db_xref="GeneID:1026535" CDS complement(3488678..3489916) /gene="hofQ" /locus_tag="SF3409" /note="Code: N; COG: COG1450" /codon_start=1 /transl_table=11 /product="porin" /protein_id="NP_709164.2" /db_xref="GeneID:1026535" /translation="MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQE KLNLVVSPDVSGTVSLHLTDVPWKQALQTVVKSAGLITRQEGNILSVHSIAWQNDNIA RQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDN KTALSALEQWVAQMDLPVGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTT LGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIK QESEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQA DGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDG KEDERRELVVFITPRLVSSE" misc_feature complement(3488681..3489838) /gene="hofQ" /locus_tag="SF3409" /note="outer membrane porin HofQ; Provisional; Region: hofQ; PRK10560" /db_xref="CDD:182549" gene complement(3489828..3490273) /gene="yrfA" /locus_tag="SF3410" /pseudo /db_xref="GeneID:1023388" misc_feature complement(3489828..3490273) /gene="yrfA" /locus_tag="SF3410" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789794 (148 aa). BLAST with identity of 99% in 148 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(3490224..3490595) /gene="yrfB" /locus_tag="SF3411" /db_xref="GeneID:1023870" CDS complement(3490224..3490595) /gene="yrfB" /locus_tag="SF3411" /note="Code: N; COG: COG2165" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709165.1" /db_xref="GeneID:1023870" /translation="MLMLVTLIFLSSTHHEERDALIRLRASHHQQWAALYRLVDTTPF SEEKTLPFSPLDFQLSGAQLVSWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRF SLSVEGDDLLFTLQLEMPHEG" gene complement(3490648..3491187) /gene="yrfC" /locus_tag="SF3412" /db_xref="GeneID:1025320" CDS complement(3490648..3491187) /gene="yrfC" /locus_tag="SF3412" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709166.1" /db_xref="GeneID:1025320" /translation="MNPPINFLPWRQQRRTAFLRFWLLMFVAPLLLAVGITLILRLTG SAEARIDAVLLQAEQQLARSLQITKPRLLEQQQLREQRSQRQRQRQFTRDWQSALEAL AALLPEHAWLTTISWQQGTLEIKGLTTSITALNALETSLRQDASFHLNQRGATQQDAQ GRWQFEYQLTRKVSDEHVL" misc_feature complement(3490657..3491175) /gene="yrfC" /locus_tag="SF3412" /note="Type IV pilus assembly protein PilN [Cell motility, Extracellular structures]; Region: PilN; COG3166" /db_xref="CDD:442399" gene complement(3491187..3491993) /gene="yrfD" /locus_tag="SF3413" /db_xref="GeneID:1023791" CDS complement(3491187..3491993) /gene="yrfD" /locus_tag="SF3413" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709167.2" /db_xref="GeneID:1023791" /translation="MTGDKEIITMTFKIWQIGLHLQQQEAAAVAIVRGAKECFLQRWW RLPLAHDIIKDGRIVDAQQLAKTLLPWSRELPQRHHIMLAFPASRTLQRSFPRPSMSL GEREQTAWLSGTMARELDMDPDSLRFDYSEDSLSPAYNVTAAQSKELATLLTLAERLR VHVSAITPDASALQRFLPFLPSHQQCLAWRDNEQWLWATRYSWGRKLAVGMTSAKELA AALSVDPDSVAICGEGGFDPWEAVSVRQPPLPPPGGDFAIALGLALGKAY" misc_feature complement(3491202..3491912) /gene="yrfD" /locus_tag="SF3413" /note="Type IV pilus assembly protein, ATPase PilM [Cell motility, Extracellular structures]; Region: PilM; COG4972" /db_xref="CDD:443997" gene 3492086..3494638 /gene="mrcA" /locus_tag="SF3414" /db_xref="GeneID:1026491" CDS 3492086..3494638 /gene="mrcA" /locus_tag="SF3414" /note="Code: M; COG: COG0744" /codon_start=1 /transl_table=11 /product="penicillin-binding protein 1a" /protein_id="NP_709168.4" /db_xref="GeneID:1026491" /translation="MKFVKYFLILAVCCILLGAGSIYGLYRYIEPQLPDVVTLKDVRL QIPMQIYSADGELIAQYGEKRRIPVTLDQIPPEMVKAFIATEDSRFYEHHGVDPVGIF RAASVALFSGHASQGASTITQQLARNFFLSPERTMMRKIKEVFLAIRIEQLLTKDEIL ELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLTLNEMAVIAGLPKAPSTFNPLYSMDRA VARRNVVLSRMLDEGYITQQQFDQTRTEAINANYHAPEIAFSAPYLSEMVRQEMYNRY GESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKVGESAWDNN KITDTLKALPTYGPLLPAAVTSANPQGATAMLADGSTVALSMEGVRWARPYRSDTQQG PTPRKVTDVLQTGQQIWVRQVGDAWWLAQVPEVNSALVSINPQNGAVMALVGGFDFNQ SKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGSDWQPKNSP PQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHTESLALGSA SFTPMQVARGYAVMANGGFLVDPWFISKIENDQGGVIFEAKPKVACPECDIPVIYGDT QKSNVLENNDVEDVAISREQQNVSVPMPQLEQANQALVAKTGAQEYAPHVINTPLAFL IKSALNTNIFGEPGWQGTGWRAGRDLQRRDIGGKTGTTNSSKDAWFSGYGPGVVTSVW IGFDDHRRNLGHTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPEQPLTPPPG IVTVNIDRSTGQLANGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGEAQELF" misc_feature 3492086..3494635 /gene="mrcA" /locus_tag="SF3414" /note="penicillin-binding protein 1a; Provisional; Region: mrcA; PRK11636" /db_xref="CDD:183248" gene complement(3494803..3495363) /gene="nudE" /locus_tag="SF3415" /db_xref="GeneID:1026516" CDS complement(3494803..3495363) /gene="nudE" /locus_tag="SF3415" /note="Code: LR; COG: COG0494" /codon_start=1 /transl_table=11 /product="ADP compounds hydrolase NudE" /protein_id="NP_709169.1" /db_xref="GeneID:1026516" /translation="MNKSLQKPTILNVETVARSRLFTVESVDLEFSNGVRRVYERMRP TNREAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGF GANDLTFLKKLSMAPSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMDLLE DPDFNEARNVSALFLVREWLKGQGRV" misc_feature complement(3494812..3495363) /gene="nudE" /locus_tag="SF3415" /note="adenosine nucleotide hydrolase NudE; Provisional; Region: nudE; PRK11762" /db_xref="CDD:183303" gene 3495683..3497818 /gene="yrfF" /locus_tag="SF3416" /db_xref="GeneID:1026515" CDS 3495683..3497818 /gene="yrfF" /locus_tag="SF3416" /codon_start=1 /transl_table=11 /product="dehydrogenase" /protein_id="NP_709170.1" /db_xref="GeneID:1026515" /translation="MSTIVIFLAALLACSLLAGWLIKVRSRRRQLPWTNAFADAQTRK LTPEERSAVENYLESLTQVLQVPGPTEASAAPISLALNAESNNVMMLTHAITRYGIST DDPNKWRYYLDSVEVHLPPFWEQYINDENTVELIHTDSLPLVISLNGHTLQEYMQETR GYALQPVPSTQASIRGEESEQIELLNIRKETHEEYALSRPRGLREALLIVASFLMFFF CLITPDVFVPWLAGGALLLLGAGLWGLFAPPAKSSLREIHCLRGTPRRWGLFGENDQE QINNISLGIIDLVYPAHWQPYIAQDLGQQTDIDIYLDRHVVRQGRYLSLHDEVKNFPL QHWLRSTIIAAGSLLVLFMLLFWIPLDMPLKFTLSWMKGAQTIEATSVKQLADAGVRV GDTLRISGTGMCNIRTSGTWSAKTNSPFLPFDCSQIIWNDARSLPLPESELVNKATAL TEAVNRQLHPKPEDESRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCSAKDDCVRLK NALVNLGNSKDWDALVKRANAGKLDGVNVLLRPVSAESLDNLVATSTAPFITHETARA AQSLNSPAPGGFLIVSDEGSDFVDQPWPSASLYDYPPQEQWNAFQKLAQMLMHTPFNA EGIVTKIFTDANGTQHIGLHPIPDRSGLWRYLSTTLLLLTMLGSAIYNGVQAWRRYQR HRTRMMEIQAYYESCLNPQLITPSESLIE" misc_feature 3495737..3497797 /gene="yrfF" /locus_tag="SF3416" /note="Intracellular growth attenuator protein IgaA; Region: IgaA; pfam07095" /db_xref="CDD:429290" gene 3497838..3498551 /gene="yrfG" /locus_tag="SF3417" /db_xref="GeneID:1026872" CDS 3497838..3498551 /gene="yrfG" /locus_tag="SF3417" /note="Code: R; COG: COG1011" /codon_start=1 /transl_table=11 /product="GMP/IMP nucleotidase" /protein_id="NP_709171.1" /db_xref="GeneID:1026872" /translation="MLPCRANCFTLEISLMHINIAWQDVDTVLLDMDGTLLDLAFDNY FWQKLVPETWGAKNGVTPQEAMEYMRQQYHDVQHTLNWYCLDYWSEQLGLDICAMTTE MGPRAVLREDTIPFLEALKASGKQRILLTNAHPHNLAVKLEHTGLDAHLDLLLSTHTF GYPKEDQRLWHAVAEATGLKAERTLFIDDSEAILDAAAQFGIRYCLGVTNPDSGIAEK QYQRHPSLNDYRRLIPSLM" misc_feature 3497883..3498548 /gene="yrfG" /locus_tag="SF3417" /note="GMP/IMP nucleotidase; Provisional; Region: PRK14988" /db_xref="CDD:237882" misc_feature order(3497928..3497942,3498228..3498233,3498327..3498329, 3498399..3498404,3498411..3498416) /gene="yrfG" /locus_tag="SF3417" /note="active site" /db_xref="CDD:319763" gene 3498562..3498963 /gene="yrfH" /locus_tag="SF3418" /db_xref="GeneID:1026506" CDS 3498562..3498963 /gene="yrfH" /locus_tag="SF3418" /note="Code: J; COG: COG1188" /codon_start=1 /transl_table=11 /product="ribosome-associated heat shock protein Hsp15" /protein_id="NP_709172.1" /db_xref="GeneID:1026506" /translation="MKEKPAVEVRLDKWLWAARFYKTRALAREMIEGGKVHYNGQRSK PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAALLYEETAESVEKREKMAMAR KLNALTMPHPDRRPDKKERRDLLRFKHGDSE" misc_feature 3498562..3498960 /gene="yrfH" /locus_tag="SF3418" /note="ribosome-associated heat shock protein Hsp15; Provisional; Region: PRK10348" /db_xref="CDD:182397" misc_feature order(3498589..3498591,3498625..3498630,3498634..3498639, 3498643..3498648,3498655..3498660,3498664..3498666, 3498685..3498687,3498688..3498705,3498709..3498711) /gene="yrfH" /locus_tag="SF3418" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:238095" gene 3498988..3499857 /gene="hslO" /locus_tag="SF3419" /db_xref="GeneID:1026490" CDS 3498988..3499857 /gene="hslO" /locus_tag="SF3419" /note="Code: O; COG: COG1281" /codon_start=1 /transl_table=11 /product="heat shock protein 33" /protein_id="NP_709173.2" /db_xref="GeneID:1026490" /translation="MPQHDQLHRYLFENFAVRGELVTVSETLQQILENHDYPQPVKNV LAELLVATSLLTATLKFDGDITVQLQGDGPMNLAVINGNNNQQMRGVARVQGEIPENA DLKTLVGNGYVVITITPSEGERYQGVVGLEGDTLAACLEDYFMRSEQLPTRLFIRTGD VDGKPAAGGMLLQVMPAQNTQQDDFDHLATLTETIKTEELLTLPANEVLWRLYHEEEV TVYDPQDVEFKCTCSRERCADALKTLPDEEVDSILAEDGEIDMHCDYCGNHYLFNAMD IAEIRNNASPADP" misc_feature 3498994..3499842 /gene="hslO" /locus_tag="SF3419" /note="Hsp33 family molecular chaperone HslO; Region: hslO; PRK00114" /db_xref="CDD:234643" gene complement(3500001..3501725) /gene="yhgE" /locus_tag="SF3420" /db_xref="GeneID:1026545" CDS complement(3500001..3501725) /gene="yhgE" /locus_tag="SF3420" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709174.1" /db_xref="GeneID:1026545" /translation="MDNVELSPATRWGMIATGLLQGLVCYLLIAWLAGKNHSWIVYGV PATVAFSSVLLFSVISFKQKRLWGWLALVFIATTGMSGWLKWQTDGMNPWRAEKAIWD FGCYLLLMAMLLLPWIQQSLRIRNGSSRYSYFYQSVWHNVLILLVIFLSNGLTWLVLL LWGELFKLVGITFFNTLFFATDWFMYLTFGLVTALAVILARTQSRLIDSIQKLFTLIA TGLLPLVSLLTLMFIITLPFTGLSAISRHISAAGLLLTLAFLQLILMAIVRDPQKASL PWTGPLRCLIKTALLVAPLYVFVATWGLWLRVAQYGWTVDRLQGALAELVLLVWSLGY FVSIVWRNGQNPLVLQGKVNLAVSLLVLVILVLLNSPVLDSMRISVNSHMARYQSGKN TPDQVTIYMLEQSGRYGRAALESLKSDAGFMKDPKRARDLLMALDGEQHLQEQVSEKV FAENVLIAPGSVKPDATFWSALIQDRYNVMTCIEKDACVLVEQDLNSDGQAERILFAF NDDRVIVYGFDSDRKEWDALDMSLLPNEITKEKLLTAAKDGKLGTRPKAWRDLTVDGE TLEINLSK" misc_feature complement(3500478..3501578) /gene="yhgE" /locus_tag="SF3420" /note="Domain of unknown function (DUF4153); Region: DUF4153; pfam13687" /db_xref="CDD:463956" gene complement(3501801..3501932) /locus_tag="SF3421" /db_xref="GeneID:1023442" CDS complement(3501801..3501932) /locus_tag="SF3421" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709175.1" /db_xref="GeneID:1023442" /translation="MENVLKRLNLGLYGGNIVSGIAFLNEIDANSTGKVSIHHANFF" gene 3502104..3503726 /gene="pckA" /locus_tag="SF3422" /db_xref="GeneID:1026485" CDS 3502104..3503726 /gene="pckA" /locus_tag="SF3422" /note="Code: C; COG: COG1866" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxykinase" /protein_id="NP_709176.2" /db_xref="GeneID:1026485" /translation="MRVNNGLPPQELEAYGISNVHDIVYNPSYDLLYQEELDPSLTGY ERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKGKNDNKPLSPETW QHLKGLVTRQLSGKRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEEL AGFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERMQLIGGTWYGGEMKKGMFSM MNYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDD GVFNFEGGCYAKTIKLSKEAEPEIYNAIRRDALLENVTVREDGTIDFDDGSKTENTRV SYPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTADQTQYHFLSGFTAKLA GTERGITEPTPTFSACFGAAFLSLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRI SIKDTRAIIDAILNGSLDNAETFTLPMFNLAIPTELPGVDTKILDPRNTYASPEQWQE KAETLAKLFIDNFDKYTDTPAGAALVAAGPKL" misc_feature 3502110..3503723 /gene="pckA" /locus_tag="SF3422" /note="phosphoenolpyruvate carboxykinase (ATP); Region: pckA; TIGR00224" /db_xref="CDD:161774" misc_feature order(3502296..3502298,3502722..3502724,3502728..3502730, 3502737..3502742,3502797..3502799,3502851..3502871, 3502905..3502910,3502959..3502961,3502965..3502967, 3502992..3502994,3503100..3503102,3503448..3503450, 3503457..3503459,3503466..3503468) /gene="pckA" /locus_tag="SF3422" /note="active site" /db_xref="CDD:238270" misc_feature order(3502296..3502298,3502722..3502724,3502728..3502730, 3502737..3502742,3502959..3502961,3503100..3503102) /gene="pckA" /locus_tag="SF3422" /note="substrate-binding site [chemical binding]; other site" /db_xref="CDD:238270" misc_feature order(3502740..3502742,3502797..3502799,3502866..3502868, 3502905..3502910,3502959..3502961) /gene="pckA" /locus_tag="SF3422" /note="metal-binding site [ion binding]" /db_xref="CDD:238270" misc_feature order(3502851..3502871,3502992..3502994,3503448..3503450, 3503466..3503468) /gene="pckA" /locus_tag="SF3422" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238270" gene complement(3503802..3505154) /gene="envZ" /locus_tag="SF3423" /db_xref="GeneID:1026481" CDS complement(3503802..3505154) /gene="envZ" /locus_tag="SF3423" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="osmolarity sensor protein" /protein_id="NP_709177.1" /db_xref="GeneID:1026481" /translation="MRRLRFSPRSSFARTLLLIVTLLFASLVTTYLVVLNFAILPSLQ QFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYSNEAAEEAGLRWA QHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPL FRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTR AFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEE CNAIIEQFIDYLRTGQEMPMEMADLNAVLGEVIAAESGYEREIETALYPGSIEVKMHP LSIKRAVANMVVNAARYGNGWIKVSSGTEPNRAWFQVEDDGPGIAPEQRKHLFQPFVR GDSARTISGTGLGLAIVQRIVDNHNGMLELGTSERGGLSIRAWLPVPVTRAQGTTKEG " misc_feature complement(3503838..3505145) /gene="envZ" /locus_tag="SF3423" /note="osmolarity sensor protein; Provisional; Region: envZ; PRK09467" /db_xref="CDD:236531" gene complement(3505151..3505870) /gene="ompR" /locus_tag="SF3424" /db_xref="GeneID:1025367" CDS complement(3505151..3505870) /gene="ompR" /locus_tag="SF3424" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="osmolarity response regulator" /protein_id="NP_709178.2" /db_xref="GeneID:1025367" /translation="MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL TRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY IPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP LTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH PRYIQTVWGLGYVFVPDGSKA" misc_feature complement(3505157..3505870) /gene="ompR" /locus_tag="SF3424" /note="osmolarity response regulator; Provisional; Region: ompR; PRK09468" /db_xref="CDD:181883" gene 3506062..3506574 /gene="greB" /locus_tag="SF3425" /db_xref="GeneID:1026534" CDS 3506062..3506574 /gene="greB" /locus_tag="SF3425" /note="Code: K; COG: COG0782" /codon_start=1 /transl_table=11 /product="transcription elongation factor and transcript cleavage factor" /protein_id="NP_709179.3" /db_xref="GeneID:1026534" /translation="MRIIKQTKGINEMKTPLVTREGYEKLKQELNYLWREERPEVTKK VTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCLENLKIVDYSPQQEGKVFFGAW VEIENDDGVTHRFRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPAGEANW YVNAIEYVKP" misc_feature 3506095..3506565 /gene="greB" /locus_tag="SF3425" /note="transcription elongation factor GreB; Reviewed; Region: greB; PRK01885" /db_xref="CDD:179345" gene 3506770..3508992 /gene="yhgF" /locus_tag="SF3426" /db_xref="GeneID:1026514" CDS 3506770..3508992 /gene="yhgF" /locus_tag="SF3426" /note="Code: R; COG: COG2183" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709180.2" /db_xref="GeneID:1026514" /translation="MPFIARYRKEITGGLDDTQLRNLETRLSYLRELEERRQAILKSI SEQGKLTDDLAKAINATLSKTELEDLYLPYKPKRRTRGQIAIEAGLEPLADLLWSDPS HTPEVAAAQYVDADKGVADTKAALDGARYILMERFAEDAALLAKVRDYLWKNAHLVST VVSGKEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEGVLQLSLNADPQFDEPPKE SYCEQIIMDHLGLRLNNAPADSWRKSVVSWTWRIKVLMHLETELMGTVRERAEDEAIN VFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHTGQAAKA AMTVAALCEKHNVELVAIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAGASVYSA SELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQLARKL DAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKVSR LGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSSELRN LKASDFTDEKFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGA VTNVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRI ALTMRLDEQPGETNSRRGGGNERPQNNRPAAKPRGREAQPAGNSAMMDALAAAMGKKR " misc_feature 3506773..3508851 /gene="yhgF" /locus_tag="SF3426" /note="Transcriptional accessory protein Tex/SPT6 [Transcription]; Region: Tex; COG2183" /db_xref="CDD:441786" gene 3509430..3509657 /gene="feoA" /locus_tag="SF3427" /db_xref="GeneID:1026492" CDS 3509430..3509657 /gene="feoA" /locus_tag="SF3427" /note="Code: P; COG: COG1918" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein A" /protein_id="NP_709181.1" /db_xref="GeneID:1026492" /translation="MQYTPDTAWKITGFSREISPAYRQKLLSLGMLPGSSFDVVRVAP LGDPIHIETRRVSLVLRKKDLALLEVEAVSC" misc_feature 3509430..3509651 /gene="feoA" /locus_tag="SF3427" /note="ferrous iron transporter A; Region: feoA; PRK09555" /db_xref="CDD:181949" gene 3509674..3511995 /gene="feoB" /locus_tag="SF3428" /db_xref="GeneID:1026508" CDS 3509674..3511995 /gene="feoB" /locus_tag="SF3428" /note="Code: P; COG: COG0370" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein B" /protein_id="NP_709182.2" /db_xref="GeneID:1026508" /translation="MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ FSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL YLTLQLLELGIPCIVALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALK LAIDRYKANENVELVHYAQPLLNEADSLAKVMPSDIPLKQRRWLGLQMLEGDIYSRAY AGEASQHLDATLARLRNEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTTAVDK IVLNRFLGLPIFLFVMYLMFLLAINIGGALQPLFNVGSVALFVHGIQWIGYTLHFPDW LTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGK SFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQN GALAVFSLYMLGIVMAVLTGLMLKYTIMRGEATPFVMELPVYHVPHVKSLIIQTWQRL KGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHED NWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEEFNPAEFNLGEELFSAVDETWQSL KDTFSLSVLMNPIEASKGNGEMGTGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMG AIARESSRGWMGFSILWGLNIAYSLATLFYQVASYSQHPTYSLVCILAVILFNIVAIG LLRRARSRVDIELLATRKSVSSCCAASTTGDCH" misc_feature 3509674..3511992 /gene="feoB" /locus_tag="SF3428" /note="Fe(2+) transporter permease subunit FeoB; Region: feoB; PRK09554" /db_xref="CDD:236563" misc_feature 3509701..3509724 /gene="feoB" /locus_tag="SF3428" /note="G1 box; other site" /db_xref="CDD:206667" misc_feature order(3509710..3509712,3509716..3509727,3510031..3510036, 3510040..3510042,3510118..3510126) /gene="feoB" /locus_tag="SF3428" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206667" misc_feature 3509779..3509793 /gene="feoB" /locus_tag="SF3428" /note="Switch I region; other site" /db_xref="CDD:206667" misc_feature 3509782..3509784 /gene="feoB" /locus_tag="SF3428" /note="G2 box; other site" /db_xref="CDD:206667" misc_feature 3509839..3509850 /gene="feoB" /locus_tag="SF3428" /note="G3 box; other site" /db_xref="CDD:206667" misc_feature order(3509848..3509874,3509887..3509916,3509926..3509931) /gene="feoB" /locus_tag="SF3428" /note="Switch II region; other site" /db_xref="CDD:206667" misc_feature 3510031..3510042 /gene="feoB" /locus_tag="SF3428" /note="G4 box; other site" /db_xref="CDD:206667" misc_feature 3510118..3510126 /gene="feoB" /locus_tag="SF3428" /note="G5 box; other site" /db_xref="CDD:206667" gene 3511995..3512231 /gene="yhgG" /locus_tag="SF3429" /db_xref="GeneID:1026512" CDS 3511995..3512231 /gene="yhgG" /locus_tag="SF3429" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein FeoC" /protein_id="NP_709183.2" /db_xref="GeneID:1026512" /translation="MASLIQVRDLLALRGRMEATQISQTLNTPQPMINAMLQQLESMG KAVRIQEEPDGCLSGSCKSCPEGKACLREWWALR" misc_feature 3511995..3512228 /gene="yhgG" /locus_tag="SF3429" /note="[Fe-S]-dependent transcriptional repressor FeoC; Region: PRK15431" /db_xref="CDD:185329" gene 3512434..3513321 /gene="yhgA" /locus_tag="SF3430" /db_xref="GeneID:1026509" CDS 3512434..3513321 /gene="yhgA" /locus_tag="SF3430" /codon_start=1 /transl_table=11 /product="transposase" /protein_id="NP_709184.1" /db_xref="GeneID:1026509" /translation="MSKKQSSTPHDALFKLFLRQPETARDFLAFHLPAPIHALCDMKT LKLESRSFIDDDLRESYSDVLWSVKTEQGPGYIYCLIEHQSTSNKLIAFRMMRYAIAA MQNHLDAGYKTLPMVVPLLFYHGIESPYPYSLCWLDCFADPKLARQLYASAFPLIDVT VMPDDEIMQHRRMALLELIQKHIRQRDLMGLVEQMACLLSSGYANDRQIKGLFNYILQ TGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLADI MRFTGLSEEELAAASRLAP" misc_feature 3512434..3513309 /gene="yhgA" /locus_tag="SF3430" /note="recombination-promoting nuclease RpnA; Region: PRK09857" /db_xref="CDD:182117" mobile_element 3513306..3514636 /mobile_element_type="insertion sequence:IS2" gene 3513352..3513762 /locus_tag="SF3431" /db_xref="GeneID:1026523" CDS 3513352..3513762 /locus_tag="SF3431" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_709185.3" /db_xref="GeneID:1026523" /translation="MIVLILVFRLVIGVQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 3513397..3513759 /locus_tag="SF3431" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 3513720..3514625 /locus_tag="SF3432" /db_xref="GeneID:1026521" CDS 3513720..3514625 /locus_tag="SF3432" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_709186.1" /db_xref="GeneID:1026521" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGPRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature 3513720..3514622 /locus_tag="SF3432" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene 3514721..3514990 /locus_tag="SF3433" /db_xref="GeneID:1026522" CDS 3514721..3514990 /locus_tag="SF3433" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709187.1" /db_xref="GeneID:1026522" /translation="MQTVKLRQQGGAMIVTIPRDLAIDLGWSPGTELTVEKKGDSVNL RATEHKPRGRLTVAQLLSQIDESEITELNQSTEGWAEGKKGNEAW" misc_feature 3514721..3514987 /locus_tag="SF3433" /note="Antitoxin component MazE of the MazEF toxin-antitoxin module [Defense mechanisms]; Region: MazE; COG2336" /db_xref="CDD:441907" gene 3514984..3515349 /locus_tag="SF3434" /db_xref="GeneID:1026487" CDS 3514984..3515349 /locus_tag="SF3434" /note="Code: T; COG: COG2337" /codon_start=1 /transl_table=11 /product="PemK protein" /protein_id="NP_709188.1" /db_xref="GeneID:1026487" /translation="MVKARTPHRGEIWYFNPDPVAGHELQGPHYCIVVTDKKLNNVLK VAMCCPISTGANAARSTGVTVNVLPRDTQTGNLHGVVLCHQLKAVDLIARGAKFHTVA DEKLISEVISKLVNLIDPQ" misc_feature 3514999..3515343 /locus_tag="SF3434" /note="mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module [Defense mechanisms]; Region: MazF; COG2337" /db_xref="CDD:441908" gene complement(3515350..3516138) /gene="bioH" /locus_tag="SF3435" /db_xref="GeneID:1026527" CDS complement(3515350..3516138) /gene="bioH" /locus_tag="SF3435" /note="Code: R; COG: COG0596" /codon_start=1 /transl_table=11 /product="carboxylesterase BioH" /protein_id="NP_709189.2" /db_xref="GeneID:1026527" /translation="MNNIWWQTKGQGNVHLVLLHGWGLNAEVWRCIDEELSSHFTLHL VDLPGFGRSRGFGALSLADMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQAL VTVASSPCFSARDEWPGIKPDVLAGFQQQLSDDFQRTVERFLALQTMGTETARQDARA LKKTVLALPMPEVDVLNGGLEILKTVDLRQPLQNVSMPFLRLYGYLDGLVPRKVVPML DKLWPHSESYIFAKAAHAPFISHPVEFCHLLVALKQRVLVVSES" misc_feature complement(3515371..3516138) /gene="bioH" /locus_tag="SF3435" /note="pimeloyl-ACP methyl ester esterase BioH; Region: PRK10349" /db_xref="CDD:137836" gene 3516128..3516859 /gene="yhgH" /locus_tag="SF3436" /db_xref="GeneID:1023930" CDS 3516128..3516859 /gene="yhgH" /locus_tag="SF3436" /note="Code: R; COG: COG1040" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709190.4" /db_xref="GeneID:1023930" /translation="MLFIRYCSLLTYKDEHMLTVPGLCWLCRMPLALGHWGICSVCSR ATRTDKTLCPQCGLPATHSHLPCGRCLQKPPPWQRLVTVADYAPPLSPLIHQLKFSRR SEIASALSRLLLLEVLHARRTTGLQLPDRIISVPLWQRRHWRRGFNQSDLLCQPLSRW LHCQWDSEAVTRTRATATQHFLSARLRKRNLKNAFRLELPVQGRHMVIVDDVVTTGST VAEIAQLLLRNGAATVQVWCLCRTL" misc_feature 3516176..3516856 /gene="yhgH" /locus_tag="SF3436" /note="DNA utilization protein GntX; Provisional; Region: PRK11595" /db_xref="CDD:183221" gene 3516918..3517493 /gene="yhgI" /locus_tag="SF3437" /db_xref="GeneID:1026524" CDS 3516918..3517493 /gene="yhgI" /locus_tag="SF3437" /codon_start=1 /transl_table=11 /product="Fe/S biogenesis protein NfuA" /protein_id="NP_709191.1" /db_xref="GeneID:1026524" /translation="MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYC PPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVA DDAPLMERVEYMLQSQINPQLAGHGGRVSLMEITEDGYAILQFGGGCNGCSMVDVTLK EGIEKQLLNEFPELKGVRDLTEHQRGEHSYY" misc_feature 3516918..3517490 /gene="yhgI" /locus_tag="SF3437" /note="iron-sulfur cluster biogenesis protein NfuA; Region: PRK11190" /db_xref="CDD:183027" gene 3517854..3519170 /gene="gntT" /locus_tag="SF3438" /db_xref="GeneID:1026529" CDS 3517854..3519170 /gene="gntT" /locus_tag="SF3438" /note="Code: GE; COG: COG2610" /codon_start=1 /transl_table=11 /product="high-affinity gluconate transporter" /protein_id="NP_709192.1" /db_xref="GeneID:1026529" /translation="MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLD KVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV LTGFTVGFALFYEVGFVLMLPLVFTIAASANIPLLYVGVPMAAALSVTHGFLPPHPGP TAIATIFNADMGKTLLYGTILAIPTVILAGPVYARVLKGIDKPIPEGLYSAKTFSEEE MPSFGVSVWTSLVPVVLMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFT FGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNI SPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPQLMVIAVGSGSVIFSH VNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLVGCLLLNMVI" misc_feature 3517854..3519167 /gene="gntT" /locus_tag="SF3438" /note="gluconate transporter; Region: PRK14984" /db_xref="CDD:237880" gene complement(3519215..3521299) /gene="malQ" /locus_tag="SF3439" /db_xref="GeneID:1026873" CDS complement(3519215..3521299) /gene="malQ" /locus_tag="SF3439" /note="Code: G; COG: COG1640" /codon_start=1 /transl_table=11 /product="4-alpha-glucanotransferase" /protein_id="NP_709193.1" /db_xref="GeneID:1026873" /translation="MESKRLDNAALAAGISPNYINAHGKPQSISAETKRRLLDAMHQR TATKVAVTPVPNVMVYTSGKKMPMVVEGSGEYSWQLTTEEGTQYKGHVTGGKAFNLPT KLPEGYHTLTLTQDDQRAHCRVIVAPKRCYEPQALLNKQKLWGACVQLYTLRSEKNWG IGDFGDLKAMLVDVAKRGGSFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNA VEDFHLSEEAQAWWQLPTTQQTLQQARDADWVDYSTVTALKMTALRMAWKGFAQRDDE QMAAFRQFVAEQGDSLFWQAAFDALHAQQVKEDEMRWGWPAWPEMYKNVDSPEVRQFC EEHRDDVDFYLWLQWLAYSQFAACWEISQGYEMPIGLYRDLAVGVAEGGAETWCDREL YCLKASVGAPPDILGPLGQNWGLPPMDPHIITARAYEPFIELLRANMQNCGALRIDHV MSMLRLWWIPYGETADQGAYVHYPVDDLLSILALESKRHRCMVIGEDLGTVPVEIVGK LRSSGVYSYKVLYFENDHEKTFRAPKAYPEQSMAVAATHDLPTLRGYWESGDLTLGKT LGLYPDEVVLRGLYQDRELAKQGLLDALHKYGCLPKRAGHKASLMSMTPTLNRGLQRY IADSNSALLGLQPEDWLDMAEPVNIPGTSYQYKNWRRKLSATLESMFADDGVNKLLKD LDRRRRAAAKKK" misc_feature complement(3519248..3521299) /gene="malQ" /locus_tag="SF3439" /note="4-alpha-glucanotransferase; Provisional; Region: malQ; PRK11052" /db_xref="CDD:236831" gene complement(3521309..3523702) /gene="malP" /locus_tag="SF3440" /db_xref="GeneID:1026480" CDS complement(3521309..3523702) /gene="malP" /locus_tag="SF3440" /note="Code: G; COG: COG0058" /codon_start=1 /transl_table=11 /product="maltodextrin phosphorylase" /protein_id="NP_709194.1" /db_xref="GeneID:1026480" /translation="MSQPIFNDKQFQEVLSRQWQRYGLNSAAEMTPRQWWLAVSEALA EMLRAQPFAKPVANQRHVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDL LEEEIDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPD DWHRSNYPWFRHNEALDVQVGIGGKVMKDGRWEPEFTITGQAWDLPVVGYRNGVAQPL RLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQ CACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLTDEHQMSWDDAW AITSKTFAYTNHTLMPEALERWDVKLVKGLLPRHMQIINEINTRFKTLVEKTWPGDEK VWAKLAVVHDKQVHMANLCVVGGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN GITPRRWIKQCNPALAALLDKSLQKEWANDLDQLINLEKFADDAKFRQQYREIKQANK VCLAEFVKVRTGIEINPQAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENLQADRVP RVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLVGDKLKVVFLPDYCVSAAEKLIP AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVE QVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGDKHAFDQMLHSIGKQGGDPYL VMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR" misc_feature complement(3521312..3523699) /gene="malP" /locus_tag="SF3440" /note="maltodextrin phosphorylase; Provisional; Region: PRK14985" /db_xref="CDD:237881" gene 3524314..3526995 /gene="malT" /locus_tag="SF3441" /pseudo /db_xref="GeneID:1026513" misc_feature 3524314..3526995 /gene="malT" /locus_tag="SF3441" /note="Similar to Escherichia coli K12 positive regulator of mal regulon gi: 2367223 (902 aa). BLAST with identity of 99% in 894 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(3527051..3527872) /gene="yhgJ" /locus_tag="SF3442" /db_xref="GeneID:1026446" CDS complement(3527051..3527872) /gene="yhgJ" /locus_tag="SF3442" /note="Code: K; COG: COG0430" /codon_start=1 /transl_table=11 /product="RNA 3'-terminal-phosphate cyclase" /protein_id="NP_709195.3" /db_xref="GeneID:1026446" /translation="MEGAELGSQRLVFRPGTVRGGDYRFAIGSAGSCTLVLQTVLPAL WFADGPSRVEVSGGTDNPSAPPADFIRRVLEPLLAKIGIHQQTTLLRHGFYPAGGGVV ATEVSPVASFSTLQLGERGNIVQMRGEVLLAGVPRHVAEREIATLAGIFSLHEQNIHN LPRDQGPGNTVSLEVESENITERFFVVGEKRVSAEVVAAQLVKEVKRYLASPAAVGEY LADQLVLPMALAGAGEFTVAHPSCHLLTNIAVVERFLPVRFGLIETDGVTRVSIE" misc_feature complement(3527063..3527869) /gene="yhgJ" /locus_tag="SF3442" /note="RNA 3'-terminal phosphate cyclase; Region: PRK04204" /db_xref="CDD:235255" gene complement(3528071..3529297) /gene="rtcB" /locus_tag="SF3443" /db_xref="GeneID:1026469" CDS complement(3528071..3529297) /gene="rtcB" /locus_tag="SF3443" /note="Code: S; COG: COG1690" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709196.1" /db_xref="GeneID:1026469" /translation="MNYELLTTENAPVKMWTKGVPVEADARQQLINTAKMPFIFKHIA VMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAELRQA IETAVPHGRTTGRCKRDKGAWENPPFNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHL GTLGTGNHFIEICLDESEQVWIMLHSGSRGIGNAIGTYFIDLAQKEMQDQLETLPSRD LAYFMEGTEYFDDYLRAVAWAQLFASLNRDAMMENVVTALQSITQKTVRQPQTLAMEE INCHHNYVQKEQLFGEEIYVTRKGAVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCS CSHGAGRVMSRTKAKKLFSVEDQIRATAHVECRKDAEVIDEIPMAYKDIDAVMAAQSD LVEVIYTLRQVVCVKG" misc_feature complement(3528074..3529276) /gene="rtcB" /locus_tag="SF3443" /note="RNA-splicing ligase RtcB, repairs tRNA damage [Translation, ribosomal structure and biogenesis]; Region: RtcB; COG1690" /db_xref="CDD:441296" gene 3529478..3531076 /gene="rtcR" /locus_tag="SF3444" /db_xref="GeneID:1026468" CDS 3529478..3531076 /gene="rtcR" /locus_tag="SF3444" /note="Code: O; COG: COG1221" /codon_start=1 /transl_table=11 /product="2-component regulator" /protein_id="NP_709197.1" /db_xref="GeneID:1026468" /translation="MRKTVAFGFVGTVLDYAGRGSQRWSKWRPSLCIYQQESLVIDRL ELLHDARSRSLFETLKRDIASVSPETEVVGVEIELHNPWDFEEVYACLHDFARGYEFQ PEKEDYLIHITTGTHVAQICWFLLAEARYLPARLIQSSTPRKKEQPRGPGEVTIIDLD LSRYNAIASRFAEERQQTLDFLKSGIATRNPHFNRMIEQIEKVAIKSRAPILLNGPTG AGKSFLARRIFELKQARHQFSGAFVEVNCATLRGDTAMSTLFGHVKGAFTGARESREG LLRSANGGMLFLDEIGELGADEQAMLLKAIEEKTFYPFGSDRQVSSDFQLIAGTVRDL RQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYEVERHATLTGDSVRFNTE ARRAWLAFATSPQATWRGNFRELSASVTRMATFATSGRITLDVVEDEINRLRYNWQES RPSALTALLGAEAENIDLFDRMQLEHVIAICRQAKSLSAAGRQLFDVSRQGKASVNDA DRLRKYLARFGLTWEAVQDQHSSS" misc_feature 3529478..3531064 /gene="rtcR" /locus_tag="SF3444" /note="Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]; Region: RtcR; COG4650" /db_xref="CDD:443688" gene complement(3531058..3531816) /gene="glpR" /locus_tag="SF3445" /db_xref="GeneID:1026465" CDS complement(3531058..3531816) /gene="glpR" /locus_tag="SF3445" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor GlpR" /protein_id="NP_709198.1" /db_xref="GeneID:1026465" /translation="MKQTQRHNGIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNELA EQNLILRHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAEQIPNGSTLFIDIGTT PEAVAHALLNHSNLRIVTNNLNVANTLMVKEDFRIILAGGELRSRDGGIIGEATLDFI SQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVN MGSISMVDAVYTDAPPPVSVMQVLTDHHIQLELC" misc_feature complement(3531061..3531816) /gene="glpR" /locus_tag="SF3445" /note="DeoR/GlpR family transcriptional regulator; Region: PRK10906" /db_xref="CDD:182827" gene complement(3531833..3532657) /gene="glpG" /locus_tag="SF3446" /db_xref="GeneID:1026488" CDS complement(3531833..3532657) /gene="glpG" /locus_tag="SF3446" /note="Code: R; COG: COG0705" /codon_start=1 /transl_table=11 /product="intramembrane serine protease GlpG" /protein_id="NP_709199.2" /db_xref="GeneID:1026488" /translation="MITSFANPRVAQAFVDYMATQGVILTIQQHNQSDVWLADESQAE RVRAELARFLENPADPRYLAASWLAGHTGSGLHYRRYPFFAALRERAGPVTWVMMIAC VVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLG GAVEKRLGSGKLIVITLISALLSGYMQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQ SGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSLNARKRK" misc_feature complement(3531836..3532657) /gene="glpG" /locus_tag="SF3446" /note="intramembrane serine protease GlpG; Provisional; Region: PRK10907" /db_xref="CDD:182828" gene complement(3532708..3533034) /gene="glpE" /locus_tag="SF3447" /db_xref="GeneID:1026510" CDS complement(3532708..3533034) /gene="glpE" /locus_tag="SF3447" /note="Code: P; COG: COG0607" /codon_start=1 /transl_table=11 /product="thiosulfate sulfurtransferase" /protein_id="NP_709200.2" /db_xref="GeneID:1026510" /translation="MDQFECINVADAHQKLQEKEAVLVDIRDPQSFAMGHAVQAFHLT NDTLGAFMRDNDFDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAWQRQFPA EVAYGA" misc_feature complement(3532711..3533034) /gene="glpE" /locus_tag="SF3447" /note="thiosulfate sulfurtransferase GlpE; Region: glpE; PRK00162" /db_xref="CDD:178908" misc_feature complement(3532840..3532842) /gene="glpE" /locus_tag="SF3447" /note="active site residue [active]" /db_xref="CDD:238721" gene 3533209..3534729 /gene="glpD" /locus_tag="SF3448" /db_xref="GeneID:1026759" CDS 3533209..3534729 /gene="glpD" /locus_tag="SF3448" /note="Code: C; COG: COG0578" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate dehydrogenase" /protein_id="NP_709201.3" /db_xref="GeneID:1026759" /translation="MNEGSMETKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLAC ATSSASSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRP AWMIRIGLFMYDHLGKRTSLPGSTGLRFGANSVLKPEIKRGFEYSDCWVDDARLVLAN AQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWVKQF FDEGMHLPSPYGIRLIKGSHIVVPRVHTQKQAYILQNEDKRIVFVIPWMDEFSIIGTT DVEYKGDPKAVKIEESEINYLLKVYNAHFKKQLSRDDIVWTYSGVRPLCDDESDSPQA ITRDYTLDIHDENGKAPLLSVFGGKLTTYRKLAEHALEKLTPYYQGIGPAWTKESVLP GGAIEGDRDDYAARLRRRYPFLTESLARHYTRTYGSNSELLLGNAGTVSDLGEDFGHE FYEAELKYLVDHEWVRRTDDALWRRTKQGMWLNADQQSRVSQWLVEYTQQKLSLAS" misc_feature 3533302..3534726 /gene="glpD" /locus_tag="SF3448" /note="glycerol-3-phosphate dehydrogenase; Reviewed; Region: glpD; PRK12266" /db_xref="CDD:237027" mobile_element complement(3535323..3536748) /mobile_element_type="insertion sequence:IS4" gene complement(3535336..3536682) /locus_tag="SF3450" /db_xref="GeneID:1026484" CDS complement(3535336..3536682) /locus_tag="SF3450" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_709203.1" /db_xref="GeneID:1026484" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature complement(3535594..3536592) /locus_tag="SF3450" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene complement(3536782..3539229) /gene="glgP" /locus_tag="SF3451" /db_xref="GeneID:1026471" CDS complement(3536782..3539229) /gene="glgP" /locus_tag="SF3451" /note="Code: G; COG: COG0058" /codon_start=1 /transl_table=11 /product="glycogen phosphorylase" /protein_id="NP_709204.1" /db_xref="GeneID:1026471" /translation="MNAPFTYSSPTLSVEALKHSIAYKLMFTIGKDPVVANKHEWLNA TLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNAMLSLGIYEDVQGAL EAMGLNLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNI VNGSQKESPDYWLEYGNPWEFKRHNTRYKVRFGGRIQQEGKKTRWIETEEILGVAYDQ IIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTY SGRELRLRQEYFLVSSTIQDILSRHYQLHKTYDNLADKIAIHLNDTHPVLSIPEMMRL LIDEHQFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF LKTLQEQYPNDTDLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF ADFAKIFPGRFTNVTNGVTPRRWLAVANPSLSAVLDEHLGRNWRTDLSLLNELQQHCD FPMVNHAVHQAKLENKKRLAEYIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVI TRYNRIKADPDAKWVPRVNIFGGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV VFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEML DHVGADNIFIFGNTAEEVEELRRQGYKPREYYEKDEELHQVLTQIGSGVFSPEDPGRY RDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYELQEEWTAKAMLNIANMGYFSSDR TIKEYADHIWHIDPVRL" misc_feature complement(3536785..3539229) /gene="glgP" /locus_tag="SF3451" /note="glycogen phosphorylase; Provisional; Region: PRK14986" /db_xref="CDD:184948" gene complement(3539248..3540681) /gene="glgA" /locus_tag="SF3452" /db_xref="GeneID:1026461" CDS complement(3539248..3540681) /gene="glgA" /locus_tag="SF3452" /note="Code: G; COG: COG0297" /codon_start=1 /transl_table=11 /product="glycogen synthase" /protein_id="NP_709205.1" /db_xref="GeneID:1026461" /translation="MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDARVLLPAF PDIRRGVTDAQVVSRRDTFAGHITLLFGHYNGVGIYLIDAPHLYDRPGSPYHDTNLFA YTDNVLRFALLGWVGAEMASGLDPFWRPDVVHVHDWHAGLAPAYLAARGRPAKSVFTV HNLAYQGMFYAHHMNDIQLPWSFFNIHGLEFNGQISFLKAGLYYADHITAVSPTYARE ITEPQFAYGMEGLLQQRHREGRLSGVLNGVDEKIWSPETDLLLASRYTRDTLEDKAEN KSQLQIAMGLKVDDKVPLFAVVSRLTSQKGLDLVLEALPGLLEQGGQLALLGAGDPVL QEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL PLVRRTGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRF VQRQAMAMDFSWQVAAKSYRELYYRLK" misc_feature complement(3539254..3540681) /gene="glgA" /locus_tag="SF3452" /note="glycogen synthase GlgA; Region: glgA; PRK00654" /db_xref="CDD:234809" gene complement(3540681..3541976) /gene="glgC" /locus_tag="SF3453" /db_xref="GeneID:1026462" CDS complement(3540681..3541976) /gene="glgC" /locus_tag="SF3453" /note="Code: G; COG: COG0448" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate adenylyltransferase" /protein_id="NP_709206.2" /db_xref="GeneID:1026462" /translation="MVSLEKNDHLMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPA VHFGGKFRIIDFALSNCINSGIRRMGVITQYQSHTLVQHIQRGWSFFNEEMNEFVDLL PAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKG ARCTVACMPVPIEEASAFGVMAVDENDKIIEFVEKPANPPSMPNDPSKSLASMGIYVF DADYLYELLEEDDRDENSSHDFGKDLIPKITEAGLAYAHPFPLSCVQSDPDAEPYWRD VGTLEAYWKANLDLASVVPELDMYDRNWPIRTYNESLPPAKFVQDRSGSHGMTLNSLV SGGCVISGSVVVQSVLFSRVRVNSFCNIDSAVLLPEVWVGRSCRLRRCVIDRACVIPE GMVIGENAEEDARRFYRSEEGIVLVTREMLRKLGHKQER" misc_feature complement(3540690..3541964) /gene="glgC" /locus_tag="SF3453" /note="glucose-1-phosphate adenylyltransferase; Provisional; Region: glgC; PRK00725" /db_xref="CDD:234824" gene complement(3541994..3543967) /gene="glgX" /locus_tag="SF3454" /db_xref="GeneID:1026472" CDS complement(3541994..3543967) /gene="glgX" /locus_tag="SF3454" /note="Code: G; COG: COG1523" /codon_start=1 /transl_table=11 /product="glycogen debranching protein" /protein_id="NP_709207.1" /db_xref="GeneID:1026472" /translation="MTQLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGQE HRYDLPGNSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQIDG EFKDNPLLHAGHNEPDYRDNAAIAPKCVVVVDHYDWEDDAPPRTPWGSTIIYEAHVKG LTYLHPEIPVEIRGTYKALGHPVMINYLKQLGITALELLPVAQFASEPRLQRMGLSNY WGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPL FSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFR FDLAAVMGRTPEFRQDAPLFTAIQNCPVLSQVKLIAEPWDIAPSGYQVGNFPPLFAEW NDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVTAHDGFTLRDC VCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGTLDLVERRRDSIHALLTTLLLSQG TPMLLAGDEHGHSQHGNNNAYCQDNQLNWLDWSQASSGLTAFTAALIHLRKRIPALVE NRWWEEGDGNVRWLNRYAQPLSTDEWQNGPKQLQILLSDRFLIAINATLEVTEIVLPA GEWHAIPPFAGEDNPVITVVWQGPAHGLCVFQR" misc_feature complement(3541997..3543967) /gene="glgX" /locus_tag="SF3454" /note="glycogen debranching protein GlgX; Region: PRK03705" /db_xref="CDD:235152" gene complement(3543964..3546150) /gene="glgB" /locus_tag="SF3455" /db_xref="GeneID:1026458" CDS complement(3543964..3546150) /gene="glgB" /locus_tag="SF3455" /note="Code: G; COG: COG0296" /codon_start=1 /transl_table=11 /product="glycogen branching protein" /protein_id="NP_709208.1" /db_xref="GeneID:1026458" /translation="MSDRIDRDVINALIAGHFADPFSVLGMHKTTAGLEVRALLPDAT DVWVIEPKTGRKLAKLECLDSRGFFSGVIPRRKNFFRYQLAVVWHGQQNLIDDPYRFG PLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD GRRHPMRLRKESGIWELFIPGAHNGQLYKYEMIDANGNLRLKSDPYAFEAQMRPETAS LICGLPEKVVQTEERKKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYA KWMGFTHLELLPINEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFIDAAHAAGLNVIL DWVPGHFPTDDFALAEFDGTNLYEHSDPREGYHQDWNTLIYNYGRREVSNFLVGNALY WIERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQV SGAVTMAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDPIYRQYHHDKLT FGMLYNYTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL FMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNLTYRHHKAMHELDFDPY GFEWLVVDDKERSVLIFVRRDKEGNEIIVASNFTPVPRHDYRFGINQPGKWREILNTD SIHYHGSNAGNGGTVHSDEIASHGRQHSLSLTLPPLATIWLVREAE" misc_feature complement(3543967..3546138) /gene="glgB" /locus_tag="SF3455" /note="1,4-alpha-glucan branching protein GlgB; Region: PRK05402" /db_xref="CDD:235445" misc_feature complement(order(3544573..3544578,3544777..3544779, 3544933..3544938,3544942..3544944)) /gene="glgB" /locus_tag="SF3455" /note="active site" /db_xref="CDD:200461" misc_feature complement(order(3544573..3544575,3544777..3544779, 3544936..3544938)) /gene="glgB" /locus_tag="SF3455" /note="catalytic site [active]" /db_xref="CDD:200461" gene complement(3546423..3547526) /gene="asd" /locus_tag="SF3456" /db_xref="GeneID:1026459" CDS complement(3546423..3547526) /gene="asd" /locus_tag="SF3456" /note="Code: E; COG: COG0136" /codon_start=1 /transl_table=11 /product="aspartate-semialdehyde dehydrogenase" /protein_id="NP_709209.2" /db_xref="GeneID:1026459" /translation="MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAA PSFGGTTGTLQDAFDLEALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASSLR MKDDAIIILDPVNQDVITDGLNNGIRTFVGGNCTVSLMLMSLGGLFANDLVDWVSVAT YQAASGGGARHMRELLTQMGHLYGHVADELATPSSAILDIERKVTTLTRSGELPVDNF GVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTSSVIPVDGLCVRVGALRCHSQ AFTIKLKKDVSIPTVEELLAAHNPWAKVVPNDREITMRELTPAAVTGTLTTPVGRLRK LNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQLA" misc_feature complement(3546429..3547526) /gene="asd" /locus_tag="SF3456" /note="aspartate-semialdehyde dehydrogenase; Reviewed; Region: PRK06598" /db_xref="CDD:235839" gene 3547718..3548311 /gene="yhgN" /locus_tag="SF3457" /db_xref="GeneID:1026466" CDS 3547718..3548311 /gene="yhgN" /locus_tag="SF3457" /note="Code: S; COG: COG2095" /codon_start=1 /transl_table=11 /product="antibiotic transporter" /protein_id="NP_709210.1" /db_xref="GeneID:1026466" /translation="MNEIISAAVLLILIMDPLGNLPIFMSVLKHTEPKRRRAIMVREL LIALLVMLVFLFAGEKILAFLSLRAETVSISGGIILFLIAIKMIFPSASGNSSGLPAG EEPFIVPLAIPLVAGPTILATLMLLSHQYPNQMGHLVIALLLAWGGTFVILLQSSLFL RLLGEKGVNALERLMGLILVMMATQMFLDGIRMWMKG" misc_feature 3547718..3548308 /gene="yhgN" /locus_tag="SF3457" /note="YhgN family NAAT transporter; Region: PRK10739" /db_xref="CDD:170674" gene complement(3548368..3549645) /gene="gntU" /locus_tag="SF3458" /db_xref="GeneID:1026470" CDS complement(3548368..3549645) /gene="gntU" /locus_tag="SF3458" /note="Code: GE; COG: COG2610" /codon_start=1 /transl_table=11 /product="low affinity gluconate transporter" /protein_id="NP_709211.2" /db_xref="GeneID:1026470" /translation="MKARMHAFLALMVVSMGAGLFSGMPLDKIAATMEKGMGGTLGFL AVVVALGAMFGKILYETGAVDQIAVKMLKSFGHSRAHYAIGLAGLVCALPLFFEVAIV LLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLVPGPAPMLLASQMNADFGWMILI GLCAAIPGMIIAGPLWGNFISRYVELHIPDDISEPHLGEGKMPSFGFSLSLILLPLVL VGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLVAIYGLAMRQGMPKDKVMEICG HALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALTGMGLPIAITCFVLAAAVRIIQ GAATVACLTAVGLVMPVIEQLNYSGAQMAALSICIAGGSIVVSHVNDAGFWLFGKFTG ATEAETLKTWTMMETILGTVGAIVGMIAFQLLS" misc_feature complement(3548374..3549645) /gene="gntU" /locus_tag="SF3458" /note="low affinity gluconate transporter; Provisional; Region: PRK10472" /db_xref="CDD:182485" gene complement(3549712..3550200) /gene="gntK" /locus_tag="SF3459" /db_xref="GeneID:1026875" CDS complement(3549712..3550200) /gene="gntK" /locus_tag="SF3459" /note="Code: P; COG: COG3265" /codon_start=1 /transl_table=11 /product="gluconokinase" /protein_id="NP_709212.4" /db_xref="GeneID:1026875" /translation="MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPL NDDDRKPWLQALNDSAFAMQRTNKVSLIACSALKKHYRDLLREGNPNLSFIYLKGDFD VIESRLKARKGHFFKTQMLVTQFETLQEPGADETDVLVVDIDQPLEGVVASTIEVIKK GK" misc_feature complement(3549718..3550200) /gene="gntK" /locus_tag="SF3459" /note="gluconokinase; Region: gntK; PRK11545" /db_xref="CDD:236926" misc_feature complement(order(3549868..3549870,3549880..3549882, 3550120..3550122,3550126..3550128,3550174..3550197)) /gene="gntK" /locus_tag="SF3459" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238979" misc_feature complement(order(3549868..3549870,3550186..3550191)) /gene="gntK" /locus_tag="SF3459" /note="Gluconate-6-phosphate binding site [chemical binding]; other site" /db_xref="CDD:238979" gene complement(3550378..3551316) /gene="gntR" /locus_tag="SF3460" /db_xref="GeneID:1026464" CDS complement(3550378..3551316) /gene="gntR" /locus_tag="SF3460" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="gluconate operon transcriptional regulator" /protein_id="NP_709213.2" /db_xref="GeneID:1026464" /translation="MTVSRFLRNPEQVSVALRGKIAAALDELGYIPNRAPDILSNATS RAIGVLLPSLTNQVFAEVLRGIESVTDAHGYQTMLAHYGYKPEMEQERLESMLSWNID GLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAVGFDNFEAARQMTTAIIARG HRHIAYLGARLDERTIIKQKGYEQAMLDAGLVPYSVMVEQSSSYSSGIELIRQARREY PQLDGVFCTNDDLAVGAAFECQRLGLKVPDDMAIAGFHGHDIGQVMEPRLASVLTPRE RMGSIGAERLLARIRGESVTPKMLDLGFTLSPGGSI" misc_feature complement(3550381..3551316) /gene="gntR" /locus_tag="SF3460" /note="HTH-type transcriptional regulator GntR; Region: PRK14987" /db_xref="CDD:184949" gene complement(3551597..3552292) /gene="yhhW" /locus_tag="SF3461" /db_xref="GeneID:1026479" CDS complement(3551597..3552292) /gene="yhhW" /locus_tag="SF3461" /note="Code: R; COG: COG1741" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709214.1" /db_xref="GeneID:1026479" /translation="MIYLRKANERGHANHGWLDSWHTFSCANYYDPNFMGFSALRVIN DDVIEAGQGFGTHPHKDMEILTYVLEGTVEHQDSMGNKEQVPAGEFQIMSAGTGIRHS EYNPSSTERLHLYQIWIMPEENGITPRYEQRRFDAVQGKQLVLSPDARDGSLKVHQDM ELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGVKASTSDGLAIWDEQAISIHAD SDSEVLLFDLPPV" misc_feature complement(3551603..3552265) /gene="yhhW" /locus_tag="SF3461" /note="Redox-sensitive bicupin YhaK, pirin superfamily [General function prediction only]; Region: YhaK; COG1741" /db_xref="CDD:441347" gene complement(3552415..3553452) /gene="yhhX" /locus_tag="SF3462" /db_xref="GeneID:1026483" CDS complement(3552415..3553452) /gene="yhhX" /locus_tag="SF3462" /note="Code: R; COG: COG0673" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_709215.2" /db_xref="GeneID:1026483" /translation="MVINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQ APIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLVEKTFTPTL AQAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGEIVEVESHFDYYRPVA ETKPGLPQDGAFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGD LKAIVKTSHLVKIDYPKFIVHGKKGSFIKYGIDQQETSLKANIMPGEPGFAADDSVGV LEYVNDEGVTVREEMKPEMGDYGRVYDALYQTITHGAPNYVKESEVLTNLEILERGFE QASPSTVTLAN" misc_feature complement(3552421..3553449) /gene="yhhX" /locus_tag="SF3462" /note="putative oxidoreductase; Provisional; Region: PRK10206" /db_xref="CDD:182305" gene 3553785..3554273 /gene="yhhY" /locus_tag="SF3463" /db_xref="GeneID:1026478" CDS 3553785..3554273 /gene="yhhY" /locus_tag="SF3463" /note="Code: KR; COG: COG0454" /codon_start=1 /transl_table=11 /product="acetyltransferase YhhY" /protein_id="NP_709216.1" /db_xref="GeneID:1026478" /translation="MSEIVIRHAETRDYEAIRQIHAQPEVYCNTLQVPHPSDHMWQER LADRPGIKQLVACIDGDVVGHLTIDVQQRPRRSHVADFGICVDSRWKNRGVASALMRE MIEMCDNWLRVDRIELTVFVDNAPAIKVYKKFGFEIEGTGKKYALRNGEYVDAYYMAR VK" misc_feature 3553785..3554270 /gene="yhhY" /locus_tag="SF3463" /note="N-acetyltransferase; Region: PRK10140" /db_xref="CDD:182263" misc_feature order(3554034..3554042,3554070..3554075) /gene="yhhY" /locus_tag="SF3463" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(3554332..3556074) /gene="ggt" /locus_tag="SF3464" /db_xref="GeneID:1026476" CDS complement(3554332..3556074) /gene="ggt" /locus_tag="SF3464" /note="Code: E; COG: COG0405" /codon_start=1 /transl_table=11 /product="gamma-glutamyltranspeptidase" /protein_id="NP_709217.2" /db_xref="GeneID:1026476" /translation="MIKPTFLRRVAIAALLSGSCFSAAAAPPAPPVSYGVEEDVFHPV RAKQGMVASVDATATQVGVDILKEGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLIR SKNGNTTAIDFREMAPAKATRDMFLDDQGNPDSKKSLTSHLASGTPGTVAGFSLALDK YGTMPLNKVVQPAFKLARDGFIVNDALADDLKTYGSEVLPNHENSKAIFWKEGEPLKK GDTLVQANLAKSLEMIAENGPDEFYKGTIAEQIAQEMQKNGGLITKEDLAAYKAVERT PISGDYRGYQVYSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAY ADRSEYLGDPDFVKVPWQALTNKAYAKSIADQIDIKKAKPSSEIRPGKLAPYESNQTT HYSVVDKDGNAVAVTYTLNTTFGTGIVAGESGILLNNQMDDFSAKPGVPNVYGLVGGD ANAVGPNKRPLSSMSPTIVVKDGKTWLVTGSPGGSRIITTVLQMVVNSIDYGMNVAEA TNAPRFHHQWLPDELRVEKGFSPDTLKLLEAKGQKVALKEAMGSTQSIMVGPDGELYG ASDPRSVDDLTAGY" misc_feature complement(3554335..3556074) /gene="ggt" /locus_tag="SF3464" /note="gamma-glutamyltranspeptidase; Reviewed; Region: ggt; PRK09615" /db_xref="CDD:181992" gene 3556194..3556634 /gene="yhhA" /locus_tag="SF3465" /db_xref="GeneID:1027505" CDS 3556194..3556634 /gene="yhhA" /locus_tag="SF3465" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709218.1" /db_xref="GeneID:1027505" /translation="MKRLLILTALLPFVGFAQPINTLNNPNQPGYQIPSQQRMQTQMQ TQQIQQKGMLNQQLKTQTQLQQQHLENQINNNSQRVLQSQPGERNPARQQMLPNTNGG MLNSNRNPDSSLNQQHMLPERRNGDMLNQPSTPQPDIPLKTIGP" misc_feature 3556194..3556631 /gene="yhhA" /locus_tag="SF3465" /note="DUF2756 family protein; Region: PRK10350" /db_xref="CDD:182398" gene complement(3556621..3557364) /gene="ugpQ" /locus_tag="SF3466" /db_xref="GeneID:1026463" CDS complement(3556621..3557364) /gene="ugpQ" /locus_tag="SF3466" /note="Code: C; COG: COG0584" /codon_start=1 /transl_table=11 /product="cytoplasmic glycerophosphodiester phosphodiesterase" /protein_id="NP_709219.1" /db_xref="GeneID:1026463" /translation="MSNWPYPRIVAHRGGGKLAPENTLAAIDVGAKYGHKMIEFDAKL SKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDAGSWYSKAFKGEPLPLLSQVAE RCREHGMMANIEIKPTTGTGPLTGKMVALAARQLWAGMTPPLLSSFEIDALEAAQQAA PELPRGLLLDEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKP QHAAELLRWGVDCICTDAIDVIGPNFTAQ" misc_feature complement(3556624..3557364) /gene="ugpQ" /locus_tag="SF3466" /note="cytoplasmic glycerophosphodiester phosphodiesterase; Provisional; Region: ugpQ; PRK09454" /db_xref="CDD:236524" misc_feature complement(order(3556726..3556728,3556927..3556929, 3557023..3557025,3557203..3557205,3557242..3557244, 3557248..3557250,3557329..3557331)) /gene="ugpQ" /locus_tag="SF3466" /note="putative active site [active]" /db_xref="CDD:176505" misc_feature complement(order(3557203..3557205,3557329..3557331)) /gene="ugpQ" /locus_tag="SF3466" /note="catalytic site [active]" /db_xref="CDD:176505" misc_feature complement(order(3557023..3557025,3557242..3557244, 3557248..3557250)) /gene="ugpQ" /locus_tag="SF3466" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176505" gene complement(3557361..3559728) /gene="ugpC" /locus_tag="SF3468" /pseudo /db_xref="GeneID:1026475" misc_feature complement(3557361..3559728) /gene="ugpC" /locus_tag="SF3468" /note="Similar to Escherichia coli K12 ATP-binding component of sn-glycerol 3-phosphate transport system gi: 1789859 (370 aa). BLAST with identity of 96% in 789 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element 3558216..3559544 /mobile_element_type="insertion sequence:iso-IS10R" gene 3558323..3559531 /locus_tag="SF3467" /db_xref="GeneID:1026486" CDS 3558323..3559531 /locus_tag="SF3467" /codon_start=1 /transl_table=11 /product="insertion element iso-IS10R transposase" /protein_id="NP_709220.1" /db_xref="GeneID:1026486" /translation="MCELDILHDSLYQFCPELHLKRLNSLTLACHALLDCKTLTLTEL GRNLPTKARTKHNIKRIDRLLGNRHLHKERLAVYRWHASFICSGNTMPIVLVDWSDIR EQKRLMVLRASVALHGRSVTLYEKAFPLSEQCSKKAHDQFLADLASILPSNTTPLIVS DAGFKVPWYKSVEKLGWYWLSRVRGKVQYADLGAENWKPISNLHDMSSSHSKTLGYKR LTKSNPISCQILLYKSRSKGRKNQRSTRTHCHHPSPKIYSASAKEPWILATNLPVEIR TPKQLVNIYSKRMQIEETFRDLKSPAYGLGLRHSRTSSSERFDIMLLIALMLQLTCWL AGVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYTITREDSLVAATLLTQNL FTHGYVLGKL" misc_feature 3558437..3559492 /locus_tag="SF3467" /note="IS4 family transposase; Region: transpos_IS4_2; NF033591" /db_xref="CDD:468100" gene complement(3559691..3560536) /gene="ugpE" /locus_tag="SF3469" /db_xref="GeneID:1026425" CDS complement(3559691..3560536) /gene="ugpE" /locus_tag="SF3469" /note="Code: G; COG: COG0395" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate ABC transporter permease" /protein_id="NP_709221.1" /db_xref="GeneID:1026425" /translation="MIENRPWLTIFSHTMLILGIAVILFPLYVAFVAATLDKQAVYAA PMTLIPGTHLLENIHNIWVNGVGTNSAPFWRMLLNSFVMAFSITLGKITVSMLSAFAI VWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF LFRQFFMTLPDELVEAARIDGASPMRFFCDIVFPLSKTNLAALFVITFIYGWNQYLWP LLIITDVDLGTTVAGIKGMIATGEGTTEWNSVMAAMLLTLIPPVVIVLVMQRAFVRGL VDSEK" misc_feature complement(3559694..3560536) /gene="ugpE" /locus_tag="SF3469" /note="sn-glycerol-3-phosphate ABC transporter permease UgpE; Region: PRK10973" /db_xref="CDD:182875" misc_feature complement(order(3559760..3559762,3559769..3559774, 3559781..3559786,3559790..3559795,3559802..3559807, 3559835..3559840,3559877..3559882,3559889..3559900, 3559919..3559921,3559928..3559933,3559973..3559975, 3560024..3560026,3560033..3560038,3560048..3560050, 3560054..3560059,3560066..3560068,3560072..3560074, 3560078..3560083,3560138..3560140,3560144..3560149, 3560156..3560185,3560189..3560200,3560228..3560230, 3560243..3560248,3560255..3560260)) /gene="ugpE" /locus_tag="SF3469" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(3559883..3559900,3560138..3560182)) /gene="ugpE" /locus_tag="SF3469" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(3559805..3559807,3559835..3559837, 3559844..3559846,3559880..3559882,3560138..3560140)) /gene="ugpE" /locus_tag="SF3469" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(3559952..3559954,3559964..3559969, 3559985..3560023)) /gene="ugpE" /locus_tag="SF3469" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(3560533..3561420) /gene="ugpA" /locus_tag="SF3470" /db_xref="GeneID:1026473" CDS complement(3560533..3561420) /gene="ugpA" /locus_tag="SF3470" /note="Code: G; COG: COG1175" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate transporter permease" /protein_id="NP_709222.1" /db_xref="GeneID:1026473" /translation="MSSSRPVFRSRWLPYLLVAPQLIITVIFFIWPAGEALWYSLQSV DPFGFSSQFVGLDNFVTLFHDSYYLDSFWTTIKFSTFVTVSGLLVSLFFAALVEYIVR GSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLAEFGYDWNHAQNSGQAMFL VVFASVWKQISYNFLFFYAALQSIPRSLIEAAAIDGAGPIRRFFKIALPLIAPVSFFL LVVNLVYAFFDTFPVIDAATSGGPVQATTTLIYKIYREGFTGLDLASSAAQSMVLMFL VIVLTVVQFRYVESKVRYQ" misc_feature complement(3560536..3561375) /gene="ugpA" /locus_tag="SF3470" /note="sn-glycerol-3-phosphate ABC transporter permease UgpA; Region: PRK10561" /db_xref="CDD:182550" misc_feature complement(order(3560623..3560628,3560635..3560640, 3560668..3560673,3560710..3560715,3560728..3560739, 3560758..3560760,3560767..3560772,3560812..3560814, 3560863..3560865,3560872..3560877,3560887..3560889, 3560893..3560898,3560905..3560907,3560911..3560913, 3560920..3560925,3561040..3561042,3561046..3561051, 3561058..3561087,3561091..3561102,3561130..3561132, 3561142..3561147,3561154..3561159)) /gene="ugpA" /locus_tag="SF3470" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(3560722..3560739,3561040..3561084)) /gene="ugpA" /locus_tag="SF3470" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(3560638..3560640,3560668..3560670, 3560677..3560679,3560713..3560715,3560938..3560940, 3561040..3561042)) /gene="ugpA" /locus_tag="SF3470" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(3560791..3560793,3560803..3560808, 3560824..3560862)) /gene="ugpA" /locus_tag="SF3470" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(3561518..3562834) /gene="ugpB" /locus_tag="SF3471" /db_xref="GeneID:1026451" CDS complement(3561518..3562834) /gene="ugpB" /locus_tag="SF3471" /note="Code: G; COG: COG1653" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate ABC transporter substrate-binding protein" /protein_id="NP_709223.1" /db_xref="GeneID:1026451" /translation="MKPLHYTASALALGLALMGNAQAVTTIPFWHSMEGELGKEVDSL AQRFNAENPDYKIVPTYKGNYEQNLSAGIAVFRTGNAPAILQVYEVGTATMMASKAIK PVYDVFKEAGIQFDESQFVPTVSGYYSDSKTGHLLSQPFNSSTSVLYYNKDAFKKAGL DPEQPPKTWQDLADYSAKLKASGIKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDG TDAVLEFNKPEQVKHIAMLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLAN IREYAKFNYGVGMMPYDADAKDAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKP ENAAEWHQKTGYLPITKAAYDLTREQGFYEKNPGADTATRQMLNKPPLPFTKGLRLGN MPQIRVIVDEELESVWTGKKTPQQALDTAVERGNQLLRRFEKSTKS" misc_feature complement(3561524..3562783) /gene="ugpB" /locus_tag="SF3471" /note="sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB; Region: PRK10974" /db_xref="CDD:182876" misc_feature complement(order(3561644..3561646,3561797..3561799, 3561914..3561919,3562025..3562027,3562403..3562405, 3562409..3562411,3562568..3562573,3562640..3562642)) /gene="ugpB" /locus_tag="SF3471" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270451" gene complement(3563231..3563944) /gene="livF" /locus_tag="SF3472" /db_xref="GeneID:1026419" CDS complement(3563231..3563944) /gene="livF" /locus_tag="SF3472" /note="Code: E; COG: COG0410" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_709224.2" /db_xref="GeneID:1026419" /translation="MEKVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGK TTLLGTLCGDPRATSGLIVFDDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA MGGFFAERDQFQERIKWVYELFPRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLL LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLS DTGDALLANEAVRSAYLGG" misc_feature complement(3563234..3563944) /gene="livF" /locus_tag="SF3472" /note="high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; Region: livF; PRK11614" /db_xref="CDD:183231" gene complement(3563946..3564713) /gene="livG" /locus_tag="SF3473" /db_xref="GeneID:1026443" CDS complement(3563946..3564713) /gene="livG" /locus_tag="SF3473" /note="Code: E; COG: COG0411" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_709225.1" /db_xref="GeneID:1026443" /translation="MSQPLLSVNGLMMRFGGLLAVNNVNLELYPQEIVSLIGPNGAGK TTVFNCLTGFYKPTGGTILLRDQHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLL VAQHQQLKTGLFSGLLKTPSFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQR RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVM GISDRIYVVNQGTPLANGTPEQIRNNPDVIRAYLGEA" misc_feature complement(3563949..3564713) /gene="livG" /locus_tag="SF3473" /note="leucine/isoleucine/valine transporter ATP-binding subunit; Provisional; Region: livG; PRK11300" /db_xref="CDD:183080" gene complement(3564710..3565987) /gene="livM" /locus_tag="SF3474" /db_xref="GeneID:1026442" CDS complement(3564710..3565987) /gene="livM" /locus_tag="SF3474" /note="Code: E; COG: COG0559" /codon_start=1 /transl_table=11 /product="leucine/isoleucine/valine ABC transporter permease" /protein_id="NP_709226.1" /db_xref="GeneID:1026442" /translation="MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDIR WQWMFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLVVA WPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYY GLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGG PNGISQIPKPTLFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSL FVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQ GFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAVLLVVSRELMRDFNEYSMLMLGG LMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA" misc_feature complement(3564731..3565987) /gene="livM" /locus_tag="SF3474" /note="leucine/isoleucine/valine transporter permease subunit; Provisional; Region: livM; PRK11301" /db_xref="CDD:236896" gene complement(3565984..3566910) /gene="livH" /locus_tag="SF3475" /db_xref="GeneID:1023775" CDS complement(3565984..3566910) /gene="livH" /locus_tag="SF3475" /note="Code: E; COG: COG0559" /codon_start=1 /transl_table=11 /product="branched-chain amino acid ABC transporter permease" /protein_id="NP_709227.1" /db_xref="GeneID:1023775" /translation="MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHG EVYMIGSYVSFMIIAALMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNS KRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVI WIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAV AGVLLGQFYCVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLS TEYKDVVSFALLILVLLVMPTGILGRPEVEKV" misc_feature complement(3565987..3566910) /gene="livH" /locus_tag="SF3475" /note="high-affinity branched-chain amino acid ABC transporter permease LivH; Region: PRK10740" /db_xref="CDD:182689" misc_feature complement(3566281..3566337) /gene="livH" /locus_tag="SF3475" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119324" gene complement(3566958..3568067) /gene="livK" /locus_tag="SF3476" /db_xref="GeneID:1026441" CDS complement(3566958..3568067) /gene="livK" /locus_tag="SF3476" /note="Code: E; COG: COG0683" /codon_start=1 /transl_table=11 /product="leucine ABC transporter substrate-binding protein LivK" /protein_id="NP_709228.2" /db_xref="GeneID:1026441" /translation="MKRNAKTIIAGMIALAISHTAMADDIKVAVVGAMSGPIAQWGDM EFNGARQAIKDINVKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVK PQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGITAGEKDFSALIARLKKENID FVYYGGYYPEMGQMLRQARSVGLKTQFMGPEGVGNASLSNIAGDAAEGMLVTMPKRYD QDPANQGIVDALKADKKDPSGPYVWITYAAVQSLATALERTGSDEPLALVKDLKANGA NTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTAAK" misc_feature complement(3566961..3568067) /gene="livK" /locus_tag="SF3476" /note="high-affinity branched-chain amino acid ABC transporter substrate-binding protein; Region: PRK15404" /db_xref="CDD:237959" misc_feature complement(order(3567321..3567323,3567393..3567395, 3567549..3567551,3567696..3567701,3567762..3567770)) /gene="livK" /locus_tag="SF3476" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380565" gene 3568491..3568874 /gene="yhhK" /locus_tag="SF3477" /db_xref="GeneID:1026431" CDS 3568491..3568874 /gene="yhhK" /locus_tag="SF3477" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709229.1" /db_xref="GeneID:1026431" /translation="MKLTIIRLENFSDQDRIDLQKIWPEYSPSSLQVDDNHRIYAARF NERLLAAVRVTLSGTEGALDSLRVREVTRRRGVGQYLLEEVLRNNPGVSCWWMADAGV EDRGVMTAFMQALGFTAQQGGWEKR" misc_feature 3568491..3568868 /gene="yhhK" /locus_tag="SF3477" /note="aspartate 1-decarboxylase autocleavage activator PanM; Region: matur_PanM; NF033213" /db_xref="CDD:411104" gene complement(3569073..3570233) /gene="livJ" /locus_tag="SF3478" /db_xref="GeneID:1026477" CDS complement(3569073..3570233) /gene="livJ" /locus_tag="SF3478" /note="Code: E; COG: COG0683" /codon_start=1 /transl_table=11 /product="leucine ABC transporter substrate-binding protein LivK" /protein_id="NP_709230.1" /db_xref="GeneID:1026477" /translation="MLNNNITTHVITRRMGILRMNIKGKALLAGCIALAFSNMALAED IKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGNKLQIVKYDDACDPKQAVA VANKVVNDGIKYVIGHLCSSSTQPASDIYEDEGILMITPAATAPELTARGYQLILRTT GLDSDQGPTAAKYILEKVKPQRIAIVHDKQQYGEGLARAVQDGLKKGNANVVFFDGIT AGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLKTQFMGPEGVANVSLS NIAGESAEGLLVTKPKNYDQVPANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLN QSDDPAEIAKYLKANSVDTVMGPLTWDEKGDLKGFEFGVFDWHANGTVTDAK" misc_feature complement(3569076..3570176) /gene="livJ" /locus_tag="SF3478" /note="high-affinity branched-chain amino acid ABC transporter substrate-binding protein; Region: PRK15404" /db_xref="CDD:237959" misc_feature complement(order(3569430..3569432,3569502..3569504, 3569658..3569660,3569805..3569810,3569871..3569879)) /gene="livJ" /locus_tag="SF3478" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380565" gene complement(3570447..3571301) /gene="rpoH" /locus_tag="SF3479" /db_xref="GeneID:1026457" CDS complement(3570447..3571301) /gene="rpoH" /locus_tag="SF3479" /note="Code: K; COG: COG0568" /codon_start=1 /transl_table=11 /product="RNA polymerase factor sigma-32" /protein_id="NP_709231.1" /db_xref="GeneID:1026457" /translation="MTDKMQSLALAPVGNLDSYIRAANAWPMLSADEERALAEKLHYH GDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARE LGVTSKDVREMESRMAAQDMTFDLSSDDDSDSQPMAPVLYLQDKSSNFADGIEDDNWE EQAANRLTDAMHGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMK KLRAAIEA" misc_feature complement(3570450..3571301) /gene="rpoH" /locus_tag="SF3479" /note="RNA polymerase factor sigma-32; Reviewed; Region: PRK06596" /db_xref="CDD:235838" gene complement(3571546..3572604) /gene="ftsX" /locus_tag="SF3480" /db_xref="GeneID:1026429" CDS complement(3571546..3572604) /gene="ftsX" /locus_tag="SF3480" /note="Code: D; COG: COG2177" /codon_start=1 /transl_table=11 /product="cell division ABC transporter subunit FtsX" /protein_id="NP_709232.2" /db_xref="GeneID:1026429" /translation="MNKRDAINHIRQFGGRLDRFRKSVGGSGDGGRNAPKRAKSSPKP VNRKTNVFNEQVRYAFHGALQDLKSKPFATFLTVMVIAISLTLPSVCYMVYKNVNQAA TQYYPSPQITVYLQKTLDDDAAAGVVAQLQAEQGVEKVNYLSREDALGEFRNWSGFGG ALDMLEENPLPAVAVVIPKLDFQGTESLNTLRDRITQINGIDEVRMDDSWFARLAALT GLVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDSINVQKLIGATDGFILRPFLYGG ALLGFSGALLSLILSEILVLRLSSAVAEVAQVFGTKFDINGLSFDECLLLLLVCSMIG WVAAWLATVQHLRHFTPE" misc_feature complement(3571549..3572475) /gene="ftsX" /locus_tag="SF3480" /note="putative protein insertion permease FtsX; Region: ftsX; PRK11026" /db_xref="CDD:182910" gene complement(3572597..3573265) /gene="ftsE" /locus_tag="SF3481" /db_xref="GeneID:1026428" CDS complement(3572597..3573265) /gene="ftsE" /locus_tag="SF3481" /note="Code: D; COG: COG2884" /codon_start=1 /transl_table=11 /product="cell division protein FtsE" /protein_id="NP_709233.2" /db_xref="GeneID:1026428" /translation="MIRFEHVSKAYLGGRQALQGVTFHMQPGEMAFLTGHSGAGKSTL LKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI PLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDINLISRRSYRMLTLSDGHLHGG VGHE" misc_feature complement(3572600..3573265) /gene="ftsE" /locus_tag="SF3481" /note="cell division ATP-binding protein FtsE; Region: PRK10908" /db_xref="CDD:182829" gene complement(3573268..3574764) /gene="ftsY" /locus_tag="SF3482" /db_xref="GeneID:1026434" CDS complement(3573268..3574764) /gene="ftsY" /locus_tag="SF3482" /note="Code: N; COG: COG0552" /codon_start=1 /transl_table=11 /product="signal recognition particle-docking protein FtsY" /protein_id="NP_709234.1" /db_xref="GeneID:1026434" /translation="MAKEKRRGFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEP AKASEQAVEEQPQAHTEAEAETFAADVVEVTEQVVESEKAQPEAEVVAQPEPVVEETP EPVAIEREELPLPEDVNAEEVSPEEWQAEAETVEIVEAAEEEAAKEEITDEELEAQAL AAEAAEEAVMVVPPAEEEQPVAEIAQEQEKPTKEGFFARLKRSLLKTKENLGSGFISL FRGKKIDDDLFEELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEM GEILAKVDEPLNVEDKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR AAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQNKS HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLD GTAKGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED" misc_feature complement(3574183..>3574716) /gene="ftsY" /locus_tag="SF3482" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" misc_feature complement(3573274..3574179) /gene="ftsY" /locus_tag="SF3482" /note="Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport]; Region: FtsY; COG0552" /db_xref="CDD:440318" gene 3574914..3575510 /gene="rsmD" /locus_tag="SF3483" /db_xref="GeneID:1026437" CDS 3574914..3575510 /gene="rsmD" /locus_tag="SF3483" /note="Code: L; COG: COG0742" /codon_start=1 /transl_table=11 /product="16S rRNA (guanine(966)-N(2))-methyltransferase" /protein_id="NP_709235.1" /db_xref="GeneID:1026437" /translation="MKKPNHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLF NWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRVVSQQLIKNLATLKAGN ARVVNSNAMSFLAQKGTPHNIVFVDPPFRRGLLEETINLLEDNGWLADEALIYVESEV ENGLPTVPANWSLHREKVAGQVAYRLYQHEAQGESDAD" misc_feature 3574914..3575507 /gene="rsmD" /locus_tag="SF3483" /note="16S rRNA m(2)G966-methyltransferase; Provisional; Region: rsmD; PRK10909" /db_xref="CDD:236793" misc_feature order(3575088..3575108,3575157..3575162,3575235..3575243, 3575292..3575294) /gene="rsmD" /locus_tag="SF3483" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 3575500..3575769 /gene="yhhL" /locus_tag="SF3484" /db_xref="GeneID:1026426" CDS 3575500..3575769 /gene="yhhL" /locus_tag="SF3484" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709236.2" /db_xref="GeneID:1026426" /translation="MLINIGRLLMLCVWGFLILNLVHPFPRPLNIFVNVALIFTVLMH GMQLALLKSTLPKDGPQMTTAEKVRIFLFGVFELLVWQKKFKVKK" misc_feature 3575500..3575766 /gene="yhhL" /locus_tag="SF3484" /note="DUF1145 family protein; Region: PRK10910" /db_xref="CDD:182831" gene complement(3575772..3576131) /gene="yhhM" /locus_tag="SF3485" /db_xref="GeneID:1026455" CDS complement(3575772..3576131) /gene="yhhM" /locus_tag="SF3485" /codon_start=1 /transl_table=11 /product="receptor" /protein_id="NP_709237.1" /db_xref="GeneID:1026455" /translation="MSKPPLFFIVIIGLIVVAASFRFMQQRREKADNDMAPLQQKLVV VSNKREKPINDRRSRQQEVTPAGTSMRYEASFKPQSGGMEQTFRLDAQQYHALTVGDK GTLSYKGTRFVSFVGEQ" misc_feature complement(3575784..3576119) /gene="yhhM" /locus_tag="SF3485" /note="Protein of unknown function (DUF2500); Region: DUF2500; pfam10694" /db_xref="CDD:431441" gene 3576272..3576898 /gene="yhhN" /locus_tag="SF3486" /db_xref="GeneID:1026447" CDS 3576272..3576898 /gene="yhhN" /locus_tag="SF3486" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709238.1" /db_xref="GeneID:1026447" /translation="MLWSFIAVCLSAWLSVDASYRGPTWQRWVFKPLTLLLLLLLAWQ APMFDAISYLVLAGLCASLLGDALTLLPRQRLMYAIGAFFLSHLLYTIYFASQMTLSF FWPLPLVLLVLGALLLAIIWTRLEEYRWPICTFIGMTLVMVWLAGELWFFRPTAPALS AFVGASLLFISNFVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYL" misc_feature 3576278..3576889 /gene="yhhN" /locus_tag="SF3486" /note="Uncharacterized membrane protein YhhN [Function unknown]; Region: YhhN; COG3714" /db_xref="CDD:442928" gene 3576972..3579170 /gene="zntA" /locus_tag="SF3487" /db_xref="GeneID:1026436" CDS 3576972..3579170 /gene="zntA" /locus_tag="SF3487" /note="Code: P; COG: COG2217" /codon_start=1 /transl_table=11 /product="zinc/cadmium/mercury/lead-transporting ATPase" /protein_id="NP_709239.1" /db_xref="GeneID:1026436" /translation="MSTPDNHGKKAPQFAAFKPLTTVQNANDCCCDGACSSSPTLSEN VSGTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVES AVQKAGYSLRDEQAADEPQASRLKENLPLITLIVMMAISWGLEQFNHPFGQLAFIATT LVGLYPIARQALRLIKSGSYFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEG WAASRARQGVSALMALKPETATRLRNGEREEVAINSLRPGDVIEVAAGGRLPADGKLL SPFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILKLIE EAEERRAPIERFIDRFSRIYTPAIMAVALLVTLVPPLLFAASWQEWIYKGLTLLLIGC PCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRVTQVAFDKTGTLTVGKPRVTA IHPATGISESELLTLAAAVEQGATHPLAQAIVREAQVAELAIPTAESQRALVGSGIEA QVNGERVLICAAGKHPADAFAGLINELESAGQTVVLVVRNDDVLGIIALQDTLRADAT TAISELNALGVKGVILTGDNPRAAAAIAGELGLEFKAGLLPEDKVKAVTKLNQHAPLA MVGDGINDAPAMKAAAIGIAMGSGTDVALETADAALTHNHLRGLVQMIELARATHANI RQNITIALGLKGIFLVTTLLGMTGLWLAVLADTGATVLVTANALRLLRRR" misc_feature 3576972..3579167 /gene="zntA" /locus_tag="SF3487" /note="Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA; Region: P_type_ZntA; NF033775" /db_xref="CDD:468183" gene complement(3579272..3579517) /gene="yhhP" /locus_tag="SF3488" /db_xref="GeneID:1026877" CDS complement(3579272..3579517) /gene="yhhP" /locus_tag="SF3488" /note="Code: K; COG: COG0425" /codon_start=1 /transl_table=11 /product="sulfur transfer protein SirA" /protein_id="NP_709240.1" /db_xref="GeneID:1026877" /translation="MTDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIAD DPATTRDIPGFCTFMEHELVAKETDGLPYRYLIRKGG" misc_feature complement(3579278..3579517) /gene="yhhP" /locus_tag="SF3488" /note="sulfurtransferase TusA; Region: PRK00299" /db_xref="CDD:178967" misc_feature complement(order(3579446..3579448,3579452..3579463, 3579470..3579472,3579479..3579484)) /gene="yhhP" /locus_tag="SF3488" /note="CPxP motif; other site" /db_xref="CDD:239515" gene 3579738..3580403 /gene="yhhQ" /locus_tag="SF3489" /db_xref="GeneID:1026440" CDS 3579738..3580403 /gene="yhhQ" /locus_tag="SF3489" /note="Code: S; COG: COG1738" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709241.1" /db_xref="GeneID:1026440" /translation="MNVFSQTQRYKALFWLSLFHLLVITSSNYLVQLPVSIFGFHTTW GAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLISYVISSLFYMGSWQGFGALA HFNLFVARIATASFMAYALGQILDVHVFNRLRQSRRWWLAPTASTLFGNVSDTLAFFF IAFWRSPDAFMAEHWMEIALVDYCFKVLISIVFFLPMYGVLLNMLLKRLADKSEINAL QAS" misc_feature 3579738..3580367 /gene="yhhQ" /locus_tag="SF3489" /note="7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter; Region: PRK11212" /db_xref="CDD:183041" gene 3580422..3581033 /locus_tag="SF3490" /db_xref="GeneID:1026456" CDS 3580422..3581033 /locus_tag="SF3490" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709242.3" /db_xref="GeneID:1026456" /translation="MIRWMNEPLWPFIERKKSMRNLVKYVGIGLLVMGLAACDDKDTN ATAQGSVAESNATGNPVNLLDGKLSFSLPADMTDQSGKLGTQANNMHVWSDATGQKAV IVIMGDDPKEDLAVLAKRLEDQQRSRDPQLQVVTNKAIELKGHKMQQLDSIISAKGQT AYSSVILGNVGNQLLTMQITLPADDQQKAQTTAENIINTLVIQ" misc_feature 3580476..3581030 /locus_tag="SF3490" /note="hypothetical protein; Provisional; Region: PRK11615" /db_xref="CDD:183232" gene complement(3581037..3582296) /gene="yhhS" /locus_tag="SF3491" /db_xref="GeneID:1026413" CDS complement(3581037..3582296) /gene="yhhS" /locus_tag="SF3491" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="major facilitator superfamily transporter" /protein_id="NP_709243.3" /db_xref="GeneID:1026413" /translation="MVKMKHCCKNVVILMPEPVAEPALNGLRLNLRIVSIVMFNFASY LTIGLPLAVLPGYVHDVMGFSAFWAGLVISLQYFATLLSRPHAGRYADLLGPKKIVVF GLCGCFLSGLGYLTAGLTASLPVISLLLLCLGRVILGIGQSFAGTGSTLWGVGVVGSL HIGRVISWNGIVTYGAMAMGAPLGVVFYHWGGLQALALIIMGVALVAILLAIPRPTVK ASKGKPLPFRAVLGRVWLYGMALALASAGFGVIATFITLFYDAKGWDGAAFALTLFSC AFVGTRLLFPNGINRIGGLNVAMICFSVEIIGLLLVGVATMPWMAKIGVLLAGAGFSL VFPALGVVAVKAVPQQNQGAALATYTVFMDLSLGVTGPLAGLVMSWAGVPVIYLAAAG LVAIALLLTWRLKKRPPEHVPEAASSS" misc_feature complement(3581052..3582248) /gene="yhhS" /locus_tag="SF3491" /note="major facilitator superfamily transporter; Provisional; Region: PRK05122" /db_xref="CDD:235348" gene 3582388..3583437 /gene="yhhT" /locus_tag="SF3492" /db_xref="GeneID:1026453" CDS 3582388..3583437 /gene="yhhT" /locus_tag="SF3492" /note="Code: R; COG: COG0628" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709244.1" /db_xref="GeneID:1026453" /translation="METPQPDKTGMHILLKLASLVVILAGIHAAADIIVQLLLALFFA IVLNPLVTWFIRRGVQRPVAITIVVVVMLIALTALVGVLAASFNEFISMLPKFNKELT RKLFKLQEMLPFLNLHMSPERMLQRMDSEKVVTFTTALMTGLSGAMASVLLLVMTVVF MLFEVRHVPYKMRFALNNPQIHIAGLHRALKGVSHYLALKTLLSLWTGVIVWLGLALM GVQFALMWAVLAFLLNYVPNIGAVISAVPPMIQVLLFNGVYECILVGALFLVVHMVIG NILEPRMMGHRLGMSTMVVFLSLLIWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKL AILLGPGRPKSRLPG" misc_feature 3582388..3583419 /gene="yhhT" /locus_tag="SF3492" /note="AI-2E family transporter; Region: AI-2E_transport; cl00465" /db_xref="CDD:444921" gene 3583492..3584079 /gene="yhhU" /locus_tag="SF3493" /db_xref="GeneID:1026448" CDS 3583492..3584079 /gene="yhhU" /locus_tag="SF3493" /note="Code: Q; COG: COG2091" /codon_start=1 /transl_table=11 /product="holo-(acyl carrier protein) synthase 2" /protein_id="NP_709245.1" /db_xref="GeneID:1026448" /translation="MYRIVLGKVSTLSAAPLPPGLREQAPQGPRRERWLAGRTLLSHT LSPLPEIIYGEQGKPAFAPETPLWFNLSHSGDDIALLLSDEGEVGCDIEVIRPRVNWR WLANAVFSLGEHAEMDAVHPDQQLEMFWRIWTRKEAIVKQRGGSAWQIVSVDSTYHSS LSVSHCQLENLSLAICTPTPFTLTADSVQWIDSVN" misc_feature 3583516..3584076 /gene="yhhU" /locus_tag="SF3493" /note="4'-phosphopantetheinyl transferase AcpT; Region: PRK10351" /db_xref="CDD:182399" gene 3584190..3585764 /gene="nikA" /locus_tag="SF3494" /db_xref="GeneID:1026445" CDS 3584190..3585764 /gene="nikA" /locus_tag="SF3494" /note="Code: EP; COG: COG0747" /codon_start=1 /transl_table=11 /product="nickel ABC transporter substrate-binding protein" /protein_id="NP_709246.1" /db_xref="GeneID:1026445" /translation="MLSTLRRTLFALLACASFIVHAAAPDEITTAWPVNVGPLNPHLY TPNQMFAQSMVYEPLVKYQADGSVIPWLAKSWTHSEDGKTWTFTLRDDVKFSNGEPFD AEAAAENFRAVLDNRQRHAWLELANQIVDVKALNKTELQITLKSAYYPFLQELALPRP FRFIAPSQFKNHETMNGIKAPIGTGPWILQESKLNQYDVFVRNENYWGEKPAIKKITF NVIPDPTTRAVAFETGDIDLLYGNEGLLPLDTFARFSQNPAYHTQLSQPIETVMLALN TAKAPTNELAVREALNYAVNKKSLIDNALYGTQQVADTLFAPSVPYANLGLKPRQYDP QKAKELLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGAD VSLIGEEESSIYARQRDGRFGMIFHRTWGAPYDPHAFLSSMRVPSHADFQAQQGLADK PLIDKEIGEVLATHDETQRQALYRDILTRLHDEAVYLPISYISMMVVSKPELGNIPYA PIATEIPFEQIKPVKP" misc_feature 3584250..3585749 /gene="nikA" /locus_tag="SF3494" /note="nickel ABC transporter, nickel/metallophore periplasmic binding protein; Region: nickel_nikA; TIGR02294" /db_xref="CDD:274072" misc_feature order(3584319..3584321,3584334..3584336,3584544..3584546, 3584553..3584555,3584664..3584666,3585447..3585449, 3585459..3585461,3585723..3585725) /gene="nikA" /locus_tag="SF3494" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:173854" gene 3585764..3586708 /gene="nikB" /locus_tag="SF3495" /db_xref="GeneID:1026439" CDS 3585764..3586708 /gene="nikB" /locus_tag="SF3495" /note="Code: EP; COG: COG0601" /codon_start=1 /transl_table=11 /product="nickel ABC transporter permease NikB" /protein_id="NP_709247.1" /db_xref="GeneID:1026439" /translation="MLRYVLRRFLLLIPMVLAASVIIFLMLRLGTGDPALDYLRLSNL PPTPEMLASTRTMLGLDQPLYVQYGTWLWKALHLDFGISFASQRPVLDDMLNFLPATL ELAGAALVLILLTSVPLGIWAARHRDRLPDFAVRFIAFLGVSMPNFWLAFLLVMAFSV YLQWLPAMGYGSWQHIILPAVSIAFMSLAINARLLRASMLDVAGQRHVTWARLRGLND KQTERRHILRNASLPMITAVGMHIGELIGGTMIIENIFAWPGVGRYAVSAIFNRDYPV IQCFTLMMVVVFVVCNLIVDLLNAALDPRIRRHEGAHA" misc_feature 3585764..3586705 /gene="nikB" /locus_tag="SF3495" /note="nickel transporter permease NikB; Provisional; Region: PRK10352" /db_xref="CDD:182400" gene 3586705..3587538 /gene="nikC" /locus_tag="SF3496" /db_xref="GeneID:1026411" CDS 3586705..3587538 /gene="nikC" /locus_tag="SF3496" /note="Code: EP; COG: COG1173" /codon_start=1 /transl_table=11 /product="nickel ABC transporter permease NikC" /protein_id="NP_709248.1" /db_xref="GeneID:1026411" /translation="MNFFLSSRWSVRLALIIIALLALIALTSQWWQPYDPQAIDLPSC LLSPDAQHWLGTDHLGRDIFSRLMAATRVSLGSVMACLLLVLTLGLVIGGSAGLIGGH VDQATMRVADMFMTFPTSILSFFMVGVLGTGLTNVIIAIALSHWAWYARMVRSLVISL RQREFVLASRLSGAGHVRVFVDHLAGAVIPSLLVLATLDIGHMMLHVAGMSFLGLGVT APTAEWGVMINDARQYIWTQPLQMFWPGLALFISVMAFNLVGDALRDHLDPHLVTEHA H" misc_feature 3586720..3587535 /gene="nikC" /locus_tag="SF3496" /note="nickel transporter permease NikC; Provisional; Region: nikC; PRK10417" /db_xref="CDD:236687" gene 3587538..3588302 /gene="nikD" /locus_tag="SF3497" /db_xref="GeneID:1026393" CDS 3587538..3588302 /gene="nikD" /locus_tag="SF3497" /note="Code: EP; COG: COG0444" /codon_start=1 /transl_table=11 /product="nickel ABC transporter ATP-binding protein NikD" /protein_id="NP_709249.1" /db_xref="GeneID:1026393" /translation="MPQQIELRNITLQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSL TCAATLGILPAGVRQTAGEILADGKPVSPYALRGIKIATIMQNPRSAFNPLHTMHTHA RETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSQGK IVEQGDVETLFNAPKHTVTRSLVSAHLALYGMELAS" misc_feature 3587538..3588299 /gene="nikD" /locus_tag="SF3497" /note="nickel transporter ATP-binding protein NikD; Provisional; Region: nikD; PRK10418" /db_xref="CDD:236688" gene 3588299..3589105 /gene="nikE" /locus_tag="SF3498" /db_xref="GeneID:1024617" CDS 3588299..3589105 /gene="nikE" /locus_tag="SF3498" /note="Code: EP; COG: COG1124" /codon_start=1 /transl_table=11 /product="nickel ABC transporter ATP-binding protein NikE" /protein_id="NP_709250.1" /db_xref="GeneID:1024617" /translation="MTLLNVCGLSHHYAHGGFSGKHQHQAVLNNVSLTLKSGETVALL GRSGCGKSTLARLLVGLESPSQGNISWHGESLAKLNRAQRKAFRRDIQMVFQDSISAV NPRKTVREILREPMRHLLSLKKSEQLARASEMLKAVDLDDSVLDKRPPQLSGGQLQLV CLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERF CQRVMVMDNGQIAETQAVGDKLTFSSDAGRVLQNAVLPAFPVRRRTSEKV" misc_feature 3588299..3589102 /gene="nikE" /locus_tag="SF3498" /note="nickel ABC transporter ATP-binding protein NikE; Region: nikE; PRK10419" /db_xref="CDD:236689" gene 3589111..3589512 /gene="yhhG" /locus_tag="SF3499" /db_xref="GeneID:1026395" CDS 3589111..3589512 /gene="yhhG" /locus_tag="SF3499" /note="Code: K; COG: COG0864" /codon_start=1 /transl_table=11 /product="nickel responsive regulator" /protein_id="NP_709251.1" /db_xref="GeneID:1026395" /translation="MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRSALAQEA TQQHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLK GDMGDVQHFADDVIAQRGVRHGHLQCLPKED" misc_feature 3589111..3589509 /gene="yhhG" /locus_tag="SF3499" /note="nickel-responsive transcriptional regulator NikR; Region: PRK02967" /db_xref="CDD:235093" gene complement(3589632..3589991) /locus_tag="SF3500" /db_xref="GeneID:1026407" CDS complement(3589632..3589991) /locus_tag="SF3500" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709252.2" /db_xref="GeneID:1026407" /translation="MIKLKTPNSMEIAGQPAVITYVPELNAFRGKFLGLSGYCDFVSD SIQGLQKEGELSLREYLEDCKAAGIEPYARTEKIKTFTLRYPESLSERLNNAAAQQQV SVNTYIIETLNERLNHL" misc_feature complement(3589638..3589970) /locus_tag="SF3500" /note="Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]; Region: HicB; COG4226" /db_xref="CDD:443370" gene complement(3590322..3591446) /gene="yhhJ" /locus_tag="SF3501" /db_xref="GeneID:1026449" CDS complement(3590322..3591446) /gene="yhhJ" /locus_tag="SF3501" /note="Code: R; COG: COG0842" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709253.2" /db_xref="GeneID:1026449" /translation="MRHLRNIFNLGIKELRSLLGDKAMLTLIVFSFTVSVYSSATVTP GSLNLAPIAIADMDQSQLSNRIVNSFYRPWFLPPEMITADEMDAGLDAGRYTFAINIP PNFQRDVLAGRQPDIQVNVDATRMSQAFTGNGYIQNIINGEVNSFVARYRDNSEPLVS LETRMRFNPNLDPAWFGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPITPF EIMMAKIWSMGLVVLVVSGLSLVLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIF MGTIARSMPQLGLLVILVLLPLQMLSGGSTPRESMPQMVQDIMLTMPTTHFVSLAQAI LYRGAGFEIVWPQFLTLMAIGGAFFTIALLRFRKTIGTMA" misc_feature complement(<3590595..3591446) /gene="yhhJ" /locus_tag="SF3501" /note="ABC-type Na+ efflux pump, permease component NatB [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NatB; COG1668" /db_xref="CDD:441274" misc_feature complement(3590337..3590927) /gene="yhhJ" /locus_tag="SF3501" /note="ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: YadH; COG0842" /db_xref="CDD:440604" gene complement(3591446..3594181) /gene="yhiH" /locus_tag="SF3502" /db_xref="GeneID:1026450" CDS complement(3591446..3594181) /gene="yhiH" /locus_tag="SF3502" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_709254.1" /db_xref="GeneID:1026450" /translation="MTHLELVPVPPVAQLAGVSQHYGKTVALNNITLDIPARCMVGLI GPDGVGKSSLLSLISGARVIEQGNVVVLGGDMHDPKHRRDVCPRIAWMPQGLGKNLYH TLSVYENVDFFARLFGHDKAEREVRINELLTSTGLAPFRDRPAGKLSGGMKQKLGLCC ALIHDPELLILDEPTTGVDPLSRAQFWDLIDSIRQRQSNMSVLVATAYMEEAERFDWL VAMNAGEVLATGSAEELRQQTQSATLEEAFINLLPQAQRQAHQAVVIPPYQPENAEIA IEARDLTMRFGSFVAVDHVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGEAW LFGQPVDPKDIDTRRRVGYMSQAFSLYNELTVRQNLELHARLFHIPEAEIPARVAEMS ERFKLNDVEDVLPESLPLGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLM VDLSRQDKVTIFISTHFMNEAERCDRISLMHAGKVLASGTPQELVEKRGAASLEEAFI AYLQEAAGQSNEAEAPPVVHDTTHAPRQGFSLRRLFSYSRREALELRRDPVRSTLALM GTVILMLIMGYGISMDVENLRFAVLDRDQTVSSQAWTLNLSGSRYFIEQPPLTSYDEL DRRMRAGDITVAIEIPPNFGRDIARGTPVELGVWIDGAMPSRAETVKGYVQAMHQSWL QDVASRQSTPASQSGLMNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSALSVVR EKELGSIINLYVTPTTRSEFLLGKQLPYIALGMLNFFLLCGLSVFVFGVPHKGSFLTL TLAALLYIIIATGMGLLISTFMKSQIAAIFGTAIITLIPATQFSGMIDPVASLEGPGR WIGEVYPTSHFLTIARGTFSKALDLTDLWQLFIPLLIAIPLVMGLSILLLKKQEG" misc_feature complement(3591452..3594148) /gene="yhiH" /locus_tag="SF3502" /note="ribosome-associated ATPase/putative transporter RbbA; Region: ABC2_perm_RbbA; NF033858" /db_xref="CDD:468210" gene complement(3594178..3595245) /gene="yhiI" /locus_tag="SF3503" /db_xref="GeneID:1026454" CDS complement(3594178..3595245) /gene="yhiI" /locus_tag="SF3503" /note="Code: Q; COG: COG0845" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709255.1" /db_xref="GeneID:1026454" /translation="MDKSKRHLAWWVVGALAVAAVVAWWLLRPAGVPEGFAVSNGRIE ATEVDIASKIAGRIDTILVKEGQFVREGEVLAKMDTRVLQEQRLEAIAQIKEAQSAVA AAQALLEQRQSETRAAQSLVNQRQAELDSVAKRHTRSRSLAQRGAISAQQLDDDRAAA ESARAALESAKAQVSASKAAIEAARTNIIQAQTRVEAAQATERRIAADIDDSELKAPR DGRVQYRVAEPGEVLAAGGRVLNMVDLSDVYMTFFLPTEQAGTLKLGGEARLILDAAP DLRIPATISFVASVAQFTPKTVETSDERLKLMFRVKARIPPELLQQHLEYVKTGLPGV AWVRVNEELPWPDDLVVRLPQ" misc_feature complement(3594226..3595149) /gene="yhiI" /locus_tag="SF3503" /note="Multidrug resistance efflux pump EmrA [Defense mechanisms]; Region: EmrA; COG1566" /db_xref="CDD:441174" gene complement(3595611..3597233) /gene="yhiJ" /locus_tag="SF3504" /db_xref="GeneID:1026415" CDS complement(3595611..3597233) /gene="yhiJ" /locus_tag="SF3504" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709256.1" /db_xref="GeneID:1026415" /translation="MKIGTVAGTNGSTTTIATNDMVQEHVTNFTKELFGYIANGIGDD ISSIARTMLGEVVEKIDDWQIERFQQSIQDDKISFTIQTNHSEKYSMLSGMRAHILRR NNCYQFIVTINSKNYGCPLDNTDINWCSIVYLLNNMTVNDNANDVAVTESYKPIWNWE ISQYNVFDIKFETIIKPQFADRTYFSNCSPVDPTSTRPTYFGDTDGSVGAVLYALFAT GHLGIMAEGENFLSQLLNIEDEVLNVLLRENFNEQLDTNVNTIISILNRRDNVLESLQ PYLVINKDAVTPCTFLGDQTGDRFSNICGDQFIIDLLKRIMSINENVHVLAGNHETNC NGNYMQNFTRMKPLDEDTYDGIKDYPVCFYDPKYKIMANHHGITFDDQRKRYIIGPIT VSIDEMTNALDPVELAEIINKKHHAIINGKKFKTSRAISCRSFNRYFSVSTDYRPKLE ALLACSQMLGINQVVAHNGNGGRERIGETGTVLGLNARDSKHAGRMFSMHNCQINPGA GPEITTPWKSYQHEKNRNGLMPLIRRRTMLQL" misc_feature complement(3595725..3596654) /gene="yhiJ" /locus_tag="SF3504" /note="Domain of unknown function (DUF4049); Region: DUF4049; pfam13258" /db_xref="CDD:289998" gene complement(3597495..3599270) /locus_tag="SF3505" /db_xref="GeneID:1026410" CDS complement(3597495..3599270) /locus_tag="SF3505" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709257.1" /db_xref="GeneID:1026410" /translation="MFFFTIVFQGWIVFHYLVKDRIVSVLKISEHISIIVLYRRKYVF QTCIIYFLLTGQKYRGLFMKAIDNIFKYIPSNHKDKHSDKVNNHQHHSKVDKTHRSKI VEIDKLDNDSQIDNDFGMHIIYFLQHGHWRVNEHSLQMEKIWFYNSEPSIDIQEYNSF ADNTTNTFIFTIIPDNNHVIKLSSPITVKIECKDGYYFINFSGDKSDIIYKVNGLSII PENFFTLLSGNFKADWRWDVSKETFPKDKFDSYVKSVFSKIDFYKQCGVINPQNANTA YFGDTDGRVGAVLYSLLVSGHIGIREKGWSLLCELLKHEDMASSAYIHKNNKLLYNLL NTRDMILNELHQHVFLKDDAITPCIFLGDHTGDRFSTIFGDKYILTLLNSMRNMEGNK DSRINKNVIVLAGNHEINFNGNYTARLENYKLSAGDTYNLIKTLDVCNYNSETKVLTS HHGIIRNEENQCYCLGALQVPFNQMKDPIDPEELANICNKKHKQHMDDHLLHLIRSNA IAPTPVYENYFNNTTAFRPKPEDIFKCGQTLKKTKQKFGHYGLGVDQHQKIDNYTMGL NSWKIAPNERGDKKGVPGLSCFQPQ" misc_feature complement(3597507..3598460) /locus_tag="SF3505" /note="Domain of unknown function (DUF4049); Region: DUF4049; pfam13258" /db_xref="CDD:289998" gene 3599370..3600494 /gene="yhiM" /locus_tag="SF3506" /pseudo /db_xref="GeneID:1026409" misc_feature 3599370..3600494 /gene="yhiM" /locus_tag="SF3506" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1789905 (384 aa). BLAST with identity of 96% in 375 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(3600587..3601102) /locus_tag="SF3507" /db_xref="GeneID:1026879" CDS complement(3600587..3601102) /locus_tag="SF3507" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709258.1" /db_xref="GeneID:1026879" /translation="MTKLMQFVQRCYYMTNKKMYFILILVFTLLQVCFFALWKARDGS TTSLECTSTLTRNAKTDHSLYYSANLSVILKKDGSGSFTIVGLTDEDTPRKFSHSYFF TYKIDSNGRISGNAKAKVSGLENQIKDENFRLNFLDASLTGKGNARLSKFNNVYIFSI PGLIINTCAPI" gene complement(3601056..3601820) /locus_tag="SF3508" /db_xref="GeneID:1026412" CDS complement(3601056..3601820) /locus_tag="SF3508" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709259.1" /db_xref="GeneID:1026412" /translation="MERRCFFIINDAIIFDPNKCSLSNVNTQDEINFPATAGCILAVL LESNGGAVDRNSIIDSVLERFSFDLSNNTLNQYISLLRKSFKNIGVEENVILTIPKVG FYISENITISKQSYDDSHLQEDVVEKVERKRSIPLFRILISLVVVIVIIEMFAVAFKD TYSITDYPLVKSGKIDTCDLYLSENLNEIGLAKSQIEAAEISKKHLPCVPGANFIYDV NSMHYLLGEGQRYLSRCIKSSNDETYAICSEVLLYD" misc_feature complement(3601476..3601802) /locus_tag="SF3508" /note="DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; Region: CadC1; COG3710" /db_xref="CDD:442924" gene 3602066..3602827 /locus_tag="SF3509" /db_xref="GeneID:1026399" CDS 3602066..3602827 /locus_tag="SF3509" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709260.1" /db_xref="GeneID:1026399" /translation="MLSKITQELLKMNNVLLMRPDDSEFMIPDDWSGLNAKGITYEQD NRVTESFLPFKSFYCSPVCTTVELISQNNCFAMGIRYLLEKKRDLRLNHFKAFSHKCE TKPDVLIMTGCTVADTYSIFSRIVEENIMKTMTPIVIITGHHSEDLCSLASKLGGVKI ISPTEKIAKIENAINDAFNSKPKKIRFLTDILSPQQIETMKMVAQGRSVNEISAAMNI SIKTVYAHKVRAINKLGIKKKVYEALFYKALIQFN" misc_feature 3602294..3602776 /locus_tag="SF3509" /note="acid-sensing system DNA-binding response regulator EvgA; Region: PRK09958" /db_xref="CDD:182168" misc_feature <3602618..3602785 /locus_tag="SF3509" /note="DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription]; Region: CitB; COG2197" /db_xref="CDD:441799" gene complement(3602934..3603446) /locus_tag="SF3510" /db_xref="GeneID:1026391" CDS complement(3602934..3603446) /locus_tag="SF3510" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709261.1" /db_xref="GeneID:1026391" /translation="MKKTLLAIMLAGTAFASQAGTLVSQGTEASANLTLTKPIVVNNT IQPVKGVYSGTLTAWTPLATGIVGASDGQSHDYAVTFPDDIYAESSTSADAVISGDNN PDHKLKVSLTTLEQDPPSAASEEIGGKRYMMLKNTGTGGAYRVVSHMKEQVVEPDSYT IRTQAYIYAE" misc_feature complement(3602937..3603326) /locus_tag="SF3510" /note="AfaD-like family of invasins; Region: AfaD_SafA-like; cl38919" /db_xref="CDD:365795" misc_feature complement(order(3602943..3602981,3602985..3602987, 3603054..3603056,3603075..3603077,3603147..3603149, 3603261..3603263,3603288..3603296,3603306..3603308, 3603312..3603314,3603318..3603320,3603324..3603326)) /locus_tag="SF3510" /note="polymer interface [polypeptide binding]; other site" /db_xref="CDD:350651" gene complement(3603585..3604733) /locus_tag="SF3511" /db_xref="GeneID:1026400" CDS complement(3603585..3604733) /locus_tag="SF3511" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709262.1" /db_xref="GeneID:1026400" /translation="MSITTNRYASGYATLTEAVSAQDERNRKRDKNSHDGSTISLSQP LGNIGNLNFNTTRYNSSRGTGNTRSTSLSYSTVWRGITFSINWAKNDLLTSHKWKVDR KLSVGISVPLSLGDENQIYASSQMSRSGEQGNNYQVSLSGQNSGGVWWDVATNITNAH QSQPKSTMNIVQVGKNGSYGQFSSHYSSSENMKQLGANLSGGILITRDGLTFGQNVDG TLALIEAPGATGVNVNGWPGLSTDFRGYAILPVQPYRRDDVILDEKTIGKNYDLPQTS QLVVPTAGAVVPATLAVKSGDKGLVTLKQKEGKPIPFGAVISYSKDTENMAGIVGEDG IAYVSGLSAEGEFNVKWGYSKDQSCIAKYQLPAKKSASGLYQIAATCL" misc_feature complement(3603591..>3604730) /locus_tag="SF3511" /note="Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures]; Region: FimD; COG3188" /db_xref="CDD:442421" mobile_element 3604734..3606064 /mobile_element_type="insertion sequence:IS2" gene 3604780..3605190 /locus_tag="SF3512" /db_xref="GeneID:1026420" CDS 3604780..3605190 /locus_tag="SF3512" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_709263.3" /db_xref="GeneID:1026420" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 3604825..3605187 /locus_tag="SF3512" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 3605148..3606053 /locus_tag="SF3513" /db_xref="GeneID:1026417" CDS 3605148..3606053 /locus_tag="SF3513" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_709264.1" /db_xref="GeneID:1026417" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGPRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKHAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSSVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature 3605148..3606050 /locus_tag="SF3513" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(3605978..3606865) /locus_tag="SF3514" /db_xref="GeneID:1026418" CDS complement(3605978..3606865) /locus_tag="SF3514" /note="Code: M; COG: COG3203" /codon_start=1 /transl_table=11 /product="outer membrane pore protein" /protein_id="NP_709265.1" /db_xref="GeneID:1026418" /translation="MTLRCLLNPWRFSERILTDRENGEKGDNSQDTSYARVGVKGETQ INPEMTGYGQFELDLEASNRHNPDQTRLAYAGLSYKDFGSFDYSRNVGVAYDAEAFTD MFVEWGGDSWAGTDLFMTNRTNGVATYRNTDFFGMVEGLNFALQYQGKNEGTGNYKAN GDGHGLSATYTIDGFSFAGAYANSDRTDWQSGDGKGERAEVWALSTKYDANNVYAAVM YGESHNMNSDDGDVVNKTQNFEAVLQYQFDFGLRPSIGYSYSKALDVAGWICPYISRH LLSLNPLQARCRRYSRGER" misc_feature complement(3606065..3606775) /locus_tag="SF3514" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" misc_feature complement(order(3606500..3606502,3606560..3606562, 3606653..3606655,3606758..3606760)) /locus_tag="SF3514" /note="eyelet of channel [active]" /db_xref="CDD:238208" gene 3606886..3607170 /locus_tag="SF3515" /db_xref="GeneID:1026422" CDS 3606886..3607170 /locus_tag="SF3515" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709266.1" /db_xref="GeneID:1026422" /translation="MPMSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYAW IKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDILKKAAAYFAKLSD" misc_feature 3606886..3607152 /locus_tag="SF3515" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 3607227..3608039 /locus_tag="SF3516" /db_xref="GeneID:1026424" CDS 3607227..3608039 /locus_tag="SF3516" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709267.1" /db_xref="GeneID:1026424" /translation="MLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGY RKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNP DAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWR RNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRER IKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSEQMSPTEYENQYYQRLGSV" misc_feature <3607230..3608006 /locus_tag="SF3516" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(3608359..3608682) /locus_tag="SF3517" /db_xref="GeneID:1026414" CDS complement(3608359..3608682) /locus_tag="SF3517" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709268.1" /db_xref="GeneID:1026414" /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL KSPSYTKSVSWQHYRVIEPRLPTRCQSSPPSLVHRYIRDERFLILISFTIRYFHHFRK QTYFY" mobile_element 3608508..3609275 /mobile_element_type="insertion sequence:IS1" gene 3608757..3609260 /gene="insB" /locus_tag="SF3518" /db_xref="GeneID:1026427" CDS 3608757..3609260 /gene="insB" /locus_tag="SF3518" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709269.1" /db_xref="GeneID:1026427" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTAVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 3608865..3609257 /gene="insB" /locus_tag="SF3518" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3609276..3609839) /gene="yhdX" /locus_tag="SF3519" /pseudo /db_xref="GeneID:1026388" misc_feature complement(3609276..3609839) /gene="yhdX" /locus_tag="SF3519" /note="Similar to Escherichia coli K12 transport system permease gi: 1789669 (369 aa). BLAST with identity of 99% in 187 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(3609889..3610806) /gene="yhdW" /locus_tag="SF3520" /db_xref="GeneID:1026433" CDS complement(3609889..3610806) /gene="yhdW" /locus_tag="SF3520" /note="Code: E; COG: COG0834" /codon_start=1 /transl_table=11 /product="substrate-binding transport protein" /protein_id="NP_709270.2" /db_xref="GeneID:1026433" /translation="MQCGISDGLPRFSYADADGKFSGIDVDVCRGVAAAVFGDDTKVK YTPLTAKERFTALQSGEVDLLSRNTTWTSSRDAGMGMAFTGVTYYDGIGFLTHDKAGL KSAKELDGATVCIQAGTDTELNVADYFKANNMKYTPVTFDRSDESAKALESGRCDTLA SDQSQLYALRIKLSNPAEWIVLPEVISKEPLGPVVRRGDDEWFSIVRWTLFAMLNAEE MGINSQNVDEKAANPATPDMAHLLGKEGDYGKDLKLDNKWAYNIIKQVSNYSEIFERN VGSESPLKIKRGQNNLWNNGGIQYAPPVR" misc_feature complement(3610126..3610806) /gene="yhdW" /locus_tag="SF3520" /note="Substrate bindng domain of ABC glutamate/glutamine/aspartate/asparagine transporter; the type 2 periplasmic binding protein fold; Region: PBP2_BztA; cd13692" /db_xref="CDD:270410" misc_feature complement(order(3610234..3610236,3610321..3610326, 3610447..3610452,3610582..3610584,3610603..3610605, 3610648..3610650,3610780..3610782,3610789..3610791)) /gene="yhdW" /locus_tag="SF3520" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:270410" misc_feature complement(order(3610369..3610371,3610378..3610380, 3610750..3610752,3610762..3610764)) /gene="yhdW" /locus_tag="SF3520" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:270410" gene complement(3610943..3611269) /locus_tag="SF3521" /db_xref="GeneID:1026432" CDS complement(3610943..3611269) /locus_tag="SF3521" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709271.1" /db_xref="GeneID:1026432" /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL KSPSYTKSVSWQHYPFSHHCGALFLLFPVYTQLIATRNRAQKLALLLLIRGWPQTGKR RFPNVL" mobile_element 3611095..3611862 /mobile_element_type="insertion sequence:IS1" gene 3611344..3611847 /gene="insB" /locus_tag="SF3522" /db_xref="GeneID:1026371" CDS 3611344..3611847 /gene="insB" /locus_tag="SF3522" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709272.1" /db_xref="GeneID:1026371" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 3611452..3611844 /gene="insB" /locus_tag="SF3522" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3612065..3613264) /gene="yhiN" /locus_tag="SF3523" /db_xref="GeneID:1026435" CDS complement(3612065..3613264) /gene="yhiN" /locus_tag="SF3523" /note="Code: R; COG: COG2081" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709273.1" /db_xref="GeneID:1026435" /translation="MERFDAIIIGAGAAGMFCSALAGQVGRRVLLIDNGKILGRKILM SGGGRCNFTNLYVEPGAYLSQNPHFCKSALARFTQWDFIDLVNKHGIAWHEKTLGQLF CDDSAQQIVDMLVDECEKGNVTFRLRSEVLSVAKDETGFTLDLNGMTVGCEKLVIATG GLSMPGLGASPFGYKIAEQFGLNVLPTRAGLVPFTLHKPLLEELQVLAGVAVPSVITA ENGTVFRENLLFTHRGLSGPAVLQISSYWQPGEFVSINLLPDVDLETFLNEQRNAHPN QSLKNTLAVHLPKRLVERLQQLGQIPDVSLKQLNVCDQQALISTLTDWRVQPNGTEGY RTAEVTLGGVDTNELSSRTMEARKVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ DLASIVK" misc_feature complement(3612086..3613219) /gene="yhiN" /locus_tag="SF3523" /note="HI0933-like protein; Region: HI0933_like; pfam03486" /db_xref="CDD:427330" gene 3613496..3614995 /gene="pitA" /locus_tag="SF3524" /db_xref="GeneID:1026373" CDS 3613496..3614995 /gene="pitA" /locus_tag="SF3524" /note="Code: P; COG: COG0306" /codon_start=1 /transl_table=11 /product="low-affinity phosphate transport protein" /protein_id="NP_709274.1" /db_xref="GeneID:1026373" /translation="MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIY TRAMRSQLAVVMAAVFNFLGVLLGGLSVAYAIVHMLPTDLLLNMGSSHGLAMVFSMLL AAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNALMTGTSVVDALNIPKVLSIFGSLI VSPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSA IGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNATGYEITRTRDAINNVEAYFEQ HPALLKQATGADQLVPAPEAGATQPAEFHCHPSNTINALNRLKGMLTTDVESYDKLSL DQRSQMRRIMLCVSDTIDKVVKMPGVSADDQRLLKKLKSDMLSTIEYARVWIIMAVAL ALGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVL SSSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAVLLSGGLYWFSLQFL" misc_feature 3613496..3614992 /gene="pitA" /locus_tag="SF3524" /note="Phosphate transporter family; Region: PHO4; cl27575" /db_xref="CDD:474944" gene complement(3615066..3615401) /gene="yhiO" /locus_tag="SF3525" /db_xref="GeneID:1025327" CDS complement(3615066..3615401) /gene="yhiO" /locus_tag="SF3525" /codon_start=1 /transl_table=11 /product="universal stress protein UspB" /protein_id="NP_709275.1" /db_xref="GeneID:1025327" /translation="MISTVALFWALCVVCIVNMARYFSSLRALLVVLRNCDPLLYQYV DGGGFFTSHGQPNKQVRLVWYIYAQRYRDHHDDEFIRRCERVRRQFILTSALCGLVVV SLIALMIWH" misc_feature complement(3615069..3615401) /gene="yhiO" /locus_tag="SF3525" /note="universal stress protein UspB; Provisional; Region: PRK04960" /db_xref="CDD:235323" gene 3615795..3616229 /gene="uspA" /locus_tag="SF3526" /db_xref="GeneID:1026368" CDS 3615795..3616229 /gene="uspA" /locus_tag="SF3526" /note="Code: T; COG: COG0589" /codon_start=1 /transl_table=11 /product="universal stress global response regulator UspA" /protein_id="NP_709276.1" /db_xref="GeneID:1026368" /translation="MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYS DLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKY DMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE" misc_feature 3615795..3616226 /gene="uspA" /locus_tag="SF3526" /note="universal stress protein UspA; Region: PRK15118" /db_xref="CDD:185073" gene 3616550..3618016 /gene="yhiP" /locus_tag="SF3527" /pseudo /db_xref="GeneID:1026380" misc_feature 3616550..3618016 /gene="yhiP" /locus_tag="SF3527" /note="Similar to Escherichia coli K12 transport protein gi: 1789911 (490 aa). BLAST with identity of 98% in 489 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(3618065..3618817) /gene="yhiQ" /locus_tag="SF3528" /db_xref="GeneID:1026390" CDS complement(3618065..3618817) /gene="yhiQ" /locus_tag="SF3528" /note="Code: QR; COG: COG0500" /codon_start=1 /transl_table=11 /product="methyltransferase" /protein_id="NP_709277.2" /db_xref="GeneID:1026390" /translation="MKICLIDETGAGDGALSVLAARWGLEHDEDNLMALVLTPEHLEL RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRD AFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD ITPRPQVVYLDPMFPHKQKSALVKKEMRVFQSLVGPDLDADGLLEPARLLATKRVVVK RPDYAPPLANVATPNAVVTKGHRFDIYAGTPV" misc_feature complement(3618068..3618817) /gene="yhiQ" /locus_tag="SF3528" /note="16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ; Region: PRK10742" /db_xref="CDD:236749" misc_feature complement(order(3618305..3618307,3618356..3618364, 3618464..3618469,3618515..3618535)) /gene="yhiQ" /locus_tag="SF3528" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(3618825..3620867) /gene="prlC" /locus_tag="SF3529" /db_xref="GeneID:1026377" CDS complement(3618825..3620867) /gene="prlC" /locus_tag="SF3529" /note="Code: E; COG: COG0339" /codon_start=1 /transl_table=11 /product="oligopeptidase A" /protein_id="NP_709278.2" /db_xref="GeneID:1026377" /translation="MTNPLLTPFELPPFSKILPEHVVPAVTKALNDCRENVERVVAQG APYTWENLCQPLAEVDDVLGRIFSPVSHLNSVKNSPELREAYEQTLPLLSEYSTWVGQ HEGLYKAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLS ELGNQYSNNVLDATMGWTKLVTDEAGLAGMPESALAAAKAQAEAKELEGYLLTLDIPS YLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSKVMEEILALRHELAQLLGFE NYAFKSLATKMAENPQQVLDFLTDLAKRARPQGEKELEQLRAFAKAEFGVDELQPWDI AYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERKDVDVWHPDVR FFELYDENNELRGSFYLDLYARENKRGGAWMDGCVGQMRKADGSLQKPVAYLTCNFNR PVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENW CWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFR PDQGAKILETLAEIKKLVAVVPSPSWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADA FSRFEEEGIFNRETGQSFLDNILSRGGSEEPMDLFKRFRGREPQLDAMLEHYGIKG" misc_feature complement(3618828..3620867) /gene="prlC" /locus_tag="SF3529" /note="oligopeptidase A; Provisional; Region: PRK10911" /db_xref="CDD:182832" gene 3621070..3621912 /gene="yhiR" /locus_tag="SF3530" /db_xref="GeneID:1026384" CDS 3621070..3621912 /gene="yhiR" /locus_tag="SF3530" /note="Code: S; COG: COG2961" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709279.2" /db_xref="GeneID:1026384" /translation="MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKDKPFLYLDTHAG AGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEAYINVVKHFNRSGQLRYYPGSPL IARQLLREQDSLQLTELHPSDYPLLRSGFQKDSRARVEKADGFQQLKAKLPPVSRRGL ILIDPPYEMKTDYQAVVSGIAEGYKRFATGTYALWYPVVLRQQIKRMIHDLEATGIRK ILQIELAVLPDSDRRGMTASGMIVINPPWKLEQQMNNVLSWLHSKLVPAGTGHATVSW IVPE" misc_feature 3621070..3621903 /gene="yhiR" /locus_tag="SF3530" /note="23S rRNA A2030 N6-methylase RlmJ [Translation, ribosomal structure and biogenesis]; Region: RlmJ; COG2961" /db_xref="CDD:442201" gene 3621984..3623336 /gene="gor" /locus_tag="SF3531" /db_xref="GeneID:1026369" CDS 3621984..3623336 /gene="gor" /locus_tag="SF3531" /note="Code: C; COG: COG1249" /codon_start=1 /transl_table=11 /product="glutathione reductase" /protein_id="NP_709280.1" /db_xref="GeneID:1026369" /translation="MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVN VGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENV LGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVEYGIDSDGF FALPALPERVAVVGAGYIAVELAGVINGLGAKTHLFVRKHAPLRSFDPMISETLVEVM NAEGPQLHTNAIPKAVVKNADGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAG VKTNEKGYIVVDKYQNTNIEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPDEHL DYSNIPTVVFSHPPIGTVGLTEPQAREQYGDDQVKVYKSSFTAMYTAVTTHRQPCRMK LVCVGPEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAEEFVTMR " misc_feature 3621984..3623333 /gene="gor" /locus_tag="SF3531" /note="glutathione reductase; Validated; Region: PRK06116" /db_xref="CDD:235701" mobile_element complement(3624234..3625001) /mobile_element_type="insertion sequence:IS1" gene complement(3624249..3624644) /gene="insB" /locus_tag="SF3532" /db_xref="GeneID:1026884" CDS complement(3624249..3624644) /gene="insB" /locus_tag="SF3532" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709281.1" /db_xref="GeneID:1026884" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3624252..3624641) /gene="insB" /locus_tag="SF3532" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3624671..3624946) /gene="insA" /locus_tag="SF3533" /db_xref="GeneID:1026421" CDS complement(3624671..3624946) /gene="insA" /locus_tag="SF3533" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709282.1" /db_xref="GeneID:1026421" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3624674..3624925) /gene="insA" /locus_tag="SF3533" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3625017..3625346 /locus_tag="SF3534" /db_xref="GeneID:1026398" CDS 3625017..3625346 /locus_tag="SF3534" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709283.2" /db_xref="GeneID:1026398" /translation="MFKILADETRLGIVLLLSELGELCVCDLCTALDQSQPKISRHLA LLRESGLLLDRKQGKWVHYRLSPHIPAWAAKIIDEAWRCEQEKIQAIVRNLARQNCSG DSKNICS" misc_feature 3625017..3625343 /locus_tag="SF3534" /note="DNA-binding transcriptional repressor ArsR; Provisional; Region: PRK10141" /db_xref="CDD:236654" gene 3625400..3626689 /gene="arsB" /locus_tag="SF3535" /db_xref="GeneID:1026381" CDS 3625400..3626689 /gene="arsB" /locus_tag="SF3535" /note="Code: P; COG: COG1055" /codon_start=1 /transl_table=11 /product="arsenical pump membrane protein" /protein_id="NP_709284.2" /db_xref="GeneID:1026381" /translation="MLLAGAIFVLTIVLVIWQPKGLGIGWSATLGAVLALVTGVVHPG DIPVVWNIVWNATAAFIAVIIISLLLDESGFFEWAALHVSRWGNGRGRLLFTWIVLLG AAVAALFANDGAALILTPIVIAMLLALGFSKGTTLAFVMAAGFIADTASLPLIVSNLV NIVSADFFGLGFREYASVMVPVDIAAIVATLVMLHLYFRKDIPQNYDMALLKSPAEAI KDPATFKTGWVVLLLLLVGFFVLEPLGIPVSAIAAVGALILFVVAKRGHAINTGKVLR GAPWQIVIFSLGMYLVVYGLRNAGLTEYLSGVLNVLADNGLWAATLGTGFLTAFLSSI MNNMPTVLVGALSIDGSTASGVIKEAMVYANVIGCDLGPKITPIGSLATLLWLHVLSQ KNMTISWGYYFRTGIIMTLPVLFVTLAALALRLSFTL" misc_feature 3625403..3626683 /gene="arsB" /locus_tag="SF3535" /note="arsenical efflux pump membrane protein ArsB; Region: PRK15445" /db_xref="CDD:185342" misc_feature order(3625439..3625450,3625469..3625510,3625559..3625612, 3625682..3625732,3625736..3625789,3625808..3625879, 3625943..3625987,3626075..3626113,3626144..3626188, 3626231..3626287,3626357..3626404,3626483..3626542, 3626618..3626656) /gene="arsB" /locus_tag="SF3535" /note="transmembrane helices; other site" /db_xref="CDD:238538" gene 3626702..3627127 /gene="arsC" /locus_tag="SF3536" /db_xref="GeneID:1025373" CDS 3626702..3627127 /gene="arsC" /locus_tag="SF3536" /note="Code: P; COG: COG1393" /codon_start=1 /transl_table=11 /product="arsenate reductase" /protein_id="NP_709285.1" /db_xref="GeneID:1025373" /translation="MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDEL VKLIADMGISVRALLRKNVEPYEELGLAEDKFTDDRLIDFMLQHPILINRPIVVTPLG TRLCRPSEVVLEILPDAQKGAFSKEDGEKVVDEAGKRLK" misc_feature 3626702..3627124 /gene="arsC" /locus_tag="SF3536" /note="arsenate reductase (glutaredoxin); Region: PRK10026" /db_xref="CDD:182200" misc_feature order(3626735..3626737,3626879..3626881,3626981..3626983, 3627020..3627022) /gene="arsC" /locus_tag="SF3536" /note="catalytic residues [active]" /db_xref="CDD:239332" mobile_element 3627228..3627995 /mobile_element_type="insertion sequence:IS1" gene 3627477..3627980 /gene="insB" /locus_tag="SF3537" /db_xref="GeneID:1026389" CDS 3627477..3627980 /gene="insB" /locus_tag="SF3537" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709286.1" /db_xref="GeneID:1026389" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 3627585..3627977 /gene="insB" /locus_tag="SF3537" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3628011..3628967 /locus_tag="SF3538" /db_xref="GeneID:1026366" CDS 3628011..3628967 /locus_tag="SF3538" /note="Code: R; COG: COG0701" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709287.2" /db_xref="GeneID:1026366" /translation="MFLAVELSLLFIVISAGVSLIRQKVPDHKIQQMMGARKGRGYLL AALLGAVTPFCSCSTIPMLRGLLSAKAGFGPTLTFLFVSPLLNPIIVGLMWMTFGWKV TLLYAIIAAGVSVLASIILDSLGFERHIIASKSSSANCCAPAKTSPGTTYTPIKVSCC SPAAKAIENPVVTCCSTKAVVSINPIKLATKDALQQFKDVLPYLLLGVLIGSFIYGFI PSAWIAAHAGADNPFAIPLSAVVGIPLYIRAEAVIPLASVLMTKGMGLGALMALIIGS AGASLTEVILLKSMFRMPMIAAFLTVILGMAILMGYLTQLLF" misc_feature 3628014..3628964 /locus_tag="SF3538" /note="Uncharacterized membrane protein YraQ, UPF0718 family [Function unknown]; Region: YraQ; COG0701" /db_xref="CDD:440465" gene 3629548..3630771 /locus_tag="SF3539" /db_xref="GeneID:1026374" CDS 3629548..3630771 /locus_tag="SF3539" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709288.1" /db_xref="GeneID:1026374" /translation="MSIDFTPGIINTYHGDIYNCTTNTDNVKTPDTPKWPCDNWEEQQ PINSTFSGEGYNPEQFDLAQQQLQQINACHTNTTYTNADYSKVVVQLVSLINNIETIS STPLTQQTQSILNQIHNIRYEKDKDSVCQIIVVVNPEPNNPIITKILVEEGIPERFSV QTVSSDNKNFAGQRADLPTDIRDIQSLYLKMAKLYIEHSKNENRMEALAGCDFIDFNM TGQDMSKLVLTLSKFYFEDLLNINFTDANLFNTIFSHKENPIPKLHKYEQHLDKQING LFSTLLTINDNSLRAKAEIASRIIDFLEAKVVNLSFDDILKYKQEFKKICYKQLQEFT TPSLYNKIQKWATMSKNEFIEFHYETLQPEKISYPFYLKRDLPNEKDINYGVEIEIPS GKRIRLSNHYQNIIP" gene 3630985..3631584 /gene="slp" /locus_tag="SF3540" /db_xref="GeneID:1026329" CDS 3630985..3631584 /gene="slp" /locus_tag="SF3540" /note="Code: M; COG: COG3065" /codon_start=1 /transl_table=11 /product="carbon starvation outer membrane protein" /protein_id="NP_709289.2" /db_xref="GeneID:1026329" /translation="MVLIFVDKDSNMNMTKGALILSLSFLLAACSSIPQNIKGNNQPD IQKSFVAVHNQPGLYVGQQARFGGKVINVINGKTDTLLEIAVLPLDSYAKPDIEANYQ GRLLARQSGFLDPVNYRNHFVTILGTIQGEQPGFINKVPYNFLEVNMQGIQVWHLREV VNTTYNLWDYGYGAFWPEPGWGAPYYTNAVSQVTPELVK" misc_feature 3631021..3631569 /gene="slp" /locus_tag="SF3540" /note="outer membrane lipoprotein, Slp family; Region: slp; TIGR00752" /db_xref="CDD:273251" gene 3631740..3632270 /gene="yhiF" /locus_tag="SF3541" /db_xref="GeneID:1026401" CDS 3631740..3632270 /gene="yhiF" /locus_tag="SF3541" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709290.2" /db_xref="GeneID:1026401" /translation="MFLIITRDTMFFTAMKNILSKGNVVHIQNEEEIDVMLHQNAFVI IDTLMNNVFHSNFLTQIERLKPVHVIVFSPFNIKRCLGKVPVTFVPRTITIIDFVALI NGSYCSVPEANVSLSRKQHQVLSCIANQMTTEDILEKLKISLKTFYCHKHNIMMILNL KRINELVRHQHIDYLV" misc_feature <3631821..3632243 /gene="yhiF" /locus_tag="SF3541" /note="DNA-binding transcriptional regulator, CsgD family [Transcription]; Region: CsgD; COG2771" /db_xref="CDD:442052" misc_feature 3632079..3632246 /gene="yhiF" /locus_tag="SF3541" /note="helix_turn_helix, Lux Regulon; Region: HTH_LUXR; smart00421" /db_xref="CDD:197715" gene complement(3632312..3632958) /gene="yhiD" /locus_tag="SF3542" /pseudo /db_xref="GeneID:1026376" misc_feature complement(3632312..3632958) /gene="yhiD" /locus_tag="SF3542" /note="Similar to Escherichia coli K12 transport ATPase gi: 1789924 (216 aa). BLAST with identity of 99% in 215 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(3633022..3633360) /gene="hdeB" /locus_tag="SF3543" /db_xref="GeneID:1026885" CDS complement(3633022..3633360) /gene="hdeB" /locus_tag="SF3543" /codon_start=1 /transl_table=11 /product="acid-resistance protein" /protein_id="NP_709291.1" /db_xref="GeneID:1026885" /translation="MGYKMNISSLRKAFIFMGAVAALSLVNAQSALAANESAKDMTCQ EFIDLNPKAMTPVAWWMLHEETVYKGGDTVTLNETDLTQIPKVIEYCKKNPQKNLYTF KNQASNDLPN" misc_feature complement(3633025..3633330) /gene="hdeB" /locus_tag="SF3543" /note="acid-activated periplasmic chaperone HdeB; Region: hdeB; PRK11566" /db_xref="CDD:183204" gene complement(3633464..3633796) /gene="hdeA" /locus_tag="SF3544" /db_xref="GeneID:1026387" CDS complement(3633464..3633796) /gene="hdeA" /locus_tag="SF3544" /codon_start=1 /transl_table=11 /product="acid stress chaperone HdeA" /protein_id="NP_709292.1" /db_xref="GeneID:1026387" /translation="MKKVLGVILGGLLLLPVVSNAADAQKAADNKKPVNSWTCEDFLA VDESFQPTAVGFAEALNNKDKPEDAVLDVQGIATVTPAIVQACTQDKQANFKDKVKGE WDKIKKDM" misc_feature complement(3633476..>3633742) /gene="hdeA" /locus_tag="SF3544" /note="acid-activated periplasmic chaperone HdeA; Region: PRK10208" /db_xref="CDD:182307" gene 3634051..3634623 /gene="hdeD" /locus_tag="SF3545" /db_xref="GeneID:1026394" CDS 3634051..3634623 /gene="hdeD" /locus_tag="SF3545" /note="Code: S; COG: COG3247" /codon_start=1 /transl_table=11 /product="acid-resistance membrane protein" /protein_id="NP_709293.2" /db_xref="GeneID:1026394" /translation="MLYIDKATILKFDLEMLKKHRRAIQFIAVLLFIVGLLCISFPFV SGDILSTVVGALLICSGIALIVGLFSNRSHNFWPVLSGFLVAVAYLLIGYFFIRAPEL GIFAIAAFIAGLFCVAGVIRLMSWYRQRSMKGSWLQLVIGVLDIVIAWIFLGATPMVS VTLVSTLVGIELIFSAASLFSFASLFVKQQ" misc_feature 3634051..3634620 /gene="hdeD" /locus_tag="SF3545" /note="HdeD family acid-resistance protein; Region: PRK10209" /db_xref="CDD:182308" gene 3635422..3635949 /gene="yhiE" /locus_tag="SF3546" /db_xref="GeneID:1026396" CDS 3635422..3635949 /gene="yhiE" /locus_tag="SF3546" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709294.2" /db_xref="GeneID:1026396" /translation="MIFLMTKDSFLLQGFWQLKDNHEMIKINSLSEIKKVGNKPFKVI IDTYHNHILDEEAIKFLEKLDAERIIVLAPYHISKLKAKAPIYFVSRKESIKNLLEIT YGKHLPHKNSQLCFSHNQFKIMQLILKNKNESNITSTLNISQQTLKIQKFNIMYKLKL RRMSDIVTLGITSYF" gene complement(3635950..3636228) /locus_tag="SF3546a" /db_xref="GeneID:16608363" CDS complement(3635950..3636228) /locus_tag="SF3546a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439288.1" /db_xref="GeneID:16608363" /translation="MRDLQTSGIVGLSASKVGYRHSDRHGEVNDKKNVAVLPTVPASI RATKGSTGGYTYQGNQVVLASPLVITGGNEISICIPRHASHQFQLLMS" gene 3636288..3637192 /gene="yhiU" /locus_tag="SF3547" /pseudo /db_xref="GeneID:1026403" misc_feature 3636288..3637192 /gene="yhiU" /locus_tag="SF3547" /note="Similar to Escherichia coli K12 membrane protein gi: 1789929 (386 aa). BLAST with identity of 99% in 302 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element complement(3637331..3638098) /mobile_element_type="insertion sequence:IS1" gene complement(3637346..3637741) /gene="insB" /locus_tag="SF3548" /db_xref="GeneID:1026353" CDS complement(3637346..3637741) /gene="insB" /locus_tag="SF3548" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709295.1" /db_xref="GeneID:1026353" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYEPRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3637349..3637738) /gene="insB" /locus_tag="SF3548" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3637768..3638043) /gene="insA" /locus_tag="SF3549" /db_xref="GeneID:1026406" CDS complement(3637768..3638043) /gene="insA" /locus_tag="SF3549" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709296.1" /db_xref="GeneID:1026406" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3637771..3638022) /gene="insA" /locus_tag="SF3549" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3638314..3639963 /gene="treF" /locus_tag="SF3550" /db_xref="GeneID:1024626" CDS 3638314..3639963 /gene="treF" /locus_tag="SF3550" /note="Code: G; COG: COG1626" /codon_start=1 /transl_table=11 /product="trehalase" /protein_id="NP_709297.1" /db_xref="GeneID:1024626" /translation="MLNQKIQNPNPDELMIEVDLCYELDPYELKLDEMIEAEPEPEMI EGLPASDALTPADRYLELFEHVQSAKIFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD FDLRKFVENHFWLPEVYSSEYVSDPQNSLKEHIDQLWPVLTREPQDHIPWSSLLALPQ SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLIPNQAYRHVVRMP DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD TGRLASIRTTQFIPIDLNAFLFKLESAIANISALKGEKETEALFRQKASARRDAVNRY LWDDENGIYRDYDWRREQLALFSAAAIVPLYVGMANHEQADRLANAVRSRLLTPGGIL ASEYETGEQWDKPNGWAPLQWMAIQGFKMYGDDLLGDEIARSWLKTVNQFYLEQHKMI EKYHIADGVPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP" misc_feature 3638314..3639960 /gene="treF" /locus_tag="SF3550" /note="alpha,alpha-trehalase TreF; Region: treF; PRK13270" /db_xref="CDD:183934" mobile_element 3640023..3641449 /mobile_element_type="insertion sequence:IS4" gene 3640090..3641435 /locus_tag="SF3551" /pseudo /db_xref="GeneID:1026386" misc_feature 3640090..3641435 /locus_tag="SF3551" /note="Similar to Shigella flexneri conserved hypothetical protein ref: NP_085397.1 (448 aa). BLAST with identity of 77% in 448 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(3641451..3642053) /gene="yhjB" /locus_tag="SF3552" /db_xref="GeneID:1026347" CDS complement(3641451..3642053) /gene="yhjB" /locus_tag="SF3552" /note="Code: TK; COG: COG2197" /codon_start=1 /transl_table=11 /product="regulator" /protein_id="NP_709298.1" /db_xref="GeneID:1026347" /translation="MQIVMFDRQSIFIHGIKISLQQRIPGVSIQGVSQADELWQKLES YPEALVMLDGDQDGEFCYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVP RDSTVETFALAVNSAAMGMMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNK EIGRALNISTGTVKAHLESLYRRLEVKNRTQAAMMLNISS" misc_feature complement(3641490..3642047) /gene="yhjB" /locus_tag="SF3552" /note="fimbriae biosynthesis transcriptional regulator FimZ; Region: PRK09935" /db_xref="CDD:182154" misc_feature complement(3641466..>3641630) /gene="yhjB" /locus_tag="SF3552" /note="DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription]; Region: CitB; COG2197" /db_xref="CDD:441799" gene 3642501..3643472 /gene="yhjC" /locus_tag="SF3553" /db_xref="GeneID:1026886" CDS 3642501..3643472 /gene="yhjC" /locus_tag="SF3553" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="LysR family transcriptional regulator" /protein_id="NP_709299.1" /db_xref="GeneID:1026886" /translation="MLEKTINNAICALLFRCEQQSVKEMDKIHAMQLFIKVAELESFS RAADFFALPKGSVSRQIQALEHQLGTQLLQRTTRRVKLTPEGMTYYQRAKDVLSNLSE LDGLFQQDATSISGKLRIDIPSGIAKNLLLPRLSEFLYQHPGIELELSSHNRPVDILH DGFDCVIRTGALPEDGVIARPLGKLTMVNCASPHYLTRFGYPQSPDDLTSHAIVRYTP HLGVHPLGFEVASVNGVQWFKSGGMLTVNSSENYLAAGLAGLGIIQIPRIAVREALRA GRLIEVLPGYRAEPLSLSLVYPQRRELSRRVNLFMQWLAGVMKEHLD" misc_feature 3642582..3642758 /gene="yhjC" /locus_tag="SF3553" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature 3642846..3643451 /gene="yhjC" /locus_tag="SF3553" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472" /db_xref="CDD:176161" misc_feature order(3642876..3642878,3642888..3642890,3643005..3643007, 3643047..3643049,3643053..3643055,3643245..3643247, 3643296..3643298,3643377..3643379) /gene="yhjC" /locus_tag="SF3553" /note="putative effector binding pocket [active]" /db_xref="CDD:176161" misc_feature order(3642879..3642884,3642894..3642899,3642903..3642908, 3642915..3642917,3642927..3642929,3642933..3642953, 3643134..3643136,3643227..3643241,3643260..3643265, 3643272..3643274) /gene="yhjC" /locus_tag="SF3553" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176161" gene 3643521..3644534 /gene="yhjD" /locus_tag="SF3554" /db_xref="GeneID:1026354" CDS 3643521..3644534 /gene="yhjD" /locus_tag="SF3554" /note="Code: J; COG: COG1295" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709300.1" /db_xref="GeneID:1026354" /translation="MTQENEIKRPTQDLEHEPIKQLDNSEKGGKVSQALETVTTTAEK VQRQPVIAHLIRATERFNDRLGNQFGAAITYFSFLSMIPILMVSFAAGGFVLASHPML LQDIFDKILQNISDPTLAATLKNTINTAVQQRTTVGLVGLAVALYSGINWMGNLREAI RAQSRDVWERSPQDQEKFWVKYLRDFISLIGLLIALIVTLSITSVAGSAQQMIISALH LNSIEWLKPTWRLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFLAAIGFEVI KIVMTYTLPSLMKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDPRMPGK TQP" misc_feature 3643674..3644498 /gene="yhjD" /locus_tag="SF3554" /note="inner membrane protein YhjD; Region: TIGR00766" /db_xref="CDD:188082" gene 3644945..3646267 /gene="yhjE" /locus_tag="SF3555" /db_xref="GeneID:1026358" CDS 3644945..3646267 /gene="yhjE" /locus_tag="SF3555" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709301.1" /db_xref="GeneID:1026358" /translation="MQATATTLDHEQEYTPINSRNKVLVASLIGTAIEFFDFYIYATA AVIVFPHIFFPQGDPTAATLQSLATFAIAFVARPIGSAVFGHFGDRVGRKATLVASLL TMGISTVVIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA LYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS LHESPVFEKVAKAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTFST AAAPVGLGLPRNEVLWMLMMAVIGFGVMVPVAGLLADAFGRRKSMVIITTLIILFALF AFNPLLGSGNPILVFAFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSI LGASVAPYIAAWLQANYGLGAVGLYLAAMAGLTLIALLLTHETRHQSL" misc_feature 3645008..3646237 /gene="yhjE" /locus_tag="SF3555" /note="Shikimate transporter and similar proteins of the Major Facilitator Superfamily; Region: MFS_ShiA_like; cd17369" /db_xref="CDD:340927" misc_feature order(3645044..3645049,3645056..3645061,3645068..3645070, 3645185..3645187,3645359..3645364,3645368..3645376, 3645383..3645385,3645443..3645445,3645452..3645457, 3645464..3645466,3645713..3645715,3645722..3645727, 3645734..3645742,3645749..3645751,3645845..3645847, 3645857..3645859,3646016..3646021,3646031..3646033, 3646043..3646045,3646091..3646093,3646100..3646105, 3646112..3646117,3646124..3646126) /gene="yhjE" /locus_tag="SF3555" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340927" gene complement(3646449..3648509) /gene="yhjG" /locus_tag="SF3556" /db_xref="GeneID:1026402" CDS complement(3646449..3648509) /gene="yhjG" /locus_tag="SF3556" /note="Code: M; COG: COG2982" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709302.2" /db_xref="GeneID:1026402" /translation="MSKAGKITAAISGAFLLLIVVAIILIATFDWNRLKPTINQKVSA ELNRPFAIRGNLGVVWERQKQETGWRSWVPWPHVHAEDIILGNPPDIPEVTMVHLPRV EATLAPLALLTKTVWLPWIKLEKPDARLIRLSEKNNNWTFNLANDDNKDANAKPSAWS FRLDNILFDQGRIAIDDKVSKADLEIFVDPLGKPLPFSEVTGSKGKADKEKVGDYIFG LKAQGRYNGEPLTGTGKIGGMLALRGEGTPFPVQADFRSGNTRVAFDGVVNDPMKMGG VDLRLKFSGDSLGDLYELTGVLLPDTPPFETDGRLVAKIDTEKSSVFDYRGFNGRIGD SDIHGSLVYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKGAEKSKRSEQKKGEKS VQPAGKVLPYDRFETDKWDVMDADVRFKGRRIEHGSSLPISDLSTHIILKNADLRLQP LKFGMAGGSIAANIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGEMNGDAE LRGSGNSVAALLGNSNGNLKLLMNDGLVSRNLMEIVGLNVGNYIVGAIFGDDEVRVNC AAANLNIANGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP LYVRGTFKNPQAGVKAGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILS QMKK" misc_feature complement(3646761..3648509) /gene="yhjG" /locus_tag="SF3556" /note="AsmA family; Region: AsmA; pfam05170" /db_xref="CDD:428346" gene complement(3648579..3649346) /gene="yhjH" /locus_tag="SF3558" /db_xref="GeneID:1026379" CDS complement(3648579..3649346) /gene="yhjH" /locus_tag="SF3558" /note="Code: T; COG: COG2200" /codon_start=1 /transl_table=11 /product="cyclic-di-GMP phosphodiesterase" /protein_id="NP_709303.2" /db_xref="GeneID:1026379" /translation="MIRQVIQRISNPEASIESLQERRFWLQCERAYTWQPIYQTCGRL MAVELLTVVTHPLNPSQRLPPDRYFTEITVSHRMEVVKEQIDLLAQKADFFVEHGLLA SVNIDGPTLIALRQQPKILRQIERLPWLRFELVEHIRLPKDSTFASMCEFGPLWLDDF GTGMANFSALSEVRYDYIKIARELFVMLRQSPEGRTLFSQLLHLMNRYCRGVIVEGVE TPEEWRDVQNSPAFAAQGWFLSRPAPMETLNTAVLAL" misc_feature complement(3648582..3649346) /gene="yhjH" /locus_tag="SF3558" /note="cyclic-di-GMP phosphodiesterase; Provisional; Region: PRK11596" /db_xref="CDD:183222" gene 3649359..3650507 /gene="kdgK" /locus_tag="SF3557" /db_xref="GeneID:1026343" CDS 3649359..3650507 /gene="kdgK" /locus_tag="SF3557" /note="Code: G; COG: COG0524" /codon_start=1 /transl_table=11 /product="ketodeoxygluconokinase" /protein_id="NP_709304.2" /db_xref="GeneID:1026343" /translation="MFKSDAARTRQRLSARKGRTLPPGRGKFPHSTTESFRNTFWLKK IMEHCFNMVDQQTTTAQTNANFLQIRFTTMSKKIAVIGECMIELSEKGADVKRGFGGD TLNTSVYIARQVDPAALTVHYVTALGTDSFSQQMLDAWHGENVDTSLTQRMENRLPGL YYIETDSTGERTFYYWRNEAAAKFWLASEQSAAICEELANFDYLYLSGISLAILSPTS REKLLSLLRECRAKGGKVIFDNNYRPRLWASKEETQQVYQQMLECTDIAFLTLDDEDA LWGQQPVEDVIARTHNAGVKEVVVKRGADSCLVSIAGEALVDVPAVKLPKEKVIDTTA AGDSFSAGYLAVRLTGGSAENAAKRGHLTASTVIQYRGAIIPREAMPA" misc_feature 3649587..3650480 /gene="kdgK" /locus_tag="SF3557" /note="2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166" /db_xref="CDD:238571" misc_feature order(3649659..3649664,3649671..3649673,3649839..3649841, 3649881..3649883,3649887..3649889,3649983..3649985, 3650085..3650087,3650358..3650360,3650367..3650369, 3650475..3650477) /gene="kdgK" /locus_tag="SF3557" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238571" misc_feature order(3650259..3650261,3650274..3650276,3650331..3650333, 3650358..3650366,3650373..3650375,3650439..3650441, 3650451..3650453) /gene="kdgK" /locus_tag="SF3557" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238571" gene complement(3650603..3652099) /gene="yhjJ" /locus_tag="SF3559" /db_xref="GeneID:1026346" CDS complement(3650603..3652099) /gene="yhjJ" /locus_tag="SF3559" /note="Code: R; COG: COG0612" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709305.1" /db_xref="GeneID:1026346" /translation="MQGIKIRLLAGGLLMMATAGYVQADALQPDPAWQQGTLSNGLQW QVLTTPQRPSDRVEIRLLVNTGSLAESTQQSGYSHAIPRIALTQSGGLDAAQARSLWQ QGIDPKRPMPPVIVSYDTTLFNLSLPNNRNDLLKEALSYLANATGKLTITPETINHAL QSQDMVATWPADTKEGWWRYRLKGSTLLGHDPADPLKQPVEAEKIKDFYQKWYTPDAM TLLVVGNVDARSVVDQINKTFGELKGKRETPAPVPTLSPLRAEAVSIMTDAVRQDRLS IMWDTPWQPIRESAALLRYWRADLAREALFWHVQQALSASDSKDIGLGFDCRVLYLRA QCAINIESPNDKLNSNLNLVARELAKVRDKGLPEEEFNALVAQKKLELQKLFAAYARA DTDILMGQRMRSLQNQVVDIAPEQYQKLRQDFLNSLTVEMLNQDLRQQLSNDMALILL QPKGEPEFNMKALQAAWDQIMAPSTAAATTSVATDDVHPEVTDIPPAQ" misc_feature complement(3650729..3652039) /gene="yhjJ" /locus_tag="SF3559" /note="Predicted Zn-dependent peptidase, M16 family [General function prediction only]; Region: PqqL; COG0612" /db_xref="CDD:440377" gene complement(3652320..3653606) /gene="dctA" /locus_tag="SF3560" /db_xref="GeneID:1026337" CDS complement(3652320..3653606) /gene="dctA" /locus_tag="SF3560" /note="Code: C; COG: COG1301" /codon_start=1 /transl_table=11 /product="C4-dicarboxylate transporter DctA" /protein_id="NP_709306.1" /db_xref="GeneID:1026337" /translation="MKTSLFKSLYFQVLTAIAIGILLGHFYPEIGEQMKPLGDGFVKL IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPG AGMNVDPATLDAKAVAVYADQAKDQGIVAFIMDVIPASVIGAFASGNILQVLLFAVLF GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGALGAMAFTIGKYGVGTLVQ LGQLIICFYITCILFVVLVLGSIAKATGFSIFKFIRYIREELLIVLGTSSSESALPRM LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSQMDIVHQITLLI VLLLSSKGAAGVTGSGFIVLAATLSAVGHLPVAGLALILGIDRFMSEARALTNLVGNG VATIVVAKWVKELDHKKLDDVLNNRAPDGKTHELSS" misc_feature complement(3652326..3653606) /gene="dctA" /locus_tag="SF3560" /note="C4-dicarboxylate transporter DctA; Reviewed; Region: PRK01663" /db_xref="CDD:234968" gene complement(3653792..3655741) /gene="yhjK" /locus_tag="SF3561" /db_xref="GeneID:1026352" CDS complement(3653792..3655741) /gene="yhjK" /locus_tag="SF3561" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709307.4" /db_xref="GeneID:1026352" /translation="MVAAVVLVFVFIFCTVLLFHLVQQNRYNTATQLESIARSVREPL SSAILKGDIPEAEAILASIKPAGVVSRADVVLPNQFQALRKSFIPERPVPVMVTRLFE LPVQISLGVYSLERPANPQPIAYLVLQADSFRMYKFVMSTLSTLVTIYLLLSLILTVA ISWCINRLILHPLRNIARELNAIPAQELVGHQLALPRLHQDDEIGMLVRSYNLNQQLL QRHYEEQNENAMRFPVSDLPNKALLMEMLEQVVARKQTTALMIITCETLRDTAGVLKE AQREILLLTLVEKLKSVLSPRMILAQISGYDFAVIANGVQEPWHAITLGQQVLTIMSE RLPIERIQLRPHCSIGVAMFYGDLTAEQLYSRAISAAFTARHKGKNQIQFFDPQQMEA AQKRLTEESDILNTLENHQFAIWLQPQVEMTSGKLVSAEVLLRIQQPDGSWDLPDGLI DRIECCGLMVTVGHWVLEESCRLLAAWQERGIMLPLSVNLSALQLMHPNMVADMLELL TRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRVALDDFGMGYAGLRQLQHM KSLPIDVLKIDKMFVEGLPEDSSMIAAIIMLAQSLNLQMIAEGVETEAQRDWLAKAGV GIAQGFLFARPLPIEIFEESYLEEK" misc_feature complement(3653795..3655708) /gene="yhjK" /locus_tag="SF3561" /note="putative diguanylate cyclase; Provisional; Region: PRK13561" /db_xref="CDD:184143" gene complement(3655862..3658219) /gene="yhjL" /locus_tag="SF3562" /pseudo /db_xref="GeneID:1026332" misc_feature complement(3655862..3658219) /gene="yhjL" /locus_tag="SF3562" /note="Similar to Escherichia coli K12 oxidoreductase subunit gi: 2367239 (1167 aa). BLAST with identity of 98% in 785 aa. This CDS contains deletion. The sequence has been checked and is believed to be correct." /pseudo gene complement(3658173..3659279) /locus_tag="SF3561a" /db_xref="GeneID:16608364" CDS complement(3658173..3659279) /locus_tag="SF3561a" /codon_start=1 /transl_table=11 /product="endonuclease III" /protein_id="YP_008439289.1" /db_xref="GeneID:16608364" /translation="MNVLRSGIVTMLLLAAFSVQAACTWPAWEQFKKDYISQEGRVID PSDARKITTSEGQSYGMFFALAANDRAAFDNILDWTQNNLAQGSLKERLPAWLWGKKE NSKWEVLDSNSASDGDVWMAWSLLEAGRLWKEQRYTDIGSALLKRIAREEVVTVPGLG SMLLPGKVGFAEDNSWRFNPSYMPPTLAQYFTRFGAPWTTLRETNQHLLLETAPKGFS PDWVRYEKDKGWQLKAEKTLISSYDAIRVYMWVGMMPDSDPQKARMLNRFKPMATFTE KNGYPPEKVDVATGKAQGKGPVGFSAAMLPFLQNRDAQAVQRQRVADNFPGSDTYYNY VLTLFGQGWDQHRFRFSTKGELLPDWGQECANSH" misc_feature complement(3658176..3659279) /locus_tag="SF3561a" /note="cellulase; Region: PRK11097" /db_xref="CDD:236844" gene complement(3659286..3661595) /gene="yhjN" /locus_tag="SF3563" /db_xref="GeneID:1026356" CDS complement(3659286..3661595) /gene="yhjN" /locus_tag="SF3563" /codon_start=1 /transl_table=11 /product="cellulose synthase regulator protein" /protein_id="NP_709308.2" /db_xref="GeneID:1026356" /translation="MAMGMSAFPSFMTQATPATQPLINAEPAVAAQTEQNPQVGQVMS GEQGADAPIVAQNGPSRDVKLTFAQIAPPPGSMVLRGINPNGSIEFGMRSDEVVTKAM LNFEYTPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQMPINPLFITDFNRV RLEFVGHYQDVCENPASTTLWLDVGRSSGLDLTYQTLNVKNDLSHFPVPFFDPRDNRT NTLPMVFAGAPDVGLQQASAIVASWFGSRSGWRGQNFPVLYNQLPDRNAIVFATNDKR PDFLRDHPAVKAPVIEMINHPQNPYVKLLVVFGRDDKDLLQAAKGIAQGNILFRGESV VVNEVKPLLPRKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAAINVSLNLPPDL YLMRSTGIDMDINYRYTMPPVKDSSRMDISLNNQFLQSFNLSSKQEANRLLLRIPVLQ GLLDGKTDVSIPALKLGATNQLRFDFEYMNPMPGGSVDNCITFQPVQNHVVIGDDSTI DFSKYYHFIPMPDLRAFANAGFPFSRMADLSQTITVMPKAPNEAQMETLLNTVGFIGA QTGFPAINLTVTDDGSTIQGKDADIMIIGGIPDKLKDDKQIDLLVQATESWVKTPMRQ TPFPGIVPDESDRAAETQSTLTSSGAMAAVIGFQSPYNDQRSVIALLADSPRGYEMLN DAVNDSGKRATMFGSVAVIRESGINSLRVGDVYYVGHLPWFERLWYALANHPILLAVL ATISVILLAWVLWRLLRIISRRRLNPDNE" misc_feature complement(3659337..3661595) /gene="yhjN" /locus_tag="SF3563" /note="cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB; Region: PRK11114" /db_xref="CDD:236851" gene complement(3661636..3664301) /gene="yhjO" /locus_tag="SF3564" /pseudo /db_xref="GeneID:1026345" misc_feature complement(3661636..3664301) /gene="yhjO" /locus_tag="SF3564" /note="Similar to Escherichia coli K12 cellulose synthase gi: 2367240 (889 aa). BLAST with identity of 98% in 888 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(3664250..3665002) /gene="yhjQ" /locus_tag="SF3565" /db_xref="GeneID:1026348" CDS complement(3664250..3665002) /gene="yhjQ" /locus_tag="SF3565" /note="Code: D; COG: COG1192" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="NP_709309.1" /db_xref="GeneID:1026348" /translation="MAVLGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLL RLSFNVDFTHRQGWARAMLDGQDWRDAGLRYTSQLDLLPFGQLSIEEQENPQHWQTRL SDICSGLQQLKASGRYQWILIDLPRDASQITHQLLSLCEHSLAIVNVDANCHIRLHQQ ALPDGAHILINDFRIGSQVQDDIYQLWLQSQRRLLPMLIHRDEAMAECLAAKQPVGEY RSDALAAEEILTLANWCLLNYSGLKTPVGSAS" misc_feature complement(3664253..3665002) /gene="yhjQ" /locus_tag="SF3565" /note="cellulose biosynthesis protein BcsQ; Region: PRK10037" /db_xref="CDD:182204" misc_feature complement(order(3664487..3664492,3664631..3664633, 3664868..3664870,3664952..3664969)) /gene="yhjQ" /locus_tag="SF3565" /note="active site" /db_xref="CDD:349751" mobile_element complement(3665161..3665928) /mobile_element_type="insertion sequence:IS1" gene complement(3665176..3665571) /gene="insB" /locus_tag="SF3566" /db_xref="GeneID:1026372" CDS complement(3665176..3665571) /gene="insB" /locus_tag="SF3566" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709310.1" /db_xref="GeneID:1026372" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3665179..3665568) /gene="insB" /locus_tag="SF3566" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3665598..3665873) /gene="insA" /locus_tag="SF3567" /db_xref="GeneID:1026375" CDS complement(3665598..3665873) /gene="insA" /locus_tag="SF3567" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709311.1" /db_xref="GeneID:1026375" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3665601..3665852) /gene="insA" /locus_tag="SF3567" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3666071..3667642 /gene="yhjS" /locus_tag="SF3568" /db_xref="GeneID:1026299" CDS 3666071..3667642 /gene="yhjS" /locus_tag="SF3568" /codon_start=1 /transl_table=11 /product="cellulose biosynthesis protein BcsE" /protein_id="NP_709312.1" /db_xref="GeneID:1026299" /translation="MRDIVDPVFSIGISSLWDELRHMPAGGVWWFNVDRHEDAISLAN QTIASQAETAHVAVISMDSDPAKIFQLDDSQGPEKIKLFSMLNHEKGLYYLARDLQCS IDPHNYLFILVCANNAWQNIPAERLRSWLDKMNKWSRLNHCSLLVINPGNNNDKQFSL LLEEYRSLFGLASLRFQGDQHLLDIAFWCNEKGVSARQQLSVQQQNGIWTLVQSEEAE IQPRSDEKRILSNVAVLEGAPPLSEHWQLFNNNEVLFNEARTAQAATVVFSLQQNAQI EPLARSIHTLRRQRGSAMKILVRENTASLRATDERLLLACGANMVIPWNAPLSRCLTM IESVQGQKFSRYVPEDITTLLSMTQPLKLRGFQKWDVFCNAVNNMMNNPLLPAHGKGV LVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRINDLDTALNHIFPLP TGDIFSNRMVWFEDDQISAELVQMRLLAPEQWGMPLPLTQSSKPVINAEHDGRHWRRI PEPMRLLDDAVERSS" misc_feature 3666083..3667639 /gene="yhjS" /locus_tag="SF3568" /note="cellulose biosynthesis protein BcsE; Provisional; Region: PRK15045" /db_xref="CDD:185005" gene 3667639..3667830 /gene="yhjT" /locus_tag="SF3569" /db_xref="GeneID:1026364" CDS 3667639..3667830 /gene="yhjT" /locus_tag="SF3569" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709313.1" /db_xref="GeneID:1026364" /translation="MMTISDIIEIIIVCALIFFPLGYLARHSLRRIRDTLRLFFAKPR YVKPAGTLRRTEKARATKK" misc_feature 3667675..3667827 /gene="yhjT" /locus_tag="SF3569" /note="celllulose biosynthesis operon protein BcsF/YhjT; Region: cellullose_BcsF; TIGR03493" /db_xref="CDD:274605" gene 3667827..3669506 /gene="yhjU" /locus_tag="SF3570" /db_xref="GeneID:1026365" CDS 3667827..3669506 /gene="yhjU" /locus_tag="SF3570" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709314.1" /db_xref="GeneID:1026365" /translation="MTQFTQNTAMPSSLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP LLNLVFAAFLLMPIPRYSLHRLRHWIALPIGFALFWHDIWLPGPESIMSQGSQVAGFS TDYLIDLVTRFINWQMIGAIFVLLVAWLFLSQWIRITVFVVAILLWLNVLTLAGPSFS LWPAGQPTTTVTTTGGNAAATVAATGGAPVVGDMPAQTAPPTTANLNAWLNNFYNAEA KRKSTFPSSLPADAQPFELLVINICSLSWSDIEAAGLMSHPLWSHFDIDFKNFNSATS YSGPAAIRLLRASCGQTSHTNLYQPANNDCYLFDNLSKLGFTQHLMMGHNGQFGGFLK EVRENGGMQTELMDQTNLPVILLGFDGSPVYDDTAVLNRWLDVTEKDKNSRSATFYNT LPLHDGNHYPGVSKTADYKARAQKFFDELDAFFTELEKSGRKVMVVVVPEHGGALKGD RMQVSGLRDIPSPSITDVPVGVKFFGMKAPHQGAPIVIDQPSSFLAISDLVVRVLDGK IFTEDNVDWKKLTSGLPQTAPVSENSNAVVIQYQDKPYVRLNGGDWVPYPQ" misc_feature 3667896..3669488 /gene="yhjU" /locus_tag="SF3570" /note="Cellulose biosynthesis protein BcsG; Region: CBP_BcsG; pfam11658" /db_xref="CDD:463320" gene complement(3669593..3669868) /locus_tag="SF3571" /db_xref="GeneID:1026361" CDS complement(3669593..3669868) /locus_tag="SF3571" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709315.1" /db_xref="GeneID:1026361" /translation="MRRNVAGALSLVALVAGERKPPHVAGMHLTTSRGLILNPNNSRI AAKRWHYNTGGYMTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK" misc_feature complement(3669596..3669700) /locus_tag="SF3571" /note="Toxin Ldr, type I toxin-antitoxin system; Region: Ldr_toxin; pfam13940" /db_xref="CDD:404772" gene complement(3670076..3670351) /locus_tag="SF3572" /db_xref="GeneID:1026349" CDS complement(3670076..3670351) /locus_tag="SF3572" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709316.1" /db_xref="GeneID:1026349" /translation="MRRNVAGALSLVALVAGERKPPHVAGMHLTTSRGPFLNLNNSRI AAKRCHYNTGGYMTLAELGMAFWHDLAAPVIAGILASMIVNWLNKRK" misc_feature complement(3670079..3670183) /locus_tag="SF3572" /note="Toxin Ldr, type I toxin-antitoxin system; Region: Ldr_toxin; pfam13940" /db_xref="CDD:404772" gene complement(3670559..3670801) /locus_tag="SF3573" /db_xref="GeneID:1026887" CDS complement(3670559..3670801) /locus_tag="SF3573" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709317.1" /db_xref="GeneID:1026887" /translation="MALVAGERKPPHVAGMHLTTPRGPFLHPNNTRIAAKRCHYNTGG YMTFAELGMAFWHDLAAPVIAGILASMIVNWLNKRK" misc_feature complement(3670562..3670666) /locus_tag="SF3573" /note="Toxin Ldr, type I toxin-antitoxin system; Region: Ldr_toxin; pfam13940" /db_xref="CDD:404772" gene 3671625..3672896 /gene="yhjV" /locus_tag="SF3574" /db_xref="GeneID:1026359" CDS 3671625..3672896 /gene="yhjV" /locus_tag="SF3574" /note="Code: E; COG: COG0814" /codon_start=1 /transl_table=11 /product="transporter protein" /protein_id="NP_709318.2" /db_xref="GeneID:1026359" /translation="MQHNTLSKHNQKLPFTRYDFGWVLLCIGMAIGAGTVLMPVQIGL KGIWVFITAAIIAYPVTWVVQDIYLKTLSESDSCNDYTDIISHYLGKNWGIFLGVIYF LMIIHGIFIYSLSVVFDSASYLKTFGLTDADLSQSLLYKVAIFAVLIAIASGGERLLF KISGPMVVVKVGIIVVFGFAMIPHWNFANITAFPQASVFFRDVLLTIPFCFFSAVFIQ VLNPMNIAYRKREADKVLATRLALRTHRISYITLIAVILFFAFSFTFSISHEEAVSAF EQNISALALAAQVIPGHIIHITSTVLNIFAVLTAFFGIYLGFHEAIKGIILNLLSRII DTKKINSRMLTLAICAFIVITLTIWVSFRVSVLVFFQLGSPLYGIVSCLIPFFLIYKV AQLEKLRGFKAWLILLYGILLCLSPLLKLIE" misc_feature 3671667..3672857 /gene="yhjV" /locus_tag="SF3574" /note="Solute carrier families 5 and 6-like; solute binding domain; Region: SLC5-6-like_sbd; cl00456" /db_xref="CDD:444915" gene complement(3672926..3673930) /gene="dppF" /locus_tag="SF3575" /db_xref="GeneID:1026367" CDS complement(3672926..3673930) /gene="dppF" /locus_tag="SF3575" /note="Code: EP; COG: COG1124" /codon_start=1 /transl_table=11 /product="dipeptide transporter ATP-binding protein" /protein_id="NP_709319.1" /db_xref="GeneID:1026367" /translation="MSTQEATSQQPLLQAIDLKKHYPVKKGMFVPERLVKALDGVSFN LERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPQAQKLRRQKIQ IVFQNPYGSLNPRKKVGQILEEPLLINTSLSKEQRREKALSMMAKVGLKTEHYDRYPH MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQELGLSYVFI SHDLSVVEHIADEVMVMYLGRCVEKGTKDQIFNNPRHPYTQALLSATPRLNPDDRRER IKLTGELPSPLNPPPGCAFNARCRRRFGPCTQLQPQLKDYGGQLVACFAVDQDENPQR " misc_feature complement(3672929..3673909) /gene="dppF" /locus_tag="SF3575" /note="dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308" /db_xref="CDD:236898" misc_feature complement(3673745..3673768) /gene="dppF" /locus_tag="SF3575" /note="Walker A/P-loop; other site" /db_xref="CDD:213224" misc_feature complement(order(3673271..3673273,3673370..3673375, 3673613..3673615,3673742..3673750,3673754..3673759)) /gene="dppF" /locus_tag="SF3575" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213224" misc_feature complement(3673613..3673624) /gene="dppF" /locus_tag="SF3575" /note="Q-loop/lid; other site" /db_xref="CDD:213224" misc_feature complement(3673418..3673447) /gene="dppF" /locus_tag="SF3575" /note="ABC transporter signature motif; other site" /db_xref="CDD:213224" misc_feature complement(3673370..3673387) /gene="dppF" /locus_tag="SF3575" /note="Walker B; other site" /db_xref="CDD:213224" misc_feature complement(3673352..3673363) /gene="dppF" /locus_tag="SF3575" /note="D-loop; other site" /db_xref="CDD:213224" misc_feature complement(3673265..3673285) /gene="dppF" /locus_tag="SF3575" /note="H-loop/switch region; other site" /db_xref="CDD:213224" gene complement(3673927..3674910) /gene="dppD" /locus_tag="SF3576" /db_xref="GeneID:1026341" CDS complement(3673927..3674910) /gene="dppD" /locus_tag="SF3576" /note="Code: EP; COG: COG0444" /codon_start=1 /transl_table=11 /product="dipeptide transporter ATP-binding protein" /protein_id="NP_709320.1" /db_xref="GeneID:1026341" /translation="MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGS GKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSL NPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVA EAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPG KYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL" misc_feature complement(3673930..3674910) /gene="dppD" /locus_tag="SF3576" /note="dipeptide transporter ATP-binding subunit; Provisional; Region: dppD; PRK11022" /db_xref="CDD:182906" gene complement(3674921..3675823) /gene="dppC" /locus_tag="SF3577" /db_xref="GeneID:1025362" CDS complement(3674921..3675823) /gene="dppC" /locus_tag="SF3577" /note="Code: EP; COG: COG1173" /codon_start=1 /transl_table=11 /product="dipeptide transporter" /protein_id="NP_709321.1" /db_xref="GeneID:1025362" /translation="MSQVTENKVISAPVPMTPLQEFWHYFKRNKGAVVGLVYVAIVLF IAIFANWIAPYNPADQFRDALLAPPAWQEGGSMAHLLGTDDVGRDVLSRLMYGARLSL LVGCLVVVLSLIMGVILGLIAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFINIFPNCLAP LIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAI LLTVLAFNLMGDGLRDALDPKLKQ" misc_feature complement(3674924..3675823) /gene="dppC" /locus_tag="SF3577" /note="dipeptide ABC transporter permease DppC; Region: PRK10913" /db_xref="CDD:182833" gene complement(3675833..3676852) /gene="dppB" /locus_tag="SF3578" /db_xref="GeneID:1026313" CDS complement(3675833..3676852) /gene="dppB" /locus_tag="SF3578" /note="Code: EP; COG: COG0601" /codon_start=1 /transl_table=11 /product="dipeptide transporter permease DppB" /protein_id="NP_709322.1" /db_xref="GeneID:1026313" /translation="MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGI SPERHVQLLAELGLDKPMWQQYLHYIWGVMHGDLGISMKSRIPVWEEFVPRFQATLEL GVCAMIFATAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW NLTPVSGRVSDMVFLDDSNPLTGFMLIDTAIWGEDGNFIDAVAHMILPAIVLGTIPLA VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLA GAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR IRHKK" misc_feature complement(3675836..3676852) /gene="dppB" /locus_tag="SF3578" /note="dipeptide ABC transporter permease DppB; Region: PRK10914" /db_xref="CDD:182834" misc_feature complement(order(3675875..3675880,3675887..3675892, 3675899..3675904,3675908..3675913,3675920..3675925, 3675974..3675979,3676004..3676009,3676016..3676027, 3676046..3676048,3676055..3676060,3676100..3676102, 3676151..3676153,3676160..3676165,3676175..3676177, 3676181..3676186,3676193..3676195,3676199..3676201, 3676205..3676210,3676394..3676396,3676400..3676405, 3676412..3676441,3676445..3676456,3676487..3676489, 3676502..3676507,3676514..3676519)) /gene="dppB" /locus_tag="SF3578" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(3676010..3676027,3676394..3676438)) /gene="dppB" /locus_tag="SF3578" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(3675923..3675925,3675974..3675976, 3675983..3675985,3676007..3676009,3676223..3676225, 3676394..3676396)) /gene="dppB" /locus_tag="SF3578" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(3676079..3676081,3676091..3676096, 3676112..3676150)) /gene="dppB" /locus_tag="SF3578" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(3677160..3678767) /gene="dppA" /locus_tag="SF3579" /db_xref="GeneID:1026328" CDS complement(3677160..3678767) /gene="dppA" /locus_tag="SF3579" /note="Code: EP; COG: COG0747" /codon_start=1 /transl_table=11 /product="dipeptide transport protein" /protein_id="NP_709323.1" /db_xref="GeneID:1026328" /translation="MRISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNP QLFTSGTTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWH DNKEFKPTREMNADDVVFSFDRQKNAQNPYHKVSGGSYEYFEGMGLPELISEVKKVDD NTVQFVLTRPEAPFLADLAMDFASILSKEYADAMMKAGTPEKLDLNPIGTGPFQLQQY QKDSRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARM KQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSA KNLIPPTMWGYNDDVQDYTYDPEKAKALLKEAGLEKGFSIDLWAMPVQRPYNPNARRM AEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSC AASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTV FEPVRKEVKGYVVDPLGKHHFENVSIE" misc_feature complement(3677211..3678680) /gene="dppA" /locus_tag="SF3579" /note="The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold; Region: PBP2_DppA_like; cd08493" /db_xref="CDD:173858" misc_feature complement(order(3677460..3677462,3677466..3677477, 3677514..3677516,3677526..3677528)) /gene="dppA" /locus_tag="SF3579" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:173858" gene complement(3679679..3679755) /locus_tag="SF4517" /db_xref="GeneID:3161766" tRNA complement(3679679..3679755) /locus_tag="SF4517" /product="tRNA-Pro" /codon_recognized="CCG" /db_xref="GeneID:3161766" gene complement(3679847..3681571) /gene="yhjW" /locus_tag="SF3580" /db_xref="GeneID:1026322" CDS complement(3679847..3681571) /gene="yhjW" /locus_tag="SF3580" /note="Code: R; COG: COG2194" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709324.3" /db_xref="GeneID:1026322" /translation="MLSPVCPGFVCMRYIKSITQQKLSFLLAIYIGLFMNGAVFYRRF GSYAHDFTVWKGVSAVVELAATVLVTFFLLRLLSLFGRRSWRILASLVVLFSAGASYY MTFLNVVIGYGIIASVMTTDIDLSKEVVGLNFILWLIAVSALPLILIWNNRCRYTLLR QLRTPGQRIRSLVVVVLAGIMVWAPIRLLDIQQKKVERATGVDLPSYGGVVANSYLPS NWLSALGLYAWARVDESSDNNSLLNPAKKFTYQAPQNVDDTYVVFIIGETTRWDHMGI FGYERNTTPKLAQEKNLAAFRGYSCDTATKLSLRCMFVRQGGAEDNPQRTLKEQNIFA VLKQLGFSSDLYAMQSEMWFYSNTMADNIAYREQIGAEPRNRGKPVDDMLLVDEMQQS LGRNPDGKHLIILHTKGSHFNYTQRYPRSFAQWKPECIGVDSGCTKAQMINSYDNSVT YVDHFISSVIDQVRDKKAIVFYAADHGESINEREHLHGTPRELAPPEQFRVPMMVWMS DKYLENPANAQAFAQLKKEADMKVPRRHVELYDTIMGCLGYTSPDGGINENNNWCHIP QAKEAAAN" misc_feature complement(3679865..3681538) /gene="yhjW" /locus_tag="SF3580" /note="kdo(2)-lipid A phosphoethanolamine 7''-transferase; Region: PRK11560" /db_xref="CDD:183198" gene complement(3681862..3683070) /gene="yhjX" /locus_tag="SF3581" /db_xref="GeneID:1026382" CDS complement(3681862..3683070) /gene="yhjX" /locus_tag="SF3581" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="resistance protein" /protein_id="NP_709325.2" /db_xref="GeneID:1026382" /translation="MTPSNYQRTRWLTLIGTIITQFALGSVYTRSLFNGALSAKLDAP VSQVAFSFGLLSLGLAISSSVAGKLQERFGVKRVTVASGILLGLGFFLTAHSNNLMML WLSAGVLVGLADGAGYLLTLSNCVKWFPERKGLISAFAIGSYGLGSLGFKFIDTQLLE TVGLEKTFVIWGAIALVMIVFGATLMKDAPKQEVKTSNGVVEKDYTLAESMRKPQYWM LAVMFLTACMSGLYVIGVAKDIAQSLAHLDVVSAANAVTVISIANLSGRLVLGILSDK IARIRVITIGQVISLVGMAALLFAPLNAVTFFAAIACVAFNFGGTITVFPSLVSEFFG LNNLAKNYGVIYLGFGIGSIFGSIIASLFGGFYVTFYVIFALLILSLALSTTIRQPEQ KMLREAHGSL" misc_feature complement(3681949..3683046) /gene="yhjX" /locus_tag="SF3581" /note="oxalate/formate antiporter family transporter; Region: 2A0111; TIGR00890" /db_xref="CDD:273323" gene complement(3683299..3683997) /gene="yhjY" /locus_tag="SF3583" /db_xref="GeneID:1026320" CDS complement(3683299..3683997) /gene="yhjY" /locus_tag="SF3583" /codon_start=1 /transl_table=11 /product="lipase" /protein_id="NP_709326.2" /db_xref="GeneID:1026320" /translation="MIIKKSGGRWQLSLLASVVISAFFLNTAYAWQQEYIVDTQPGHS TERYTWDSDHQPDYNDILSQRIQSSQRALGLEVNLAEETPVDVTSSMSMGWNFPLYEQ VTTGPVAALHYDGTTTSMYNEFGDSTTTLTDPLWHASVSSLGWRVDSRLGDLRPWAQI SYNQQFGENIWKAQSGLSRMTATNQNGNWLDVTVGADMLLNQNIAAYAALTQAENTTN NSDYLYTMGVSARF" misc_feature complement(3683302..>3683721) /gene="yhjY" /locus_tag="SF3583" /note="Uncharacterized conserved protein YhjY, contains autotransporter beta-barrel domain [General function prediction only]; Region: YhjY; COG5571" /db_xref="CDD:444313" gene 3684155..3684718 /gene="tag" /locus_tag="SF3582" /db_xref="GeneID:1026319" CDS 3684155..3684718 /gene="tag" /locus_tag="SF3582" /note="Code: L; COG: COG2818" /codon_start=1 /transl_table=11 /product="3-methyladenine DNA glycosylase" /protein_id="NP_709327.2" /db_xref="GeneID:1026319" /translation="MERCGWVSQGPLYIAYHDNEWGVPETDSKKLFEMICFEGQQAGL SWITVLKKRENYRAYFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAY LQMEQNGEPFPDFVWSFVNHQPQVTQATTLSEIPTSTSASDALSKALKKRGFKFVGTT ICYSFMQACGLVNDHVVGCCCYLGNKP" misc_feature 3684155..3684715 /gene="tag" /locus_tag="SF3582" /note="Methyladenine glycosylase; Region: Adenine_glyco; cl01059" /db_xref="CDD:470051" gene 3684715..3685155 /gene="yiaC" /locus_tag="SF3584" /db_xref="GeneID:1026383" CDS 3684715..3685155 /gene="yiaC" /locus_tag="SF3584" /note="Code: KR; COG: COG0454" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="NP_709328.1" /db_xref="GeneID:1026383" /translation="MIREAQRSELPAILELWLESTTWGHPFIKANYWRDCIPLVRDAY LANAQNWVWEEDGKLLGFVSIMEGRFLAAMFVAPKAVRRGIGKALMQYVQQRYPHLML EVYQKNQPAIDFYRAQGFHIVDCAWQDETQLPTWIMSWPVVQTL" misc_feature 3684715..3685149 /gene="yiaC" /locus_tag="SF3584" /note="putative acetyltransferase; Provisional; Region: PRK10562" /db_xref="CDD:236715" misc_feature order(3684934..3684942,3684970..3684975) /gene="yiaC" /locus_tag="SF3584" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(3685124..3687403) /gene="bisC" /locus_tag="SF3585" /db_xref="GeneID:1023511" CDS complement(3685124..3687403) /gene="bisC" /locus_tag="SF3585" /note="Code: C; COG: COG0243" /codon_start=1 /transl_table=11 /product="biotin sulfoxide reductase" /protein_id="NP_709329.2" /db_xref="GeneID:1023511" /translation="MLVETDGETVFSSRGALATGMENSLQSAVRDQVHSNTRVRFPMV RKGFLASPENPQGIRGQDEFVRVSWDEALDLIHQQHKRIREAYGPASIFAGSYGWRSN GVLHKASTLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVVGGSEVYQQQTSWPLVLEH SDVVVLWSANPLNTLKIAWNASDEQGLSYFSALRDSGKKLICIDPMRSETVDFFGDKM EWVAPHMGTDVALMLGIAHTLVENGWHDEAFLARCTTGYAVFASYLLGESDGIAKNAE WAAEICGVGAAKIRELAAIFHQNTTMLMAGWGMQRQQFGEQKHWMIVTLAAMLGQIGT PGGGFGLSYHFANGGNPTRRSAVLSSMQGSLPGGCDAVDKIPVARIVEALENPGGAYQ HNGMNRHFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPELVVISECFWTAAAKHADIV LPATTSFERNDLTMTGDYSNQHLVPMKQVVPPRYEARNDFDVFAELSERWEKGGYARF TEGKSQLQWLETFYNVARQRGASQQVELPPFAEFWQANQLIEMPENPDSERFIRFADF CRDPLAHPLKTASGKIEIFSQRIADYGYPDCPGHPMWLEPDEWQGNAEPEQLQVLSAH PAHRLHSQLNYSSLRELYAVANREPVTIHPDDAQARGITEGDMVRVWNSRGQILAGAV ISEGIKPGVICIHEGAWPDLDLTADGICKNGAVNVLTKDLPSSRLGNGCAGNTTLAWL EKYNGPELTLTAFEPPASS" misc_feature complement(3685133..3687388) /gene="bisC" /locus_tag="SF3585" /note="molybdopterin guanine dinucleotide-containing S/N-oxide reductases; Region: bisC_fam; TIGR00509" /db_xref="CDD:273110" gene 3687644..3688270 /gene="yiaD" /locus_tag="SF3586" /db_xref="GeneID:1026339" CDS 3687644..3688270 /gene="yiaD" /locus_tag="SF3586" /note="Code: M; COG: COG2885" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709330.4" /db_xref="GeneID:1026339" /translation="MSGALAVSGCTTNPYTGEREAGKSAIGAGLGSLVGAGIGALSSS KKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRSGDNIILNMPNN VTFDSSSAPLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADS VASALITQGVDASRIRTQGLGPANPIASNSTAEGKAQNRRVEITLSPL" misc_feature 3687644..3688267 /gene="yiaD" /locus_tag="SF3586" /note="OmpA family lipoprotein; Region: PRK10510" /db_xref="CDD:182507" gene 3688374..3689348 /gene="yiaE" /locus_tag="SF3587" /db_xref="GeneID:1026306" CDS 3688374..3689348 /gene="yiaE" /locus_tag="SF3587" /note="Code: CHR; COG: COG1052" /codon_start=1 /transl_table=11 /product="bifunctional glyoxylate/hydroxypyruvate reductase B" /protein_id="NP_709331.2" /db_xref="GeneID:1026306" /translation="MKPSVILYKALPDDLLQRLQAHFTVHQVANLSPQTVVQNAAIFA EAEGLLGSNENVDAALLEKMPKLRATSTISVGYDNFDVDALTARKILLMHTPTVLTET VADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWYGTDVHHKTLGIVGMGRIGMAL AQRVHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCLILPLTDETHHLF GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLS MANVVAVPHIGSATHETRYGMAACAVDNLIDALQGKVEKNCVNPHVAD" misc_feature 3688374..3689342 /gene="yiaE" /locus_tag="SF3587" /note="glyoxylate/hydroxypyruvate reductase GhrB; Region: PRK15409" /db_xref="CDD:185307" misc_feature order(3688398..3688403,3688407..3688409,3688527..3688529, 3688530..3688532,3688590..3688592,3688674..3688679, 3688686..3688691,3688695..3688700,3688707..3688709, 3688719..3688721,3688725..3688727,3688749..3688751, 3688755..3688757,3688761..3688763,3688770..3688790, 3688791..3688805,3688857..3688862,3688872..3688877, 3689169..3689174,3689196..3689198,3689214..3689234, 3689238..3689249,3689253..3689255) /gene="yiaE" /locus_tag="SF3587" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:240626" misc_feature order(3688593..3688601,3688668..3688670,3689082..3689084, 3689226..3689228,3689235..3689237) /gene="yiaE" /locus_tag="SF3587" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:240626" misc_feature order(3688596..3688601,3688680..3688682,3688827..3688841, 3688896..3688904,3688911..3688913,3688992..3689000, 3689010..3689015,3689076..3689084,3689154..3689159, 3689226..3689228,3689232..3689237) /gene="yiaE" /locus_tag="SF3587" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:240626" gene complement(3689398..3690228) /gene="yiaF" /locus_tag="SF3588" /db_xref="GeneID:1026310" CDS complement(3689398..3690228) /gene="yiaF" /locus_tag="SF3588" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709332.1" /db_xref="GeneID:1026310" /translation="MILPGRLRRKGILQACPGLSLSRQTRVCRCALFLGERSKKMATG KSCSRWFAPLAALLMVVSLSGCFDKEGDQRKAFIDFLQNTVMRSGERLPTLTADQKKQ FGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQDYVTQSGPLREMNGSLGV LAQQLQNAKLQADAAHSALKQSDDLKPVFDQAFTKVVTTPADALQPLIPAAQTFTQQL VMVGDYIAQQGTQVSFVANGIQFPTSQQASEYNKLIAPLPAQHQAFNQAWTTAVTATQ " misc_feature complement(3689416..3690069) /gene="yiaF" /locus_tag="SF3588" /note="Protein of unknown function (DUF3053); Region: DUF3053; pfam11254" /db_xref="CDD:431761" gene 3691113..3691325 /gene="cspA" /locus_tag="SF3589" /db_xref="GeneID:1026303" CDS 3691113..3691325 /gene="cspA" /locus_tag="SF3589" /note="Code: K; COG: COG1278" /codon_start=1 /transl_table=11 /product="RNA chaperone/anti-terminator" /protein_id="NP_709333.1" /db_xref="GeneID:1026303" /translation="MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS LDEGQKVSFTIESGAKGPAAGNVTSL" misc_feature 3691113..3691322 /gene="cspA" /locus_tag="SF3589" /note="RNA chaperone/antiterminator CspA; Region: PRK10354" /db_xref="CDD:182402" misc_feature order(3691143..3691145,3691170..3691172,3691203..3691205, 3691290..3691292) /gene="cspA" /locus_tag="SF3589" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature order(3691161..3691181,3691200..3691211) /gene="cspA" /locus_tag="SF3589" /note="RNA-binding motif [active]" /db_xref="CDD:239905" mobile_element complement(3691740..3693106) /note="partial" /mobile_element_type="insertion sequence:IS150" gene complement(3691766..3692617) /locus_tag="SF3590" /db_xref="GeneID:1026327" CDS complement(3691766..3692617) /locus_tag="SF3590" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion element IS150 protein InsB" /protein_id="NP_709334.1" /db_xref="GeneID:1026327" /translation="MKVLNELRQFYPLDELLRAAEIPRSTFYYHLKALSKPDKYADVK KRIGEIYHENRGRYGYRRVTLSLHREGKQINHKAVQRLMGTLSLKAAIKVKRYRSYRG EVGQTAPNVLQRDFKATRPNEKWVTDVTEFAVNGRKLYLSPVIDLFNNEVISYSLSER PVMNMVENMLDQAFKKLNPHEHPVLHSDQGWQYRMRRYQNILKEHGIKQSMSRKGNCL DNAVVECFFGTLKSECFYLDEFSNISELKDAVTEYIEYYNSRRISLKLKGLTPIEYRN QTYMPRV" misc_feature complement(3691793..>3692614) /locus_tag="SF3590" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(3692614..3693282) /locus_tag="SF3591" /db_xref="GeneID:1026308" CDS complement(3692614..3693282) /locus_tag="SF3591" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion element IS150 protein" /protein_id="NP_709335.1" /db_xref="GeneID:1026308" /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL KSPSYTKSVSWQHYLRLEVVNHYFTTDDGYRIISARFGVPRTQVRTWVALYEKHGEKG LIPKPKGVSADPELRIKVVKAVIEQHMSLNQAAAHFMLAGSGSVARWLKVYEERGEAG LRALKISTKRNIAISVDPEKAASALELSKDRRIEDLERQVRFLETRLMYLKKLKALAH PTKK" misc_feature complement(3692956..3693105) /locus_tag="SF3591" /note="Helix-turn-helix domain; Region: HTH_28; pfam13518" /db_xref="CDD:463908" misc_feature complement(<3692617..3692940) /locus_tag="SF3591" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" mobile_element 3693108..3693875 /mobile_element_type="insertion sequence:IS1" gene 3693357..3693860 /gene="insB" /locus_tag="SF3592" /db_xref="GeneID:1026314" CDS 3693357..3693860 /gene="insB" /locus_tag="SF3592" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709336.1" /db_xref="GeneID:1026314" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG CPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 3693465..3693857 /gene="insB" /locus_tag="SF3592" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3693919..3695316 /gene="yhjA" /locus_tag="SF3593" /db_xref="GeneID:1026321" CDS 3693919..3695316 /gene="yhjA" /locus_tag="SF3593" /note="Code: P; COG: COG1858" /codon_start=1 /transl_table=11 /product="cytochrome C peroxidase" /protein_id="NP_709337.2" /db_xref="GeneID:1026321" /translation="MKMVSRITAIGLAGVAICYLGLSGYVWYHDNKRSKQADVQASAV SENNKVLGFLREKGCDYCHTPSAELPAYYYIPGAKQLMDYDIKLGYKSFNLEAVRAAL LADKPVSQSDLNKIEWVMQYETMPPTRYTALHWAGKVSDEERAEILAWIAKQRAEYYA SNDTAPEHRNEPVQPIPQKLPTDAQKVALGFALYHDPRLSADSTISCAHCHTLNAGGV DGRKTSIGVGGAVGPINAPTVFNSVFNVEQFWDGRAATLQDQAGGPPLNPIEMASKSW DEIIAKLEKDPQLKAQFLEVYPQGFSGENITDAIAEFEKTLITPDSPFDKWLRGDENA LTAQQKKGYQLFKDNKCATCHGGIILGGRSFEPLGLKKDFNFGEITAADIGRMNVTKE ERDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGKELPQEDVDDIVAFL HSLNGVYTPYMQDKQ" misc_feature 3693973..3694377 /gene="yhjA" /locus_tag="SF3593" /note="Haem-binding domain; Region: Haem_bd; pfam14376" /db_xref="CDD:464158" misc_feature 3694468..3695283 /gene="yhjA" /locus_tag="SF3593" /note="Cytochrome c peroxidase [Posttranslational modification, protein turnover, chaperones]; Region: MauG; COG1858" /db_xref="CDD:441463" gene 3695527..3696927 /gene="gadA" /locus_tag="SF3594" /db_xref="GeneID:1026324" CDS 3695527..3696927 /gene="gadA" /locus_tag="SF3594" /note="Code: E; COG: COG0076" /codon_start=1 /transl_table=11 /product="glutamate decarboxylase" /protein_id="NP_709338.2" /db_xref="GeneID:1026324" /translation="MDQKLLTDFRSELLDSRFGAKAISTIAESKRFPLHEMRDDVAFQ IINDELYLDGNARQNLATFCQTWDDENVHKLMDLSINKNWIDKEEYPQSAAIDLRCVN MVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCG PVQICWHKFARYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYE FPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHK FGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRL GREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTL YDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSD HPKLQGIAQQNSFKHT" misc_feature 3695572..3696873 /gene="gadA" /locus_tag="SF3594" /note="glutamate decarboxylase; Region: Glu-decarb-GAD; TIGR01788" /db_xref="CDD:130848" misc_feature order(3695902..3695907,3695914..3695916,3696148..3696150, 3696253..3696255,3696262..3696264,3696343..3696345, 3696352..3696354) /gene="gadA" /locus_tag="SF3594" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99743" misc_feature 3696352..3696354 /gene="gadA" /locus_tag="SF3594" /note="catalytic residue [active]" /db_xref="CDD:99743" gene 3697297..3698121 /gene="yhiX" /locus_tag="SF3595" /db_xref="GeneID:1026323" CDS 3697297..3698121 /gene="yhiX" /locus_tag="SF3595" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator GadX" /protein_id="NP_709339.1" /db_xref="GeneID:1026323" /translation="MQSLHGNCLIAYARHKYILTMVNGEYRYFNGGDLVFADASQIRV DKCVENFVLVSRDTLSLFLPMLKEEALNLHAHKKISSLLVHHCSRDIPVFQEVAQLSQ NKNLRYAEMLRKRALIFALLSVFLEDEHFIPLLLNVLQPNMRTRVCTVINNNIAHEWT LARIASELLMSPSLLKKKLREEETSYSQLLTECRMQRALQLIVIHGFSIKRVAVSCGY HSVSYFIYVFRNYYGMTPTEYQERSAQGLPNRDSAASIVAQGNFYGTNRSAEGIRL" misc_feature 3697297..3698118 /gene="yhiX" /locus_tag="SF3595" /note="DNA-binding transcriptional regulator GadX; Provisional; Region: PRK09978" /db_xref="CDD:137624" gene 3698489..3699217 /gene="yhiW" /locus_tag="SF3596" /db_xref="GeneID:1026315" CDS 3698489..3699217 /gene="yhiW" /locus_tag="SF3596" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_709340.1" /db_xref="GeneID:1026315" /translation="MTHVCSVILIRRSFDIYHEQQKISLHNESILLLEKNLADDFAFC SPDTRRLDIDELTVCHYLQNIRQLPRNLGLHSKDRLLINQSPPMPLVTAIFDSFNESG VNSPILSNMLYLSCLSMFSHKKELIPLLFNSISTVSGKVERLISFDIAKRWYLRDIAE RMYTSESLIKKKLQDENTCFSKILLASRMSMARRLLELRQIPLHTIAEKCGYSSTSYF INTFRQYYGVTPHQFAQHSPGTFS" misc_feature 3698489..3699193 /gene="yhiW" /locus_tag="SF3596" /note="transcriptional regulator YdeO; Provisional; Region: PRK09940" /db_xref="CDD:182157" gene complement(3699580..3702693) /locus_tag="SF3597" /pseudogene="unknown" /db_xref="GeneID:1026286" gene complement(3702718..3703014) /gene="yhiU" /locus_tag="SF3599" /pseudo /db_xref="GeneID:1026273" misc_feature complement(3702718..3703014) /gene="yhiU" /locus_tag="SF3599" /note="Similar to Escherichia coli K12 membrane protein gi: 1789929 (386 aa). BLAST with identity of 99% in 85 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo mobile_element 3703180..3703947 /mobile_element_type="insertion sequence:IS1" gene 3703235..3703510 /gene="insA" /locus_tag="SF3600" /db_xref="GeneID:1026890" CDS 3703235..3703510 /gene="insA" /locus_tag="SF3600" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709343.1" /db_xref="GeneID:1026890" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 3703256..>3703507 /gene="insA" /locus_tag="SF3600" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3703537..3703932 /gene="insB" /locus_tag="SF3601" /db_xref="GeneID:1026336" CDS 3703537..3703932 /gene="insB" /locus_tag="SF3601" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709344.1" /db_xref="GeneID:1026336" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 3703540..3703929 /gene="insB" /locus_tag="SF3601" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3703990..3706059) /gene="glyS" /locus_tag="SF3602" /db_xref="GeneID:1026330" CDS complement(3703990..3706059) /gene="glyS" /locus_tag="SF3602" /note="Code: J; COG: COG0751" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase subunit beta" /protein_id="NP_709345.1" /db_xref="GeneID:1026330" /translation="MSEKTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGT VQWFAAPRRLALKVANLAEAQPDREIEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV DQAERLTTDKGEWLLYRAHVKGESTEALLPNMVATSLAKLPIPKLMRWGASDVHFVRP VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPEILRERGKVIAD YEERKAKIKADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEA LVYTMKGDQKYFPVYANDGKLLPNFIFVANIESKDPQQIISGNEKVVRPRLADAEFFF NTDRKKRLEDNLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAEQIGADVNHATRAGLL SKCDLMTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVAC ALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLNLDLQTLTEEAV RLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFDARMKA VSHFRTLEAAAALAAANKRVSNILAKSDEVLSDRVNASTLKEPEEIKLAMQVVVLRDK LEPYFAEGRYQDALVELAELREPVDAFFDKVMVMVDDKELRLNRLTMLEKLRELFLRV ADISLLQ" misc_feature complement(3703993..3706059) /gene="glyS" /locus_tag="SF3602" /note="glycyl-tRNA synthetase, tetrameric type, beta subunit; Region: glyS; TIGR00211" /db_xref="CDD:272962" gene complement(3706069..3706980) /gene="glyQ" /locus_tag="SF3603" /db_xref="GeneID:1026344" CDS complement(3706069..3706980) /gene="glyQ" /locus_tag="SF3603" /note="Code: J; COG: COG0752" /codon_start=1 /transl_table=11 /product="glycyl-tRNA synthetase subunit alpha" /protein_id="NP_709346.1" /db_xref="GeneID:1026344" /translation="MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMT CLRALGPEPMAAAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSL KELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT GEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDF LFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRI RTLTKAVAEAYYASREALGFPMCNKDK" misc_feature complement(3706105..3706968) /gene="glyQ" /locus_tag="SF3603" /note="glycyl-tRNA synthetase subunit alpha; Validated; Region: glyQ; PRK09348" /db_xref="CDD:236473" misc_feature complement(order(3706231..3706233,3706243..3706245, 3706252..3706263,3706273..3706275,3706285..3706287, 3706294..3706296,3706303..3706308,3706315..3706320, 3706327..3706329,3706336..3706338,3706342..3706344, 3706363..3706368,3706375..3706377,3706426..3706428, 3706744..3706746,3706792..3706794,3706804..3706806, 3706831..3706833,3706879..3706890,3706894..3706896, 3706900..3706905,3706927..3706929,3706939..3706941, 3706951..3706953)) /gene="glyQ" /locus_tag="SF3603" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238375" misc_feature complement(3706885..3706908) /gene="glyQ" /locus_tag="SF3603" /note="motif 1; other site" /db_xref="CDD:238375" misc_feature complement(order(3706474..3706479,3706483..3706488, 3706492..3706497,3706543..3706545,3706555..3706560, 3706723..3706731,3706735..3706737,3706741..3706743, 3706789..3706791,3706864..3706866,3706870..3706872)) /gene="glyQ" /locus_tag="SF3603" /note="active site" /db_xref="CDD:238375" misc_feature complement(3706783..3706794) /gene="glyQ" /locus_tag="SF3603" /note="motif 2; other site" /db_xref="CDD:238375" misc_feature complement(3706474..3706485) /gene="glyQ" /locus_tag="SF3603" /note="motif 3; other site" /db_xref="CDD:238375" gene complement(3707075..3707374) /locus_tag="SF3604" /db_xref="GeneID:1025234" CDS complement(3707075..3707374) /locus_tag="SF3604" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709347.1" /db_xref="GeneID:1025234" /translation="MMMNAFFPAMALMVLVGCSTPSPVQKAQRVRVDPLRSLNMEALC KDQAAKRYNTGEQKIDVTAFEQFQGSYEMRGYTFRKEQFVCSFDADGHFLHLSMR" misc_feature complement(3707078..3707302) /locus_tag="SF3604" /note="YsaB-like lipoprotein; Region: YsaB; pfam13983" /db_xref="CDD:404804" gene 3707549..3708544 /gene="yiaH" /locus_tag="SF3605" /db_xref="GeneID:1026272" CDS 3707549..3708544 /gene="yiaH" /locus_tag="SF3605" /note="Code: S; COG: COG3274" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709348.1" /db_xref="GeneID:1026272" /translation="MQPKIYWIDNLRGIACLMVVMIHTTTWYVTNAHSVSPVTWDIAN VLNSASRVSVPLFFMISGYLFFGERSAQPRHFLRIGLCLIFYSAIALLYIALFTSINM ELALKNLLQKPVFYHLWFFFAIAVIYLVSPLIQVKNVGGKMLLVLMVVIGIIANPNTV PQKIDGFEWLPINLYINGDTFYYILYGMLGRAIGMMDTQHKALSWVSAALFATGVFII SRGTLYELQWRGNFADTWYLYCGPMVFICAIALLTLVKNTLDTRTIRGLGLISRHSLG IYGFHALIIHALRTRGIELKNWPILDIIWIFCATLAASLLLSMLVQRIDRNRLVS" misc_feature 3707552..3708478 /gene="yiaH" /locus_tag="SF3605" /note="Surface polysaccharide O-acyltransferase WecH [Cell wall/membrane/envelope biogenesis]; Region: WecH; COG3274" /db_xref="CDD:442505" gene complement(3708586..3709023) /gene="yiaA" /locus_tag="SF3606" /db_xref="GeneID:1026278" CDS complement(3708586..3709023) /gene="yiaA" /locus_tag="SF3606" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709349.2" /db_xref="GeneID:1026278" /translation="MDNKISTYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYY FAVLVLGLFSAASYQKTVRDKYEGIPTTSIYYMTCLTVFIISVALLMVGLWNATLLLS EKGFYGLAFFLSLFGAVAVQKNIRDAGINPPKETQVTQEEYSE" misc_feature complement(3708589..3709023) /gene="yiaA" /locus_tag="SF3606" /note="YiaB family inner membrane protein; Region: PRK11383" /db_xref="CDD:105206" gene complement(3709069..3709410) /gene="yiaB" /locus_tag="SF3607" /db_xref="GeneID:1026295" CDS complement(3709069..3709410) /gene="yiaB" /locus_tag="SF3607" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709350.2" /db_xref="GeneID:1026295" /translation="MKTSKTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTAT FGNYAYLRAEKLGQLDNFFTHICQLVALITIGLLFIGVLNAPINAYEMVIYPIAFFVC LFGQMRLFRSV" misc_feature complement(3709075..3709410) /gene="yiaB" /locus_tag="SF3607" /note="hypothetical protein; Provisional; Region: PRK11403" /db_xref="CDD:183119" gene complement(3709579..3711033) /gene="xylB" /locus_tag="SF3608" /db_xref="GeneID:1026268" CDS complement(3709579..3711033) /gene="xylB" /locus_tag="SF3608" /note="Code: G; COG: COG1070" /codon_start=1 /transl_table=11 /product="xylulokinase" /protein_id="NP_709351.1" /db_xref="GeneID:1026268" /translation="MYIGIDLGTSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQD PEQWWQATDRAMKALGDQHSLQDVKALGIAGQMHGATLLDAQQRVLRPAILWNDGRCA QECTLLEARVPQSRVITGNLMMPGFTAPKLLWVQRHEPEIFRQIDKVLLPKDYLRLRM TGEFASDMSDAAGTMWLDVAKRDWSDVMLQACDLSRDQMPALYEGSEITGALLPEVAK AWGMATVPVVAGGGDNAAGAVGVGMVDANQAMLSLGTSGVYFAVSEGFLSKPESAVHS FCHALPQRWHLMSVMLSAASCLDWAAKLTGLCNVPALIAAAQQADESAEPVWFLPYLS GERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGIKPQSVTL IGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSLIELLPQLP LEQSHLPDAQRYAAYQPRRETFRRLYQQLLPLMA" misc_feature complement(3709582..3711033) /gene="xylB" /locus_tag="SF3608" /note="xylulokinase; Provisional; Region: PRK15027" /db_xref="CDD:184987" gene complement(3711105..3712427) /gene="xylA" /locus_tag="SF3609" /pseudo /db_xref="GeneID:1026334" misc_feature complement(3711105..3712427) /gene="xylA" /locus_tag="SF3609" /note="Similar to Escherichia coli K12 D-xylose isomerase gi: 1789988 (441 aa). BLAST with identity of 99% in 440 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 3712793..3713785 /gene="xylF" /locus_tag="SF3610" /db_xref="GeneID:1026338" CDS 3712793..3713785 /gene="xylF" /locus_tag="SF3610" /note="Code: G; COG: COG1879" /codon_start=1 /transl_table=11 /product="D-xylose transporter subunit XylF" /protein_id="NP_709352.1" /db_xref="GeneID:1026338" /translation="MKIKNILLTLCTSLLLTNVAAHAKEVKIGMAIDDLRLERWQKDR DIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKKA KQEGIKVLAYDRMINDADIDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNN AKLFRAGQMKVLKPYVDSGKIKVVGDQWVDGWLPENALKIMENALTANNNKIDAVVAS NDATAGGAIQALSAQGLSGKVAISGQDADLAGIKRIAAGTQTMTVYKPITLLANTAAE IAVELGNGQEPKADTSLNNGLKDVPSRLLTPIDVNKNNIKDTVIKDGFHKESEL" misc_feature 3712793..3713782 /gene="xylF" /locus_tag="SF3610" /note="D-xylose ABC transporter substrate-binding protein; Region: xylF; PRK10355" /db_xref="CDD:182403" misc_feature order(3712907..3712912,3713129..3713134,3713264..3713266, 3713270..3713272,3713282..3713284,3713447..3713449, 3713522..3713527,3713585..3713587) /gene="xylF" /locus_tag="SF3610" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380646" gene 3713863..3715404 /gene="xylG" /locus_tag="SF3611" /db_xref="GeneID:1026269" CDS 3713863..3715404 /gene="xylG" /locus_tag="SF3611" /note="Code: G; COG: COG1129" /codon_start=1 /transl_table=11 /product="xylose transporter ATP-binding subunit" /protein_id="NP_709353.1" /db_xref="GeneID:1026269" /translation="MPYLLEMKNITKTFGSVKAIDNVSLRLNAGEIVSLCGENGSGKS TLMKVLCGIYPHGSYEGEIIFAGEEIQASHIRDTERKGIAIIHQELALVKELTVLENI FLGNEITHNGIMDYDLMTLRYQKLLAQVSLSISPDTRVGDLGLGQQQLVEIAKALNKQ VRLLILDEPTASLTEQETSVLLDIIRDLQQHGIACIYISHKLNEVKAISDTICVIRDG QHIGTRDAAGMSEDDIITMMVERELTAIYPNEPHTTGDEILRIEHLTAWHPVNRHIKR VNDVSFSLKRGEILGIAGLVGAGRTETIQCLFGVWPGQWEGKIYIDGKQVDIRNCQQA ITQGIAMVPEDRKRDGIVPVMAVGKNITLAALNKFTGGISQLDDAAEQKCILESIQQL KVKTSSPDLAIGRLSGGNQQKAILARCLLLNPRILILDEPTRGIDIGAKYEIYKLINQ LVQQGIAVIVISSELPEVLGLSDRVLVMHEGKLKANLINHNLTQEQVMEAALRSEHHV EKQSV" misc_feature 3713863..3715380 /gene="xylG" /locus_tag="SF3611" /note="xylose transporter ATP-binding subunit; Provisional; Region: PRK13549" /db_xref="CDD:184134" gene 3715382..3716563 /gene="xylH" /locus_tag="SF3612" /db_xref="GeneID:1026301" CDS 3715382..3716563 /gene="xylH" /locus_tag="SF3612" /note="Code: G; COG: COG1172" /codon_start=1 /transl_table=11 /product="xylose transporter membrane subunit" /protein_id="NP_709354.1" /db_xref="GeneID:1026301" /translation="MSKSNPSEVKLAVPTSGGFSGLKSLNLQVFVMIAAIIAIMLFFT WTTDGAYLSARNVSNLLRQTAITGILAVGMVFVIISAEIDLSVGSMMGLLGGVAAICD VWLGWPLPLTIIVTLVLGLLLGAWNGWWVAYRKVPSFIVTLAGMLAFRGILIGITNGT TVSPTSAAMSQIGQSYLPASTGFIIGALGLMAFVGWQWRGRMRRQALGLQSPASTAVV GRQALTAIIVLGAIWLLNDYRGVPTPVLLLTLLLLGGMFMATRTAFGRRIYAIGGNLE AARLSGINVERTKLAVFAINGLMVAIAGLILSSRLGAGSPSAGNIAELDAIAACVIGG TSLAGGVGSVAGAVMGAFIMASLDNGMSMMDVPTFWQYIVKGAILLLAVWMDSATKRR S" misc_feature 3715433..3716560 /gene="xylH" /locus_tag="SF3612" /note="ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]; Region: XylH; COG4214" /db_xref="CDD:443360" gene 3716641..3717819 /gene="xylR" /locus_tag="SF3613" /pseudo /db_xref="GeneID:1025378" misc_feature 3716641..3717819 /gene="xylR" /locus_tag="SF3613" /note="Similar to Escherichia coli K12 regulator of xyl operon gi: 1789993 (393 aa). BLAST with identity of 99% in 393 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(3717927..3718751) /gene="bax" /locus_tag="SF3614" /db_xref="GeneID:1026276" CDS complement(3717927..3718751) /gene="bax" /locus_tag="SF3614" /note="Code: R; COG: COG2992" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709355.1" /db_xref="GeneID:1026276" /translation="MILTPIRRYGAMILMLLTLVFSSEVLAKTHTTTASQKSHLTKAS NKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITAERNWL ISKQYQGQWAPAERARLKDIAKRYKVKWSGNTRKIPWNTLLERVDIIPTSMVATMAAA ESGWGTSKLARNNNNLFGMKCMKGRCTNAPGKVKGYSQFSSVKESVSAYVTNLNTHPA YSSFRKSRAQLRKADQEVTATAMIHKLKGYSTKGKSYNNYLFAMYQDNQRLIAAHM" misc_feature complement(3717930..3718751) /gene="bax" /locus_tag="SF3614" /note="protein bax; Region: PRK10356" /db_xref="CDD:182404" gene 3719071..3721101 /gene="malS" /locus_tag="SF3615" /db_xref="GeneID:1026287" CDS 3719071..3721101 /gene="malS" /locus_tag="SF3615" /note="Code: G; COG: COG0366" /codon_start=1 /transl_table=11 /product="alpha-amylase" /protein_id="NP_709356.1" /db_xref="GeneID:1026287" /translation="MKLAACFLTLLPGFAVAASWTSPGFPAFSEQGTGTFVSHAQLPK GTRPLTLNFDQQCWQPADAIKLNQMLSLQPCSNTPPQWRLFRDGKYTLQIDTRSGTPT LMISIQNAAEPVANLVRECPKWDGLPLTLDVSATFPEGAAVRDYYSQQIAIVKNGQIT LQPAATSNGLLLLERAETDTSAPFDWHNATVYFVLTDRFENGDPSNDQSYGRHKDGMA EIGTFHGGDLRGLTNKLDYLQQLGVNALWISAPFEQIHGWVGGGTKGDFPHYAYHGYY TQDWTNLDANMGNEADLRTLVDSAHQRGIRILFDVVMNHTSYATLADMQEYQFGALYL SGDEVKKTLGERWSDWKPAAGQTWHSFNDYINFSDKTGWDKWWGKNWIRTDIGDYDNP GFDDLTMSLAFLPDIKTESTTASGLPVFYKNKTDTHAKVIEGFTPRDYLTHWLSQWVR DYGIDGFRVDTAKHVELPAWQQLKTEASSALREWKKTNPDKALDDKPFWMTGEAWGHG VMQSDYYRHGFDAMINFDYQEQAAKAVDCLAQMDTTWQQMAEKLQGFNVLSYLSSHDT RLFREGGDKAAELLLLAPGAVQIFYGDESSRPFGPTGSDPLQGTRSDMNWQDVSGKSA ANVAHWQKISQFRARHPAIGAGKQTTLSLKQGYGFVREHGDDKVLVIWAGQQ" misc_feature 3719071..3721098 /gene="malS" /locus_tag="SF3615" /note="alpha-amylase; Reviewed; Region: malS; PRK09505" /db_xref="CDD:236543" gene 3721279..3722532 /gene="avtA" /locus_tag="SF3616" /db_xref="GeneID:1026291" CDS 3721279..3722532 /gene="avtA" /locus_tag="SF3616" /note="Code: E; COG: COG0436" /codon_start=1 /transl_table=11 /product="valine--pyruvate transaminase" /protein_id="NP_709357.2" /db_xref="GeneID:1026291" /translation="MTFSLFGDKFTRHSGITLLMEDLNDGLRTPGAIMLGGGNPAQIP EMQDYFQTLLTDMLESGKATDALCNYDGPQGKTELLTLLAGMLREKLGWDIEPQNIAL TNGSQSAFFYLFNLFAGRRADGRVKKVLFPLAPEYIGYADAGLEEDLFVSARPNIELL PEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELLKLDALANQHGIPLVID NAYGVPFPGIIFSEGRPLWNPNIVLCMSLSKLGLPGSRCGIIIANEKIITAITNMNGI ISLAPGGIGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQETIAIIRRYLPENRCLIHK PEGAIFLWLWFKDLPITTEQLYQRLKARGVLMVPGHNFFPGLDKPWPHTHQCMRMNYV PEPEKIEAGVKILAEEIERAWAESH" misc_feature 3721279..3722526 /gene="avtA" /locus_tag="SF3616" /note="valine--pyruvate transaminase; Provisional; Region: avtA; PRK09440" /db_xref="CDD:236517" gene complement(3722683..3723156) /gene="yiaI" /locus_tag="SF3617" /db_xref="GeneID:1026288" CDS complement(3722683..3723156) /gene="yiaI" /locus_tag="SF3617" /note="Code: C; COG: COG1142" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709358.2" /db_xref="GeneID:1026288" /translation="MNRFIIADATKCIGCRTCEVACAVSHQENQDCAALSPDEFISRI RVIKDHSWTTPVACHQCEDAPCANVCPVDAISREHGHIFVEQTRCIGCKSCMLACPFG AMEVVSSRKKARAIKCDLCWHRETGPACVEACPTKALQCMDVEKVQRHRLQQQPV" misc_feature complement(3722713..3723156) /gene="yiaI" /locus_tag="SF3617" /note="electron transport protein HydN; Region: PRK10330" /db_xref="CDD:182382" gene complement(3723258..3724106) /gene="yiaJ" /locus_tag="SF3618" /db_xref="GeneID:1026289" CDS complement(3723258..3724106) /gene="yiaJ" /locus_tag="SF3618" /note="Code: K; COG: COG1414" /codon_start=1 /transl_table=11 /product="regulator" /protein_id="NP_709359.1" /db_xref="GeneID:1026289" /translation="MGKEVMGKKENEMAQEKERPAGSQSLFRGLMLIEILSNYPNGCP LAHLSELAGLNKSTVHRLLQGLQSCGYVTTAPAAGSYRLTTKFIAVGQKALSSLNIIH IAAPHLEALNIATGETINFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMG KIYMAFGHPDYVKSYWENHQHEIQPLTRNTITELPAMFDELAHIRESGAAMDREENEL GVSCIAVPVFDIHGRVPYAVSISLSTSRLKQVGEKNLLKPLRETAQAISNELGFTVRD DLGAIT" misc_feature complement(3723288..3724052) /gene="yiaJ" /locus_tag="SF3618" /note="DNA-binding transcriptional regulator, IclR family [Transcription]; Region: IclR; COG1414" /db_xref="CDD:441024" gene 3724306..3725304 /gene="yiaK" /locus_tag="SF3619" /db_xref="GeneID:1026304" CDS 3724306..3725304 /gene="yiaK" /locus_tag="SF3619" /note="Code: C; COG: COG2055" /codon_start=1 /transl_table=11 /product="2,3-diketo-L-gulonate reductase" /protein_id="NP_709360.1" /db_xref="GeneID:1026304" /translation="MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSH GVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAA DHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLI VAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRI LPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPT RDAKLQRIMDYVTTAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL" misc_feature 3724306..3725301 /gene="yiaK" /locus_tag="SF3619" /note="2,3-diketo-L-gulonate reductase; Provisional; Region: PRK13260" /db_xref="CDD:183926" mobile_element 3725464..3726231 /mobile_element_type="insertion sequence:IS1" gene 3725519..3725794 /gene="insA" /locus_tag="SF3620" /db_xref="GeneID:1026298" CDS 3725519..3725794 /gene="insA" /locus_tag="SF3620" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709361.1" /db_xref="GeneID:1026298" /translation="MASISIRCPSCSATEGVVRNSKSTAGHQRYLCSHCRKTWQLQFT YTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 3725540..>3725791 /gene="insA" /locus_tag="SF3620" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3725821..3726216 /gene="insB" /locus_tag="SF3621" /db_xref="GeneID:1026284" CDS 3725821..3726216 /gene="insB" /locus_tag="SF3621" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709362.1" /db_xref="GeneID:1026284" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 3725824..3726213 /gene="insB" /locus_tag="SF3621" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3726231..3726547 /gene="yiaM" /locus_tag="SF3622" /pseudo /db_xref="GeneID:1026297" misc_feature 3726231..3726547 /gene="yiaM" /locus_tag="SF3622" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790002 (158 aa). BLAST with identity of 99% in 106 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene 3726550..3727842 /locus_tag="SF3623" /db_xref="GeneID:1026892" CDS 3726550..3727842 /locus_tag="SF3623" /note="Code: S; COG: COG1593" /codon_start=1 /transl_table=11 /product="L-dehydroascorbate transporter large permease" /protein_id="NP_709363.1" /db_xref="GeneID:1026892" /translation="MAVLIFLGCLLGGIAIGLPIAWALLLCGAALMFWLDMFDVQIMA QTLVNGADSFSLLAIPFFVLAGEIMNAGGLLKRIVDLPMKLVGHKPGGLGYVGVLAAM IMASLSGSAVADTAAVAALLVPMMRSANYPVNRAAGLIASGGIIAPIIPPSIPFIIFG VSSGLSISKLFMAGIAPGIMMGATLMLTWWRQASRLNLPRQQKATMQEIWHSFVSGIW ALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVATVIYREMTFATLWHVLIGAAKTTS VVMFLVASAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMVAILIVGMVMDLTP TVLILTPVLMPLVKEAGIDPIYFGVMFIINCSIGLITPPIGNVLNVISGVAKLKFDDA VRGVFPYVLVLYSLLVVFVFIPDLIILPLKWMVMLPTY" misc_feature 3726550..3727821 /locus_tag="SF3623" /note="2,3-diketo-L-gulonate transporter large permease YiaN; Region: PRK15060" /db_xref="CDD:185020" mobile_element 3727821..3728588 /mobile_element_type="insertion sequence:IS1" gene 3727876..3728151 /gene="insA" /locus_tag="SF3624" /db_xref="GeneID:1026281" CDS 3727876..3728151 /gene="insA" /locus_tag="SF3624" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709364.1" /db_xref="GeneID:1026281" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 3727897..>3728148 /gene="insA" /locus_tag="SF3624" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3728178..3728573 /gene="insB" /locus_tag="SF3625" /db_xref="GeneID:1026311" CDS 3728178..3728573 /gene="insB" /locus_tag="SF3625" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709365.1" /db_xref="GeneID:1026311" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 3728181..3728570 /gene="insB" /locus_tag="SF3625" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3728838..3729050 /locus_tag="SF3625a" /db_xref="GeneID:16608365" CDS 3728838..3729050 /locus_tag="SF3625a" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_008439290.1" /db_xref="GeneID:16608365" /translation="MCCLVFQQDEVYHIEIVELLAKLMNNSSKTSTVQIKRIKPSIIY RLLLIGLGSPMVIYGLVRPLTIETRD" gene complement(3729269..3730897) /gene="aldB" /locus_tag="SF3626" /db_xref="GeneID:1026290" CDS complement(3729269..3730897) /gene="aldB" /locus_tag="SF3626" /note="Code: C; COG: COG1012" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase" /protein_id="NP_709366.2" /db_xref="GeneID:1026290" /translation="MIAVVKLLPTGEDFASHVYPCYTSHRKETIMTNNPPSAQIKPGE YGFPIKLKARYDNFIGGEWVAPADGEYYQNLTPVTGQLLCEVASSGKRDIDLALDAAH KVKDKWAHTSVQDRAAILFKIADRMEQNLELLATAETWDNGKPIRETSAADVPLAIDH FRYFASCIRAQEGGISEVDSETVAYHFHEPLGVVGQIIPWNFPLLMASWKMAPALAAG NCVVLKPARLTPLSVLLLMEIVGDLLPPGVVNVVNGAGGEIGEYLATSKRIAKVAFTG STEVGQQIMQYATQNIIPVTLELGGKSPNIFFADVMDEEDAFFDKALEGFALFAFNQG EVCTCPSRALVQESIYERFMERAIRRVESIRSGNPLDSVTQMGAQVSHGQLETILNYI DIGKKEGADVLTGGRRKLLEGELKDGYYLEPTILFGQNNMRVFQEEIFGPVLAVTTFK TMEEALELANDTQYGLGAGVWSRNGNLAYKMGRGIQAGRVWTNCYHAYPAHAAFGGYK QSGIGRETHKMMLEHYQQTKCLLVSYSDKPLGLF" misc_feature complement(3729296..3730735) /gene="aldB" /locus_tag="SF3626" /note="Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like; Region: ALDH_ACDHII_AcoD-like; cd07559" /db_xref="CDD:143471" misc_feature complement(order(3729386..3729388,3729500..3729502, 3729578..3729580,3729584..3729586,3729887..3729889, 3729998..3730006,3730046..3730051,3730058..3730060, 3730067..3730078,3730217..3730222,3730226..3730228, 3730271..3730273,3730295..3730309)) /gene="aldB" /locus_tag="SF3626" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143471" misc_feature complement(order(3729887..3729889,3729896..3729898, 3730004..3730006,3730295..3730297)) /gene="aldB" /locus_tag="SF3626" /note="catalytic residues [active]" /db_xref="CDD:143471" gene complement(3730972..3732123) /gene="yiaY" /locus_tag="SF3627" /db_xref="GeneID:1026236" CDS complement(3730972..3732123) /gene="yiaY" /locus_tag="SF3627" /note="Code: C; COG: COG1454" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase" /protein_id="NP_709367.1" /db_xref="GeneID:1026236" /translation="MASSTFFIPSVNVIGADSLTDAMNMMADYGFTRTLIVTDNMLTK LGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHD CAKGIALVAANGGDIRDYEGVDRSAKPQLPMIAINTTAGTASEMTRFCIITDEARHNK MAIVDKHVTPLLSVNDSSLMIGMPKSLTAATGMDALTHAIEAYVSIAATPITDACALK AVTMIAENLPLAVEDGSNAKAREAMAYAQFLAGMAFNNASLGYVHAMAHQLGGFYNLP HGVCNAVLLPHVQVFNSKVAAARLRDCAAAMGVNVTGKNDAEGAEACINAIRELAKKV DIPAGLRDLNVKEEDFAVLATNALKDACGFTNPIQATHEEIVVIYRAAM" misc_feature complement(3730975..3732123) /gene="yiaY" /locus_tag="SF3627" /note="putative alcohol dehydrogenase; Provisional; Region: PRK09860" /db_xref="CDD:182118" misc_feature complement(order(3731293..3731295,3731323..3731325, 3731335..3731337,3731530..3731532,3731542..3731544, 3731563..3731565,3731587..3731589,3731641..3731646, 3731701..3731703,3731707..3731712,3731809..3731811, 3731818..3731820,3731827..3731835,3732007..3732009)) /gene="yiaY" /locus_tag="SF3627" /note="putative active site [active]" /db_xref="CDD:341467" misc_feature complement(order(3731281..3731283,3731293..3731295, 3731335..3731337,3731530..3731532,3731542..3731544)) /gene="yiaY" /locus_tag="SF3627" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:341467" gene complement(3732313..3734157) /gene="selB" /locus_tag="SF3628" /db_xref="GeneID:1026296" CDS complement(3732313..3734157) /gene="selB" /locus_tag="SF3628" /note="Code: J; COG: COG3276" /codon_start=1 /transl_table=11 /product="selenocysteinyl-tRNA-specific translation factor" /protein_id="NP_709368.1" /db_xref="GeneID:1026296" /translation="MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY WPQPDGRVPGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLT GNPMLTVALTKADRVDEARVDEVERQVKEVLREYGFAEAKLFITAATEGRGIDALREH LLQLPEREHASQHSFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDSLWLTGVNKPMRV RALHAQNQPTETANAGQRIALDIAGDAEKEQINRGDWLLADVPPEPFTRVIVELQTHA PLTQWQPLHIHHAASHVTGRVSLLEDNLAELVFDTPLWLADNDRLVLRDISARNTLAG ARVVMLNPPRRGKRKPEYLQWLASLARAQNDSEALADHLQRGAVNLPDFAWARQLNGE GMRELLQQPGYIQAGYSLLNAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMAL PMEDEALVLLLIEKMRESGDILSHHGWLHLPDHKAGFSEEQQAIWQKAEPLFGDEPWW VRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGS TCAADFRDRLGVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPEK" misc_feature complement(3732316..3734157) /gene="selB" /locus_tag="SF3628" /note="selenocysteinyl-tRNA-specific translation factor; Provisional; Region: PRK10512" /db_xref="CDD:182508" gene complement(3734154..3735545) /gene="selA" /locus_tag="SF3629" /db_xref="GeneID:1026305" CDS complement(3734154..3735545) /gene="selA" /locus_tag="SF3629" /note="Code: E; COG: COG1921" /codon_start=1 /transl_table=11 /product="selenocysteine synthase" /protein_id="NP_709369.1" /db_xref="GeneID:1026305" /translation="MTTETRSLYSQLPAIDRLLRDSSFLSLRDTYGHTRVVELLRQML DEAREVIRGSQTLPAWCENWAQEVDARLTKEAQSALRPVINLTGTVLHTNLGRALQAE AAVEAVAQAMRSPVTLEYDLDDAGRGHRDRALAQLLCRITGAEDACIVNNNAAAVLLM LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHANDYRQAVNEN TALLMKVHTSNYSIQGFTKAIDEAELVALGKELDVPVVTDLGSGSLVDLSQYGLPKEP MPQELIAAGVSLVSFSGDKLLGGPQAGIIVGKKEMIARLQSHPLKRALRADKMTLAAL EATLRLYLHPEALSEKLPTLRLLTRSAEVIQIQAQRLQAPLVAHYGAEFAVQVMPCLS QIGSGSLPVDRLPSAALTFTPHDGRGSHLESLAARWRELPVPVIGRIYDGRLWLDLRC LEDEQRFLEMLLK" misc_feature complement(3734163..3735521) /gene="selA" /locus_tag="SF3629" /note="L-seryl-tRNA(Sec) selenium transferase; Region: selA; TIGR00474" /db_xref="CDD:273099" gene complement(3735643..3736251) /gene="yibF" /locus_tag="SF3630" /db_xref="GeneID:1026302" CDS complement(3735643..3736251) /gene="yibF" /locus_tag="SF3630" /note="Code: O; COG: COG0625" /codon_start=1 /transl_table=11 /product="glutathione S-transferase" /protein_id="NP_709370.1" /db_xref="GeneID:1026302" /translation="MKLVGSYTSPFVRKLFILLLEKGITFEFINELPYNADNGVAQFN PLGKVPVLVTEEGECWFDSPIIAEYIELMNVAPAMLPRDPLESLRVRKIEALADGIMD AGLVSVREQARPAAQQSEDELLRQREKINRSLDVLEGYLVDGTLKTDTVNLATIAIAC AVGYLNFRRVAPGWCVDRPHLVKLVENLFSRESFARTEPPKA" misc_feature complement(3735646..3736251) /gene="yibF" /locus_tag="SF3630" /note="putative glutathione S-transferase; Provisional; Region: PRK10357" /db_xref="CDD:182405" gene complement(3736322..3737407) /gene="yibH" /locus_tag="SF3631" /db_xref="GeneID:1026254" CDS complement(3736322..3737407) /gene="yibH" /locus_tag="SF3631" /note="Code: Q; COG: COG1566" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709371.1" /db_xref="GeneID:1026254" /translation="MDLLIVLTYVALATAALGGVFLVSGLILLMNYNHPYTFTAQKAV IAIPITPQVTGIVTEVTDKNNQLIQKGEVLFKLDPVRYQARVDRLQADLMTATHNIKT LRAQLTEAQANTTQVSAERDRLFKNYQRYLKGSQAAVNPFSERDIDDARQNFLAQDAL VKGSVAEQAQIQSQLDSMVNGEQSQIVSLRAQLTEAKYNLEQTVIRAPSNGYVTQVLI RPGTYAAALPLRPVMVFIPEQKRQIVAQFRQNSLLRLKPGDDAEVVFNALPGQVFHGK LTSILPVVPGGSYQAQGVLQSLTVVPGTDGVLGTIELDPNDDIDALPDGIYAQVAVYS DHFSHVSVMRKVLLRMTSWMHYLYLDH" misc_feature complement(3736544..3737314) /gene="yibH" /locus_tag="SF3631" /note="Cation efflux system protein CusB domain 1; Region: CusB_dom_1; pfam00529" /db_xref="CDD:425733" gene complement(3737410..3737772) /gene="yibI" /locus_tag="SF3632" /db_xref="GeneID:1026241" CDS complement(3737410..3737772) /gene="yibI" /locus_tag="SF3632" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709372.1" /db_xref="GeneID:1026241" /translation="MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAI HTAGWVSLFTLHVIWPFLWIWATLYQPERGWGMQSHVASQEKATEPEIAALSDRISRL EHQLAAEKKTDYSTFPEI" misc_feature complement(3737536..3737766) /gene="yibI" /locus_tag="SF3632" /note="Protein of unknown function (DUF3302); Region: DUF3302; pfam11742" /db_xref="CDD:432040" gene 3738309..3740222 /gene="mtlA" /locus_tag="SF3633" /db_xref="GeneID:1026251" CDS 3738309..3740222 /gene="mtlA" /locus_tag="SF3633" /note="Code: C; COG: COG2213" /codon_start=1 /transl_table=11 /product="PTS system mannitol-specific transporter subunit IICBA" /protein_id="NP_709373.1" /db_xref="GeneID:1026251" /translation="MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLP NETLAKLVGPMITYLLPLLIGYTGGKLVGGKRGGVVGAITTMGVIVGADMPMFLGSMI AGPLGGWCIKHFDRWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPIVEALSKM LAAGVNFMVVHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHELGKSIFFLIE ANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILG GMTGVFTLTILGGGLVSPASPGSILAVLAMTPKGAYFANIAGVCAAMAVSFVVSAILL KTSKVKEEDDIEAATRRMQDMKAESKGTSPLSAGDVTNDLSHVRKIIVACDAGMGSSA MGAGVLRKKIQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLT NFLDSGLYTSLTERLVAAQRHTENEVKVKDSLKDSFDDSSANLFKLGAENIFLGRKAA TKEEAIRFAGEQLVKGGYVEPEYVQAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKT GVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTT SVDEVLELLAGRK" misc_feature 3738309..3740219 /gene="mtlA" /locus_tag="SF3633" /note="PTS system mannitol-specific transporter subunit IICBA; Provisional; Region: PRK15083" /db_xref="CDD:237905" gene 3740317..3741465 /gene="mtlD" /locus_tag="SF3634" /db_xref="GeneID:1023609" CDS 3740317..3741465 /gene="mtlD" /locus_tag="SF3634" /note="Code: G; COG: COG0246" /codon_start=1 /transl_table=11 /product="mannitol-1-phosphate 5-dehydrogenase" /protein_id="NP_709374.2" /db_xref="GeneID:1023609" /translation="MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARH SYQVHVVGETEQVDTVSGVNAVSSIGDDVVDLIAQVDLVTTAVGPVVLERIAPAIAKG LVKRKEQGNESPLNIIACENMVRGTTQLKGHVMNALPEDAKAWVEEHVGFVDSAVDRI VPPSASATNDPLEVTVETFSEWIVDKTQFKGALPNIPGMELTDNLMAFVERKLFTLNT GHAITAYLGKLAGHQTIRDAILDEKIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQK ILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYSLPHKNLIQGIAGAMHF RSEDDPQAQELAALIADKGPQAALAQISGLDANSEVVSEAVTAYKAMQ" misc_feature 3740317..3741462 /gene="mtlD" /locus_tag="SF3634" /note="mannitol-1-phosphate 5-dehydrogenase; Provisional; Region: PRK02318" /db_xref="CDD:235031" gene 3741465..3742052 /gene="mtlR" /locus_tag="SF3635" /db_xref="GeneID:1026253" CDS 3741465..3742052 /gene="mtlR" /locus_tag="SF3635" /codon_start=1 /transl_table=11 /product="mannitol repressor protein" /protein_id="NP_709375.1" /db_xref="GeneID:1026253" /translation="MVDQAQDTLRPNNRLSDMQATMEQTQAVENRVLERLNAGKTVRS FLITAVELLTEAVNLLVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGVI NRQEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVAALPPPPQFEPADSSL YAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK" misc_feature 3741540..3742043 /gene="mtlR" /locus_tag="SF3635" /note="MltR family transcriptional regulator; Region: mtlR; PRK11001" /db_xref="CDD:236817" gene complement(3742064..3742273) /locus_tag="SF3635a" /db_xref="GeneID:16608366" CDS complement(3742064..3742273) /locus_tag="SF3635a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439291.1" /db_xref="GeneID:16608366" /translation="MGKLGENVPLLIDKAVDFMASSQAFREYLKKLPPRNAIPSGIPD ESVPLYLQRLEYYRRLYRPKQVEGQ" gene 3742557..3742919 /gene="yibL" /locus_tag="SF3636" /db_xref="GeneID:1026293" CDS 3742557..3742919 /gene="yibL" /locus_tag="SF3636" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709376.1" /db_xref="GeneID:1026293" /translation="MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKAT LEAEIARLREVHSQKLSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTA LGREMGLEEMTGFSKTTF" misc_feature 3742563..3742916 /gene="yibL" /locus_tag="SF3636" /note="YibL family ribosome-associated protein; Region: PRK11020" /db_xref="CDD:182904" mobile_element complement(3743023..3743790) /mobile_element_type="insertion sequence:IS1" gene complement(3743038..3743433) /gene="insB" /locus_tag="SF3637" /db_xref="GeneID:1026239" CDS complement(3743038..3743433) /gene="insB" /locus_tag="SF3637" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709377.1" /db_xref="GeneID:1026239" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3743041..3743430) /gene="insB" /locus_tag="SF3637" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3743460..3743735) /gene="insA" /locus_tag="SF3638" /db_xref="GeneID:1026257" CDS complement(3743460..3743735) /gene="insA" /locus_tag="SF3638" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709378.1" /db_xref="GeneID:1026257" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3743463..3743714) /gene="insA" /locus_tag="SF3638" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3744374..3744922 /locus_tag="SF3639" /db_xref="GeneID:1026245" CDS 3744374..3744922 /locus_tag="SF3639" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709379.1" /db_xref="GeneID:1026245" /translation="MLLEKQQAQLKSQLETIQKQQTGIINSTKTLTHVIKSVKDQQNT FIFTEFNPAKTKYFILNNGSVALAGRVLSIDATENGSVIHISLVNLLSTPISNIGFNA TWGGEKPVDAKEFARWQQLLFNTSMKSTLKLLPGQWQDINLTLKGVSPNNLGYLKLAI NMENIQFDNLPSAENRQKRSKK" misc_feature 3744380..3744847 /locus_tag="SF3639" /note="Protein of unknown function (DUF3251); Region: DUF3251; cl08186" /db_xref="CDD:415473" gene 3744966..3746114 /locus_tag="SF3640" /db_xref="GeneID:1026247" CDS 3744966..3746114 /locus_tag="SF3640" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709380.1" /db_xref="GeneID:1026247" /translation="MNKIFKVIWNPATGNYTVTSETAKSRGKKSGRSKLLISALVAGG MLSSFGALANAGNDNGQGVDYGSGSAGDGWVAIGKGAKANTFMNTSGSSTAVGYDAIA EGQYSSAIGSKTHAIGGASMAFGVSAISEGDRSIALGASSYSLGQYSMALGRYSKALG KLSIAMGDSSKAEGANAIALGRSSVASGTDSLAFGRQSLASAANAIAIGAETEAAENA TAIGNNAKAKGTNSMAMGFGSLADKVNTIALGNGSQALADNAIAIGQGNKADGVDAIA LGNGSQSRGLNTIALGTASNATGDKSLALGSNSSANGINSVALGADSIADLDNTVSVG NSSLKRKIVNVKNGAIKSDSYDAINGSQLYAISDSVAKKAWRRGCSRC" misc_feature 3744966..3745115 /locus_tag="SF3640" /note="Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018" /db_xref="CDD:463773" misc_feature <3745104..3745364 /locus_tag="SF3640" /note="Left-handed beta-roll, including virulence factors and various other proteins; Region: LbR-like; cl17507" /db_xref="CDD:248061" misc_feature 3745326..3745694 /locus_tag="SF3640" /note="YadA-like, left-handed beta-roll; Region: LbR_YadA-like; cd12820" /db_xref="CDD:240612" misc_feature order(3745329..3745331,3745338..3745343,3745365..3745367, 3745380..3745385,3745407..3745409,3745413..3745415, 3745419..3745427,3745449..3745451,3745455..3745457, 3745461..3745469,3745491..3745493,3745497..3745499, 3745503..3745511,3745533..3745535,3745539..3745541, 3745545..3745553,3745575..3745577,3745581..3745583, 3745587..3745595,3745614..3745616,3745620..3745622, 3745626..3745631,3745641..3745643,3745647..3745652, 3745659..3745676,3745686..3745688) /locus_tag="SF3640" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:240612" misc_feature 3745575..3745943 /locus_tag="SF3640" /note="YadA-like, left-handed beta-roll; Region: LbR_YadA-like; cd12820" /db_xref="CDD:240612" misc_feature order(3745575..3745577,3745581..3745583,3745590..3745595, 3745614..3745616,3745629..3745634,3745656..3745658, 3745662..3745664,3745668..3745676,3745698..3745700, 3745704..3745706,3745710..3745718,3745740..3745742, 3745746..3745748,3745752..3745760,3745782..3745784, 3745788..3745790,3745794..3745802,3745824..3745826, 3745830..3745832,3745836..3745844,3745866..3745868, 3745872..3745874,3745878..3745883,3745893..3745895, 3745899..3745904,3745911..3745928,3745938..3745940) /locus_tag="SF3640" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:240612" gene 3746656..3749628 /locus_tag="SF3641" /db_xref="GeneID:1026248" CDS 3746656..3749628 /locus_tag="SF3641" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709381.1" /db_xref="GeneID:1026248" /translation="MTNLGEDALKWDKDNGVFTAAHGTETTSKITNVKDGDLTTGSTD AVNGSQLKTTNDAVATNTTNIATNTTNISNLTETVTNLGEDALKWDKDNGVFTAAHGN NTASKITNILDGTVTATSSDAINGSQLYDLSSNIATYFGGNASVNTDGVFTGPTYKIG ETNYYNVGDALAAINSSFSTSLGDALLWDATAGKFSAKHGTNGDASVITDVADGEISD SSSDAVNGSQLHGVSSYVVDALGGGAEVNADGTITAPTYTIANADYDNVGDALNAIDT TPDDALLWDADAGENGAFSAAHGKDKTASVITNVANGAISAASSDAINGSQLYTTNKY IADALGGDAEVNADGTITAPTYTIANAEYNNVGDALDALDDNALLWDKTANGGAGAYN ASHDGKASIITNVANGSISEDSTDAVNGSQLNATNMMIEQNTQIINQLAGNTDATYIE ENGAGINYVRTNDNDLAFNDASASGVGATAVGYNAVASGASSVAIGQNSSSTVDTGIA LGSSSVSSRVIAKGSRDTSVTENGVVIGYDTTDGELLGALSIGDDGKYRQIINVADGS EAHDAVTVRQLQNAIGAVATTPTKYFHANSTAEDSLAVGEDSLAMGAKTVVNGNAGIG IGLNTLVLADAINGIAIGSNARANHANSIAMGNGSQTTRGAQTGYTAYNMDAPQNSVG EFSVGSEDGQRQITNVAAGSADTDAVNVGQLKVTDERVAQNTQSITNLNNQVTNLDTR VTNIENGIGDIVTTGSTKYFKTNTDGVDANAQGKDSVAIGSGSIAAADNSVALGTGSV AEEENTISVGSSTNQRRITNVAASVNATDAVNVSQLKSSEAGGVRYDTKADGSIDYSN ITLGGGNGSTTRISNVSAGVNNNDAVNYAQLKQSAQETKQYTDQRMVEMDNKLSKTES KLSGGIASAMAMTGLPQAYTPGASMASIGGGTYNGESAVALGVSMVSANGRWVYKLQG STNSQGEYSAALGAGIQW" misc_feature <3746662..>3747048 /locus_tag="SF3641" /note="Vomp family autotransporter C-terminal domain; Region: VOMP_auto_Cterm; NF033870" /db_xref="CDD:411434" misc_feature 3746956..3749622 /locus_tag="SF3641" /note="Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; Region: Hia; COG5295" /db_xref="CDD:444098" gene 3749996..3751651 /gene="lldP" /locus_tag="SF3642" /db_xref="GeneID:1026261" CDS 3749996..3751651 /gene="lldP" /locus_tag="SF3642" /note="Code: C; COG: COG1620" /codon_start=1 /transl_table=11 /product="L-lactate permease" /protein_id="NP_709382.2" /db_xref="GeneID:1026261" /translation="MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAAS WTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDI IRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLC LIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWR GIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFR FGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEW VINIPVPYLNKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPS DAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLG WLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIAC AAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQAYVLTWMIP" misc_feature 3749996..3751648 /gene="lldP" /locus_tag="SF3642" /note="L-lactate permease; Provisional; Region: PRK10420" /db_xref="CDD:182445" gene 3751651..3752427 /gene="lldR" /locus_tag="SF3643" /db_xref="GeneID:1026271" CDS 3751651..3752427 /gene="lldR" /locus_tag="SF3643" /note="Code: K; COG: COG2186" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor LldR" /protein_id="NP_709383.2" /db_xref="GeneID:1026271" /translation="MIVLPRRLSDEVADRVRALIDEKNLEAGMKLPAERQLAMQLGVS RNSLREALAKLVSEGVLLSRRGGGTFIRWRHDTWSEQNIVQPLKTLMADDPDYSFDIL EARYAIEASTAWHAAMRATPGDKEKIQLCFEATLSEDPDIASQADVRFHLAIAEASHN IVLLQTMRGFFDVLQSSVKHSRQRMYLVPPVFSQLTEQHQAVIDAIFAGDADGARKAM MAHLSFVHTTMKRFDEDQARHARITRLPGEHNEHSREKNA" misc_feature 3751666..3752424 /gene="lldR" /locus_tag="SF3643" /note="DNA-binding transcriptional repressor LldR; Provisional; Region: PRK10421" /db_xref="CDD:236690" gene 3752424..3753614 /gene="lldD" /locus_tag="SF3644" /db_xref="GeneID:1026893" CDS 3752424..3753614 /gene="lldD" /locus_tag="SF3644" /note="Code: C; COG: COG1304" /codon_start=1 /transl_table=11 /product="L-lactate dehydrogenase" /protein_id="NP_709384.1" /db_xref="GeneID:1026893" /translation="MIISAASDYRAAAQRILPPFLFHYMDGGAYSEYTLRRNVEDLSE VALRQRILKNMSDLSLETTLFNEKLSMPVALAPVGLCGMYARRGEVQAAKAADAHGIP FTLSTVSVCPIEEVAPAIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPT PGARYRDAHSGMSGPNAAMRRYLQAVTHPQWAWDVGLNGRPHDLGNISAYLGKPTGLE DYIGWLGNNFDPSISWKDLEWIRDFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHG GRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAFLY ALATAGQAGVANLLNLIEKEMKVAMTLTGAKSISEITQDSLVQGLGKELPTALAPMAK GNAA" misc_feature 3752424..3753563 /gene="lldD" /locus_tag="SF3644" /note="L-lactate dehydrogenase; Provisional; Region: lldD; PRK11197" /db_xref="CDD:183033" gene 3753810..3754283 /gene="yibK" /locus_tag="SF3645" /db_xref="GeneID:1026262" CDS 3753810..3754283 /gene="yibK" /locus_tag="SF3645" /note="Code: J; COG: COG0219" /codon_start=1 /transl_table=11 /product="rRNA methylase" /protein_id="NP_709385.1" /db_xref="GeneID:1026262" /translation="MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRL RRAGLDYHEFTAVTRHHDYRAFLEAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE TRGLPASILDALPAEQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGALLRD" misc_feature 3753810..3754280 /gene="yibK" /locus_tag="SF3645" /note="tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL; Region: PRK10358" /db_xref="CDD:182406" misc_feature order(3753858..3753860,3753867..3753872,3753876..3753881, 3753885..3753887,3753957..3753959,3753966..3753968, 3754065..3754070,3754170..3754184,3754194..3754205, 3754209..3754214,3754221..3754226,3754233..3754238, 3754242..3754247) /gene="yibK" /locus_tag="SF3645" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349967" misc_feature order(3754041..3754049,3754104..3754115,3754119..3754127, 3754167..3754175,3754179..3754181,3754194..3754202, 3754206..3754208,3754215..3754217) /gene="yibK" /locus_tag="SF3645" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:349967" gene complement(3754336..3755157) /gene="cysE" /locus_tag="SF3646" /db_xref="GeneID:1026265" CDS complement(3754336..3755157) /gene="cysE" /locus_tag="SF3646" /note="Code: E; COG: COG1045" /codon_start=1 /transl_table=11 /product="serine acetyltransferase" /protein_id="NP_709386.1" /db_xref="GeneID:1026265" /translation="MSCEELEIVWNNIKAEARTLADCEPMLASFYHATLLKHENLGSA LSYMLANKLSSPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPL LYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHAT GIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGA KIGAGSVVLQPVPPHTTAAGVPARIVGKPDSDKPSMDMDQHFNGINHTFEYGDGI" misc_feature complement(3754339..3755157) /gene="cysE" /locus_tag="SF3646" /note="serine acetyltransferase; Provisional; Region: cysE; PRK11132" /db_xref="CDD:182987" misc_feature complement(order(3754477..3754479,3754483..3754485, 3754492..3754494,3754582..3754584,3754684..3754686, 3754729..3754731,3754735..3754737)) /gene="cysE" /locus_tag="SF3646" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100045" misc_feature complement(order(3754438..3754440,3754453..3754455, 3754477..3754479,3754483..3754485,3754492..3754497, 3754501..3754503,3754546..3754548,3754579..3754584, 3754603..3754608,3754624..3754629,3754684..3754689)) /gene="cysE" /locus_tag="SF3646" /note="active site" /db_xref="CDD:100045" misc_feature complement(order(3754579..3754584,3754606..3754608, 3754684..3754689)) /gene="cysE" /locus_tag="SF3646" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100045" misc_feature complement(order(3754438..3754440,3754453..3754455, 3754477..3754479,3754483..3754485,3754492..3754497, 3754501..3754503,3754546..3754548,3754603..3754608, 3754624..3754629)) /gene="cysE" /locus_tag="SF3646" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100045" gene complement(3755237..3756256) /gene="gpsA" /locus_tag="SF3647" /db_xref="GeneID:1024433" CDS complement(3755237..3756256) /gene="gpsA" /locus_tag="SF3647" /note="Code: C; COG: COG0240" /codon_start=1 /transl_table=11 /product="NAD(P)H-dependent glycerol-3-phosphate dehydrogenase" /protein_id="NP_709387.1" /db_xref="GeneID:1024433" /translation="MNQRNASMTVIGAGSYGTALAITLARNGHEVVLWGHDPEHIATL ERDRCNAAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFGEVLRQIKPLMRPD ARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTD QTFADDLQQLLHCGKSFRVYSNPDFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTAL ITRGLAEMSRLGAALGADPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVQSA QEKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKD ERSSH" misc_feature complement(3755267..3756241) /gene="gpsA" /locus_tag="SF3647" /note="NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Region: gpsA; PRK00094" /db_xref="CDD:234629" gene complement(3756256..3756723) /gene="secB" /locus_tag="SF3648" /db_xref="GeneID:1026249" CDS complement(3756256..3756723) /gene="secB" /locus_tag="SF3648" /note="Code: N; COG: COG1952" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecB" /protein_id="NP_709388.1" /db_xref="GeneID:1026249" /translation="MSEQNNTEMTFQIQRIYTKDISFEAPNAPHVFQKDWQPEVKLDL DTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQGGIFSIAGIEGTQMAHCLGAYC PNILFPYARECITSMVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA" misc_feature complement(3756271..3756723) /gene="secB" /locus_tag="SF3648" /note="preprotein translocase subunit SecB; Validated; Region: PRK05751" /db_xref="CDD:180234" misc_feature complement(order(3756493..3756495,3756499..3756501, 3756652..3756654,3756664..3756666)) /gene="secB" /locus_tag="SF3648" /note="SecA binding site [active]" /db_xref="CDD:238312" misc_feature complement(order(3756484..3756486,3756490..3756492, 3756496..3756498,3756502..3756504)) /gene="secB" /locus_tag="SF3648" /note="Preprotein binding site [active]" /db_xref="CDD:238312" gene complement(3756786..3757037) /gene="grxC" /locus_tag="SF3649" /db_xref="GeneID:1026266" CDS complement(3756786..3757037) /gene="grxC" /locus_tag="SF3649" /note="Code: O; COG: COG0695" /codon_start=1 /transl_table=11 /product="glutaredoxin" /protein_id="NP_709389.1" /db_xref="GeneID:1026266" /translation="MANVEIYTKETCPYCHRAKALLSSKGVSFQELPIDGNAAKREEM IKRSGCTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLK" misc_feature complement(3756789..3757037) /gene="grxC" /locus_tag="SF3649" /note="glutaredoxin 3; Provisional; Region: PRK10638" /db_xref="CDD:182607" misc_feature complement(order(3756879..3756884,3756996..3757004, 3757011..3757013)) /gene="grxC" /locus_tag="SF3649" /note="GSH binding site [chemical binding]; other site" /db_xref="CDD:239510" misc_feature complement(order(3756993..3756995,3757002..3757004)) /gene="grxC" /locus_tag="SF3649" /note="catalytic residues [active]" /db_xref="CDD:239510" gene complement(3757179..3757610) /gene="yibN" /locus_tag="SF3650" /db_xref="GeneID:1026280" CDS complement(3757179..3757610) /gene="yibN" /locus_tag="SF3650" /note="Code: P; COG: COG0607" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709390.2" /db_xref="GeneID:1026280" /translation="MQEIMQFVGRHPILSIAWIALLVAVLVTTFKSLTSKVKVITRGE ATRLINKEDAVVVDLRQRDDFRKGHIAGSINLLPSEIKANNVGELEKHKDKSVIVVDG SGMQCQEPANALTKAGFAQVFVLKEGVAGWAGENLPLVRGK" misc_feature complement(3757182..3757508) /gene="yibN" /locus_tag="SF3650" /note="Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Region: PspE; COG0607" /db_xref="CDD:440372" gene 3757855..3759399 /gene="yibO" /locus_tag="SF3651" /db_xref="GeneID:1026259" CDS 3757855..3759399 /gene="yibO" /locus_tag="SF3651" /note="Code: G; COG: COG0696" /codon_start=1 /transl_table=11 /product="2,3-bisphosphoglycerate-independent phosphoglycerate mutase" /protein_id="NP_709391.2" /db_xref="GeneID:1026259" /translation="MSVSKKPMVLVILDGYGYREEQQDNAIFSAKTPVMDALWANRPH TLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKDRAFFANPVLAGA VHKAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR SAESSLKKFEEKFAALGKGRVASIIGRYYAMDRDNRWDRVEKAYDLLTLAQGEFQADT AVAGLQAAYARDENDEFVKATVIRAEGQPDAAMEDGDALIFMNFRADRAREITRAFVN ADFDGFARKKVVNVDFVMLTEYAADIKTAVAYPPASLVNTFGEWMAKNDKTQLRISET EKYAHVTFFFNGGVEESFKGEDRILINSPKVATYDLQPEMSSAELTEKLVAAIKSGKY DTIICNYPNGDMVGHTGVMEAAVKAVEALDHCVEEVAKAVESVGGQLLITADHGNAEQ MRDPATGQAHTAHTNLPVPLIYVGDKNVKAVAGGKLSDIAPTMLSLMGMEIPQEMTGK PLFIVE" misc_feature 3757858..3759390 /gene="yibO" /locus_tag="SF3651" /note="2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Region: PRK05434" /db_xref="CDD:235463" gene 3759433..3760692 /gene="yibP" /locus_tag="SF3652" /db_xref="GeneID:1026225" CDS 3759433..3760692 /gene="yibP" /locus_tag="SF3652" /note="Code: M; COG: COG0739" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709392.4" /db_xref="GeneID:1026225" /translation="MTRAVKPRRFAIRPIIYASVLSAGVLLCAFSAHADERDQLKSIQ ADIAAKERAVRQKQQQRASLLAQLKKQEEAISEATRKLRETQNTLNQLNKQIDEMNAS IAKLEQQKAAQERSLAAQLDAAFRQGEHTGIQLILSGEESQRGQRLQAYFGYLNQARQ ETIAQLKQTREEVTMQRAELEEKQSEQQTLLYEQRAQQAKLTQALNERKKTLAGLESS IQQGQQQLSELRANESRLRNSIARAEAAAKARAEREAREAQAVRERQKEATRKGTTYK PTESEKSLMSRTGGLGAPRGQAFWPVRGPTLHRYGEQLQGELRWKGMVIGASEGTEVK AIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGSQVRAGQPIALVGSS GGQGRPSLYFEIRRQGQAVNPQPWLGR" misc_feature 3759433..3760689 /gene="yibP" /locus_tag="SF3652" /note="AmiB activator; Provisional; Region: PRK11637" /db_xref="CDD:236942" gene 3760822..3761655 /gene="yibQ" /locus_tag="SF3653" /db_xref="GeneID:1026215" CDS 3760822..3761655 /gene="yibQ" /locus_tag="SF3653" /note="Code: S; COG: COG2861" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709393.2" /db_xref="GeneID:1026215" /translation="MLAMPSAISVAVLPDSPHAREMATKAHNSGHEVLIHLPMAPLSK QPLEKNTLRPEMSSDEIERIIRSAVNNVPYAVGINNHMGSKMTSNLFGMQKVMQALER YNLYFLDSVTIGNTQAMRAAQGTGVKVIKRKVFLDDSQNEADIRVQFNRAIDLARRNG STIAIGHPHPSTVRVLQQMVYNLPPDITLVKASSLLNEPQVDTSTPPKNAVPDAPRNP FRGVKLCKPKKPIEPVYANRFFEVLSESISQSTLIVYFQHQWQGWGKQPEAAKFNASA N" misc_feature <3760822..3761412 /gene="yibQ" /locus_tag="SF3653" /note="Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family [Carbohydrate transport and metabolism]; Region: YibQ; COG2861" /db_xref="CDD:442108" mobile_element complement(3761849..3762616) /mobile_element_type="insertion sequence:IS1" gene complement(3761864..3762259) /gene="insB" /locus_tag="SF3654" /db_xref="GeneID:1026263" CDS complement(3761864..3762259) /gene="insB" /locus_tag="SF3654" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709394.1" /db_xref="GeneID:1026263" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3761867..3762256) /gene="insB" /locus_tag="SF3654" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3762286..3762561) /gene="insA" /locus_tag="SF3655" /db_xref="GeneID:1026258" CDS complement(3762286..3762561) /gene="insA" /locus_tag="SF3655" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709395.1" /db_xref="GeneID:1026258" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3762289..3762540) /gene="insA" /locus_tag="SF3655" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(3762791..3763816) /gene="tdh" /locus_tag="SF3656" /db_xref="GeneID:1026270" CDS complement(3762791..3763816) /gene="tdh" /locus_tag="SF3656" /note="Code: ER; COG: COG1063" /codon_start=1 /transl_table=11 /product="L-threonine 3-dehydrogenase" /protein_id="NP_709396.1" /db_xref="GeneID:1026270" /translation="MKALSKLKAEEGIWMTDVPVPELGHNDLLIKIRKTAICGTDVHI YNWDEWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGG RTHLCRNTIGVGVNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSF DLVGEDVLVSGAGPIGIMAAAVAKHVGARNVVITDVNEYRLELARKMGITRAVNVAKE NLNDVMAELGMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKV IFKGLFIKGIYGREMFETWYKMAALIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSG KVILSWD" misc_feature complement(3762794..3763816) /gene="tdh" /locus_tag="SF3656" /note="L-threonine 3-dehydrogenase; Validated; Region: tdh; PRK05396" /db_xref="CDD:180054" misc_feature complement(order(3762953..3762961,3763028..3763033, 3763097..3763102,3763172..3763174,3763217..3763219, 3763229..3763234,3763289..3763306,3763361..3763363, 3763373..3763375,3763688..3763690,3763697..3763705)) /gene="tdh" /locus_tag="SF3656" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176178" gene complement(3763826..3765022) /gene="kbl" /locus_tag="SF3657" /db_xref="GeneID:1026224" CDS complement(3763826..3765022) /gene="kbl" /locus_tag="SF3657" /note="Code: H; COG: COG0156" /codon_start=1 /transl_table=11 /product="2-amino-3-ketobutyrate CoA ligase" /protein_id="NP_709397.1" /db_xref="GeneID:1026224" /translation="MRGEFYQQLTNDLETARAEGLFKEERIITSAQQADITVADGSHV INFCANNYLGLANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGM EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMQE LEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV GENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNS LAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGD AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK QLGVIA" misc_feature complement(3763832..3765022) /gene="kbl" /locus_tag="SF3657" /note="2-amino-3-ketobutyrate coenzyme A ligase; Provisional; Region: PRK06939" /db_xref="CDD:235893" misc_feature complement(order(3763919..3763921,3764291..3764293, 3764300..3764302,3764384..3764389,3764393..3764395, 3764465..3764470,3764480..3764482,3764615..3764617, 3764687..3764695,3764873..3764875)) /gene="kbl" /locus_tag="SF3657" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:99747" misc_feature complement(order(3764291..3764293,3764300..3764302, 3764384..3764389,3764393..3764395,3764468..3764470, 3764480..3764482,3764615..3764617,3764687..3764695)) /gene="kbl" /locus_tag="SF3657" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99747" misc_feature complement(3764291..3764293) /gene="kbl" /locus_tag="SF3657" /note="catalytic residue [active]" /db_xref="CDD:99747" gene complement(3765297..3766154) /gene="htrL" /locus_tag="SF3658" /db_xref="GeneID:1026279" CDS complement(3765297..3766154) /gene="htrL" /locus_tag="SF3658" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709398.1" /db_xref="GeneID:1026279" /translation="MKSSTTIITAYFDIGRGDWTANKGFREKLARSVDVYFSYFERLA ALENEMIIFTSPDLKPRIEAIRNGKPTTVIVIDIKKKFRYIRSRIEKIQKDESFTNRL EPRQLKNPEYWSPEYVLVCNLKAYFVNKAINMGLVKTPLVAWIDFGYCRKPNVTRGLK IWDFPFDENKMHLFTIKKGLTVTSQQQAFDFMIGNHVYIIGGAIVGSQHKWKEFYKLV LESQKITLNNNIVDDDQGIFVMCYYKRSDLFNLNYLGRGKWFDLFRCFRSNTLGAKMQ ALRIFLSRK" misc_feature complement(3765300..3766154) /gene="htrL" /locus_tag="SF3658" /note="hypothetical protein; Provisional; Region: PRK11346" /db_xref="CDD:183093" gene 3766458..3767390 /gene="rfaD" /locus_tag="SF3659" /db_xref="GeneID:1026210" CDS 3766458..3767390 /gene="rfaD" /locus_tag="SF3659" /note="Code: MG; COG: COG0451" /codon_start=1 /transl_table=11 /product="ADP-L-glycero-D-manno-heptose-6-epimerase" /protein_id="NP_709399.1" /db_xref="GeneID:1026210" /translation="MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD LDIADYMDKEDFLIQIMAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLH YCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANS QIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA DVNLWFLENGVSGIFNLGTGRAESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFT QADLTNLRAAGYDKPFKTVAEGVTEYMAWLNRDA" misc_feature 3766458..3767381 /gene="rfaD" /locus_tag="SF3659" /note="ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional; Region: rfaD; PRK11150" /db_xref="CDD:182998" misc_feature order(3766470..3766475,3766482..3766490,3766545..3766553, 3766569..3766571,3766614..3766616,3766680..3766688, 3766692..3766694,3766719..3766721,3766731..3766733, 3766743..3766745,3766797..3766805,3766875..3766877, 3766887..3766889,3766956..3766961,3766965..3766967, 3766986..3766991) /gene="rfaD" /locus_tag="SF3659" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187559" misc_feature order(3766554..3766559,3766563..3766568,3766572..3766574, 3766581..3766586,3766590..3766607,3766611..3766613, 3766707..3766718,3766725..3766727,3766737..3766739, 3766749..3766751,3766848..3766850,3766860..3766874, 3766881..3766883,3766893..3766895,3766902..3766907, 3766914..3766916) /gene="rfaD" /locus_tag="SF3659" /note="homopentamer interface [polypeptide binding]; other site" /db_xref="CDD:187559" misc_feature order(3766698..3766700,3766962..3766964,3766995..3767003, 3767007..3767009,3767016..3767018,3767082..3767084, 3767184..3767186) /gene="rfaD" /locus_tag="SF3659" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187559" misc_feature order(3766734..3766736,3766803..3766805,3766875..3766877, 3766887..3766889) /gene="rfaD" /locus_tag="SF3659" /note="active site" /db_xref="CDD:187559" gene 3767400..3768446 /gene="rfaF" /locus_tag="SF3660" /db_xref="GeneID:1026277" CDS 3767400..3768446 /gene="rfaF" /locus_tag="SF3660" /note="Code: M; COG: COG0859" /codon_start=1 /transl_table=11 /product="ADP-heptose--LPS heptosyltransferase" /protein_id="NP_709400.1" /db_xref="GeneID:1026277" /translation="MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPL LSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKRYDRAYVLPNSFKSALVPFFAGI PHRTGWRGEMRYGLLNDVRVLDKEAWPLMVERYVALAYDKGIMRTAQDLPQPLLWPQL QVSEGEKSYTCNQFSLSSERPMIGFCPGAEFGPAKRWPHYHYAELAKQLIDEGYQVVL FGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQAVILIAACKAIVTNDSGLMHVA AALNRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDAAEGYHQSLIDITPQR VLEELNALLLQEEA" misc_feature 3767400..3768443 /gene="rfaF" /locus_tag="SF3660" /note="ADP-heptose--LPS heptosyltransferase RfaF; Region: PRK10916" /db_xref="CDD:182835" misc_feature order(3767952..3767957,3768054..3768056,3768162..3768167, 3768201..3768203,3768210..3768215,3768222..3768224) /gene="rfaF" /locus_tag="SF3660" /note="putative active site [active]" /db_xref="CDD:340821" gene 3768480..3769442 /gene="rfaC" /locus_tag="SF3661" /db_xref="GeneID:1026255" CDS 3768480..3769442 /gene="rfaC" /locus_tag="SF3661" /note="Code: M; COG: COG0859" /codon_start=1 /transl_table=11 /product="ADP-heptose--LPS heptosyltransferase" /protein_id="NP_709401.2" /db_xref="GeneID:1026255" /translation="MGDVLHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERV IPVAIRRWRKAWFSAPIKAERKAFREALQAENYDAVIDAQGLVKSAALVTRLAHGVKH GLDWQTAREPLASLFYNCKHHIAKQQHAVERTRELFAKSLGYSKPQTQGDYAIAQHFL TNLPTDAGEYAVFLHATTRDDKHWPEEHWRELIGLLADSGIRIKLPWGAPHEEERAKR LAEGFAYVEVLPKMSLEGVARVLAGAKFVVSVDTGLSHLTAALDRPNITVYGPTDPGL IGGYGKNQVECRSTSMSLADLPAQTVFQNLNLEIITNKLTSEIR" misc_feature 3768480..3769412 /gene="rfaC" /locus_tag="SF3661" /note="lipopolysaccharide heptosyltransferase RfaC; Region: PRK10964" /db_xref="CDD:236809" misc_feature order(3768996..3769001,3769095..3769097,3769188..3769193, 3769227..3769229,3769236..3769241,3769248..3769250) /gene="rfaC" /locus_tag="SF3661" /note="putative active site [active]" /db_xref="CDD:340821" gene 3769439..3770647 /gene="waaI" /locus_tag="SF3662" /db_xref="GeneID:1026218" CDS 3769439..3770647 /gene="waaI" /locus_tag="SF3662" /note="Code: M; COG: COG3307" /codon_start=1 /transl_table=11 /product="O-antigen ligase RfaL" /protein_id="NP_709402.1" /db_xref="GeneID:1026218" /translation="MTSTLFFSLEKKNWIAYWNRALVFLFITTYFLGGITRYKHLIVI LMTITTIVYLCKRPKHYLSLFKTFLFGSVAILTIAALLSLLQSPDAGASMKEVFKAII ENTLLCTIAIPVILRDEKREDVEKIVFFSFISALGLRCFSELITYYKDYQQGIMPFAD YRHRSISDSMVFLFPALLNLWLIKSAKYRISFVVLSVIFIFLILGTLSRGAWLSVLVI GLIWILMFKQWKLLLVGVMVSIIALSVIFTHKEMTAKLTYKLQQTNSSYRYANGTQGS ALDLILENPVIGYGYGNVAYKDVYNKRVIDYPEWTFRQSIGPHNFALFIWFGTGLLGL VSLMMLYCAILKECIKNGVKNKYRSPYNAYYIILLSFIGYFVIRGNVEQIEPNLLGVY AGLLLAMKNK" misc_feature 3769454..3770644 /gene="waaI" /locus_tag="SF3662" /note="O-antigen ligase RfaL; Provisional; Region: PRK15487" /db_xref="CDD:185384" gene complement(3770683..3771825) /gene="waaD" /locus_tag="SF3663" /db_xref="GeneID:1026209" CDS complement(3770683..3771825) /gene="waaD" /locus_tag="SF3663" /note="Code: M; COG: COG0438" /codon_start=1 /transl_table=11 /product="lipopolysaccharide 1,2-N-acetylglucosaminetransferase" /protein_id="NP_709403.1" /db_xref="GeneID:1026209" /translation="MVDKIIFTVTPIFSIPPRGAAAVETWMYQVAQRTNFPNRIVCIK NPGYSNYTFVNDNCSIHRVGFSRIYKRLFQKWTRLDPLPYSQRILNIAHDFPITKESV IVVHNSMKLYTQIRKLAPQARVVIHMHNAFEPKLLEQNVKMIVPSLYLKKYYQSYLAN ADIEIVPNGIDLETYQSNFQPITRSELNISPEEKIIFYAGRIVPDKGILLLMQSFEKL AAAHKNLKLVVIGDYTEMSKSDKGAYQRNVREIAKRLKDRCIMLGSIPPEKMYCYYPL ADLVVIPSQFQEPFCMVAIEAMGAGKPVLVSTRGGMTEFVKENTTGFHLKEPMTADSI SSDILKTLANPELTAVAKQGQDFVFDHYSWDGVTQRFEEVIHNWFE" misc_feature complement(3770686..3771825) /gene="waaD" /locus_tag="SF3663" /note="lipopolysaccharide N-acetylglucosaminyltransferase; Region: PRK15484" /db_xref="CDD:185381" gene complement(3771834..3772847) /gene="waaJ" /locus_tag="SF3664" /db_xref="GeneID:1026232" CDS complement(3771834..3772847) /gene="waaJ" /locus_tag="SF3664" /note="Code: M; COG: COG1442" /codon_start=1 /transl_table=11 /product="UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase" /protein_id="NP_709404.1" /db_xref="GeneID:1026232" /translation="MDFKHLTQFKDIIELDKRPVKLDERETFNVSWGIDENYQVGAAI SIASILEKNKQNKFTFHIIADYLDKEYIELLSQLATKYQTVIKLYHIDSEPLKALPQS NIWPVSIYYRLLSFDYFSARLDSLLYLDADIVCKGSLNELIALEFKDEYGAVVIDVDA MQSKSAERLCNEDFNGSYFNSGVMYINLREWLKQRLTEKFFDLLSDESIIKKLKYPDQ DILNLMFLHHAKILPRKYNCIYTIKSEFEEKNSEYYTRFINDDTVFIHYTGITKPWHD WANYASADYFRNIYNISPWRNIPYKKAVKKHEHKEKYKHLLYQKKFLDGVFTAIKYNV MKG" misc_feature complement(3771876..3772775) /gene="waaJ" /locus_tag="SF3664" /note="Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]; Region: RfaJ; COG1442" /db_xref="CDD:441051" gene complement(3772872..3773579) /gene="waaY" /locus_tag="SF3665" /db_xref="GeneID:1026216" CDS complement(3772872..3773579) /gene="waaY" /locus_tag="SF3665" /note="Code: T; COG: COG0515" /codon_start=1 /transl_table=11 /product="lipopolysaccharide core biosynthesis protein" /protein_id="NP_709405.1" /db_xref="GeneID:1026216" /translation="MIYNKTINGLKVFIKDNDPFYEQVLNDFLTCRVKTLKVFRSIDD TKVILIDTARGPLVLKVYAPKHKMTERFLKSCIKKDYYENLIYQTDRVRGEGIQSIND YFLLAERKTLNFAHYYIMLIEYIEGVGLNEYLEISEDLKDQLSESIKELHQHGMVSGD PHKGNFIVSEKGLRLIDLSGKKTTAVLKAKDRIDLERHYNIKNELKDFGYTYLIFKKK IKKVIRDVKVKLGLKSK" misc_feature complement(3772893..3773579) /gene="waaY" /locus_tag="SF3665" /note="lipopolysaccharide core heptose(II) kinase RfaY; Region: PRK10359" /db_xref="CDD:182407" gene complement(3773605..3774612) /gene="waaL" /locus_tag="SF3666" /db_xref="GeneID:1026217" CDS complement(3773605..3774612) /gene="waaL" /locus_tag="SF3666" /note="Code: M; COG: COG1442" /codon_start=1 /transl_table=11 /product="lipopolysaccharide 1,3-galactosyltransferase" /protein_id="NP_709406.1" /db_xref="GeneID:1026217" /translation="MSQLNDSDIILFEYNFHYQNIRSKNTLDIAFGIDRNFLFGCGVA IASILLNNREISCEFHVFTDYISDKDKLYFSDLAKQYNSRINIYVINCDKLKSLPSTK NWTYATYFRFIIADYFYHKHEKILYLDADIACKGSIKELLDYQFSTNEIAAVVAERDI EWWQNRASVLTTPQLASGYFNAGFLLINIDEWNLNNISSKAIEMLRDPDWVSKITHLD QDVLNVLLNGKVKFISEKYNTRYSINYELKDKVDNPVNDDTVFIHYVGPTKPWHEWAD YPVSRSFLIAKAASPWSKEDLLKPVNSNQYRYCAKHKFKQKHYMAGIFNYLKYYKEKC F" misc_feature complement(3773608..3774609) /gene="waaL" /locus_tag="SF3666" /note="lipopolysaccharide 3-alpha-galactosyltransferase; Region: PRK15171" /db_xref="CDD:185093" gene complement(3774655..3775461) /gene="waaP" /locus_tag="SF3667" /db_xref="GeneID:1025536" CDS complement(3774655..3775461) /gene="waaP" /locus_tag="SF3667" /codon_start=1 /transl_table=11 /product="lipopolysaccharide core heptose(I) kinase RfaP" /protein_id="NP_709407.1" /db_xref="GeneID:1025536" /translation="MVWMVELKEPFATLWRGKDPFEEVKTLQGEVFRELETRRTLRFE MAGKSYFLKWHRGTTLKEIIKNLLSLRMPVLGADREWNAIHRLRDVGVDTMYGVAFGE KGMNPLTRTSFIITEDLTPTISLEDYCADWATNPPDVRVKRMLIKRVATMVRDMHAAG INHRDCYICHFLLHLPFSGKEEELKISVIDLHRAQLRTRVPGRWRDKDLIGLYFSSMN IGLTQRDIWRFMKVYFAAPLKDILKQEQGLLSQAEAKATKIRERTIRKSL" misc_feature complement(3774658..3775455) /gene="waaP" /locus_tag="SF3667" /note="lipopolysaccharide core heptose(I) kinase RfaP; Provisional; Region: PRK15123" /db_xref="CDD:237915" gene complement(3775445..3776569) /gene="waaG" /locus_tag="SF3668" /db_xref="GeneID:1026220" CDS complement(3775445..3776569) /gene="waaG" /locus_tag="SF3668" /note="Code: M; COG: COG0438" /codon_start=1 /transl_table=11 /product="LPS alpha1,3-glucosyltransferase" /protein_id="NP_709408.1" /db_xref="GeneID:1026220" /translation="MIVAFCLYKYFPFGGLQRDFMRIAQTVAARGHHVRVYTQSWEGE CPDVFEVIKVPVKSHTNHGRNAEYFAWVQKHLREHPVDKVVGFNKMPGLDVYYAADVC YAEKVAQEKGFFYRLTSRYRHYAAFERATFEQGKPTQLLMLTDKQIADFQKHYQTEAE RFHILPPGIYPDRKYSQQPANSREIFRKKNGITEQQYLLLQVGSDFTRKGADRSIEAL ASLPDSLRHNTLLYVVGQDKPRKFEALAEKRGVRSNVHFFSGRNDVSELMAAADLLLH PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIVDANCGEAIAEPFRQETLNEILRKA LTQSSLRQAWAENARHYADTQDLYSLPEKAADIITGGLDG" misc_feature complement(3775466..3776563) /gene="waaG" /locus_tag="SF3668" /note="phosphatidyl-myo-inositol mannosyltransferase; Region: GT4_PimA-like; cd03801" /db_xref="CDD:340831" gene complement(3776566..3777624) /gene="waaQ" /locus_tag="SF3669" /db_xref="GeneID:1026231" CDS complement(3776566..3777624) /gene="waaQ" /locus_tag="SF3669" /note="Code: M; COG: COG0859" /codon_start=1 /transl_table=11 /product="lipopolysaccharide core biosynthesis protein" /protein_id="NP_709409.1" /db_xref="GeneID:1026231" /translation="MDKPFRRILLIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQ DTIPILSENPEINALYGIKNKKAKASEKIANFFHLIKVLRANKYDLIVNLTDQWMVAI LVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQGGNVVESNLSVLTPLGLDSLVKQT TMSYPPASWKRMRRELDHAGVGQNYVVIQPTARQIFKCWDNAKFSAVIDALHARGYEV VLTSGPDKDDLACVNEIAQGCQTPPVTALAGKVTFPELGALIDHAQLFIGVDSAPAHI AAAVNTPLISLFGATDHIFWRPWSNNMIQFWAGDYREMPTRDQRDRNEMYLSVIPAAD VIAAVDKLLPSSTTGTSL" misc_feature complement(3776569..3777624) /gene="waaQ" /locus_tag="SF3669" /note="lipopolysaccharide core biosynthesis protein; Provisional; Region: PRK10422" /db_xref="CDD:182447" misc_feature complement(order(3776797..3776799,3776806..3776811, 3776818..3776820,3776854..3776859,3776962..3776964, 3777058..3777063)) /gene="waaQ" /locus_tag="SF3669" /note="putative active site [active]" /db_xref="CDD:340821" mobile_element complement(3777967..3778734) /mobile_element_type="insertion sequence:IS1" gene complement(3777982..3778377) /gene="insB" /locus_tag="SF3670" /db_xref="GeneID:1026240" CDS complement(3777982..3778377) /gene="insB" /locus_tag="SF3670" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709410.1" /db_xref="GeneID:1026240" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKPLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3777985..3778374) /gene="insB" /locus_tag="SF3670" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3778404..3778679) /gene="insA" /locus_tag="SF3671" /db_xref="GeneID:1026894" CDS complement(3778404..3778679) /gene="insA" /locus_tag="SF3671" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709411.1" /db_xref="GeneID:1026894" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3778407..3778658) /gene="insA" /locus_tag="SF3671" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3778853..3780130 /gene="kdtA" /locus_tag="SF3672" /db_xref="GeneID:1026235" CDS 3778853..3780130 /gene="kdtA" /locus_tag="SF3672" /note="Code: M; COG: COG1519" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonic acid transferase" /protein_id="NP_709412.1" /db_xref="GeneID:1026235" /translation="MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRH PLKPGGIMLHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGKDVQ HVYLPYDLPDALNRFLNKVDPKLVLIMETELWPNLIAALHKRKIPLVIANARLSARSA AGYAKLGKFVRRLLRRITLIAAQNEEDGARFVALGAKNNQVTVTGSLKFDISVTPQLA AKAVTLRRQWAPHRPVWIATSTHEGEESVVIAAHQALLQQFPNLLLILVPRHPERFPD AINLVRQAGLSYITRSSGEVPSTSTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGH NPLEAAAHAIPVLMGPHTFNFKDICARLEQASGLITVTDATTLAKEVSSLLTDAVYRS FYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH" misc_feature 3778853..3780124 /gene="kdtA" /locus_tag="SF3672" /note="3-deoxy-D-manno-octulosonic-acid transferase; Reviewed; Region: PRK05749" /db_xref="CDD:235589" gene 3780138..3780617 /gene="coaD" /locus_tag="SF3673" /db_xref="GeneID:1026203" CDS 3780138..3780617 /gene="coaD" /locus_tag="SF3673" /note="Code: H; COG: COG0669" /codon_start=1 /transl_table=11 /product="phosphopantetheine adenylyltransferase" /protein_id="NP_709413.1" /db_xref="GeneID:1026203" /translation="MQKRAIYPGTFDPITNGHIDIVTRATQMFDHVILAIAASPSKKP MFTLEERVALAQQATAHLGNVEVVGFSDLMANFARNQHATVLIRGLRAVADFEYEMQL AHMNRHLMPELESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPENVHQALMAKLA" misc_feature 3780144..3780614 /gene="coaD" /locus_tag="SF3673" /note="Phosphopantetheine adenylyltransferase [Coenzyme transport and metabolism]; Region: CoaD; COG0669" /db_xref="CDD:440433" gene complement(3780656..3781465) /gene="mutM" /locus_tag="SF3674" /db_xref="GeneID:1026213" CDS complement(3780656..3781465) /gene="mutM" /locus_tag="SF3674" /note="Code: L; COG: COG0266" /codon_start=1 /transl_table=11 /product="formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase" /protein_id="NP_709414.2" /db_xref="GeneID:1026213" /translation="MPELPEVETSRRGIEPHLVGATILHAVVRNGRLRWPVSEEIYRL SDQPVLSVQRRAKYLLLELPEGWIIIHLGMSGSLRILPEELPPEKHDHVDLVMSNGKV LRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDDFNGEYLHQKCAKKKTAIKPWLMD NKLVVGVGNIYASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLK DFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRQCQK" misc_feature complement(3780659..3781465) /gene="mutM" /locus_tag="SF3674" /note="bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase; Region: PRK01103" /db_xref="CDD:234899" gene complement(3781563..3781730) /gene="rpmG" /locus_tag="SF3675" /db_xref="GeneID:1026176" CDS complement(3781563..3781730) /gene="rpmG" /locus_tag="SF3675" /note="Code: J; COG: COG0267" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L33" /protein_id="NP_709415.1" /db_xref="GeneID:1026176" /translation="MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVR QHVIYKEAKIK" misc_feature complement(3781572..3781730) /gene="rpmG" /locus_tag="SF3675" /note="50S ribosomal protein L33; Validated; Region: rpmG; PRK00595" /db_xref="CDD:179075" gene complement(3781751..3781987) /gene="rpmB" /locus_tag="SF3676" /db_xref="GeneID:1026222" CDS complement(3781751..3781987) /gene="rpmB" /locus_tag="SF3676" /note="Code: J; COG: COG0227" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L28" /protein_id="NP_709416.1" /db_xref="GeneID:1026222" /translation="MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEK RFVTLRVSAKGMRVIDKKGIDTVLAELRARGEKY" misc_feature complement(3781784..3781987) /gene="rpmB" /locus_tag="SF3676" /note="Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Region: RpmB; COG0227" /db_xref="CDD:439997" gene complement(3782204..3782872) /gene="radC" /locus_tag="SF3677" /db_xref="GeneID:1026188" CDS complement(3782204..3782872) /gene="radC" /locus_tag="SF3677" /note="Code: L; COG: COG2003" /codon_start=1 /transl_table=11 /product="DNA repair protein" /protein_id="NP_709417.4" /db_xref="GeneID:1026188" /translation="MKNNAQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTL AKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQLKGIAELARRYYNVRMREESPLL SPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHSRLFSGTLNHVEVHPREIIREAI KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAE RGWI" misc_feature complement(3782207..3782851) /gene="radC" /locus_tag="SF3677" /note="DNA repair protein RadC; Region: PRK00024" /db_xref="CDD:178801" gene 3782972..3784264 /gene="dfp" /locus_tag="SF3678" /db_xref="GeneID:1026229" CDS 3782972..3784264 /gene="dfp" /locus_tag="SF3678" /note="Code: H; COG: COG0452" /codon_start=1 /transl_table=11 /product="flavoprotein" /protein_id="NP_709418.3" /db_xref="GeneID:1026229" /translation="MKARQQKYCDKIANFWCHPTGKIIMSLAGKKIVLGVSGGIAAYK TPELVRRLRDRGADVRVAMTEAAKAFITPLSLQAVSGYPVSDSLLDPAAEAAMGHIEL GKWADLVILAPATADLIARVAAGMANDLVSTICLATPAPVAVLPAMNQQMYRAAATQH NLEVLASRGLLIWGPDSGSQACGDIGPGRMLDPLTIVDMAVAHFSPVNDLKHLNIMIT AGPTREPLDPVRYISNHSSGKMGFAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVM TALAMEAAVNASVQQQNIFIGCAAVADYRAATVAPEKIKKQATQGDELTIKMVKNPDI VAGVAALKDHRPYVVGFAAETNNVEEYARQKRIRKNLDLICANDVSQPTQGFNSDNNA LHLFWQDGDKVLPLERKELLGQLLLDEIVTRYDEKNRR" misc_feature 3783047..3784249 /gene="dfp" /locus_tag="SF3678" /note="Phosphopantothenoylcysteine synthetase/decarboxylase CoaBC [Coenzyme transport and metabolism]; Region: CoaBC; COG0452" /db_xref="CDD:440221" gene 3784242..3784700 /gene="dut" /locus_tag="SF3679" /db_xref="GeneID:1026233" CDS 3784242..3784700 /gene="dut" /locus_tag="SF3679" /note="Code: F; COG: COG0756" /codon_start=1 /transl_table=11 /product="deoxyuridine 5'-triphosphate nucleotidohydrolase" /protein_id="NP_709419.1" /db_xref="GeneID:1026233" /translation="MMKKIDVKILDPRVRKEFPLPTYATSGSAGLDLRACLDDAVELA PGDTTLVPTGLAIHIADPSLAAMMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMISVW NRGQDSFTIQPGERIAQMIFVPVVQAEFNLVEDFDATDRGEGGFGHSGRQ" misc_feature 3784245..3784697 /gene="dut" /locus_tag="SF3679" /note="dUTP diphosphatase; Region: dut; PRK00601" /db_xref="CDD:234802" misc_feature order(3784326..3784331,3784365..3784367,3784380..3784385, 3784389..3784391,3784440..3784442,3784446..3784463, 3784479..3784487,3784503..3784505,3784512..3784514, 3784533..3784535,3784539..3784541,3784545..3784547, 3784551..3784553,3784563..3784577,3784584..3784586, 3784596..3784598) /gene="dut" /locus_tag="SF3679" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:143638" misc_feature order(3784452..3784460,3784503..3784511,3784518..3784520, 3784530..3784535) /gene="dut" /locus_tag="SF3679" /note="active site" /db_xref="CDD:143638" gene 3784765..3785403 /gene="ttk" /locus_tag="SF3680" /db_xref="GeneID:1026244" CDS 3784765..3785403 /gene="ttk" /locus_tag="SF3680" /note="Code: K; COG: COG1309" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_709420.3" /db_xref="GeneID:1026244" /translation="MPPGKCLFSGVFCNMAEKQTAKRNRREEILQSLALMLESSDGSQ RITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARL RLIVLLLLGFGERNPGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMR EGEGYTTDETLLASQILAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ" misc_feature 3784807..3785391 /gene="ttk" /locus_tag="SF3680" /note="division inhibitor protein; Provisional; Region: slmA; PRK09480" /db_xref="CDD:181894" gene complement(3785440..3786081) /gene="pyrE" /locus_tag="SF3681" /db_xref="GeneID:1026234" CDS complement(3785440..3786081) /gene="pyrE" /locus_tag="SF3681" /note="Code: F; COG: COG0461" /codon_start=1 /transl_table=11 /product="orotate phosphoribosyltransferase" /protein_id="NP_709421.2" /db_xref="GeneID:1026234" /translation="MKSYQRQFIEFALSKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR DLALLGRFYAEALVDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDLDLPYCFNRKEA KDHGEGGNLVGSALQGRVMLVDDVITAGTAIRESMEIIQANGATLAGVLISLDRQERG RGEISAIQEVERDYNCKVISIITLKDLIAYLEEKPEMAEHLAAVKAYREEFGV" misc_feature complement(3785443..3786081) /gene="pyrE" /locus_tag="SF3681" /note="orotate phosphoribosyltransferase; Validated; Region: pyrE; PRK00455" /db_xref="CDD:234771" misc_feature complement(order(3785614..3785616,3785686..3785700, 3785704..3785712,3785863..3785865,3785869..3785871)) /gene="pyrE" /locus_tag="SF3681" /note="active site" /db_xref="CDD:206754" gene complement(3786147..3786863) /gene="rph" /locus_tag="SF3682" /db_xref="GeneID:1026242" CDS complement(3786147..3786863) /gene="rph" /locus_tag="SF3682" /note="Code: J; COG: COG0689" /codon_start=1 /transl_table=11 /product="ribonuclease PH" /protein_id="NP_709422.2" /db_xref="GeneID:1026242" /translation="MRPAGRSNNQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE EGVPRFLKGQGQGWITAEYGMLPRSTHTRNAREAAKGKQGGRTMEIQRLIARALRAAV DLKALGEFTITLDCDVLQADGGTRTASITGACVALADALQKLVENGKLKTNPMKGMVA AVSVGIVNGEAICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFTHEELLTLL ALARGGIESIVATQKAALAN" misc_feature complement(3786153..3786863) /gene="rph" /locus_tag="SF3682" /note="Ribonuclease PH [Translation, ribosomal structure and biogenesis]; Region: Rph; COG0689" /db_xref="CDD:440453" gene 3786990..3787853 /gene="yicC" /locus_tag="SF3683" /db_xref="GeneID:1026198" CDS 3786990..3787853 /gene="yicC" /locus_tag="SF3683" /note="Code: S; COG: COG1561" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709423.1" /db_xref="GeneID:1026198" /translation="MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRS LEPVVRERIRSRLTRGKVECTLRYEPDVSAQGELILNEKLAKQLVTAANWVKMKSDEG EINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRL EGVTAEVVKVRAHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVLLAQRIDVAEEL DRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINAEVTNSAIELKVLI EQMREQIQNIE" misc_feature 3786990..3787850 /gene="yicC" /locus_tag="SF3683" /note="TIGR00255 family protein; Region: TIGR00255" /db_xref="CDD:129357" gene 3788074..3788898 /gene="dinD" /locus_tag="SF3684" /db_xref="GeneID:1026178" CDS 3788074..3788898 /gene="dinD" /locus_tag="SF3684" /codon_start=1 /transl_table=11 /product="DNA-damage-inducible protein D" /protein_id="NP_709424.1" /db_xref="GeneID:1026178" /translation="MNEHHQPFEEIKLINANGAEQWSARQLGKLLGYSEYRHFIPVLT RAKEACENSGHTIDDHFEEILDMVKIGSNAKRALKDIVLSRYACYLVVQNGDPAKPVI AAGQTYFTIQTRRQELADDEAFKQLREDEKRLFLRNELKEHNKQLVEAAQQAGVATAT DFAIFQNHGYQGLYGGLDQKAIHQLKGLKKSQKILDHMGSTELAANLFRATQTEEKLK RDSVNSKQQANTTHFDVGSKVRQTIQELGGTIPEELPTPQVSIKQLENSVKITEKK" misc_feature 3788074..3788895 /gene="dinD" /locus_tag="SF3684" /note="DNA-damage-inducible protein D; Provisional; Region: dinD; PRK11525" /db_xref="CDD:183178" gene 3789135..3789806 /gene="yicG" /locus_tag="SF3685" /db_xref="GeneID:1026237" CDS 3789135..3789806 /gene="yicG" /locus_tag="SF3685" /note="Code: S; COG: COG2860" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709425.1" /db_xref="GeneID:1026237" /translation="MTMRTNRYPARQIFRERTMLLHILYLVGITAEAMTGALAAGRRR MDTFGVIIIATATAIGGGSVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPY LRKVFLVLDALGLVVFSIIGAQVALDMGHGPIIAVVAAVTTGVFGGVLRDMFCKRIPL VFQKELYAGVSFASAVLYIALQHYVSNHDVVIISTLVFGFFARLLALRLKLGLPVFYY SHEGH" misc_feature 3789189..3789734 /gene="yicG" /locus_tag="SF3685" /note="Uncharacterized membrane protein YeiH [Function unknown]; Region: YadS; COG2860" /db_xref="CDD:442107" gene complement(3789803..3791485) /gene="ligB" /locus_tag="SF3686" /db_xref="GeneID:1024283" CDS complement(3789803..3791485) /gene="ligB" /locus_tag="SF3686" /note="Code: L; COG: COG0272" /codon_start=1 /transl_table=11 /product="NAD-dependent DNA ligase LigB" /protein_id="NP_709426.2" /db_xref="GeneID:1024283" /translation="MKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQW DDDYWKEGKSEVEDGVYDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRK MADKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSL ISAVLQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQGNSDTLNSL AVFVWAWPDGPQLMTDRLKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVT DGVVVRGAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLA PVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTP PENRFNPLTCYFASDVCQEQFISRLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFS WLLLTPEQLQNTPGIAKSKSAQLWHQFNLARNQPFTRWVMAMGIPLTRAALNASDERS WSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFEP" misc_feature complement(3789806..3791485) /gene="ligB" /locus_tag="SF3686" /note="NAD-dependent DNA ligase LigB; Region: ligB; PRK08097" /db_xref="CDD:236150" gene complement(3791346..3791609) /locus_tag="SF3687" /db_xref="GeneID:1026223" CDS complement(3791346..3791609) /locus_tag="SF3687" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709427.1" /db_xref="GeneID:1026223" /translation="MPVIYCNKDDSQEASSQTPFLPLGFAFTTLYICQPDYSGGEDES MDGDINKYLVLAIICVGGLSGLVASQSTGRNFPPATANKTVGR" gene 3791743..3792366 /gene="gmk" /locus_tag="SF3688" /db_xref="GeneID:1026187" CDS 3791743..3792366 /gene="gmk" /locus_tag="SF3688" /note="Code: F; COG: COG0194" /codon_start=1 /transl_table=11 /product="guanylate kinase" /protein_id="NP_709428.2" /db_xref="GeneID:1026187" /translation="MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP RPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLD IDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY AEYDYLIVNDDFDTALTDLKTIIRAERLRMSRQKQRHDALISKLLAD" misc_feature 3791743..3792360 /gene="gmk" /locus_tag="SF3688" /note="guanylate kinase; Provisional; Region: gmk; PRK00300" /db_xref="CDD:234719" misc_feature order(3791773..3791775,3791791..3791793,3791845..3791847, 3791866..3791868,3791875..3791877,3791902..3791904, 3791971..3791973,3791986..3791988) /gene="gmk" /locus_tag="SF3688" /note="catalytic site [active]" /db_xref="CDD:238026" misc_feature order(3791773..3791775,3791791..3791793) /gene="gmk" /locus_tag="SF3688" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:238026" gene 3792421..3792696 /gene="rpoZ" /locus_tag="SF3689" /db_xref="GeneID:1024175" CDS 3792421..3792696 /gene="rpoZ" /locus_tag="SF3689" /note="Code: K; COG: COG1758" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit omega" /protein_id="NP_709429.1" /db_xref="GeneID:1024175" /translation="MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND KTTVIALREIEEGLINNQILDVRERQEQQELEAAELQAVTAIAEGRR" misc_feature 3792421..3792615 /gene="rpoZ" /locus_tag="SF3689" /note="DNA-directed RNA polymerase, subunit K/omega [Transcription]; Region: RpoZ; COG1758" /db_xref="CDD:441364" gene 3792715..3794823 /gene="spoT" /locus_tag="SF3690" /db_xref="GeneID:1026895" CDS 3792715..3794823 /gene="spoT" /locus_tag="SF3690" /note="Code: TK; COG: COG0317" /codon_start=1 /transl_table=11 /product="bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase" /protein_id="NP_709430.1" /db_xref="GeneID:1026895" /translation="MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEP YITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSK LDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIAR ETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILS EIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVNDSDTCYRV LGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMG VAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFT PEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLTSGQTVEIITAPG ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLNEIPQENI QRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQHGDASIPPATQSHGHLPIKGADGV LITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETAQE FITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSAFIRLTARDRVHLA NIMRKIRVMPDVIKVTRNRN" misc_feature 3792715..3794820 /gene="spoT" /locus_tag="SF3690" /note="bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Region: PRK11092" /db_xref="CDD:236843" gene 3794830..3795519 /gene="spoU" /locus_tag="SF3691" /db_xref="GeneID:1026190" CDS 3794830..3795519 /gene="spoU" /locus_tag="SF3691" /note="Code: J; COG: COG0566" /codon_start=1 /transl_table=11 /product="tRNA guanosine-2'-O-methyltransferase" /protein_id="NP_709431.1" /db_xref="GeneID:1026190" /translation="MNPTRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVG VHEVHAVWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKGQGMQILATHLSDNA VDFREIDYTRPTCILMGQEKTGITQEALALADQDIIIPMIGMVQSLNVSVASALILYE AQRQRQNAGMYLRENSMLPEAEQQRLLFEGGYPVLAKVAKRKGLPYPHVNQQGEIEAD ADWWATMQAAG" misc_feature 3794830..3795513 /gene="spoU" /locus_tag="SF3691" /note="tRNA guanosine-2'-O-methyltransferase; Provisional; Region: PRK11081" /db_xref="CDD:236837" misc_feature order(3795115..3795117,3795121..3795123,3795181..3795192, 3795199..3795201,3795241..3795246,3795250..3795252, 3795268..3795273,3795277..3795279,3795286..3795288) /gene="spoU" /locus_tag="SF3691" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:349965" gene 3795525..3797606 /gene="recG" /locus_tag="SF3692" /db_xref="GeneID:1026197" CDS 3795525..3797606 /gene="recG" /locus_tag="SF3692" /note="Code: LK; COG: COG1200" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase RecG" /protein_id="NP_709432.2" /db_xref="GeneID:1026197" /translation="MKGRLLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRY EDRTHLYPIGELLPGVYATVEGEVLNCNISFGGRRMMTCQISDGSGILTMRFFNFSAA MKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRVQGDLSTPELQETLTPVYPTTEGVKQ ATLRKLTDQALDLLDTCAIEELLPPELSQGMMTLPEALRTLHRPPPTLQLSDLETGQH PAQRRLILEELLAHNLSMLALRAGAQRFHAQPLSANDTLKNKLLAALPFKPTGAQARV VAEIEHDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHA NNFRNWFAPLGIEVGWLAGKQKGKARLSQQEAIASGQVQMIVGTHAIFQEQVQFNGLA LVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE LPPGRTPVTTVAIPDTRRTDIIDRVRHACITEGRQAYWVCTLIEESELLEAQAAEATW EELKLALPELNVGLVHGRMKPAEKQAVMASFKQGELHLLVATTVIEVGVDVPNASLMI IENPERLGLAQLHQLRGRVGRGAVASHCVLLYKTPLSKTAQIRLQVLRDSNDGFVIAQ KDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRLARHIHERYPQQAKALIER WMPETERYSNA" misc_feature 3795525..3797603 /gene="recG" /locus_tag="SF3692" /note="ATP-dependent DNA helicase RecG; Provisional; Region: PRK10917" /db_xref="CDD:236794" gene complement(3797640..3798845) /gene="gltS" /locus_tag="SF3693" /db_xref="GeneID:1026189" CDS complement(3797640..3798845) /gene="gltS" /locus_tag="SF3693" /note="Code: E; COG: COG0786" /codon_start=1 /transl_table=11 /product="glutamate transport protein" /protein_id="NP_709433.1" /db_xref="GeneID:1026189" /translation="MFHLDTLATLVAATLTLLLGRKLVHSVSFLKKYTIPEPVAGGLL VALALLVLKKSMGWEVNFDMSLRDPLMLAFFATIGLNANIASLRAGGRVVGIFLIVVV GLLVMQNAIGIGMASLLGLDPLMGLLAGSITLSGGHGTGAAWSKLFIERYGFTNATEV AMACATFGLVLGGLIGGPVARYLVKHSTTPNGIPDDQEVPTAFEKPDVGRMITSLVLI ETIALIAICLTVGKIVAQLLAGTAFELPTFVCVLFVGVILSNGLSIMGFYRVFERAVS VLGNVSLSLFLAMALMGLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYD AAVLAAGHCGFGLGATPTAIANMQAITERFGPSHMAFLVVPMVGAFFIDIVNALVIKL YLMLPIFAG" misc_feature complement(3797652..3798842) /gene="gltS" /locus_tag="SF3693" /note="sodium--glutamate symport carrier (gltS); Region: gltS; TIGR00210" /db_xref="CDD:129314" gene 3799125..3800516 /gene="yicE" /locus_tag="SF3694" /db_xref="GeneID:1026228" CDS 3799125..3800516 /gene="yicE" /locus_tag="SF3694" /note="Code: F; COG: COG2233" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709434.2" /db_xref="GeneID:1026228" /translation="MSVSTLESENAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLL AMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQG TSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVISRVLHLARRIITPL VSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLALIILLNRQRNP YLRVASLVIAMAAGYALAWFMGMLPESNEPMTQELIMVPTPLYYGLGIEWSLLLPLML VFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCF GQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIA ASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPLILQFAPEWLKNLLSSGIAAGGIT AIVLNLIFPPEKQ" misc_feature 3799209..3800495 /gene="yicE" /locus_tag="SF3694" /note="uracil-xanthine permease; Region: ncs2; TIGR00801" /db_xref="CDD:273276" gene 3800637..3802346 /gene="yicH" /locus_tag="SF3695" /db_xref="GeneID:1026183" CDS 3800637..3802346 /gene="yicH" /locus_tag="SF3695" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709435.2" /db_xref="GeneID:1026183" /translation="MKFIGKLLLYILIALLVVIAGLYFLLQTRWGAEHISAWVSENSD YHLAFGAMDHRFSAPSHIVLENVTFGRDGQPAPLVAKSVDIALSSRQLTEPRHVDTIL LENGTLNLTDQTAPLPFKADRLQLRDMAFNSPNSEWKLSAQRVNGGVVPWSPEAGKVL GTKAQIQFSAGSLSLNDVPATNVLIEGSIDNDRVTLTNLGADIARGTLTGNAQRNADG SWQVENLRMADIRLQSEKSLTDFFAPLRSVPSLQIGRLEVIDARLQGPDWAVTDLDLS LRNMTFSKDDWQTQEGKLSMNASEFIYGSLHLFDPIINAEFSPQGVALRQFTSRWEGG MVRTSGNWLRDGKTLILDDAAIAGLEYTLPKNWQQLWMETTPGWLNSLQLKRFSASRN LIIDIDPDFPWQLTALDGYGANLTLVTDHKWGVWSGSANLNAAAATFNRVDVRRPSLA LTANSSTVNISELSAFTEKGILEATASVSQTPQRQTHISLNGRGVPVNILQQWGWPEL PLTGDGNIQLTASGDIQANAPLKPTVSGQLHAVNAAKQQVTQTMNAGVVSSGEVTSTE PVR" misc_feature 3800685..3802250 /gene="yicH" /locus_tag="SF3695" /note="AsmA family; Region: AsmA; pfam05170" /db_xref="CDD:428346" gene complement(3802399..3804717) /gene="yicI" /locus_tag="SF3696" /db_xref="GeneID:1026212" CDS complement(3802399..3804717) /gene="yicI" /locus_tag="SF3696" /note="Code: G; COG: COG1501" /codon_start=1 /transl_table=11 /product="alpha-glucosidase" /protein_id="NP_709436.1" /db_xref="GeneID:1026212" /translation="MKISDGNWLIQPGLNLIHPLQVFEVEQQDNEMVVYAAPRDVRER TWQLDTPLFTLRFFSPQEGIVGVRIEHFQGALNNGPHYPLNILQDVKVTIENTERYAE FKSGNLSARVSKGEFWSLDFLRNGERITGSQVKNNGYVQDTNNQRNYMFERLDLGVGE TVYGLGERFTALVRNGQTVETWNRDGGTSTEQAYKNIPFYMTNRGYGVLVNHPQCVSF EVGSEKVSKVQFSVESEYLEYFVIDGPTPKAVLDRYTRFTGRPALPPPWSFGLWLTTS FTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPEGMIRR LKAKGLKICVWINPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNP DACKWYADKLKGLVAMGVDCFKTDFGERIPIDVQWFDGSDSQKMHNHYAYIYNELVWN VLKDTVGEEEAVLFARSASVGAQKFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFW SHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTQLK CRMMPYLYREAARANARGTPMMRAMMMEFPDDPACDYLDRQYMLGDNVMVAPVFTEAG DVQFYLPEGRWTHLWHNDELDGSRWHKQQHGFLSLPVYVRDNTLLALGNNDQRPDYVW HEGTAFHLFNLQDGHEAVCEVPAADGSVIFTLKAARTGNTITVTGAGEAKNWTLCLRN VVKVNGLQGGSQAESEQGLVVTPQGNALTITL" misc_feature complement(3802720..3804717) /gene="yicI" /locus_tag="SF3696" /note="putative alpha-glucosidase; Provisional; Region: PRK10658" /db_xref="CDD:236731" gene complement(3804727..3806167) /gene="yicJ" /locus_tag="SF3697" /pseudo /db_xref="GeneID:1026201" misc_feature complement(3804727..3806167) /gene="yicJ" /locus_tag="SF3697" /note="Similar to Escherichia coli K12 permease gi: 2367257 (480 aa). BLAST with identity of 99% in 480 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 3806403..3806493 /locus_tag="SF4518" /db_xref="GeneID:3161790" tRNA 3806403..3806493 /locus_tag="SF4518" /product="tRNA-Sec" /codon_recognized="UGA" /db_xref="GeneID:3161790" misc_feature 3806605..3836345 /note="SHI-2" gene 3806769..3807980 /locus_tag="SF3698" /db_xref="GeneID:1026199" CDS 3806769..3807980 /locus_tag="SF3698" /note="Code: L; COG: COG0582" /codon_start=1 /transl_table=11 /product="integrase" /protein_id="NP_709437.1" /db_xref="GeneID:1026199" /translation="MNSSKAGGCHGINDIKVKTAKPKDKPYKLADGGGMYLLINTNGS KYWRMKYRFAGKEKMLSIGVYPDVTLADAREKRSEARKLLAAGGDPGEAKKEEKIAQQ MSLKNTFEAIAREWHQLKADRWSLRYRDEIIDTFEKDIFPYIGKRPIAEIKPMKLLEA LRKMEKRGALEKMRKVRQRCGEVFRYAIVTGRADYNPAPDLASALATPKKVHFPFLTA NELPHFLNDLAGYTGSIITKTATQIIMLTGVRTQELRFARWEDIDFETKLWEIPAEVM KMKRPHIVPLSEQVIMLFKQLEPISKHHPLVFIGRNDPRKPISKESINQVIELLGYKG RLTGHGFRHTMSTILHEQGFNSAWIEMQLAHVDKNSIRGTYNHALYLDGRREMMQWYA DYIDSLSSRES" misc_feature 3806808..3807974 /locus_tag="SF3698" /note="Integrase/recombinase, includes phage integrase [Replication, recombination and repair, Mobilome: prophages, transposons]; Region: FimB; COG0582" /db_xref="CDD:440347" gene 3808392..3809435 /gene="shiA" /locus_tag="SF3699" /db_xref="GeneID:1026180" CDS 3808392..3809435 /gene="shiA" /locus_tag="SF3699" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709438.1" /db_xref="GeneID:1026180" /translation="MNDRLCFEVHDNKGYFVFPDTWFGPLLGEFEEVLDAYDADEISE TSYINKLRRLAQREPDFIDIHAHLAYAFLEQNAPRKALNAALKGLAAGNRIIPESFCG EIIWMHPENRPYLRALYAAILANVHLQRHQDAVMLTDKILAYNPEDNQGARWLLGSEL LRTGDHERAFSVLKEHADEFSPYWYELGLLHFLNGEHVKAATAFRHGFATNTYIAEML CGNLHPFPLAVWHDFSGSLDTAEDYYATYSPLWGQYPEALLFVNWLYNHSSVLHERSE IIKCAEMLIQEDDFEICESILRQQEHLWKRIDKTLSEEIVQKCRNMNGEYIWPWILPF SAAGMKHSSIQYQ" misc_feature 3808533..3808916 /gene="shiA" /locus_tag="SF3699" /note="Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Region: NrfG; COG4235" /db_xref="CDD:443378" misc_feature 3808557..3809318 /gene="shiA" /locus_tag="SF3699" /note="Tetratricopeptide (TPR) repeat [General function prediction only]; Region: TPR; COG0457" /db_xref="CDD:440225" misc_feature order(3808737..3808739,3808746..3808751,3808758..3808763, 3808767..3808769,3808839..3808841,3808851..3808856, 3808863..3808868,3808872..3808877,3808935..3808937, 3808944..3808949,3808956..3808961,3808968..3808970) /gene="shiA" /locus_tag="SF3699" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 3808737..3808820 /gene="shiA" /locus_tag="SF3699" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 3808833..3808919 /gene="shiA" /locus_tag="SF3699" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 3808932..3809009 /gene="shiA" /locus_tag="SF3699" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene 3809950..3810411 /gene="shiB" /locus_tag="SF3700" /db_xref="GeneID:1026192" CDS 3809950..3810411 /gene="shiB" /locus_tag="SF3700" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709439.1" /db_xref="GeneID:1026192" /translation="MDENALRFASYWRNSLADAESGKGCFERKDAQNFTHWHGIAAGR LDEAIVNKFFKGEKDDVETVNVILRPKVYFRLLQHGKDRSAGTPDIVTPIVTPALLSR EGFLYPTPATSIPRDLLEPLPKGAFSIGEIGQYDKYKTTHTDPTHVMWTRP" mobile_element complement(3810378..3811014) /note="partial" /mobile_element_type="insertion sequence:IS3" gene complement(3810408..3811263) /locus_tag="SF3701" /pseudogene="unknown" /db_xref="GeneID:1026195" mobile_element complement(3811174..3811304) /note="partial" /mobile_element_type="insertion sequence:IS3" gene complement(3811260..3811559) /locus_tag="SF3703" /db_xref="GeneID:1026154" CDS complement(3811260..3811559) /locus_tag="SF3703" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709442.1" /db_xref="GeneID:1026154" /translation="MTKPVSISKKPRKQHTPEFRNEALKLAERIGVAAAARELSLYES QLYAWRSKQQQQMSSSERESELAAENVRLKRQLAEQAEELSILQKAATYFAKRLK" misc_feature complement(3811278..3811535) /locus_tag="SF3703" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" mobile_element complement(3811399..3811622) /note="partial" /mobile_element_type="insertion sequence:IS3" mobile_element complement(3812301..3813606) /mobile_element_type="insertion sequence:IS629" gene complement(3812343..3813226) /locus_tag="SF3705" /pseudogene="unknown" /db_xref="GeneID:1026167" gene complement(3813226..3813552) /locus_tag="SF3706" /db_xref="GeneID:1026205" CDS complement(3813226..3813552) /locus_tag="SF3706" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS629 protein" /protein_id="NP_709445.1" /db_xref="GeneID:1026205" /translation="MTKNTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTP ETLRVWVRQHERDTGGGDGGLTTAERQRLKEPERENRELRRSNDILRQASAYFAKAEF DRLWKK" misc_feature complement(3813262..3813549) /locus_tag="SF3706" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene complement(3814222..3814494) /locus_tag="SF3707" /db_xref="GeneID:1026211" CDS complement(3814222..3814494) /locus_tag="SF3707" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709446.1" /db_xref="GeneID:1026211" /translation="MSYQPGGLVLPDLSRRGYLSKNASSSNRFGLVNGDGLSKDSRCW CTFSRWRSSMDNAIACSSSLVIVCTGKAIYRSTSHYGKNVLLLQLA" mobile_element complement(3814544..3815874) /mobile_element_type="insertion sequence:IS2" gene complement(3814555..3815460) /locus_tag="SF3708" /db_xref="GeneID:1026185" CDS complement(3814555..3815460) /locus_tag="SF3708" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_709447.1" /db_xref="GeneID:1026185" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(3814558..3815460) /locus_tag="SF3708" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(3815418..3815828) /locus_tag="SF3709" /db_xref="GeneID:1026165" CDS complement(3815418..3815828) /locus_tag="SF3709" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_709448.3" /db_xref="GeneID:1026165" /translation="MIVLILVFRLVIGVQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMKNELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(3815421..3815783) /locus_tag="SF3709" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 3816150..3816344 /locus_tag="SF3710" /db_xref="GeneID:1026163" CDS 3816150..3816344 /locus_tag="SF3710" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709449.1" /db_xref="GeneID:1026163" /translation="MNENKIKRLEQLLQARQREFATKWGRAALPHERLTYFPLEDLIK NNGKKIRSDKKHFLECNEDK" mobile_element complement(3818006..3818773) /mobile_element_type="insertion sequence:IS1" gene complement(3818021..3818524) /gene="insB" /locus_tag="SF3712" /db_xref="GeneID:1026204" CDS complement(3818021..3818524) /gene="insB" /locus_tag="SF3712" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709451.1" /db_xref="GeneID:1026204" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLRVFLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature complement(3818024..3818416) /gene="insB" /locus_tag="SF3712" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3818599..3819570 /gene="shiE" /locus_tag="SF3713" /db_xref="GeneID:1026152" CDS 3818599..3819570 /gene="shiE" /locus_tag="SF3713" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709452.1" /db_xref="GeneID:1026152" /translation="MPCFTAMRAEIAQMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL KSPSYTKSVSWQHYPWSETKAAYRCFSNDKVSANKIMTPHKENITERAQQFKRVLVLQ DTTELNYSGQKEKQGVGPKKHKDERNLFLHPQLVISESGVCLGVYDDYQWFRDELKTS KNTRQEICNDLLHKKHVSEKETWRWVEGYNKATELARQCPDTHVLSISDREGDFYDLF ERAAQTPGIKADWLVRMKFNNRATLNINGKRDHRLLHERIMEITPQQLVEFTIPDGRG QQARTLPDMLSSDAGPLSYPLIYSSKVMIISLFDSTVMPDKYRHNGK" misc_feature 3818791..>3819441 /gene="shiE" /locus_tag="SF3713" /note="IS4 family transposase; Region: transpos_IS4_3; NF033590" /db_xref="CDD:468099" gene complement(3819520..3820713) /gene="imm" /locus_tag="SF3714" /db_xref="GeneID:1026172" CDS complement(3819520..3820713) /gene="imm" /locus_tag="SF3714" /codon_start=1 /transl_table=11 /product="membrane transport protein" /protein_id="NP_709453.1" /db_xref="GeneID:1026172" /translation="MSPGIEDTPQKPLSCWPLAFSAGLLGIGQNGLLVVLPVLVIQTN LSLSVWAALLMLGSMLFLPSSPWWGKQISRTGSKPVVLWALGGYGISFTLLGLGSVLM ATSAITTAVGLGILIIARIAYGLTVSAMVPACQVWALQRAGEGNRMAALATISSGLSC GRLFGPLCAAAMLAIHPLAPLGLLMAAPVLALLMLLRLPGTPPQPTPECKSVSLKRDC LPYLLCAILLAAAVSMMQLGLSPALTRQFATDTTAISQQVAWLLGLSAVAALIAQFGV LRPQRLTPVALLLSAGVLMSGGLAIMLSEQLWLFYPGCAVLSFGAALATPAYQLLLND KLADGAGAGWLATSHTLGYGLCALLVPLVSKTGVAIALIMAALFATILFTIVSVFIWH YRTIK" misc_feature complement(3819550..3820584) /gene="imm" /locus_tag="SF3714" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature complement(order(3819655..3819657,3819664..3819669, 3819676..3819681,3819688..3819690,3819727..3819729, 3819739..3819741,3819751..3819756,3819895..3819897, 3819907..3819909,3819991..3819993,3820000..3820008, 3820015..3820020,3820027..3820029,3820228..3820230, 3820237..3820242,3820249..3820251,3820309..3820311, 3820318..3820326,3820330..3820335,3820519..3820521)) /gene="imm" /locus_tag="SF3714" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:349949" gene 3820792..3822573 /gene="iucA" /locus_tag="SF3715" /db_xref="GeneID:1026161" CDS 3820792..3822573 /gene="iucA" /locus_tag="SF3715" /codon_start=1 /transl_table=11 /product="siderophore biosynthesis protein" /protein_id="NP_709454.2" /db_xref="GeneID:1026161" /translation="MRIIIDIIVIILLCGSCLTMTLPSEKPATDVAAQCFLNALIRET TDWKLTEYPPDELLIPLDEQKSLHFRVAYFSPTQHHRFAFPARLVTASGSYPVDFTTL SRLIIDKLRHQLFLPVPLCETFHQRVLESHVHTQQAIDARHDWAALREKALNFGEAEQ ALLTGHAFHPAPKSHEPFNRREAERYLPDMAPHFPLRWFSVDKTQIAGESLHLNLQQR LTRFAAENAPQLLNELSDNQWLFPLHPWQGEYLLQQGWCQALVAKGLIKDLGEAGTSW LPTTSSRSLYCATSRDMIKFSLSVRLTNSIRTLSVKEVKRGMRLARLAQTDGWQMLQV RFPTFRVMQEDGWAGLLDLNGNIMQESLFALRENLLVDQPKSQTNVLVSLTQAAPDGG DSLLVSAVKRLSDRLGITVQQAAHAWVDAYCQQVLKPLFTAEADYGLVLLAHQQNILV QMLGDLPVGFIYRDCQGSAFMPHATDWLDSIGEAQAENIFTHEQLLRYFPYYLLVNST FAVTAALGAAGLDSESNLMARVRASLAEVRDQVTHKTCLNYVLESPYWNVKGNFFCYL NDHNENTIVDPSVIYFDFANPLQAQEV" misc_feature 3820873..3822561 /gene="iucA" /locus_tag="SF3715" /note="Siderophore synthetase component IucA/IucC/SbnC [Inorganic ion transport and metabolism]; Region: IucA; COG4264" /db_xref="CDD:443406" gene 3822574..3823521 /gene="iucB" /locus_tag="SF3716" /db_xref="GeneID:1026896" CDS 3822574..3823521 /gene="iucB" /locus_tag="SF3716" /codon_start=1 /transl_table=11 /product="siderophore biosynthesis protein" /protein_id="NP_709455.1" /db_xref="GeneID:1026896" /translation="MSEANIIHSRYGLRCEKLDKPLNLGWGLDNSAVLHCPGELPTGW LCDALDQIFIAAPQLSAVALPWAEWREEPQALTLFGQVKSDIIHRTAFWQLPLWLSSP ANRASGEMVFDAEREIYFPQRPPRPQGEVYRRYDPRIRRMLSFRIADPVSDAERFTRW MNDPRVEYFWEQSGSLEVQTAYLERQLTGKHAFPLIGCFDDRPFSYFEIYWAAEDRIG RHYSWQPFDRGLHLLVGEQQWRGAHYVQSWLRGLTHYLLLDEPRTQRTVLEPRTDNQR LFRHLEPAGYRTIKEFDFPHKRSRMVMADRHHFFTEVGL" misc_feature 3823018..3823455 /gene="iucB" /locus_tag="SF3716" /note="Acetyltransferase (GNAT) domain; Region: Acetyltransf_8; pfam13523" /db_xref="CDD:433280" gene 3823521..3825263 /gene="iucC" /locus_tag="SF3717" /db_xref="GeneID:1026151" CDS 3823521..3825263 /gene="iucC" /locus_tag="SF3717" /codon_start=1 /transl_table=11 /product="siderophore biosynthesis protein" /protein_id="NP_709456.1" /db_xref="GeneID:1026151" /translation="MNHKDWDFVNRRLVAKMLSEMEYEQVFHAESQGDDHYCINLPGA QWRFIAERGIWGWLWIDAQTLRCTDEPVLAQTLLMQLKPVLSMSDATVAEHMQDLYAT LLGDLQLLKARRGLSASDLINLDADRLQCLLSGHPKFVFNKGRRGWGKEALERYAPEY TNTFRLHWLAVKREHMIWRCDNDLDIQQLLTAAMDPQEFTRFSQVWQENGLDHNWLPL PVHPWQWQQKIATDFIADFAEGRMVSLGEFGDQWLAQQSLRTLTNASRRGGLDIKLPL TIYNTSCYRGIPGRYIAAGPLASRWLQQVFATDATLVQSGAVILGEPAAGYVSHEGYA ALARAPYRYQEMLGVIWRENPCRWLKPDESPVLMATLMECDENNQPLAGAYIDRSGLD AETWLTQLFRVVVVPLYHLLCRYGVALIAHGQNITLAMKEGVPQRVLLKDFQGDMRLV KEAFPEMDSLPQEVRDVTSRLSADYLIHDLQTGHFVTVLRFISPLMVRLGVPERRFYQ LLAAVLSDYMNKHPQMAERFALFSLFRPQIIRVVLNPVKLTWPDLDGGSRMLPNYLEN LQNPLWLVTQEYES" misc_feature 3823536..3825233 /gene="iucC" /locus_tag="SF3717" /note="Siderophore synthetase component IucA/IucC/SbnC [Inorganic ion transport and metabolism]; Region: IucA; COG4264" /db_xref="CDD:443406" gene 3825260..3826597 /gene="iucD" /locus_tag="SF3718" /db_xref="GeneID:1026141" CDS 3825260..3826597 /gene="iucD" /locus_tag="SF3718" /note="Code: Q; COG: COG3486" /codon_start=1 /transl_table=11 /product="lysine:N6-hydroxylase" /protein_id="NP_709457.1" /db_xref="GeneID:1026141" /translation="MKKSVDFIGVGTGPFNLSIAALSHQIEELNCLFFDEHPHFSWHP GMLVPDCHMQTVFLKDLVSAVAPTNPYSFVNYLVKHKKFYRFLTSRLRTVSREEFSDY LRWAAEDMNNLYFSHTVENIDFDKKSRLFLVQTSRGEYFAHNICLGTGKQPYLPPCVK HVTQSCFHASEMNLRRPDLSGKRITVVGGGQSGADLFLNALRGEWGEAAEINWVSRRN NFNALDEAAFADEYFTPEYISGFSGLKEDIRHQLLDEQKMTSDGITADSLLTIYRELY HRFEVLRKPRNIRLLPSRSVTTLESSGPGWRLLMEHHLDQGRESLESDVVIFATGYRS ALPQILPSLMPLITMHDKNTFKVRDDFTLEWSGPKENNIFAVNASMQTHGIAEPQLSL MAWRSARILNRVLGRDLFDLSMPPALIQWRSGSRKKPQPEAASLTHYTANIQE" misc_feature 3825266..3826552 /gene="iucD" /locus_tag="SF3718" /note="Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]; Region: IucD; COG3486" /db_xref="CDD:442709" gene 3826603..3828798 /gene="iutA" /locus_tag="SF3719" /db_xref="GeneID:1026206" CDS 3826603..3828798 /gene="iutA" /locus_tag="SF3719" /note="Code: P; COG: COG1629" /codon_start=1 /transl_table=11 /product="ferric siderophore receptor" /protein_id="NP_709458.2" /db_xref="GeneID:1026206" /translation="MRKKYMPRALGPLLLVVLSPAVAQQNDDNEIIVSASRSNRTVAE MAQTTWVIENAELEQQIQGGKELKDALAQLIPGLDVSSQSRTNYGMNMRGRPLVVLID GVRLNSSRSDSRQLDSVDPFNIDHIEVISGATALYGGGSTGGLINIVTKKGQPETMME FEAGTKSGFNSSKDHDERIAGAVSGGNDHISGRLSVAYQKFGGWFDGNGDATLLDNTQ TGLQHSNRLDIMGTGTLNIDESRQLQLITQYYKSQGDDNYGLNLGKGFSAISGSSTPY VSKGLNSDRIPGTERHLISLQYSDSDFLGQELVGQVYYRDESLRYYPFPTVNANKQAT AFSSSQQDTDQYGMKLTLNSQLMDGWQITWGLDAEHERFTSNQMFFDLAQASASGGLN NHKIYTTGRYPSYDITNLAAFLQSSYDINDIFTVSGGVRYQYTENRVDDFIDYTQQQK IATGKAISADAIPGGSVDYDNFLFNAGLLMHITERQQAWFNFSQGVALPDPGKYYGRG IYGAAVNGHLPLTKSVNVSDSKLEGVKVDSYELGWRFIGDNLRTQIAAYYSLSNKSVE RNKDLTISVKDDRRRIYGVEGAVDYLIPDTDWSTGVNFNVLKTESKVNGQWQKYDVKE SSPSKATAYINWAPEPWSLRVQSTTSFDVSDAEGNDINGYTTVDFISSWQLPVGTLSF SVENLFDRDYTTVWGQRAPLYYSPGYGPASLYDYKGRGRTFGLNYSVLF" misc_feature 3826732..3828795 /gene="iutA" /locus_tag="SF3719" /note="TonB-dependent siderophore receptor; Region: TonB-siderophor; TIGR01783" /db_xref="CDD:273805" misc_feature order(3826744..3826773,3826807..3826821,3826825..3826839, 3826870..3826887,3826897..3826920,3826963..3826995, 3827026..3827052) /gene="iutA" /locus_tag="SF3719" /note="N-terminal plug [active]" /db_xref="CDD:238657" misc_feature order(3827557..3827559,3827623..3827625) /gene="iutA" /locus_tag="SF3719" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:238657" gene 3829719..3830477 /locus_tag="SF3720" /db_xref="GeneID:1026219" CDS 3829719..3830477 /locus_tag="SF3720" /codon_start=1 /transl_table=11 /product="serine protease-like protein" /protein_id="NP_709459.1" /db_xref="GeneID:1026219" /translation="MREYMNKIYSLKYSAATGGLIAVSELAKRVSGKTNRKLVATMLS LAVAGTVNAANIDISNVWARDYLDLAQNKGIFQPGATDVTITLKNGDKFSFHNLSIPD FSGAAASGAATAIGGSYSVTVAHNKKNPQAAETQVYAQSSYKVVDRRNSNDFEIQRLN KFVVETVGATPAETNPTTYSDALERYGIVTSDGSKKIIGFRAGSGGTSFINGESKIST NSAYSHDLLSASLFEVTQWDSLDLPLYFQTSVIT" misc_feature 3829731..3829871 /locus_tag="SF3720" /note="Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018" /db_xref="CDD:463773" misc_feature 3829914..>3830276 /locus_tag="SF3720" /note="Immunoglobulin A1 protease; Region: Peptidase_S6; pfam02395" /db_xref="CDD:396804" mobile_element complement(3830437..3831767) /mobile_element_type="insertion sequence:IS2" gene complement(3830448..3831353) /locus_tag="SF3721" /db_xref="GeneID:1025499" CDS complement(3830448..3831353) /locus_tag="SF3721" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_709460.1" /db_xref="GeneID:1025499" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(3830451..3831353) /locus_tag="SF3721" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(3831311..3831721) /locus_tag="SF3722" /db_xref="GeneID:1026164" CDS complement(3831311..3831721) /locus_tag="SF3722" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_709461.3" /db_xref="GeneID:1026164" /translation="MIVLILVFRLVIGVQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMKNELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(3831314..3831676) /locus_tag="SF3722" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 3831822..3834344 /gene="lpfC" /locus_tag="SF3723" /db_xref="GeneID:1026169" CDS 3831822..3834344 /gene="lpfC" /locus_tag="SF3723" /note="Code: N; COG: COG3188" /codon_start=1 /transl_table=11 /product="long polar fimbriae" /protein_id="NP_709462.1" /db_xref="GeneID:1026169" /translation="MMTTRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDI RQFNRANLMPPGVYSVDIFINGKMFERQDVTFVQDNPDADLHACFIAIKKTLSSFGIK VDALKSFNDVDETVCLDPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRW DEGINALTINYDFSGSHTLRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGR AEYNSISTWIQRDIAALRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFA PVVRGIAKSNATVIIRQNGYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQ RFTQPYASLAILKREGLTDVDVSVGELRDEDGFTPDVLQAQILHGFSHGITLYGGMQA AENYGSAALGVGKDLGALGAISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSL RLVGYRYSTEGYYTLNEWASRRNSPEDFWETGNRRSRVEGTLTQSLGRDYGNLYLTLS RQQYWHTDDVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLS LSVPLSGWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVG GNMSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAP GAAGLEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPT RGAVVKAEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSG LPEKGQVTLSWGENASTKCIFNYSFSTPESESGLIEQGVTCH" misc_feature 3831828..3834341 /gene="lpfC" /locus_tag="SF3723" /note="Outer membrane usher protein FimD/PapC [Cell motility, Extracellular structures]; Region: FimD; COG3188" /db_xref="CDD:442421" mobile_element complement(3834487..3835254) /mobile_element_type="insertion sequence:IS1" gene complement(3834502..3834897) /gene="insB" /locus_tag="SF3724" /db_xref="GeneID:1026156" CDS complement(3834502..3834897) /gene="insB" /locus_tag="SF3724" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709463.1" /db_xref="GeneID:1026156" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(3834505..3834894) /gene="insB" /locus_tag="SF3724" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3834924..3835199) /gene="insA" /locus_tag="SF3725" /db_xref="GeneID:1026157" CDS complement(3834924..3835199) /gene="insA" /locus_tag="SF3725" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709464.1" /db_xref="GeneID:1026157" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTVSQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<3834927..3835178) /gene="insA" /locus_tag="SF3725" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3835510..3836205 /locus_tag="SF3726" /db_xref="GeneID:1026166" CDS 3835510..3836205 /locus_tag="SF3726" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_709465.1" /db_xref="GeneID:1026166" /translation="MNAPFEYHANNPSGNTKYNCNRIEPLSISSGAKAIVYFYIKKTF AGKLIIPETKIVTLYGTISRDTPVDYSQPMADVYIRGDITAPQSCEINNLKPVCFDFK EIPAADFSSVVGSAVTTHKITKTVTIECENLGILNTDDISTSFYATEPNTDNSMVVTS NSNVGIKIYDKNNKEIKVNGGELPTDMDKSTVYGEKSGSVTFSAAPASLTGARPAPGQ FTATATITVEIVR" misc_feature <3835519..3836196 /locus_tag="SF3726" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" gene 3836453..3837493 /gene="pstS" /locus_tag="SF3727" /db_xref="GeneID:1026179" CDS 3836453..3837493 /gene="pstS" /locus_tag="SF3727" /note="Code: P; COG: COG0226" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter substrate-binding protein" /protein_id="NP_709466.1" /db_xref="GeneID:1026179" /translation="MKVMRTTVATVVAATLSMSAFSVFAEASLTGAGATFPAPVYAKW ADTYQKETGNKVNYQGIGSSGGVKQIIANTVDFGASDAPLSDEKLAQEGLFQFPTVIG GVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAIAKLNPGLKLPSQNIAVVRR ADGSGTSFVFTSYLAKVNEEWKNNVGTGSTVKWPIGLGGKGNDGIAAFVQRLPGAIGY VEYAYAKQNNLAYTKLISADGKPVSPTEENFANAAKGADWSKTFAQDLTNQKGEDAWP ITSTTFILIHKDQKKPEQGTEVLKFFDWAYKTGAKQANDLDYASLPDSVVEQVRAAWK TNIKDSSGKPLY" misc_feature 3836453..3837490 /gene="pstS" /locus_tag="SF3727" /note="phosphate ABC transporter substrate-binding protein PstS; Region: PRK10918" /db_xref="CDD:182837" misc_feature order(3836552..3836554,3836693..3836695,3836930..3836932, 3836942..3836953,3837056..3837058) /gene="pstS" /locus_tag="SF3727" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270227" gene 3837640..3838539 /gene="pstC" /locus_tag="SF3728" /db_xref="GeneID:1026124" CDS 3837640..3838539 /gene="pstC" /locus_tag="SF3728" /note="Code: P; COG: COG0573" /codon_start=1 /transl_table=11 /product="high-affinity phosphate ABC transporter permease" /protein_id="NP_709467.3" /db_xref="GeneID:1026124" /translation="MLVKLAALIVLLMLGGIIVSLIISSWPSIQKFGLAFLWTKEWDA PNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTELAPGWLKRPLGIAIELLAAI PSIVYGMWGLFIFAPLFAVYFQEPVGNIMSNIPIVGALFSGPAFGIGILAAGVILAIM IIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRIVLPFTKNGVIGGIMLGLGRA LGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFAEAESGLHVAALMELGLILFV ITFIVLAASKFMIMRLAKNEGAR" misc_feature 3837643..3838536 /gene="pstC" /locus_tag="SF3728" /note="phosphate ABC transporter permease PstC; Region: pstC; PRK11275" /db_xref="CDD:183070" misc_feature order(3837850..3837855,3837862..3837867,3837880..3837882, 3837913..3837924,3837928..3837957,3837964..3837969, 3837973..3837975,3838114..3838119,3838123..3838125, 3838129..3838131,3838138..3838143,3838147..3838149, 3838159..3838164,3838171..3838173,3838222..3838224, 3838264..3838269,3838276..3838278,3838297..3838308, 3838315..3838320,3838357..3838362,3838390..3838395) /gene="pstC" /locus_tag="SF3728" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(3837931..3837975,3838297..3838314) /gene="pstC" /locus_tag="SF3728" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(3837973..3837975,3838099..3838101,3838315..3838317, 3838351..3838353,3838360..3838362,3838390..3838392) /gene="pstC" /locus_tag="SF3728" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(3838174..3838212,3838228..3838233,3838243..3838245) /gene="pstC" /locus_tag="SF3728" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 3838539..3839429 /gene="pstA" /locus_tag="SF3729" /db_xref="GeneID:1026186" CDS 3838539..3839429 /gene="pstA" /locus_tag="SF3729" /note="Code: P; COG: COG0581" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter permease subunit PtsA" /protein_id="NP_709468.1" /db_xref="GeneID:1026186" /translation="MAMVEMQTTAALAESRRKMQARRRLKNRIALTLSMATMAFGLFW LIWILMSTITRGIDGMSLALFTEMTPPPNTEGGGLANALAGSGLLILWATVFGTPLGI MAGIYLAEYGRKSWLAEVIRFINDILLSAPSIVVGLFVYTIVVAQMEHFSGWAGVIAL ALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASVSGIMTGILLAI ARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIIT LCVLLLNILARVVFAKNKHG" misc_feature 3838539..3839423 /gene="pstA" /locus_tag="SF3729" /note="phosphate ABC transporter permease PstA; Region: pstA; PRK11268" /db_xref="CDD:183065" gene 3839521..3840294 /gene="pstB" /locus_tag="SF3730" /db_xref="GeneID:1026897" CDS 3839521..3840294 /gene="pstB" /locus_tag="SF3730" /note="Code: P; COG: COG1117" /codon_start=1 /transl_table=11 /product="phosphate ABC transporter ATP-binding protein PstB" /protein_id="NP_709469.1" /db_xref="GeneID:1026897" /translation="MSMVETAPSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGP SGCGKSTLLRTFNKMFELYPEQRAEGEILLDGDNILTNSQDIALLRAKVGMVFQKPTP FPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQ RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC SDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYITGRYG" misc_feature 3839521..3840291 /gene="pstB" /locus_tag="SF3730" /note="ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: PstB; COG1117" /db_xref="CDD:440734" gene 3840309..3841034 /gene="phoU" /locus_tag="SF3731" /db_xref="GeneID:1026175" CDS 3840309..3841034 /gene="phoU" /locus_tag="SF3731" /note="Code: P; COG: COG0704" /codon_start=1 /transl_table=11 /product="transcriptional regulator PhoU" /protein_id="NP_709470.2" /db_xref="GeneID:1026175" /translation="MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMH NQDSDLAKRVIEGDKNVNMMEVAIDEACVRIIAKRQPTASDLRLVMVISKTIAELERI GDVADKICRTALEKFSQQHQPLLVSLESLGRHTIQMLHDVLDAFARMDIDEAVRIYRE DKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEFIFYYVK GQDFRHVGGDELDKLLAGKDSDK" misc_feature 3840309..3841016 /gene="phoU" /locus_tag="SF3731" /note="phosphate signaling complex protein PhoU; Region: PRK11115" /db_xref="CDD:182974" gene 3841321..3842142 /gene="bglG" /locus_tag="SF3732" /db_xref="GeneID:1026171" CDS 3841321..3842142 /gene="bglG" /locus_tag="SF3732" /codon_start=1 /transl_table=11 /product="transcriptional antiterminator BglG" /protein_id="NP_709471.1" /db_xref="GeneID:1026171" /translation="MNMQITKILNNNVVVVIDDQQREKVVMGRGIGFQKRAGERINSS GIEKEYALSSHELNGRLSELLSHIPLEVMATCDRLISLAQERLGKLQDSIYISLTDHC QFAIKRFQQNVLLWDIQRLYPKEFQLGEEALTIIDKRLGVQLPKDEVGFIAMHLVSAQ MSGNMEDVAGVTQLMREMLQLIKFQFSLNYQEESLSYQRLVTHLKFLSWRILEHASIN DSDESLQQAVKQNYPQAWQCAERIAIFIGLQYQRKISPAEIMFLAINIERVRKEH" misc_feature 3841321..3842139 /gene="bglG" /locus_tag="SF3732" /note="transcriptional antiterminator BglG; Provisional; Region: PRK09772" /db_xref="CDD:170086" gene 3842276..3844153 /gene="bglF" /locus_tag="SF3733" /db_xref="GeneID:1026133" CDS 3842276..3844153 /gene="bglF" /locus_tag="SF3733" /codon_start=1 /transl_table=11 /product="PTS system beta-glucoside-specific transporter subunits IIABC" /protein_id="NP_709472.2" /db_xref="GeneID:1026133" /translation="MTELARKIVAGVGGADNIVSLMHCATRLRFKLKDESKAQAEVLK KTPGIIMVVESGGQFQVVIGNHVADVFLAVNSVAGLGEKAQQAPENDEKGNLLNRFVY VISGIFTPLIGLMAATGILKGMLALALTFQWTTEQSGTYLILFSASDALFGFFPIILG YTAGKRFGGNPFTAMVIGGALVHPLILTAFENGQKADAPGLDFLGIPVTLLNYSSSVI PIIFSAWLCSILERRLNAWLPSAIKNFFTPLLCLMVITPVTFLLVGQLSTWISEMIAA GYLWLYQAVPAFAGAVMGGFWQIFVMFGLHRGLVPLCINNFTVLGYDTMIPLLMPAIM AQVGAALGVFLCERDAQKKVVAGSAALTGLFGITEPAVYGVNLPRKYPFVIACISGAL GATIIGYAQTKVYSFGLPSIFTFMQTIPSTGIDFTVWASVIGGVIAIGCAFVGTLMLH FITSKRQPAQGAPQEKTPEVITPPEQGGICSPMTGEIVPLIHVADTTFASGLLGKGIA ILPSVGEVRSPVAGRIASLFATLHAIGIESDDGVEILIHVGIDTVKLDGKFFSAHVNV GDKVNTGDRLISFDIPAIREAGFDLTTPVLISNSDDFTDVLPHGTAQISAGEPLLSII R" misc_feature 3842276..3844150 /gene="bglF" /locus_tag="SF3733" /note="PTS system beta-glucoside-specific transporter subunits IIABC; Provisional; Region: PRK09824" /db_xref="CDD:236627" misc_feature 3844172..3846359 /note="Similar to Escherichia coli K12 phospho-beta-glucosidase B; cryptic gi: 2367270 (471 aa). BLAST with identity of 98% in 729 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element 3845200..3845967 /mobile_element_type="insertion sequence:IS1" gene 3845255..3845530 /gene="insA" /locus_tag="SF3735" /db_xref="GeneID:1026120" CDS 3845255..3845530 /gene="insA" /locus_tag="SF3735" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709473.1" /db_xref="GeneID:1026120" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 3845276..>3845527 /gene="insA" /locus_tag="SF3735" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3845557..3845952 /gene="insB" /locus_tag="SF3736" /db_xref="GeneID:1026168" CDS 3845557..3845952 /gene="insB" /locus_tag="SF3736" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709474.1" /db_xref="GeneID:1026168" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 3845560..3845949 /gene="insB" /locus_tag="SF3736" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3846467..3848044 /gene="yieC" /locus_tag="SF3737" /db_xref="GeneID:1026158" CDS 3846467..3848044 /gene="yieC" /locus_tag="SF3737" /codon_start=1 /transl_table=11 /product="receptor protein" /protein_id="NP_709475.2" /db_xref="GeneID:1026158" /translation="MAPLAFSAQSLAESLTVEQRLELLEKALRETQSELKKYKDEEKK KYTPATVNRSVSTNDQGYAANPFPTSSAAKPDAVLVKNEEKNASETGSIYSSMTLKDF SKFVKDEIGFSYNGYYRSGWGTASHGSPKSWAIGSLGRFGNEYSGWFDLQLKQRVYNE NGKRVDAVVMIDGNVGQQYSTGWFGDNAGGENFMQFSDMYVTTKGFLPFAPEADFWVG KHGAPKIEIQMLDWKTQRTDAAAGVGLENWKVGPGKIDIALVREDVDDYDRSLQNKQQ INTHTIDLRYKDIPLWDKATLMVSGRYVTANESASEKDNQDNNGYYDWKDTWMFGTSL TQKFDKGGFNEFSFLVANNSIARNFGRYAGASPFTTFNGRYYGDHTGGTAVRLTSQGE AYIGDHFIVANAIVYSFGNNIYSYETGAHSDFESIRAVVRPAYIWDQYNQTGVELGYF TQQNKDANSNKFNESGYKTTLFHTFKVNTSMLTSRLEIRFYATYIKALENELDGFTFE DNKDAQFAVGAQAEIWW" misc_feature 3846512..>3846571 /gene="yieC" /locus_tag="SF3737" /note="Maltoporin periplasmic N-terminal extension; Region: Sugarporin_N; pfam11471" /db_xref="CDD:431901" misc_feature 3846800..3848041 /gene="yieC" /locus_tag="SF3737" /note="The Maltoporin-like channels (LamB porin) form a trimeric structure which facilitate the diffusion of maltodextrins and other sugars across the outer membrane of Gram-negative bacteria. The membrane channel is formed by an 18-strand antiparallel...; Region: Maltoporin-like; cd01346" /db_xref="CDD:238656" misc_feature order(3846806..3846808,3846824..3846826,3846830..3846838, 3846905..3846913,3846959..3846961,3846965..3846967, 3846977..3846985,3846989..3846991,3847052..3847057, 3847061..3847069,3847073..3847075,3847109..3847111, 3847115..3847123,3847127..3847129,3847178..3847186, 3847190..3847195,3847241..3847255,3847298..3847300, 3847304..3847306,3847784..3847786,3847889..3847894, 3847922..3847924,3847928..3847930,3848021..3848023, 3848027..3848029,3848033..3848035,3848039..3848041) /gene="yieC" /locus_tag="SF3737" /note="trimer interface; other site" /db_xref="CDD:238656" misc_feature order(3846821..3846823,3846908..3846910,3846914..3846916, 3847055..3847057,3847127..3847129,3847136..3847138, 3847157..3847159,3847163..3847165,3847172..3847174) /gene="yieC" /locus_tag="SF3737" /note="sugar binding site [chemical binding]; other site" /db_xref="CDD:238656" gene 3848071..3849246 /gene="yieL" /locus_tag="SF3738" /db_xref="GeneID:1026174" CDS 3848071..3849246 /gene="yieL" /locus_tag="SF3738" /note="Code: P; COG: COG2382" /codon_start=1 /transl_table=11 /product="xylanase" /protein_id="NP_709476.2" /db_xref="GeneID:1026174" /translation="MNIKIAALTLAIASGISAQWAIAADMPASPAPTIPVKQYVTQVN ADNSVTFRYFAPGAKNVSVVVGVPVPDNIHPMTKDEAGVWSWRTPILKGNLYEYFFNV DGVRSIDTGTAMTKPQRQVNSSMILVPGSYLDTRSVAHGDLIAITYHSNALQSERQMY VWTPPGYTGMGEPLPVLYFYHGFGDTGRSAIDQGRIPQIMDNLLAEGKIKPMLVVIPD TETDAKGIIPEDFVPQERRKVFYPLNAKAADRELMNDIIPLISKRFSVRKDADGRALA GLSQGGYQALVSGMNHLESFGWLATFSGVTTTTVPDEGVAARLNDPAAINQQLRNFTV VVGDKDVVTGKDIAGLKTELEQKKIKFDYQEYPGLNHEMDVWRPAYAAFVQKFKIRH" misc_feature 3848209..3848457 /gene="yieL" /locus_tag="SF3738" /note="N-terminal Early set domain associated with the catalytic domain of putative esterases; Region: E_set_Esterase_like_N; cd11294" /db_xref="CDD:199894" misc_feature <3848452..3849231 /gene="yieL" /locus_tag="SF3738" /note="Enterochelin esterase or related enzyme [Inorganic ion transport and metabolism]; Region: Fes; COG2382" /db_xref="CDD:441948" gene 3849248..3849970 /gene="yieK" /locus_tag="SF3739" /db_xref="GeneID:1026181" CDS 3849248..3849970 /gene="yieK" /locus_tag="SF3739" /note="Code: G; COG: COG0363" /codon_start=1 /transl_table=11 /product="6-phosphogluconolactonase" /protein_id="NP_709477.1" /db_xref="GeneID:1026181" /translation="MKLIITEDYQEMSRVAAHHLLGYMSKTRRVNLAITAGSTPKGMY EYLTTLVKGKPWYDNCYFYNFDEIPFRGKEGEGVTITNLRNLFFTPAGIKEENIQKLT IDNYREHDQKLAREGGLDLVVLGLGADGHFCGNLPNTTHFHEQTVEFPIQGEMVDIVA HGELGGDFSLVPDSYVTMGPKSIMAAKNLLIIVSGAGKAQALKNVLQGPVTEDVPASV LQLHPSLMVIADKAAAAELAFG" misc_feature 3849248..3849931 /gene="yieK" /locus_tag="SF3739" /note="glucosamine-6-phosphate deaminase; Region: PRK12358" /db_xref="CDD:183470" misc_feature order(3849353..3849364,3849440..3849445,3849620..3849625, 3849638..3849640,3849644..3849646,3849734..3849736, 3849839..3849841) /gene="yieK" /locus_tag="SF3739" /note="active site" /db_xref="CDD:238693" misc_feature order(3849659..3849661,3849665..3849670,3849689..3849691, 3849863..3849883,3849905..3849913) /gene="yieK" /locus_tag="SF3739" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238693" misc_feature order(3849662..3849667,3849680..3849691) /gene="yieK" /locus_tag="SF3739" /note="allosteric site [active]" /db_xref="CDD:238693" misc_feature order(3849707..3849709,3849716..3849748,3849755..3849763) /gene="yieK" /locus_tag="SF3739" /note="active site lid [active]" /db_xref="CDD:238693" misc_feature complement(3850032..3852696) /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790153 (196 aa). BLAST with identity of 98% in 888 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element 3850591..3851438 /note="partial" /mobile_element_type="insertion sequence:ISSfl4" mobile_element 3851431..3852659 /note="partial" /mobile_element_type="insertion sequence:ISSfl4" gene complement(3851559..3851906) /locus_tag="SF3741" /db_xref="GeneID:1026177" CDS complement(3851559..3851906) /locus_tag="SF3741" /note="Code: L; COG: COG3436" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 ORF2" /protein_id="NP_709479.1" /db_xref="GeneID:1026177" /translation="MITLPTGTKIWIIAGITDMRCGFNGLASKVQNTLKDDPFSGHIF VFRGRSGKMVKILWADRDGLCLFAKRLERGRFVWPVTREGKVHLTPAQLSMLLEGIAW QHPKRTERPGIRI" misc_feature complement(3851610..3851879) /locus_tag="SF3741" /note="IS66 family insertion sequence element accessory protein TnpB; Region: IS66_TnpB; NF033819" /db_xref="CDD:411392" gene complement(3851903..3852577) /locus_tag="SF3742" /db_xref="GeneID:1026134" CDS complement(3851903..3852577) /locus_tag="SF3742" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 transposase" /protein_id="NP_709480.1" /db_xref="GeneID:1026134" /translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE FKVRLAKQALQPGAVVARIAREHDINDNLLFKWKSQYEDGLLSDDDIQECMPVPVALT DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE MKGGIR" misc_feature complement(3851960..3852544) /locus_tag="SF3742" /note="IS66-like element accessory protein TnpA; Region: IS66_access_TnpA; NF038385" /db_xref="CDD:439678" gene complement(3852745..3853218) /gene="yieI" /locus_tag="SF3744" /db_xref="GeneID:1026119" CDS complement(3852745..3853218) /gene="yieI" /locus_tag="SF3744" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709481.1" /db_xref="GeneID:1026119" /translation="MSVSRRVIHHGLYFAVLGPLIGVLFLVLYIFFAKEPLVLLVIIQ VLPLFLLLSITTGAIPALLTGVMVACLPEKIGSQKNYRCLAGGIGGVVITEIYCAVIV HIKGMASSELFENILSGDSLVVRIIPALLAGVVMSRIITRLPGLDISCPETDSLS" misc_feature complement(3852748..3853218) /gene="yieI" /locus_tag="SF3744" /note="putative inner membrane protein; Provisional; Region: PRK09823" /db_xref="CDD:170114" gene complement(3853285..3853941) /gene="yieH" /locus_tag="SF3745" /db_xref="GeneID:1026182" CDS complement(3853285..3853941) /gene="yieH" /locus_tag="SF3745" /note="Code: R; COG: COG0637" /codon_start=1 /transl_table=11 /product="6-phosphogluconate phosphatase" /protein_id="NP_709482.1" /db_xref="GeneID:1026182" /translation="MSRIEAVFFDCDGTLVDSEVICSRAYVTMFQEFGITLDPEEVFK RFKGVKLYEIIDIVSLEHGVTLAKTEAEHVYRAEVARLFDSAIEGAGALLSAITAPMC VVSNGPNNKMQHSMGKLNMLHYFPDKLFSGYDIQRWKPDPALMFHAAKAMNVNVENCI LVDDSVAGAQSGIDAGMEVFYFCADPHNKPIVHPKVTTFTHLSQLPELWKARGWDITA " misc_feature complement(3853288..3853941) /gene="yieH" /locus_tag="SF3745" /note="6-phosphogluconate phosphatase; Provisional; Region: PRK10563" /db_xref="CDD:182552" misc_feature complement(order(3853438..3853443,3853450..3853455, 3853525..3853527,3853624..3853629,3853900..3853914)) /gene="yieH" /locus_tag="SF3745" /note="active site" /db_xref="CDD:319828" gene 3854106..3855443 /gene="yieG" /locus_tag="SF3746" /db_xref="GeneID:1026129" CDS 3854106..3855443 /gene="yieG" /locus_tag="SF3746" /note="Code: R; COG: COG2252" /codon_start=1 /transl_table=11 /product="membrane / transport protein" /protein_id="NP_709483.2" /db_xref="GeneID:1026129" /translation="MSHQHTTQTSGQRMLERVFKLREHGTTARTEVIAGFTTFLTMVY IVFVNPQILGVAGMDTSAVFVTTCLIAAFGSIMMGLFANLPVALAPAMGLNAFFAFVV VQAMGLPWQIGMGAIFWGAVGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMG LKNAGVIVANSETLVSIGNLTSHSVLLGILGFFIIAILASRNIHAAVLVSIVVTTLLG WMLGDVHYNGIVSAPPSVMTVVGHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVT DKAGLADEKGKFPRMKQALYVDSISSVTGSFIGTSSVTAYIESSSGVSVGGRTGLTAV VVGLLFLLVIFLSPLAGMVPDYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAV MMPFSFSITEGIALGFISYCVMKIGTGRLRDLSPCVIIVALLFILKIVFIDAH" misc_feature 3854145..3855431 /gene="yieG" /locus_tag="SF3746" /note="Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 (NCS2) family [Nucleotide transport and metabolism]; Region: NCS2; COG2252" /db_xref="CDD:441853" gene complement(3855497..3856063) /gene="yieF" /locus_tag="SF3747" /db_xref="GeneID:1026147" CDS complement(3855497..3856063) /gene="yieF" /locus_tag="SF3747" /note="Code: R; COG: COG0431" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709484.1" /db_xref="GeneID:1026147" /translation="MSEKLQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIA DIPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPEYNYSVPGGLKNAIDWLSRLP DQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQNKVDPQT GEVIDQGTLDHLTGQLTAFGEFIQRVKI" misc_feature complement(3855554..3856045) /gene="yieF" /locus_tag="SF3747" /note="NAD(P)H-dependent FMN reductase [Energy production and conversion]; Region: SsuE; COG0431" /db_xref="CDD:440200" gene complement(3856085..3856834) /gene="yieE" /locus_tag="SF3748" /db_xref="GeneID:1026142" CDS complement(3856085..3856834) /gene="yieE" /locus_tag="SF3748" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709485.2" /db_xref="GeneID:1026142" /translation="MATHFARGILTEGHLISVRLPSQCHQEARNIPPHRQSRFLASRG LLAELMFMLYGIGELPEIVTLPKGKPVFSDKNLPSFSISYAGNMVGVALTTEGECGLD MELQRATRGFHSPHAPDNHTFSSNESLWISKQNDPNEARAQLITLRRSVLKLTGDVLN DDPRDLQLLPIAGRLKCAHVNHVEALCDAEDVLVWSVAVTPAIEKLSVWELDGKHSWK SLPDIHSRANNPTSRMMRFAQLSTVKSFSPN" misc_feature complement(3856343..3856777) /gene="yieE" /locus_tag="SF3748" /note="Phosphopantetheinyl transferase [Coenzyme transport and metabolism]; Region: Sfp; COG2091" /db_xref="CDD:441694" misc_feature complement(3856991..3859217) /note="Similar to Escherichia coli K12 transcriptional regulator LYSR-type gi: 1790147 (320 aa). BLAST with identity of 97% in 742 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element 3857305..3858568 /mobile_element_type="insertion sequence:IS600" gene 3857369..3857671 /locus_tag="SF3749" /db_xref="GeneID:1026160" CDS 3857369..3857671 /locus_tag="SF3749" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_709486.1" /db_xref="GeneID:1026160" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 3857369..3857641 /locus_tag="SF3749" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 3857707..3858525 /locus_tag="SF3750" /db_xref="GeneID:1026136" CDS 3857707..3858525 /locus_tag="SF3750" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_709487.1" /db_xref="GeneID:1026136" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLQTSMSRKGNCYDNAPMESLWGTL KNESLSHYRFNNRDEAILVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMTA" misc_feature <3857707..3858498 /locus_tag="SF3750" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(3859192..3860367) /gene="yidY" /locus_tag="SF3752" /db_xref="GeneID:1026138" CDS complement(3859192..3860367) /gene="yidY" /locus_tag="SF3752" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="multidrug efflux system protein MdtL" /protein_id="NP_709488.1" /db_xref="GeneID:1026138" /translation="MSRFLICSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAF SVYLAGMAAAMLFAGKVADRSGRKPVAIPGAALFIIASVFCSLAETSTLFLAGRFLQG LGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLF WAMAMMGIAVLMLSLFILKETRPASPAASDKPRENSESLLNRFFLSRVVITTLSVSVI LTFVNTSPVLLMEIMGFERGEYATIMALTAGVSMTFSFSTPFALGIFKPRTLMITSQV LFLAAGITLAVSPSHAVSLFGITLICAGFSVGFGVAMSQALGPFSLRAGVASSTLGIA QVCGSSLWIWLAAVVGIGAWNMLIGILIACSIVSLLLIMFVAPGRPVAAHEEIHHHA" misc_feature complement(3859195..3860367) /gene="yidY" /locus_tag="SF3752" /note="MdtL family multidrug efflux MFS transporter; Region: PRK10473" /db_xref="CDD:182486" gene complement(3860499..3861746) /gene="tnaB" /locus_tag="SF3753" /db_xref="GeneID:1026153" CDS complement(3860499..3861746) /gene="tnaB" /locus_tag="SF3753" /note="Code: E; COG: COG0814" /codon_start=1 /transl_table=11 /product="tryptophan permease" /protein_id="NP_709489.1" /db_xref="GeneID:1026153" /translation="MTDQAEKKNSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAF ILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTY AYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISSLAASRITSLFLGLKI ISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIIC YGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNIDSLVKSFLG TKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSHGGRFKTVLLTFLPP ALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVLAIKARKKFPNQMFTVWGGNLIPAIV ILFGITVILCWFGNVFNVLPKFG" misc_feature complement(3860502..3861746) /gene="tnaB" /locus_tag="SF3753" /note="low affinity tryptophan permease TnaB; Region: PRK09664" /db_xref="CDD:182022" gene complement(3861837..3863252) /gene="tnaA" /locus_tag="SF3754" /db_xref="GeneID:1026126" CDS complement(3861837..3863252) /gene="tnaA" /locus_tag="SF3754" /note="Code: E; COG: COG3033" /codon_start=1 /transl_table=11 /product="tryptophanase" /protein_id="NP_709490.2" /db_xref="GeneID:1026126" /translation="MENFKHLPEPFRIRVIEPVKRTTRAYREEAIIKSGMNPFLLDSE DVFIDLLTDSGTGAVTQSMQAAMMRGDEAYSGSRSYYALAESVKNIFGYQYTIPTHQG RGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFD TGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAK KYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPM GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYR IAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIR AVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAANIK GLTFTYEPKVLRHFTAKLKEV" misc_feature complement(3861840..3863240) /gene="tnaA" /locus_tag="SF3754" /note="tryptophanase, leader peptide-associated; Region: tnaA_trp_ase; TIGR02617" /db_xref="CDD:131666" misc_feature complement(order(3862443..3862445,3862452..3862454, 3862563..3862565,3862572..3862574,3862671..3862673, 3862935..3862937,3862944..3862949)) /gene="tnaA" /locus_tag="SF3754" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99742" misc_feature complement(3862443..3862445) /gene="tnaA" /locus_tag="SF3754" /note="catalytic residue [active]" /db_xref="CDD:99742" gene complement(3863473..3863547) /gene="tnaL" /locus_tag="SF3755" /db_xref="GeneID:1026148" CDS complement(3863473..3863547) /gene="tnaL" /locus_tag="SF3755" /codon_start=1 /transl_table=11 /product="tryptophanase" /protein_id="NP_709491.1" /db_xref="GeneID:1026148" /translation="MNILHVCVTSKWFNIDNKIVDHRP" misc_feature complement(3863476..3863547) /gene="tnaL" /locus_tag="SF3755" /note="tryptophanase leader peptide; Provisional; Region: PRK09806" /db_xref="CDD:77417" mobile_element 3863599..3864366 /mobile_element_type="insertion sequence:IS1" gene 3863654..3863929 /gene="insA" /locus_tag="SF3756" /db_xref="GeneID:1026898" CDS 3863654..3863929 /gene="insA" /locus_tag="SF3756" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709492.1" /db_xref="GeneID:1026898" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 3863675..>3863926 /gene="insA" /locus_tag="SF3756" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3863956..3864351 /gene="insB" /locus_tag="SF3757" /db_xref="GeneID:1026123" CDS 3863956..3864351 /gene="insB" /locus_tag="SF3757" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709493.1" /db_xref="GeneID:1026123" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLKLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 3863959..3864348 /gene="insB" /locus_tag="SF3757" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(3864566..3865930) /gene="trmE" /locus_tag="SF3758" /db_xref="GeneID:1026096" CDS complement(3864566..3865930) /gene="trmE" /locus_tag="SF3758" /note="Code: R; COG: COG0486" /codon_start=1 /transl_table=11 /product="tRNA modification GTPase TrmE" /protein_id="NP_709494.1" /db_xref="GeneID:1026096" /translation="MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPR YADYLPFKDADGSVLDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPG LRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLV EALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNDVMADLDAVRAEARQGSLLREGMK VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRE ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVR NKADITGETLGMSEVNGHALIRLSARTGEGVDVLRNHLKQSMGFDTNMEGGFLARRRH LQALEQAAEHLQQGKAQLLGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSF CIGK" misc_feature complement(3864569..3865930) /gene="trmE" /locus_tag="SF3758" /note="tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Region: trmE; PRK05291" /db_xref="CDD:235392" misc_feature complement(3865241..3865264) /gene="trmE" /locus_tag="SF3758" /note="G1 box; other site" /db_xref="CDD:206727" misc_feature complement(order(3864851..3864859,3864917..3864919, 3864923..3864928,3865238..3865249,3865253..3865255)) /gene="trmE" /locus_tag="SF3758" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206727" misc_feature complement(3865169..3865219) /gene="trmE" /locus_tag="SF3758" /note="Switch I region; other site" /db_xref="CDD:206727" misc_feature complement(3865178..3865180) /gene="trmE" /locus_tag="SF3758" /note="G2 box; other site" /db_xref="CDD:206727" misc_feature complement(order(3865046..3865090,3865094..3865126)) /gene="trmE" /locus_tag="SF3758" /note="Switch II region; other site" /db_xref="CDD:206727" misc_feature complement(3865112..3865123) /gene="trmE" /locus_tag="SF3758" /note="G3 box; other site" /db_xref="CDD:206727" misc_feature complement(3864917..3864928) /gene="trmE" /locus_tag="SF3758" /note="G4 box; other site" /db_xref="CDD:206727" misc_feature complement(3864851..3864859) /gene="trmE" /locus_tag="SF3758" /note="G5 box; other site" /db_xref="CDD:206727" gene complement(3866036..3867682) /gene="yidC" /locus_tag="SF3759" /db_xref="GeneID:1026159" CDS complement(3866036..3867682) /gene="yidC" /locus_tag="SF3759" /note="Code: N; COG: COG0706" /codon_start=1 /transl_table=11 /product="insertase" /protein_id="NP_709495.2" /db_xref="GeneID:1026159" /translation="MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQAQQTTQTTTTAA GSAADQGVPASGQGKLISVKTDVLDLTINTRGGDVEQALLPAYPKELNSTQPFQLLET SPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKDAYVLAEGQNELQVPMTYTDAAGNT FTKTFVLKRGDYAVNVNYNVQNAGEKPLEISSFGQLKQSITLPPHLDTGSSNFALHTF RGAAYSTPDEKYEKYKFDTIADNENLNISSKGGWVAMLQQYFATAWIPHNDGTNNFYT ANLGNGIVAIGYKSQPVLVQPGQTGAMNSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQA MRERLGDDKQRISQEMMALYKAEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRQAP FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW FPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS" misc_feature complement(3866039..3867682) /gene="yidC" /locus_tag="SF3759" /note="membrane protein insertase; Provisional; Region: PRK01318" /db_xref="CDD:234942" gene complement(3867906..3868265) /gene="rnpA" /locus_tag="SF3760" /db_xref="GeneID:1026135" CDS complement(3867906..3868265) /gene="rnpA" /locus_tag="SF3760" /note="Code: J; COG: COG0594" /codon_start=1 /transl_table=11 /product="ribonuclease P" /protein_id="NP_709496.1" /db_xref="GeneID:1026135" /translation="MVKLAFPRELRLLTPSQFTFVFQQPQRAGTPQITILGRLNSLGH PRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALS EALEKLWRRHCRLARGS" misc_feature complement(3867918..3868256) /gene="rnpA" /locus_tag="SF3760" /note="ribonuclease P protein component, eubacterial; Region: rnpA; TIGR00188" /db_xref="CDD:211560" gene complement(3868282..3868422) /gene="rpmH" /locus_tag="SF3761" /db_xref="GeneID:1025477" CDS complement(3868282..3868422) /gene="rpmH" /locus_tag="SF3761" /note="Code: J; COG: COG0230" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L34" /protein_id="NP_709497.1" /db_xref="GeneID:1025477" /translation="MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV SK" misc_feature complement(3868291..3868422) /gene="rpmH" /locus_tag="SF3761" /note="Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Region: RpmH; COG0230" /db_xref="CDD:440000" gene 3869029..3870430 /locus_tag="SF3762" /pseudogene="unknown" /db_xref="GeneID:1026131" gene 3870435..3871535 /gene="dnaN" /locus_tag="SF3763" /db_xref="GeneID:1026140" CDS 3870435..3871535 /gene="dnaN" /locus_tag="SF3763" /note="Code: L; COG: COG0592" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit beta" /protein_id="NP_709499.2" /db_xref="GeneID:1026140" /translation="MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSL TGTDLEMEMVARVALVQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGERMLVRSG RSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLF ETEGEELRTVATDGHRLAVCSMPIGQSLPSHSVIVPRKGVIELMRMLDGGDNLLRVQI GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNE KFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKCE NVRMMLTDSVSSVQIEDAASQSAAYVVMPMRL" misc_feature 3870435..3871532 /gene="dnaN" /locus_tag="SF3763" /note="DNA polymerase III subunit beta; Validated; Region: PRK05643" /db_xref="CDD:235541" misc_feature order(3870504..3870506,3870651..3870653,3870672..3870674, 3871026..3871028) /gene="dnaN" /locus_tag="SF3763" /note="putative DNA binding surface [nucleotide binding]; other site" /db_xref="CDD:238082" misc_feature order(3870654..3870656,3870663..3870665,3870741..3870743, 3870747..3870749,3871248..3871250,3871341..3871346) /gene="dnaN" /locus_tag="SF3763" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238082" misc_feature order(3870948..3870950,3870954..3870965,3871392..3871394, 3871518..3871529) /gene="dnaN" /locus_tag="SF3763" /note="beta-clamp/clamp loader binding surface [active]" /db_xref="CDD:238082" misc_feature order(3870948..3870950,3870954..3870959,3871173..3871175, 3871278..3871280,3871317..3871322,3871401..3871403, 3871518..3871529) /gene="dnaN" /locus_tag="SF3763" /note="beta-clamp/translesion DNA polymerase binding surface [active]" /db_xref="CDD:238082" gene 3871535..3872608 /gene="recF" /locus_tag="SF3764" /db_xref="GeneID:1026144" CDS 3871535..3872608 /gene="recF" /locus_tag="SF3764" /note="Code: L; COG: COG1195" /codon_start=1 /transl_table=11 /product="recombination protein F" /protein_id="NP_709500.1" /db_xref="GeneID:1026144" /translation="MSLTRLLIRDFRNIETADLALSPGFNFLVGANGSGKTSVLEAIY TLGHGRAFRSLQIGRVIRHEQEAFVLHGRLQGEERETAIGLTKDKQGDSKVRIDGTDG HKVAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEPGFFTAWSNLKRLLKQ RNAALRQVTRYEQLRPWDKELIPLAEQISTWRAEYSAGIAADMDDTCKQFLPEFSLTF SFQRGWEKETEYAEVLERNFERDRQLTYTAHGPHKADLRIRADGAPVEDTLSRGQLKL LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDERRGLLASRLKATQSQVFVSAISA EHVIDMSDENSKMFTVEKGKITD" misc_feature 3871535..3872599 /gene="recF" /locus_tag="SF3764" /note="recF protein; Region: recf; TIGR00611" /db_xref="CDD:273173" gene 3872637..3875051 /gene="gyrB" /locus_tag="SF3765" /db_xref="GeneID:1026143" CDS 3872637..3875051 /gene="gyrB" /locus_tag="SF3765" /note="Code: L; COG: COG0187" /codon_start=1 /transl_table=11 /product="DNA gyrase subunit B" /protein_id="NP_709501.2" /db_xref="GeneID:1026143" /translation="MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV DNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHGVPQAPLAVTGET EKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS QTKDKLVSSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT LLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL HTNASAPALAGEALEKLVSEYNATQKMINRMERRYPKAMLKELIYQPTLTEADLSDEQ TVTRWVNALVSELNDKEQHGSQWKFDVHTNAEQNLFEPIVRVRTHGVDTDYPLDHEFI TGGEYRRICTLGEKLRGLLEEDAFIERGERRQPVASFEQALDWLVKESRRGLSIQRYK GLGEMNPEQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALK AANIDI" misc_feature 3872637..3875048 /gene="gyrB" /locus_tag="SF3765" /note="DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939" /db_xref="CDD:237860" gene 3875291..3875689 /gene="yidB" /locus_tag="SF3766" /db_xref="GeneID:1026103" CDS 3875291..3875689 /gene="yidB" /locus_tag="SF3766" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709502.2" /db_xref="GeneID:1026103" /translation="MGLFDEVVGAFLKGDAGKYQAILSWVEEQGGIQVLLEKLQSGGL GAILSTWLSNQQRNQSVSGEQLESALGTNAVSDLGQKLGVDTSTASSLLAEQLPKIID ALSPQGEVSAQANNDLLSAGMELLKGKLFR" misc_feature 3875291..3875686 /gene="yidB" /locus_tag="SF3766" /note="hypothetical protein; Provisional; Region: PRK11426" /db_xref="CDD:183130" gene 3875803..3876615 /gene="yidA" /locus_tag="SF3767" /db_xref="GeneID:1026098" CDS 3875803..3876615 /gene="yidA" /locus_tag="SF3767" /note="Code: R; COG: COG0561" /codon_start=1 /transl_table=11 /product="sugar phosphate phosphatase" /protein_id="NP_709503.1" /db_xref="GeneID:1026098" /translation="MAIKLIAIDMDGTLLLPDHTISPAVKNAIAAARARGVNVVLTTG RPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLEKLSRE VGSHFHALDRTTLYTANRDISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEP AILDQAIARIPQEVKEKYTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAI GDQENDIAMIEYAGVGVAMDNAIPSVKEVANFVTKSNLEDGVAFAIEKYVLN" misc_feature 3875803..3876612 /gene="yidA" /locus_tag="SF3767" /note="sugar phosphate phosphatase; Provisional; Region: PRK10513" /db_xref="CDD:182509" gene complement(3876661..3877317) /locus_tag="SF3768" /db_xref="GeneID:1026117" CDS complement(3876661..3877317) /locus_tag="SF3768" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709504.1" /db_xref="GeneID:1026117" /translation="MKLNFKGFFKAAGLFPLALMLSGCISYALVSHTAKGSSGKYQSQ SDTITGLSQAKDSNGTKGYVFVGESLDYLITDGADDIVKMLNDPALNRHNIQVADDAR FVLNAGKKKFTGTISLYYYWNNEEEKALATHYGFACGVQHCTRSLENLKGTIHEKNKN MDYSKVMAFYHPFKVRFYEYYSPRGIPDGVSAALLPVTVTLDIITAPLQFLVVYAVNQ " misc_feature complement(3876664..3877314) /locus_tag="SF3768" /note="hypothetical protein; Provisional; Region: PRK10215" /db_xref="CDD:236663" gene 3877595..3878284 /gene="yidW" /locus_tag="SF3769" /db_xref="GeneID:1026100" CDS 3877595..3878284 /gene="yidW" /locus_tag="SF3769" /codon_start=1 /transl_table=11 /product="dgo operon regulator" /protein_id="NP_709505.1" /db_xref="GeneID:1026100" /translation="MTLNKTDRIVITLGKQIVHGKYVPGSPLPAEAELCEEFATSRNI IREVFRSLMAKRLIEMKRYRGAFVAPRNQWNYLDTDVLQWVLENDYDPRLISAMSEVR NLVEPAIARWAAERATSSDLAQIESALNEMIANNQDREAFNEADIRYHEAVLQSVHNP VLQQLSIAISSLQRAVFERTWMGDEANMPQTLQEHKALFDAIRHQDGDAAEQAALTMI ASSTRRLKEIT" misc_feature 3877610..3878275 /gene="yidW" /locus_tag="SF3769" /note="DNA-binding transcriptional regulator, FadR family [Transcription]; Region: FadR; COG2186" /db_xref="CDD:441789" gene 3878281..3879159 /gene="dgoK" /locus_tag="SF3770" /db_xref="GeneID:1026099" CDS 3878281..3879159 /gene="dgoK" /locus_tag="SF3770" /codon_start=1 /transl_table=11 /product="2-oxo-3-deoxygalactonate kinase" /protein_id="NP_709506.1" /db_xref="GeneID:1026099" /translation="MTARYIAIDWGSTNLRAWLYQGDHCLESRQSEAGVTRLNGKSPA AVLAEVTTDWREENTPVVMAGMVGSNVGWKVAPYLSVPARFSSIGEQLTSVGDNIWII PGLCVSHDDNHNVMRGEETQLIGARALAPSSLYVMPGTHCKWVQADSQQINDFRTVMT GELHHLLLNHSLIGAGLPPQENSADAFAAGLERGLNAPAILPQLFEVRASHVLGTLPR EQVSEFLSGLLIGAEVASMRDYVTHQHAITLVAGTSLTARYQQAFQAMGCDVAAVAGD TAFQAGIRSIAHAVAN" misc_feature 3878281..3879156 /gene="dgoK" /locus_tag="SF3770" /note="2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]; Region: DgoK; COG3734" /db_xref="CDD:442948" gene 3879143..3880905 /gene="dgoA" /locus_tag="SF3771" /pseudo /db_xref="GeneID:1026093" misc_feature 3879143..3880905 /gene="dgoA" /locus_tag="SF3771" /note="Similar to Escherichia coli K12 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase gi: 2367262 (588 aa). BLAST with identity of 97% in 588 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 3880980..3882317 /gene="dgoT" /locus_tag="SF3772" /db_xref="GeneID:1026102" CDS 3880980..3882317 /gene="dgoT" /locus_tag="SF3772" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="D-galactonate transport protein" /protein_id="NP_709507.1" /db_xref="GeneID:1026102" /translation="MVSGFAMPKIWRKLAMDIPVNAAKPGRRRYLTLVMIFITVVICY VDRANLAVASAHIQEKFGITKAEMGYVFSAFAWLYTLCQIPGGWFLDRVGSRVTYFIA IFGWSVATLFQGFATGLMSLIGLRAITGIFEAPAFPTNNRMVTSWFPEHERASAVGFY TSGQFVGLAFLTPLLIWIQEMLSWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKGISKA ELDYIRDGGGLVDGDAPVKKEARQPLTAKDWKLVFHRKLIGVYLGQFAVASALWFFLT WFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVADLLVRKGFSLGFARKTPII CGLLISTCIMGANYTNDPMMIMCLMALAFFGNGFASITWSLVSSLAPMRLIGLTGGVF NFAGGLGGITVPLVVGYLAQGYGFAPALVYISAVALIGALSYILLVGDVKRVG" misc_feature 3881091..3882293 /gene="dgoT" /locus_tag="SF3772" /note="D-galactonate transporter; Region: 2A0114; TIGR00893" /db_xref="CDD:273326" gene complement(3882278..3883378) /gene="yidS" /locus_tag="SF3773" /db_xref="GeneID:1026116" CDS complement(3882278..3883378) /gene="yidS" /locus_tag="SF3773" /note="Code: C; COG: COG0644" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_709508.2" /db_xref="GeneID:1026116" /translation="MEHFDVAIIGLGPAGSALARKLAGKMQVIALDKKHQCGTEGFSK PCGGLLAPDAQRSFIRDGLTLPVDVIANPQIFSVKTVDVAASLTRNYQRSYININRHA FDLWMKSLIPASVEVYHDSLCRKIWREDDKWHVIFRADGWEQHITARYLVGADGANSM VRRHLYPDHQIRKYVAIQQWFAEKHPVPFYSCIFDNAITDCYSWSISKDGYFIFGGAY PMKDGQTRFTTLKEKMSAFQFQFGKAVKSEKCTVLFPSRWQDFVCGKDNAFLIGEAAG FISASSLEGISYALDSAEILRAVFLKQPEKSNAAYWRATHKLRLKLFGKIVKSRCLTA PALRKWIMRSGVAHIPQLKDYPTRFTSPTSRM" misc_feature complement(3882320..3883372) /gene="yidS" /locus_tag="SF3773" /note="FAD-binding protein; Region: PRK11445" /db_xref="CDD:183139" gene 3883443..3884717 /gene="yidR" /locus_tag="SF3774" /db_xref="GeneID:1026105" CDS 3883443..3884717 /gene="yidR" /locus_tag="SF3774" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709509.1" /db_xref="GeneID:1026105" /translation="MMAGTVLYQDRAMKQITFAPRNHLLTNTNTNTNTNTNTWTPDSQ WLVFDVRPSGASFTGETIERVNIHTGEVEVIYRASQGAHVGVVTVHPKSEKYVFIHGP ENPDETWHYDFHHRRGVIAEGGKVSNLDAMDITAPYTPGALRGGSHVHVFSPNGERGS FTYNDHVMHQLDPALDLRNVGVAAPFGPVNVQKQHPREYSGSHWCVLVSKTTPTPQPG SDEINRAYEEGWVGNHALAFIGDTLSPKGEKVPELFIVELPQDEASWKSAGDAPLSGT ETTLPAPPRGVVQRRLTFTHHRAYPGLVNVPRHWVRCNPQGTQIAFLMRDDNGIVQLW LISPQGGEPRKLTHNKTDIQSAFNWHPSGEWLGFVLDNRIVCAHAQSGEVEYLTENHA NPPSADAVVFSPDGQWLAWMEGGQLWITETDR" misc_feature 3883689..3884036 /gene="yidR" /locus_tag="SF3774" /note="Protein of unknown function (DUF3748); Region: DUF3748; pfam12566" /db_xref="CDD:432640" misc_feature 3884310..3884711 /gene="yidR" /locus_tag="SF3774" /note="Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport]; Region: TolB; COG0823" /db_xref="CDD:440585" gene complement(3884719..3885126) /gene="yidQ" /locus_tag="SF3775" /db_xref="GeneID:1026106" CDS complement(3884719..3885126) /gene="yidQ" /locus_tag="SF3775" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709510.4" /db_xref="GeneID:1026106" /translation="MMMLFSARDRYNSSGQHPRSTDEFIMIRNVLLAFMICSGMTLLG GCSSVMSHTGGKEGTYPGTRASATMIGDDETNWGTKSLAILDMPFTAVMDTLLLPWDV FRKDSSVRSRVEKSEANAQATNAVIPPARMPDN" misc_feature complement(3884722..3885048) /gene="yidQ" /locus_tag="SF3775" /note="hypothetical protein; Provisional; Region: PRK11616" /db_xref="CDD:183233" gene 3885356..3885769 /gene="ibpA" /locus_tag="SF3776" /db_xref="GeneID:1026089" CDS 3885356..3885769 /gene="ibpA" /locus_tag="SF3776" /note="Code: O; COG: COG0071" /codon_start=1 /transl_table=11 /product="heat shock protein IbpA" /protein_id="NP_709511.2" /db_xref="GeneID:1026089" /translation="MRNFDLSPLYRSAIGFDRLFNHLENNQSQSNGGYPPYNVELVDE NHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLA ENIHVRGANLVNGLLYIDLERVIPEAKKPRRIEIN" misc_feature 3885356..3885766 /gene="ibpA" /locus_tag="SF3776" /note="heat shock chaperone IbpA; Region: PRK10743" /db_xref="CDD:182691" misc_feature order(3885464..3885478,3885503..3885505,3885509..3885511, 3885515..3885520,3885644..3885646,3885698..3885703) /gene="ibpA" /locus_tag="SF3776" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:107227" gene 3885881..3886309 /gene="ibpB" /locus_tag="SF3777" /db_xref="GeneID:1026113" CDS 3885881..3886309 /gene="ibpB" /locus_tag="SF3777" /note="Code: O; COG: COG0071" /codon_start=1 /transl_table=11 /product="heat shock chaperone IbpB" /protein_id="NP_709512.2" /db_xref="GeneID:1026113" /translation="MRNFDLSPLMRQWIGFDKLANALQNAGESQSFPPYNIEKSDDNH YRITLALAGFRQEDLEIQLEGTRLSVKGTPEQPKEEKKWLHQGLMNQPFSLSFTLAEN MEVSGATFVNGLLHIDLIRNEPEPIAAQRIAISERPALNS" misc_feature 3885881..3886306 /gene="ibpB" /locus_tag="SF3777" /note="heat shock chaperone IbpB; Provisional; Region: PRK11597" /db_xref="CDD:183223" misc_feature order(3885983..3885997,3886022..3886024,3886028..3886030, 3886034..3886039,3886163..3886165,3886217..3886222) /gene="ibpB" /locus_tag="SF3777" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:107227" gene complement(3886314..3886475) /locus_tag="SF3777a" /db_xref="GeneID:16608367" CDS complement(3886314..3886475) /locus_tag="SF3777a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439292.1" /db_xref="GeneID:16608367" /translation="MLRIMAESVKQICLIAHIITGKNVPKYLKQSKFNALLKKKDKKS PTRMAGQRE" gene 3886505..3888166 /gene="yidE" /locus_tag="SF3778" /db_xref="GeneID:1026899" CDS 3886505..3888166 /gene="yidE" /locus_tag="SF3778" /note="Code: R; COG: COG2985" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709513.2" /db_xref="GeneID:1026899" /translation="MSDIALTVSILALVAVVGLFIGNVKFRGIGLGIGGVLFGGIIVG HFVSQAGMTLSSDMLHVIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVI IGGLVTAILHKLFDIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPMEMVDQMGMSY AMAYPFGICGILFTMWMLRVIFRVNVETEAQQHESSRTNGGALIKTINIRVENPNLHD LAIKDVPILNGDKIICSRLKREETLKVPSPDTIIQLGDLLHLVGQPADLHNAQLVIGQ EVDTSLSTKGTDLRVERVVVTNENVLGKRIRDLHFKERYDVVISRLNRAGVELVASGD ISLQFGDILNLVGRPSAIDAVANVLGNAQQKLQQVQMLPVFIGIGLGVLLGSIPVFVP GFPAALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLSVVGLKS GGDFVNTLVNGEGLSWIGYGALITAVPLITVGILARMLAKMNYLTMCGMLAGSMTDPP ALAFANNLHPTSGAAALSYATVYPLVMFLRIITPQLLAVLFWSIG" misc_feature 3886505..3888160 /gene="yidE" /locus_tag="SF3778" /note="putative transporter; Validated; Region: PRK03818" /db_xref="CDD:179654" gene complement(3888205..3888879) /gene="yidP" /locus_tag="SF3779" /db_xref="GeneID:1026114" CDS complement(3888205..3888879) /gene="yidP" /locus_tag="SF3779" /note="Code: K; COG: COG2188" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_709514.1" /db_xref="GeneID:1026114" /translation="MIYKSIAERLRIRLNSADFTLNSLLPGEKKLAEEFAVSRMTIRK AIDLLVAWGLVVRRHGSGTYLVRKDVLHQTASLTGLVEVLKRQGKTVTSQVLIFEIMP APPAIASQLRIQINEQIYFSRRVRFVEGKPLMLEDSYMPVKLFRNLSLQHLEGSKFEY IEQECGILIGGNYESLMPVLADRLLARQMKVAEHTPLLRITSLSYSESGEFLNYSVMF RNASEY" misc_feature complement(3888226..3888876) /gene="yidP" /locus_tag="SF3779" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: MngR; COG2188" /db_xref="CDD:441791" gene 3889174..3890790 /gene="glvB" /locus_tag="SF3780" /db_xref="GeneID:1026110" CDS 3889174..3890790 /gene="glvB" /locus_tag="SF3780" /note="Code: G; COG: COG1263" /codon_start=1 /transl_table=11 /product="PTS system arbutin-specific transporter subunit IIB" /protein_id="NP_709515.3" /db_xref="GeneID:1026110" /translation="MLSQIQRFGGAMFTPVLLFPFAGIVVGLAILLQNPMFVGESLTD PNSLFAQIVHIIEEGGWTVFRNMPLIFAVGLPIGLAKQAQGRACLAVMVSFLTWNYFI NAMGMTWGSYFGVDFTQDAVAGSGLTMMAGIKTLDTSIIGAIIISGIVTALHNRLFDK KLPVFLGIFQGTSYVVIIAFLVMIPCAWLTLLGWPKVQMGIESLQAFLRSAGALGVWV YTFLERILIPTGLHHFIYGPFIFGPAAVEGGIQMYWAQHLQEFSLSAEPLKSLFPEGG FALHGNSKIFGAVGISLAMYFTAAPENRVKVAGLLIPATLTAMLVGITEPLEFTFLFI SPLLFAVHAVLAASMSTVMYLFGVVGNMGGGLIDQVLPQNWIPMFSNHADMMLTQIAI GLCFTLLYFVVFRTLILQFNMCTPGREDAEVKLYSKAEYKASRGQTTAAEPKKELDQA AGILQALGGVGNISSINNCATRLRIALHDMSQTLDDEVFKKLGAHGVFRSGDAIQVII GLHVSQLREQLDSLINSHQSAENVAITEAV" misc_feature 3889177..3890742 /gene="glvB" /locus_tag="SF3780" /note="PTS system, alpha-glucoside-specific IIBC component; Region: PTS-IIBC-alpha; TIGR02005" /db_xref="CDD:273925" gene 3890790..3891428 /gene="glvG" /locus_tag="SF3781" /pseudo /db_xref="GeneID:1023508" misc_feature 3890790..3891428 /gene="glvG" /locus_tag="SF3781" /note="Similar to Escherichia coli K12 probable 6-phospho-beta-glucosidase gi: 1790115 (213 aa). BLAST with identity of 98% in 213 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(3891601..3892494) /gene="yidL" /locus_tag="SF3782" /db_xref="GeneID:1026121" CDS complement(3891601..3892494) /gene="yidL" /locus_tag="SF3782" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_709516.1" /db_xref="GeneID:1026121" /translation="MNGKLQSSDVKNETPYNIPLLINENVISSGISLISLWHTYADEH YRVIWPRDKKKPLIANSWVAVYTVQGCGKILLKNGEQITLHSNCIIFLKPMDIHSYHC EGLVWEQYWMEFTPTSMMDIPVGQQSVIYNGEIYNQELTEVAELITSPEAIKNNLAVA FLTKIIYQWICLMSADGKKDPQRRQIEKLIATLHASLQQRWSVADMAATIPCSEAWLR RLFLRYTGKTPKEYYLDARLDLALSLLKQQGNSVGEVADTLNFFDSFHFSKAFKHKFG YAPSAVLKNTDQHPTDASPHN" misc_feature complement(3891640..>3892206) /gene="yidL" /locus_tag="SF3782" /note="AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:441809" misc_feature complement(3891652..3891897) /gene="yidL" /locus_tag="SF3782" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:197666" gene 3892661..3894376 /gene="yidK" /locus_tag="SF3783" /db_xref="GeneID:1026122" CDS 3892661..3894376 /gene="yidK" /locus_tag="SF3783" /note="Code: EHR; COG: COG0591" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709517.1" /db_xref="GeneID:1026122" /translation="MNSLQILSFVGFTLLVAVITWWKVRKTDTGSQQGYFLAGRSLKA PVIAASLMLTNLSTEQLVGLSGQAYKSGMSVMGWEVTSAVTLIFLALIFLPRYLKRGI ATIPDFLEERYDKTTRIIIDFCFLIATGVCFLPIVLYSGALALNSLFHVGESLQISHG AAIWLLVILLGLAGILYAVIGGLRAMAVADSINGIGLVIGGLMVPVFGLIAIGKGSFM QGIEQITTVHAEKLNSVGGPTDPLPIGAAFTGLILVNTFYWCTNQGIVQRTLASKSLA EGQKGALLTAVLKMLDPLVLVLPGLIAFHLYQDLPKADMAYPTLVNNVLPVPLEGFFG AVLFGAVISTFNGFLNSASTLFSMGIYRRIINQNAEPQQLVTVGRKFGFFIAIVSVLV APWIANAPQGLYSWMKQLNGIYNVPLVTIIIMGFFFPRIPALAAKVAMGIGIISYITI NYLVKFDFHFLYVLACTFCINVVVMLVIGFIKPRATPFTFKDAFAVDMKPWKNVKIAS IGILFAMIGVYVGLAEFGGYGTRWLAMISYFIAAVVIVYLIFDSWWHRHDPAVTFTPD AKDSL" misc_feature 3892670..3894229 /gene="yidK" /locus_tag="SF3783" /note="putative transporter; Provisional; Region: PRK10484" /db_xref="CDD:236699" misc_feature order(3892817..3892819,3892826..3892828,3893678..3893680, 3893687..3893692) /gene="yidK" /locus_tag="SF3783" /note="Na binding site [ion binding]; other site" /db_xref="CDD:271362" gene 3894388..3895853 /gene="yidJ" /locus_tag="SF3784" /pseudo /db_xref="GeneID:1026081" misc_feature 3894388..3895853 /gene="yidJ" /locus_tag="SF3784" /note="Similar to Escherichia coli K12 sulfatase gi: 1790112 (498 aa). BLAST with identity of 97% in 489 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(3895900..3896313) /gene="yidI" /locus_tag="SF3785" /db_xref="GeneID:1026063" CDS complement(3895900..3896313) /gene="yidI" /locus_tag="SF3785" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709518.1" /db_xref="GeneID:1026063" /translation="MGIIAQNKISSLGMLFGAIALMMGIIHFSFGPFSAPPPTLESIV ADKTAEIKRGLLAGIKGEKITTVEKKEDMDIDKILDQSGIALAIAALLCAFIGGMRKE NRWGIRGALVFGIGIVCSILLIFLIFSFLTGGSLV" gene 3896422..3896769 /gene="yidH" /locus_tag="SF3786" /db_xref="GeneID:1026130" CDS 3896422..3896769 /gene="yidH" /locus_tag="SF3786" /note="Code: S; COG: COG2149" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709519.1" /db_xref="GeneID:1026130" /translation="MKISRLGEAPDYRFSLANERTFLAWIRTALGFLAAGVGLDQLAP DFATPVIRELLALLLCLFSGGLAMYGYLRWLRNEKAMRLKEDLPYTNSLLIISLILMV VAVIVMGLVLYAG" misc_feature 3896440..3896757 /gene="yidH" /locus_tag="SF3786" /note="Uncharacterized membrane protein YidH, DUF202 family [Function unknown]; Region: YidH; COG2149" /db_xref="CDD:441752" gene 3896759..3897121 /gene="yidG" /locus_tag="SF3787" /db_xref="GeneID:1023527" CDS 3896759..3897121 /gene="yidG" /locus_tag="SF3787" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709520.1" /db_xref="GeneID:1023527" /translation="MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWH QAGMLFWISIGILAIVALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAI LFAVTHIHQLIVFIERVA" misc_feature 3896792..3896953 /gene="yidG" /locus_tag="SF3787" /note="Domain of unknown function (DUF202); Region: DUF202; pfam02656" /db_xref="CDD:396980" gene 3897118..3897615 /gene="yidF" /locus_tag="SF3788" /db_xref="GeneID:1026056" CDS 3897118..3897615 /gene="yidF" /locus_tag="SF3788" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_709521.1" /db_xref="GeneID:1026056" /translation="MTGSQVIDAEEDRHKLVVEYKDALQPADFYHNFKQRGIRSVQLI PYLEFDDRGDLTAASVTAELWGKFLIALFECWVRADISRISIELFDATLQKWCGSENP QPRRDCQACDWHRLCPHARQETPDSVLCAGYQAFYSYSAPHMRVMRDLIKQHRSPMEL MTMLR" misc_feature <3897166..3897612 /gene="yidF" /locus_tag="SF3788" /note="anaerobic sulfatase-maturation protein; Region: PRK13745" /db_xref="CDD:237489" gene complement(3897623..3898675) /gene="emrD" /locus_tag="SF3789" /db_xref="GeneID:1026115" CDS complement(3897623..3898675) /gene="emrD" /locus_tag="SF3789" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="multidrug resistance protein D" /protein_id="NP_709522.1" /db_xref="GeneID:1026115" /translation="MQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATL VAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPL LAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLTSYKTLF GNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWF AGRPNKRFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLA TSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVL CWLPLATRMSHQGQPV" misc_feature complement(3897626..3898675) /gene="emrD" /locus_tag="SF3789" /note="multidrug transporter EmrD; Region: emrD; PRK11652" /db_xref="CDD:183259" gene 3898736..3900334 /gene="ilvB" /locus_tag="SF3790" /db_xref="GeneID:1026127" CDS 3898736..3900334 /gene="ilvB" /locus_tag="SF3790" /note="Code: EH; COG: COG0028" /codon_start=1 /transl_table=11 /product="acetolactate synthase catalytic subunit" /protein_id="NP_709523.1" /db_xref="GeneID:1026127" /translation="MTGIPGGSILPVYDALSQSTQIRHILARHEQGAGFIAQGMARTD GKPAVCMACSGPGATNLVTAIADARLDSIPLICITGQVPASMIGTDAFQEVDTYGISI PITKHNYLVRHIEELPQVMSDAFRIAQSGRPSPVWIDIPKDVQTAVFEIEAQPAVAEK AVAPAFSEESIRDAATMINAAKRPVLYLGGGVINAPARVRELAEKAQLPTTMTLMALG MLPKAHPLSLGMLGMHGVRSTNYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHV DIDRAELGKIKQPHVAIQADVDDVLAQLIPRVEAQPRAEWHQLVADLQREFPCPIPKA CDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFG LPAAIGAALANPDRKVLCFSGDGSLMMNIQEMATASENQLDVKIILMNNEALGLVHQQ QSLFYEQGVFAATYPGKINFMQIAAGFGLETCDLNNEADPQAALQEIINRPGPALIHV RIDAEEKVYPMVPPGAANTEMVGE" misc_feature 3898736..3900331 /gene="ilvB" /locus_tag="SF3790" /note="acetolactate synthase large subunit; Region: PRK08155" /db_xref="CDD:181257" gene 3900338..3900628 /gene="ilvN" /locus_tag="SF3791" /db_xref="GeneID:1026109" CDS 3900338..3900628 /gene="ilvN" /locus_tag="SF3791" /note="Code: E; COG: COG0440" /codon_start=1 /transl_table=11 /product="acetolactate synthase 1 regulatory subunit" /protein_id="NP_709524.1" /db_xref="GeneID:1026109" /translation="MQNTTHNNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPI QDSDKSHIWLLVNDDQRLEQMISQIAKLEDVVKVQRNQSDPTMFNKIAVFFQ" misc_feature 3900338..3900625 /gene="ilvN" /locus_tag="SF3791" /note="acetolactate synthase 1 small subunit; Region: PRK08178" /db_xref="CDD:236174" misc_feature order(3900380..3900382,3900386..3900388,3900401..3900403, 3900440..3900445,3900458..3900460,3900485..3900487) /gene="ilvN" /locus_tag="SF3791" /note="putative valine binding site [chemical binding]; other site" /db_xref="CDD:153150" misc_feature order(3900392..3900397,3900404..3900406,3900425..3900427, 3900434..3900436,3900446..3900460,3900488..3900490) /gene="ilvN" /locus_tag="SF3791" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153150" gene 3900703..3901293 /gene="uhpA" /locus_tag="SF3792" /db_xref="GeneID:1026111" CDS 3900703..3901293 /gene="uhpA" /locus_tag="SF3792" /note="Code: TK; COG: COG2197" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator UhpA" /protein_id="NP_709525.2" /db_xref="GeneID:1026111" /translation="MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP GRGVQVCICDISMPDISGLELLSQLPKGMATIMLSVHDSPALVEQALNAGARGFLSKR CSPDELIAAVHTVATGGCYLTPDIAIKLASGRQDPLTKRERQVAEKLAQGMAVKEIAA ELGLSPKTVHVHRANLMEKLGVSNDVELARRMFDGW" misc_feature 3900703..3901290 /gene="uhpA" /locus_tag="SF3792" /note="transcriptional regulator UhpA; Region: PRK10360" /db_xref="CDD:182408" gene 3901293..3902795 /gene="uhpB" /locus_tag="SF3793" /db_xref="GeneID:1026087" CDS 3901293..3902795 /gene="uhpB" /locus_tag="SF3793" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="sensory histidine kinase UhpB" /protein_id="NP_709526.2" /db_xref="GeneID:1026087" /translation="MKTLFSRLITVIACFFIFSAAWFCLWSISLHLVERPDMAVLLFP FGLRLGLMLQCPRGYWPVLLGAEWLLIYWLTQAVGLTHFPLLMIGSLLTLLPVALISR YRHQRDWRTLLLQGAALTAAALLQSLPWLWHGKESWNALLLTLTGGLTLAPICLVFWH YLANNTWLPLGPSLVSQPINWRGRHLVWYLLLFVISLWLQLGLPDELSRFTPFCLALP IIALAWHYGWQGALIATLMNAIALIASQTWRDHLVDLLLSLLVQSLTGLLLGAGIQRL RELNQSLQKELARNQHLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLA ADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLEQAIRSLMREMELEGRG IVSHLEWRIDESALSENQRVTLFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIE DDGSGLPPGSGQQGFGLTGMRERVTALGGTLHISCLHGTRVSVSLPQRYV" misc_feature 3901302..3902786 /gene="uhpB" /locus_tag="SF3793" /note="signal transduction histidine-protein kinase/phosphatase UhpB; Region: PRK11644" /db_xref="CDD:236945" gene 3902805..3904124 /gene="uhpC" /locus_tag="SF3794" /db_xref="GeneID:1026900" CDS 3902805..3904124 /gene="uhpC" /locus_tag="SF3794" /note="Code: G; COG: COG2271" /codon_start=1 /transl_table=11 /product="regulatory protein UhpC" /protein_id="NP_709527.2" /db_xref="GeneID:1026900" /translation="MLPFLKAPADAPLMTDKHEIDARYRYWRRHILLTIWLGYALFYF TRKSFNAAVPEILANGVLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL IATGIMNILFGFSTSLWAFAVLWVLNAFFQGWGSPVCARLLTAWYSRTERGGWWALWN TAHNVGGALIPIVMAASALHYGWRAGMMIAGCMAIVVGIFLCWRLRDRPQALGLPAVG EWRHDALEIAQQQEGAGLTRKEILTKYVLLNPYIWLLSFCYVLVYVVRAAINDWGNLY MSETLGVDLVTANTAVTMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG SLWLMPFASYVMQATCFFTIGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLG ASLAGWPLAKVLDTWHWSGFFVVISIAAGISALLLLPFLNAQTPREA" misc_feature 3902826..3904121 /gene="uhpC" /locus_tag="SF3794" /note="glucose-6-phosphate receptor/MFS transporter UhpC; Region: PRK11663" /db_xref="CDD:183266" gene 3904262..3905653 /gene="uhpT" /locus_tag="SF3795" /db_xref="GeneID:1026108" CDS 3904262..3905653 /gene="uhpT" /locus_tag="SF3795" /note="Code: G; COG: COG2271" /codon_start=1 /transl_table=11 /product="sugar phosphate antiporter" /protein_id="NP_709528.1" /db_xref="GeneID:1026108" /translation="MLAFLNQVRKPTLDLPLEVRRKMWFKPFMQSYLVVFIGYLTMYL IRKNFNIAQNDMISTYGLSMTQLGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFML ILSAICMLGFSASMGSGSVSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTF LGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRYGSDSPE SYGLGKAEELFGEEISEEDKETESTDMTKWQIFVEYVLKNKVIWLLCFANIFLYVVRI GIDQWSTVYAFQELKLSKAVAIQGFTLFEAGALVGTLLWGWLSDLANGRRGLVACIAL ALIIATLGVYQHASNEYIYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKG TFAYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDIAAIGCICLMAIVAVMEERK IRREKKIQQLTVA" misc_feature 3904265..3905641 /gene="uhpT" /locus_tag="SF3795" /note="hexose-6-phosphate:phosphate antiporter; Region: uhpT; PRK09556" /db_xref="CDD:236564" gene complement(3905699..3907465) /gene="yicP" /locus_tag="SF3796" /db_xref="GeneID:1026080" CDS complement(3905699..3907465) /gene="yicP" /locus_tag="SF3796" /note="Code: F; COG: COG1001" /codon_start=1 /transl_table=11 /product="cryptic adenine deaminase" /protein_id="NP_709529.1" /db_xref="GeneID:1026080" /translation="MNNSINHKFHHISRAEYQELLAVSRGDAVADYIIDNVSILDLIN AGEISGPIVIKGRYIAGVGAEYADTPALQRIDARGATAVPGFIDAHLHIESSMMTPVT FETATLPRGLTTVICDPHEIVNVMGEAGFAWFARCAEQARQNQYLQVSSCVPALEGCD VNGASFTLEQMLAWRDHPQVTGLAEMMDYPGVINGQNALLDKLDAFRYLTLDGHCPGL GGKELNAYIAAGIENCHESYQLEEGRRKLQLGMSLMIREGSAASNLNALAPLINEFNS PQCMLCTDDRNPWEIAHEGHIDALIRRLIEQHNVPLHVAYRVASWSTARHFGLNHLGL LAPGKQADIVLLSDARKVTVQQVLVKGEPIDAQTLQAEESARLALSAPPYGNTIARQP VSASDFALQFTPGKRYRVIDVIHNELITHSRSSVYSENGFDRDDVCFIAVLERYGQRL APACGLLGGFGLNEGALAATVSHDSHNIVVIGRSAEEMALAVNQVIQDGGGLCVVRNG QVQSHLPLPIAGLMSTDTAQSLAEQIDALKAAARECGPLPDEPFIQMAFLSLPVIPAL KLTSQGLFDGEKFAFTTLEVTE" misc_feature complement(3905702..3907465) /gene="yicP" /locus_tag="SF3796" /note="cryptic adenine deaminase; Provisional; Region: PRK10027" /db_xref="CDD:182201" misc_feature complement(order(3906614..3906616,3906761..3906763, 3906824..3906826,3907190..3907192,3907196..3907198)) /gene="yicP" /locus_tag="SF3796" /note="active site" /db_xref="CDD:238620" gene 3907562..3908974 /gene="yicO" /locus_tag="SF3797" /db_xref="GeneID:1026071" CDS 3907562..3908974 /gene="yicO" /locus_tag="SF3797" /note="Code: R; COG: COG2252" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709530.1" /db_xref="GeneID:1026071" /translation="MIIITEPLLSFVLQKQGIKSPPMDKKMNNDNTDYVSNESGTLSR LFKLPQHGTTVRTELIAGMTTFLTMVYIVFVNPQILGAAQMDPKVVFVTTCLIAGIGS IAMGIFANLPVALAPAMGLNAFFAFVVVGAMGISWQTGMGAIFWGAIGLFLLTLFRIR YWMISNIPLSLRIGITSGIGLFIALMGLKNTGVIVANKDTLVMIGDLSSHGVLLGILG FFIITVLSSRHFHAAVLVSIVVTSCCGLFFGDVHFSGVYSIPPDISGVIGEVDLSGAL TLELAGIIFSFMLINLFDSSGTLIGVTDKAGLIDSNGKFPNMNKALYVDSVSSVAGAF IGTSSVTAYIESTSGVAVGGRTGLTAVVVGVMFLLVMFFSPLVAMVPPYATAGALIFV GVLMTSSLARVNWDDFTESVPAFITTVMMPFTFSITEGIALGFMSYCIMKVCTGRWRD LNLCVVVVAALFALKIILVD" misc_feature 3907676..3908965 /gene="yicO" /locus_tag="SF3797" /note="Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 (NCS2) family [Nucleotide transport and metabolism]; Region: NCS2; COG2252" /db_xref="CDD:441853" gene 3909000..3909479 /gene="yicN" /locus_tag="SF3798" /db_xref="GeneID:1026077" CDS 3909000..3909479 /gene="yicN" /locus_tag="SF3798" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709531.1" /db_xref="GeneID:1026077" /translation="MSSDYAGELMIWIMLATLAVVFVVGFRVLTSGARKAIRRLSDRL NIDVVPVESMVDQMGKSAGDEFLRYLHRPDESHLQNAAQVLLIWQIVIVDDSEQNLLQ WHRILQKARLSAPITDAQVRLALGFLRETEPEMQDINAFQMRYNAFFQPAEGVHWLH" misc_feature 3909027..3909452 /gene="yicN" /locus_tag="SF3798" /note="Protein of unknown function (DUF1198); Region: DUF1198; pfam06711" /db_xref="CDD:429081" gene 3909525..3910880 /gene="yicM" /locus_tag="SF3799" /db_xref="GeneID:1026064" CDS 3909525..3910880 /gene="yicM" /locus_tag="SF3799" /note="Code: G; COG: COG2814" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709532.3" /db_xref="GeneID:1026064" /translation="MDKTFTPHPVIFALFRFDLNSSSSNTVKVAKTLNSSHISMLKWS AFPLKHATGNTMSEFIAENRGADAITRPNWSAVFSVAFCVACLIIVEFLPVSLLTPMA QDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA NSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPL GSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEPSHQKQNTFRLLQRPGVMAG MIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFIGTSLSSFILKRS VKLALAGAPLILAVSALVLTLWGSDKIVATGVAIIWGLTFALVPVGWSTWITRSLADQ AEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALLVTAKVKMKK S" misc_feature 3909690..3910871 /gene="yicM" /locus_tag="SF3799" /note="purine ribonucleoside efflux pump NepI; Region: nepI; PRK10213" /db_xref="CDD:182309" gene complement(3910921..3911214) /locus_tag="SF3800" /db_xref="GeneID:1026070" CDS complement(3910921..3911214) /locus_tag="SF3800" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709533.1" /db_xref="GeneID:1026070" /translation="MKPTTLLLIFTFFAMPGIVYAESPFSSLQSAKEKTTVLQDLRKI CTPHASLSDEAWEKLMLSDENNKQHIREAIVAMERNNQSNYWEALGKVECPDM" misc_feature complement(3910924..3911211) /locus_tag="SF3800" /note="YicS family protein; Region: YicS_fam; NF041639" /db_xref="CDD:469522" mobile_element 3911405..3912668 /mobile_element_type="insertion sequence:IS600" gene 3911469..3911771 /locus_tag="SF3801" /db_xref="GeneID:1026083" CDS 3911469..3911771 /locus_tag="SF3801" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_709534.1" /db_xref="GeneID:1026083" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTLAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature 3911469..3911741 /locus_tag="SF3801" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 3911807..3912625 /locus_tag="SF3802" /db_xref="GeneID:1026079" CDS 3911807..3912625 /locus_tag="SF3802" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_709535.1" /db_xref="GeneID:1026079" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKPEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLNQ TFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFM ALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <3911807..3912598 /locus_tag="SF3802" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(3913710..3914699) /locus_tag="SF3804" /db_xref="GeneID:1026095" CDS complement(3913710..3914699) /locus_tag="SF3804" /codon_start=1 /transl_table=11 /product="serine protease-like protein" /protein_id="NP_709537.1" /db_xref="GeneID:1026095" /translation="MMIYKNDKTFRNLEIFGDSGSGAYLYDNKLEKWVLVGTTHGIAS VNGDQLTWITKYNDKLVSELKDTYSHKINLNGNNVTIKNTDITLHQNNADTTGTQEKI TKDKDIVFTNGGNVLFKDNLDFGSGGIIFDEGHEYNINGQRFTFKGAGIDIGKESIVN WNALYSSDDVLHKIGPGTLNVQKKQGANIKIGEGNVILNEEGTFNNIYLASGNGKVIL NKDNSLGNDQYAGIFFTKRGGTLDLNGHNQTFTRIAATDDGTTITNSDTKKEAVLAIN NEDSYIYHGNINGNIKLTHNINSQDKKTNAKLILDGSVNTKNDVEVSNASLTM" misc_feature complement(<3913794..>3914666) /locus_tag="SF3804" /note="Immunoglobulin A1 protease; Region: Peptidase_S6; pfam02395" /db_xref="CDD:396804" mobile_element 3914710..3916040 /mobile_element_type="insertion sequence:IS2" gene 3914756..3915166 /locus_tag="SF3805" /db_xref="GeneID:1026076" CDS 3914756..3915166 /locus_tag="SF3805" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_709538.3" /db_xref="GeneID:1026076" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 3914801..3915163 /locus_tag="SF3805" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 3915124..3916029 /locus_tag="SF3806" /db_xref="GeneID:1026085" CDS 3915124..3916029 /locus_tag="SF3806" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_709539.1" /db_xref="GeneID:1026085" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRIQAELDGMPAINAERVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFSNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature 3915124..3916026 /locus_tag="SF3806" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(3916795..3917367) /gene="lpfA" /locus_tag="SF3807" /db_xref="GeneID:1026078" CDS complement(3916795..3917367) /gene="lpfA" /locus_tag="SF3807" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_709540.1" /db_xref="GeneID:1026078" /translation="MKRNIIGGAFTLASLMLAGHALAEDGVVNFVGEIVDTTCEVTSD TADQIVPLGKVSKNAFSGVGSLASPQKFSIKLENCPATYTQAAVRFDGTEAPGGDGDL KVGTPLTAGNPGDFTGTGQAIAATGVGIRIFNQSDNSQVKLYNDSAYTAIDAEGKAEM KFIARYVATNATVTAGTANADSQFTVEYKK" misc_feature complement(3916798..3917367) /gene="lpfA" /locus_tag="SF3807" /note="fimbrial protein; Provisional; Region: lpfA; PRK15289" /db_xref="CDD:185189" mobile_element complement(3917645..3919072) /mobile_element_type="insertion sequence:IS4" gene complement(3917659..3919005) /locus_tag="SF3808" /db_xref="GeneID:1026092" CDS complement(3917659..3919005) /locus_tag="SF3808" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_709541.1" /db_xref="GeneID:1026092" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKISENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR LTLRSKKPELVKQELWGVLLAYNLVRYQMIKMAEHLKGYCPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature complement(3917917..3918915) /locus_tag="SF3808" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene complement(3919108..3920937) /gene="glmS" /locus_tag="SF3809" /db_xref="GeneID:1026074" CDS complement(3919108..3920937) /gene="glmS" /locus_tag="SF3809" /note="Code: M; COG: COG0449" /codon_start=1 /transl_table=11 /product="glucosamine--fructose-6-phosphate aminotransferase" /protein_id="NP_709542.1" /db_xref="GeneID:1026074" /translation="MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMT RLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIVVVHNGII ENHEPLREELKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV IMDSRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRR SVNIFDKTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQ VDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYR KSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMT NAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLS QDKRIEALAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPL ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSSDNMHIIEMP HVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE" misc_feature complement(3919111..3920937) /gene="glmS" /locus_tag="SF3809" /note="Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]; Region: GlmS; COG0449" /db_xref="CDD:440218" gene complement(3921099..3922469) /gene="glmU" /locus_tag="SF3810" /db_xref="GeneID:1026316" CDS complement(3921099..3922469) /gene="glmU" /locus_tag="SF3810" /note="Code: M; COG: COG1207" /codon_start=1 /transl_table=11 /product="bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase" /protein_id="NP_709543.1" /db_xref="GeneID:1026316" /translation="MLNNAMSVVILAAGKGTRMYSDLPKVLHTLAGKAMVQHVIDAAN ELGAAHVHLVYGHGGDLLKQALKDDNLNWVLQAEQLGTGHAMQQAAPFFADDEDILML YGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPTGYGRITRENGKVTGIVEHKDATD EQRQIQEINTGILIANGADMKRWLAKLTNNNAQGEYYITDIIALAYQEGREIVAVHPQ RLSEVEGVNNRLQLSRLERVYQSEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDT NVIIEGNVTLGHRVKIGTGCVIKNSVIGDDCEISPYTVVEDANLAAACTIGPFARLRP GAELLEGAHVGNFVEMKKARLGKGTKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANK FKTIIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVGENALAISRVPQTQKEGWR RPVKKK" misc_feature complement(3921102..3922469) /gene="glmU" /locus_tag="SF3810" /note="bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU; Region: glmU; PRK09451" /db_xref="CDD:181867" gene complement(3922820..3923233) /gene="atpC" /locus_tag="SF3811" /db_xref="GeneID:1026069" CDS complement(3922820..3923233) /gene="atpC" /locus_tag="SF3811" /note="Code: C; COG: COG0355" /codon_start=1 /transl_table=11 /product="ATP synthase F0F1 subunit epsilon" /protein_id="NP_709544.2" /db_xref="GeneID:1026069" /translation="MTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAI KPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEE HISSSHGDVDYAQASAELAKAIAQLRVIELTKKAM" misc_feature complement(3922832..3923233) /gene="atpC" /locus_tag="SF3811" /note="F0F1 ATP synthase subunit epsilon; Validated; Region: atpC; PRK00571" /db_xref="CDD:234796" gene complement(3923260..3924642) /gene="atpD" /locus_tag="SF3812" /db_xref="GeneID:1026060" CDS complement(3923260..3924642) /gene="atpD" /locus_tag="SF3812" /note="Code: C; COG: COG0055" /codon_start=1 /transl_table=11 /product="ATP synthase F0F1 subunit beta" /protein_id="NP_709545.1" /db_xref="GeneID:1026060" /translation="MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNERLVLEVQ QQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEI GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRL RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM GVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPA VDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVA RARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSI EEAVEKAKKL" misc_feature complement(3923263..3924642) /gene="atpD" /locus_tag="SF3812" /note="FoF1-type ATP synthase, beta subunit [Energy production and conversion]; Region: AtpD; COG0055" /db_xref="CDD:439825" gene complement(3924669..3925532) /gene="atpG" /locus_tag="SF3813" /db_xref="GeneID:1026049" CDS complement(3924669..3925532) /gene="atpG" /locus_tag="SF3813" /note="Code: C; COG: COG0224" /codon_start=1 /transl_table=11 /product="ATP synthase F0F1 subunit gamma" /protein_id="NP_709546.1" /db_xref="GeneID:1026049" /translation="MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRP YAETMRKVIGHLAHGNLEYKHPYLEDRDVKRVGYLVVSTDRGLCGGLNINLFKKLLAE MKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY DEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDDDLKHKSWDYLYEPDPKALLDT LLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQE LTEIVSGAAAV" misc_feature complement(3924672..3925532) /gene="atpG" /locus_tag="SF3813" /note="F0F1 ATP synthase subunit gamma; Validated; Region: PRK05621" /db_xref="CDD:235535" misc_feature complement(order(3924681..3924698,3924702..3924704, 3924711..3924716,3924723..3924728,3924732..3924737, 3924744..3924746,3924762..3924764,3924771..3924776, 3924783..3924785,3925149..3925151,3925158..3925163, 3925170..3925175,3925263..3925274,3925278..3925280, 3925440..3925445,3925452..3925457,3925461..3925466, 3925473..3925475,3925485..3925487,3925503..3925505, 3925518..3925520)) /gene="atpG" /locus_tag="SF3813" /note="core domain interface [polypeptide binding]; other site" /db_xref="CDD:213394" misc_feature complement(order(3924867..3924869,3924876..3924881, 3924888..3924890,3925377..3925382,3925389..3925391, 3925398..3925403,3925407..3925412)) /gene="atpG" /locus_tag="SF3813" /note="delta subunit interface [polypeptide binding]; other site" /db_xref="CDD:213394" misc_feature complement(order(3924867..3924872,3924879..3924881, 3925116..3925133,3925164..3925166)) /gene="atpG" /locus_tag="SF3813" /note="epsilon subunit interface [polypeptide binding]; other site" /db_xref="CDD:213394" gene complement(3925583..3927124) /gene="atpA" /locus_tag="SF3814" /db_xref="GeneID:1026051" CDS complement(3925583..3927124) /gene="atpA" /locus_tag="SF3814" /note="Code: C; COG: COG0056" /codon_start=1 /transl_table=11 /product="ATP synthase F0F1 subunit alpha" /protein_id="NP_709547.1" /db_xref="GeneID:1026051" /translation="MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGL ADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG LLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSMIPIG RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLL LRRPPGREAFPGDVFYLHSRLLERAARVNAEYVEAFTKGEVKGKTGSLTALPIIETQA GDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGG IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFA AERGYLADVELSKIGSFEAALLAYVDRDHAPLMQEINQTGGYNDEIEGKLKGILDSFK ATQSW" misc_feature complement(3925595..3927124) /gene="atpA" /locus_tag="SF3814" /note="F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281" /db_xref="CDD:236448" gene complement(3927137..3927670) /gene="atpH" /locus_tag="SF3815" /db_xref="GeneID:1026901" CDS complement(3927137..3927670) /gene="atpH" /locus_tag="SF3815" /note="Code: C; COG: COG0712" /codon_start=1 /transl_table=11 /product="ATP synthase F0F1 subunit delta" /protein_id="NP_709548.1" /db_xref="GeneID:1026901" /translation="MSEFITVARPYAKAAFDFAVEHQSVERWQDMLTFAAEVTKNEQM AELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAV SEATAEVDVISAAALSEQQLAKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRSGDMVI DGSVRGRLERLADVLQS" misc_feature complement(3927140..3927670) /gene="atpH" /locus_tag="SF3815" /note="F0F1 ATP synthase subunit delta; Validated; Region: PRK05758" /db_xref="CDD:235593" gene complement(3927685..3928155) /gene="atpF" /locus_tag="SF3816" /db_xref="GeneID:1026047" CDS complement(3927685..3928155) /gene="atpF" /locus_tag="SF3816" /note="Code: C; COG: COG0711" /codon_start=1 /transl_table=11 /product="ATP synthase F0F1 subunit B" /protein_id="NP_709549.1" /db_xref="GeneID:1026047" /translation="MNLNATILGQAIAFVLFVLFCMKYVWPPLMAAIEKRQKEIADGL ASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIV AQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL" misc_feature complement(3927688..3928155) /gene="atpF" /locus_tag="SF3816" /note="F0F1 ATP synthase subunit B; Validated; Region: PRK05759" /db_xref="CDD:180240" gene complement(3928217..3928456) /gene="atpE" /locus_tag="SF3817" /db_xref="GeneID:1026094" CDS complement(3928217..3928456) /gene="atpE" /locus_tag="SF3817" /note="Code: C; COG: COG0636" /codon_start=1 /transl_table=11 /product="ATP synthase F0F1 subunit C" /protein_id="NP_709550.1" /db_xref="GeneID:1026094" /translation="MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA" misc_feature complement(3928220..3928453) /gene="atpE" /locus_tag="SF3817" /note="F0F1 ATP synthase subunit C; Validated; Region: PRK06876" /db_xref="CDD:180739" gene complement(3928503..3929318) /gene="atpB" /locus_tag="SF3818" /db_xref="GeneID:1026101" CDS complement(3928503..3929318) /gene="atpB" /locus_tag="SF3818" /note="Code: C; COG: COG0356" /codon_start=1 /transl_table=11 /product="ATP synthase F0F1 subunit A" /protein_id="NP_709551.1" /db_xref="GeneID:1026101" /translation="MASENMTPQDYIGHHLNNLQLDLRTFSLVDPQNPPATFWTINID SMFFSVVLGLLFLVLFRSVAKKATSGVPGKFQTAIELVIGFVNGSVKDMYHGKSKLIA PLALTIFVWVFLMNLMDLLPIDLLPYIAEHVLGLPALRVVPSADVNVTLSMALGVFIL ILFYNIKMKGIGGFTKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG ELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH" misc_feature complement(3928506..3929207) /gene="atpB" /locus_tag="SF3818" /note="F0F1 ATP synthase subunit A; Validated; Region: PRK05815" /db_xref="CDD:235617" gene complement(3929327..3929719) /gene="atpI" /locus_tag="SF3819" /db_xref="GeneID:1026086" CDS complement(3929327..3929719) /gene="atpI" /locus_tag="SF3819" /codon_start=1 /transl_table=11 /product="membrane-bound ATP synthase" /protein_id="NP_709552.3" /db_xref="GeneID:1026086" /translation="MKNVMSVSLVSRNVARKLLLVQLLVVIASGLLFSLKDPFWGVSA ISGGLAVFLPNVLFMIFAWRHQAHTPAKGRVAWTFAFGEAFKVLAMLVLLVVALAVLK AVFLPLIVTWVLVLVVQILAPAVINNKG" misc_feature complement(3929336..3929707) /gene="atpI" /locus_tag="SF3819" /note="F0F1 ATP synthase subunit I; Validated; Region: PRK08049" /db_xref="CDD:181208" gene complement(3930324..3930947) /gene="gidB" /locus_tag="SF3820" /db_xref="GeneID:1026054" CDS complement(3930324..3930947) /gene="gidB" /locus_tag="SF3820" /note="Code: M; COG: COG0357" /codon_start=1 /transl_table=11 /product="16S rRNA methyltransferase GidB" /protein_id="NP_709553.1" /db_xref="GeneID:1026054" /translation="MLNKLSLLLKDAGISLTDHQKNQLIAYVNMLHKWNKAYNLTSVR DPNEMLVRHILDSIVVAPYLQGERFIDVGSGPGLPGIPLSIVRPEAHFTLLDSLGKRV RFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFASLNDMVSWCHHLPGEQGR FYALKGQMPEDEIALLPEEYQVESVVKLQVPALDGERHLVVIKANKI" misc_feature complement(3930339..3930947) /gene="gidB" /locus_tag="SF3820" /note="16S rRNA G527 N7-methylase RsmG (former glucose-inhibited division protein B) [Translation, ribosomal structure and biogenesis]; Region: RsmG; COG0357" /db_xref="CDD:440126" gene complement(3931011..3932900) /gene="gidA" /locus_tag="SF3821" /db_xref="GeneID:1026091" CDS complement(3931011..3932900) /gene="gidA" /locus_tag="SF3821" /note="Code: D; COG: COG0445" /codon_start=1 /transl_table=11 /product="tRNA uridine 5-carboxymethylaminomethyl modification protein GidA" /protein_id="NP_709554.1" /db_xref="GeneID:1026091" /translation="MFYPDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ MSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRV RYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD GKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQ HGDNPMPVFSFMGNASLHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRY CPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENA KIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAA RLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTE IGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREAS GEDLLRRPEMTYEKLTTLTPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNE NTLLPATLDYRQISGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM LRRSA" misc_feature complement(3931017..3932900) /gene="gidA" /locus_tag="SF3821" /note="tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA [Translation, ribosomal structure and biogenesis]; Region: MnmG; COG0445" /db_xref="CDD:440214" gene complement(3933279..3933722) /gene="mioC" /locus_tag="SF3822" /db_xref="GeneID:1026042" CDS complement(3933279..3933722) /gene="mioC" /locus_tag="SF3822" /note="Code: C; COG: COG0716" /codon_start=1 /transl_table=11 /product="FMN-binding protein MioC" /protein_id="NP_709555.1" /db_xref="GeneID:1026042" /translation="MADITLISGSTLGGAEYVAEHLAEKLEEVGFTTETLHGPLLEDL SASGIWLVISSTHGAGDIPDNLSPFYEALQEQKPDLSAVRFGTIGIGSREYDTFCGAI DKLEAELKNSGAKQTGETLKINILDHDIPEDPAEEWLGSWINLLK" misc_feature complement(3933285..3933722) /gene="mioC" /locus_tag="SF3822" /note="FMN-binding protein MioC; Provisional; Region: PRK09004" /db_xref="CDD:181608" gene complement(3933812..3934270) /gene="asnC" /locus_tag="SF3823" /db_xref="GeneID:1026038" CDS complement(3933812..3934270) /gene="asnC" /locus_tag="SF3823" /note="Code: K; COG: COG1522" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator AsnC" /protein_id="NP_709556.1" /db_xref="GeneID:1026038" /translation="MENYLIDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVE KMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTT GHYSIFIKVMCRSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP" misc_feature complement(3933815..3934270) /gene="asnC" /locus_tag="SF3823" /note="DNA-binding transcriptional regulator AsnC; Provisional; Region: PRK11179" /db_xref="CDD:183019" gene 3934422..3935414 /gene="asnA" /locus_tag="SF3824" /db_xref="GeneID:1026039" CDS 3934422..3935414 /gene="asnA" /locus_tag="SF3824" /note="Code: E; COG: COG2502" /codon_start=1 /transl_table=11 /product="asparagine synthetase AsnA" /protein_id="NP_709557.1" /db_xref="GeneID:1026039" /translation="MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGT QDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPD EDRLSPLHSVYVDQWDWERVMGDGERQLSTLKSTVEAIWAGIKATEAAVNEEFGLAPF LPDQIHFVHSQELLSRYPDLDAKGRERAIAKDLGAVFLVGIGGKLSDGHRHDVRAPDY DDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIRVDADTLKHQLALTGDEDRLQL EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAAVRESVPSLL" misc_feature 3934422..3935411 /gene="asnA" /locus_tag="SF3824" /note="Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches...; Region: class_II_aaRS-like_core; cl00268" /db_xref="CDD:444800" misc_feature order(3934446..3934451,3934458..3934460,3934515..3934520, 3934587..3934589,3934593..3934595,3934599..3934601, 3934620..3934622,3934659..3934661,3934671..3934673, 3934710..3934712,3934722..3934727,3934731..3934733, 3935358..3935360,3935370..3935372,3935388..3935390) /gene="asnA" /locus_tag="SF3824" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238350" misc_feature order(3934641..3934643,3934650..3934652,3934719..3934721, 3934767..3934769,3934773..3934775,3934779..3934781, 3935124..3935126,3935163..3935165,3935172..3935174, 3935184..3935186,3935316..3935318) /gene="asnA" /locus_tag="SF3824" /note="active site" /db_xref="CDD:238350" gene complement(3935419..3936870) /gene="yieM" /locus_tag="SF3825" /db_xref="GeneID:1026037" CDS complement(3935419..3936870) /gene="yieM" /locus_tag="SF3825" /note="Code: S; COG: COG2425" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709558.1" /db_xref="GeneID:1026037" /translation="MLTLDTLNVMLAVSEEGLIEEMIIALLASPQLAVFFEKFPRLKA AITDDVPRWREALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILDLLHRL NSPWAEQARQLVDANSTITSALHTLFLQRWRLSLIVQATTLNQQLLEEEREQLLSEVQ ERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQFIVKYGEFLNEQPELKRLAEQ LGRSREAKSIPRNDAQMETFRTMVREPATVPEQVDGLQQSDDILRLLPPELAKLGITE LEYEFYRRLVEKQLLTYRLHGESWREKVFERPVVHKDYDEQPRGPFIVCVDTSGSMGG FNEQCAKAFCLALMRIALAENRRCYIMLFSTEIVRYELSGPQGIEQAIRFLSQQFRGG TDLASCFRAIMERLQSREWFDADAVVISDFIAQRLPDDVTSKVKELQRVHQHRFHAVA MSAHGKPGIMRIFDHIWRFDTGMRSRLLRRWRR" misc_feature complement(3935452..3936870) /gene="yieM" /locus_tag="SF3825" /note="ATPase RavA stimulator ViaA; Region: yieM; PRK10997" /db_xref="CDD:236815" misc_feature complement(order(3935608..3935610,3935692..3935694, 3935878..3935880,3935884..3935886,3935890..3935892)) /gene="yieM" /locus_tag="SF3825" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:238739" gene complement(3936864..3938384) /gene="yieN" /locus_tag="SF3826" /db_xref="GeneID:1026057" CDS complement(3936864..3938384) /gene="yieN" /locus_tag="SF3826" /note="Code: R; COG: COG0714" /codon_start=1 /transl_table=11 /product="2-component regulator" /protein_id="NP_709559.3" /db_xref="GeneID:1026057" /translation="MTKGRHFIMAHPHLLAERISRLSSSLEKGLYERSHAIRLCLLAA LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDE GRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVA ASNELPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDE EYERWQKEIGEITLPDHVFELIFILRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG RSAVAPVDLILLKDCLWYDAQSLNLIQQQIDVLMTGHAWQQQGMLTRLGAIVQRHLQL QQQQSDKTALTLIRLGGIFSRRQQYQLPVNVTASTLTLLLQKPLKLHDMEVVHISFER SALEQWLSKGGEIRGKLNGIGFAQKLNLEVDSTQHLVVRDVSLQGSTLALPGSSAEGL PGEIKQQLEELESDWRKQHALFSEQQKCLFIPGDWLGRIEDSLQDVGAQIRQAQQC" misc_feature complement(3936867..3938360) /gene="yieN" /locus_tag="SF3826" /note="regulatory ATPase RavA; Provisional; Region: PRK13531" /db_xref="CDD:184118" mobile_element 3938449..3939876 /mobile_element_type="insertion sequence:IS4" gene 3938516..3939862 /locus_tag="SF3827" /db_xref="GeneID:1026043" CDS 3938516..3939862 /locus_tag="SF3827" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_709560.1" /db_xref="GeneID:1026043" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMALERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSHRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature 3938606..3939604 /locus_tag="SF3827" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene 3940020..3941888 /gene="trkD" /locus_tag="SF3828" /db_xref="GeneID:1026053" CDS 3940020..3941888 /gene="trkD" /locus_tag="SF3828" /note="Code: P; COG: COG3158" /codon_start=1 /transl_table=11 /product="potassium transport protein Kup" /protein_id="NP_709561.1" /db_xref="GeneID:1026053" /translation="MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGV ERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSML VIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH GTAMVGKLFAPIMLTWFLILAGLGLRSIIANPEVLHALNPMWAVHFFLEYKTVSFIAL GAVVLSITGGEVLYADMGHFGKFSIRLAWFTVVLPSLTLNYFGQGALLLKNPEAIKNP FFLLAPDWALIPLLIIAALATVIASQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMES GQIYIPFVNWMLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARQNWHW NKYFVALILIAFLCVDIPLFTANLDKLLSGGWLPLSLGTVMFIVMTTWKSERFRLLRR MHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRAINVIPFALMHNLKHNKVLHERVILL TLRTEDAPYVHNVRRVQIEQLSPTFWRVVASYGWRETPNVEEVFHRCGLEGLSCRMME TSFFMSHESLILGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI" misc_feature 3940020..3941885 /gene="trkD" /locus_tag="SF3828" /note="low affinity potassium transporter Kup; Region: trkD; PRK10745" /db_xref="CDD:182693" gene 3942055..3942474 /gene="rbsD" /locus_tag="SF3829" /db_xref="GeneID:1024132" CDS 3942055..3942474 /gene="rbsD" /locus_tag="SF3829" /note="Code: G; COG: COG1869" /codon_start=1 /transl_table=11 /product="D-ribose pyranase" /protein_id="NP_709562.2" /db_xref="GeneID:1024132" /translation="MKKGTVLNSDISSVISRLGHTDTLVVCDAGLPIPKSTTRIDMAL TQGVPSFMQVLGVVTNEMQVEAAIIAEEIKQHNPQLHETLLTHLEQLQKHQGNTIEIR YTTHEQFKQQTAESQAVIRSGECSPYANIILCAGVTF" misc_feature 3942055..3942471 /gene="rbsD" /locus_tag="SF3829" /note="D-ribose pyranase; Provisional; Region: PRK11797" /db_xref="CDD:183318" misc_feature 3942482..3944763 /note="Similar to Escherichia coli K12 ATP-binding component of D-ribose high-affinity transport system gi: 1790190 (502 aa). BLAST with identity of 98% in 761 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element 3942834..3943601 /mobile_element_type="insertion sequence:IS1" gene 3942889..3943164 /gene="insA" /locus_tag="SF3831" /db_xref="GeneID:1026059" CDS 3942889..3943164 /gene="insA" /locus_tag="SF3831" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709563.1" /db_xref="GeneID:1026059" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 3942910..>3943161 /gene="insA" /locus_tag="SF3831" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 3943191..3943586 /gene="insB" /locus_tag="SF3832" /db_xref="GeneID:1026066" CDS 3943191..3943586 /gene="insB" /locus_tag="SF3832" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709564.1" /db_xref="GeneID:1026066" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 3943194..3943583 /gene="insB" /locus_tag="SF3832" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 3943610..3944763 /locus_tag="SF3832a" /pseudogene="unknown" /db_xref="GeneID:16608368" gene 3944768..3945733 /gene="rbsC" /locus_tag="SF3833" /db_xref="GeneID:1027576" CDS 3944768..3945733 /gene="rbsC" /locus_tag="SF3833" /note="Code: G; COG: COG1172" /codon_start=1 /transl_table=11 /product="ribose ABC transporter permease" /protein_id="NP_709565.1" /db_xref="GeneID:1027576" /translation="MITQTVSGRRYFTKAWLMEQKSLIALLVLIAIVSTLSPNFFTIN NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGIEVNALVAVA AALTLGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTNGSPVNTGFTENADL FGWFGIGRPLGVPTPVWIMGIVFLAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNK IKIIVYSLCGLLASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIV GTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ" misc_feature 3944774..3945730 /gene="rbsC" /locus_tag="SF3833" /note="ribose ABC transporter permease protein; Reviewed; Region: rbsC; PRK09512" /db_xref="CDD:181922" misc_feature 3945386..3945442 /gene="rbsC" /locus_tag="SF3833" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119321" gene 3945758..3946648 /gene="rbsB" /locus_tag="SF3834" /pseudo /db_xref="GeneID:1026072" misc_feature 3945758..3946648 /gene="rbsB" /locus_tag="SF3834" /note="Similar to Escherichia coli K12 D-ribose periplasmic binding protein gi: 1790192 (297 aa). BLAST with identity of 98% in 297 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 3946759..3947703 /gene="rbsK" /locus_tag="SF3835" /db_xref="GeneID:1026073" CDS 3946759..3947703 /gene="rbsK" /locus_tag="SF3835" /note="Code: G; COG: COG0524" /codon_start=1 /transl_table=11 /product="ribokinase" /protein_id="NP_709566.2" /db_xref="GeneID:1026073" /translation="MDIPNMQNAGSLVVLGSINADHILNLQSFPTPGETVTGNHYQVA FGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGV ALIFVNGEGENVIGIHAGANAALSPSLVEAQRERIANASALLMQLESPLESVMAAAKI AHQNKTIVALNPAPARELPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLH EKGIRTVLITLGSRGVWASVNGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPL PEAIRFAHAAAAIAVTRKGAQPSVPWREEIDAFLDRQR" misc_feature 3946783..3947697 /gene="rbsK" /locus_tag="SF3835" /note="ribokinase; Provisional; Region: PRK11142" /db_xref="CDD:236858" misc_feature order(3946813..3946815,3946819..3946821,3946894..3946902, 3946909..3946911,3947065..3947067,3947071..3947073, 3947101..3947103,3947107..3947109,3947200..3947202, 3947524..3947529,3947536..3947538,3947644..3947646) /gene="rbsK" /locus_tag="SF3835" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238579" misc_feature order(3946822..3946824,3946828..3946830,3946843..3946863, 3946900..3946902,3947062..3947064,3947068..3947076, 3947092..3947115,3947278..3947280) /gene="rbsK" /locus_tag="SF3835" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238579" misc_feature order(3947332..3947334,3947440..3947448,3947455..3947457, 3947494..3947496,3947512..3947514,3947521..3947523, 3947530..3947535,3947542..3947544,3947608..3947610, 3947617..3947622,3947629..3947631) /gene="rbsK" /locus_tag="SF3835" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238579" gene 3947716..3948699 /gene="rbsR" /locus_tag="SF3836" /db_xref="GeneID:1026019" CDS 3947716..3948699 /gene="rbsR" /locus_tag="SF3836" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="transcriptional repressor RbsR" /protein_id="NP_709567.2" /db_xref="GeneID:1026019" /translation="MKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAP SALARSLKLNQTHTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMN RNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLL GGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFE FNGGFDAMRQLLSHPLRPQAVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELA SFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQLTPILMERGSA" misc_feature 3947716..3948696 /gene="rbsR" /locus_tag="SF3836" /note="transcriptional repressor RbsR; Provisional; Region: PRK10423" /db_xref="CDD:182448" gene complement(3948665..3950068) /gene="yieO" /locus_tag="SF3837" /db_xref="GeneID:1026044" CDS complement(3948665..3950068) /gene="yieO" /locus_tag="SF3837" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709568.2" /db_xref="GeneID:1026044" /translation="MSGLPWIAAMAFFMQALDATILNTALPAIAHSLNRSPLAMQSAI ISYTLTVAMLIPVSGWLADRFGTRRIFTLAVSLFTLGSLACALSNSLPQLVVFRVIQG IGDAMMMPVARPALLRAYPRNELLPVLNFVAMPGLVGPILGPVLGGVLVTWATWHWIF LINIPIGIAGLLYARKHMPNFTTARRRFDITGFLLFGLSLVLFSSGIELFGEKIVASW IALTVIVTSIGLLLLYILHARRTPNPLISLDLFKTRTFSIGIVGNIATRLGTGCVPFL MPLMLQVGFGYQAFIAGCMMAPTALGSIIAKSMVTQVLRRLGYRHTLVGITVIIGLMI AQFSLQSPAMAIWMLILPLFILGMAMSTQFTAMNTITLADLTDDNASSGNSVLAVTQQ LSISLGVAVSAAVLRIYEGMEGTTTVEQFHYTFITMGIITVASAAMFMLLKTTDGNNL IKRQRKSMPNRVPSESE" misc_feature complement(3948698..3950053) /gene="yieO" /locus_tag="SF3837" /note="putative transporter; Provisional; Region: PRK10504" /db_xref="CDD:182502" gene complement(3950115..3950807) /gene="yieP" /locus_tag="SF3838" /db_xref="GeneID:1026041" CDS complement(3950115..3950807) /gene="yieP" /locus_tag="SF3838" /note="Code: K; COG: COG2186" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709569.3" /db_xref="GeneID:1026041" /translation="MPLSAQQLAAQKNLSYVLAEKLAQRILKGEYEPGTILPGEIELG EQFGVSRTAVREAVKTLTAKGMVLPRPRIGTRVMPQSNWNFLDQELLTWWITEENFHQ VIDHFLVMRICLEPQACLLAATVGTAEQKAHLNTLMAEMAALKENFRRERWIEVDMAW HEHIYEMSANPFLTSFASLFHSVYHTYFTSITSDTVIKLDLHQAIVDAIIQSDGDAAF KACQALLRSPDK" misc_feature complement(3950127..3950783) /gene="yieP" /locus_tag="SF3838" /note="DNA-binding transcriptional regulator, FadR family [Transcription]; Region: FadR; COG2186" /db_xref="CDD:441789" gene 3951290..3952831 /gene="rrsC" /locus_tag="SF4519" /db_xref="GeneID:1025997" rRNA 3951290..3952831 /gene="rrsC" /locus_tag="SF4519" /product="16S ribosomal RNA" /db_xref="GeneID:1025997" gene 3952917..3952992 /locus_tag="SF4564" /db_xref="GeneID:3161781" tRNA 3952917..3952992 /locus_tag="SF4564" /product="tRNA-Glu" /codon_recognized="GAA" /db_xref="GeneID:3161781" gene 3953186..3956089 /gene="rrlC" /locus_tag="SF4521" /db_xref="GeneID:1026048" rRNA 3953186..3956089 /gene="rrlC" /locus_tag="SF4521" /product="23S ribosomal RNA" /db_xref="GeneID:1026048" gene 3956184..3956302 /gene="rrfC" /locus_tag="SF4522" /db_xref="GeneID:1026015" rRNA 3956184..3956302 /gene="rrfC" /locus_tag="SF4522" /product="5S ribosomal RNA" /db_xref="GeneID:1026015" gene 3956355..3956431 /locus_tag="SF4523" /db_xref="GeneID:3161806" tRNA 3956355..3956431 /locus_tag="SF4523" /product="tRNA-Asp" /codon_recognized="GAC" /db_xref="GeneID:3161806" gene 3956440..3956515 /locus_tag="SF4524" /db_xref="GeneID:3161764" tRNA 3956440..3956515 /locus_tag="SF4524" /product="tRNA-Trp" /codon_recognized="UGG" /db_xref="GeneID:3161764" gene complement(3956611..3957450) /gene="yifA" /locus_tag="SF3839" /db_xref="GeneID:1026050" CDS complement(3956611..3957450) /gene="yifA" /locus_tag="SF3839" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="transcriptional regulator HdfR" /protein_id="NP_709570.1" /db_xref="GeneID:1026050" /translation="MDTELLKTFLEVSRTRHFGRAAESLYLTQSAVSFRIRQLENQLG VNLFTRHRNNIRLTAAGEKLLPYAETLMSTWQAARKEVAHTSRHNEFSIGASASLWEC MLNQWLGRLYQNQDAHTGLQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEFSSQL LGYFTLALYTSAPSKLKGDLNYLRLEWGPDFQQHEAGLIGADEVPILTTSSAELAQQQ IAMLNGCTWLPVSWARKKGGLHTVVDSTTLSRPLYAIWLQNSDKNALIRDLLKINVLD EVY" misc_feature complement(3956620..3957450) /gene="yifA" /locus_tag="SF3839" /note="HTH-type transcriptional regulator HdfR; Region: PRK03601" /db_xref="CDD:235137" gene 3957569..3957907 /gene="yifE" /locus_tag="SF3840" /db_xref="GeneID:1026009" CDS 3957569..3957907 /gene="yifE" /locus_tag="SF3840" /note="Code: S; COG: COG3085" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709571.1" /db_xref="GeneID:1026009" /translation="MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGYAFNE LDLGKREPVTEEEKLFVAVCRGEREPVTEAERVWSKYMTRIKRPKRFHTLSGGKPQVE GAEDYTDSDD" misc_feature 3957569..3957904 /gene="yifE" /locus_tag="SF3840" /note="hypothetical protein; Provisional; Region: PRK11027" /db_xref="CDD:236825" gene complement(3957932..3959441) /gene="yifB" /locus_tag="SF3841" /pseudo /db_xref="GeneID:1026018" misc_feature complement(3957932..3959441) /gene="yifB" /locus_tag="SF3841" /note="Similar to Escherichia coli K12 2-component regulator gi: 1790201 (517 aa). BLAST with identity of 97% in 503 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 3959763..3959861 /gene="ilvL" /locus_tag="SF3842" /db_xref="GeneID:1026026" CDS 3959763..3959861 /gene="ilvL" /locus_tag="SF3842" /codon_start=1 /transl_table=11 /product="ilvG operon leader peptide" /protein_id="NP_709572.1" /db_xref="GeneID:1026026" /translation="MTALLRVISLVVISVVVIIIPPCGAALGRGKA" misc_feature 3959763..3959858 /gene="ilvL" /locus_tag="SF3842" /note="ilv operon leader peptide; Region: PRK10424" /db_xref="CDD:170429" gene 3960000..3961646 /gene="ilvG" /locus_tag="SF3843" /db_xref="GeneID:1026001" CDS 3960000..3961646 /gene="ilvG" /locus_tag="SF3843" /note="Code: EH; COG: COG0028" /codon_start=1 /transl_table=11 /product="acetolactate synthase 2 catalytic subunit" /protein_id="NP_709573.1" /db_xref="GeneID:1026001" /translation="MNGAQWVVHALRAQGVNTVFGYPGGAIMPVYDALYDGGVEHLLC RHEQGAAMAAIGYARATGKTGVCIATSGPGATNLITGLADALLDSIPVVAITGQVSAP FIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMAEAFDVASSGRPGPVLVDIPKD IQLASGDLEPWFTTVENEVTFPHAEVEQARQMLAKAQKPMLYVGGGVGMAQAVPALRE FLAATKMPATCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDR VTGKLNTFAPHASVIHMDIDPAEMNKLRQAHVALQGDLNALLPALQQPLNINDWQQHC AQLRDEHSWRYDHPGDAIYAPLLLKQLSDRKPADCVVTTDVGQHQMWAAQHIAHTRPE NFITSSGLGTMGFGLPAAVGAQVARPNDTVVCISGDGSFMMNVQELGTVKRKQLPLKI VLLDNQRLGMVRQWQQLFFQERYSETTLTDNPDFLMLASAFGIPGQHITRKDQVEAAL DTMLNSDGPYLLHVSIDELENVWPLVPPGASNSEMLEKLS" misc_feature 3960000..3961643 /gene="ilvG" /locus_tag="SF3843" /note="acetolactate synthase 2 catalytic subunit; Reviewed; Region: PRK08978" /db_xref="CDD:181601" gene 3961646..3961906 /gene="ilvM" /locus_tag="SF3844" /db_xref="GeneID:1025509" CDS 3961646..3961906 /gene="ilvM" /locus_tag="SF3844" /note="Code: E; COG: COG0440" /codon_start=1 /transl_table=11 /product="acetolactate synthase 2 regulatory subunit" /protein_id="NP_709574.2" /db_xref="GeneID:1025509" /translation="MQHQVNVSARFNPETLERVLRVVRHRGFHVCSMNMAAASDAQNI NIELTVASPRSVDLLFSQLNKLVDVAHVAICQSTTTSQQIRA" misc_feature 3961646..3961870 /gene="ilvM" /locus_tag="SF3844" /note="acetolactate synthase 2 small subunit; Region: ilvM; PRK11152" /db_xref="CDD:236862" gene 3961926..3962855 /gene="ilvE" /locus_tag="SF3845" /db_xref="GeneID:1026008" CDS 3961926..3962855 /gene="ilvE" /locus_tag="SF3845" /note="Code: EH; COG: COG0115" /codon_start=1 /transl_table=11 /product="branched-chain amino acid aminotransferase" /protein_id="NP_709575.1" /db_xref="GeneID:1026008" /translation="MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYD SHKGPVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLIF VGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAK AGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSAL PGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQIGEG RCGPVTKRIQQAFFGLFTGETEDKWGWLDQVNQ" misc_feature 3961926..3962846 /gene="ilvE" /locus_tag="SF3845" /note="branched-chain amino acid transaminase; Region: PRK06606" /db_xref="CDD:235841" misc_feature order(3961989..3962003,3962010..3962024,3962028..3962030, 3962034..3962036,3962124..3962126,3962217..3962219, 3962223..3962225,3962241..3962249,3962259..3962261, 3962286..3962288,3962409..3962411,3962424..3962426, 3962430..3962432,3962442..3962444,3962484..3962486) /gene="ilvE" /locus_tag="SF3845" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:238798" misc_feature order(3962019..3962021,3962034..3962036,3962103..3962105, 3962253..3962255,3962403..3962405,3962418..3962420, 3962505..3962507,3962586..3962591,3962697..3962699) /gene="ilvE" /locus_tag="SF3845" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:238798" misc_feature 3962403..3962405 /gene="ilvE" /locus_tag="SF3845" /note="catalytic residue [active]" /db_xref="CDD:238798" gene 3962920..3964770 /gene="ilvD" /locus_tag="SF3846" /db_xref="GeneID:1026062" CDS 3962920..3964770 /gene="ilvD" /locus_tag="SF3846" /note="Code: EG; COG: COG0129" /codon_start=1 /transl_table=11 /product="dihydroxy-acid dehydratase" /protein_id="NP_709576.1" /db_xref="GeneID:1026062" /translation="MPKYRSATTTHGRNMAGARALWRATGMTDADFGKPIIAVVNSFT QFVPGHVHLRDLGKLVAEQIEAAGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD SVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDQII KLDLVDAMIQGADPKVSDSQSDQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN GSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMG GSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVIG ILGELDRAGLLNRDVKNVLGLTLPQTLEQYDVMLTQDDAVKNMFRAGPAGIRTTQAFS QDCRWDSLDDDRANGCIRSLEHAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTG PAKVYESQDDAVEAILGGKVVAGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKAC ALITDGRFSGGTSGLSIGHVSPEAASGGSIGLIEDGDLIAIDIPNRGIQLQVSDAELA ARREAQEARGDKAWTPKNRERQVSFALCAYASLATSADKGAVRDKSKLGG" misc_feature 3962923..3964767 /gene="ilvD" /locus_tag="SF3846" /note="dihydroxy-acid dehydratase; Provisional; Region: PRK12448" /db_xref="CDD:237104" gene 3964773..3966317 /gene="ilvA" /locus_tag="SF3847" /db_xref="GeneID:1025994" CDS 3964773..3966317 /gene="ilvA" /locus_tag="SF3847" /note="Code: E; COG: COG1171" /codon_start=1 /transl_table=11 /product="threonine dehydratase" /protein_id="NP_709577.1" /db_xref="GeneID:1025994" /translation="MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLG VKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHP MVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA CLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKD LFEDVRAVAEPSGALALAGMKKYIAQHNIRGERLAHILSGANVNFHGLRYVSERCELG EQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEER KEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRF LNTLGTHWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLNELGYDCHDETNNPAF RFFLAG" misc_feature 3964809..3966311 /gene="ilvA" /locus_tag="SF3847" /note="threonine ammonia-lyase IlvA; Region: PRK09224" /db_xref="CDD:236417" gene complement(3966314..3967204) /gene="ilvY" /locus_tag="SF3849" /db_xref="GeneID:1026027" CDS complement(3966314..3967204) /gene="ilvY" /locus_tag="SF3849" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator IlvY" /protein_id="NP_709578.2" /db_xref="GeneID:1026027" /translation="MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLG QPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQLRHTIDQQGPLLYGELHIFCSVTAA YSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSM LENLAVVLIAPALPCPVRNQVSVEKPDWSTVPFIMADQGPVRRRIELWFRRNKISNPM IYATVGGHEAMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCA QKKRLHEPLIEAFWKILPNH" misc_feature complement(3966317..3967132) /gene="ilvY" /locus_tag="SF3849" /note="HTH-type transcriptional activator IlvY; Region: PRK11716" /db_xref="CDD:236961" gene 3967354..3968829 /gene="ilvC" /locus_tag="SF3848" /db_xref="GeneID:1026032" CDS 3967354..3968829 /gene="ilvC" /locus_tag="SF3848" /note="Code: EH; COG: COG0059" /codon_start=1 /transl_table=11 /product="ketol-acid reductoisomerase" /protein_id="NP_709579.2" /db_xref="GeneID:1026032" /translation="MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVG CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLV VNLTPDKQHSDVVRTVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTE VREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDL MGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEKLIQFGWETITEALKQGGITLMMDR LSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREET GKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLH ELPLIANTIVRKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGKAIPE GAVDNAQLRDVNEAIRSHAIEQVGKKLRGYMTDMKRIAVAG" misc_feature 3967357..3968817 /gene="ilvC" /locus_tag="SF3848" /note="ketol-acid reductoisomerase; Validated; Region: PRK05225" /db_xref="CDD:235368" gene complement(3968875..3969156) /gene="ppiC" /locus_tag="SF3850" /db_xref="GeneID:1026011" CDS complement(3968875..3969156) /gene="ppiC" /locus_tag="SF3850" /note="Code: O; COG: COG0760" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase C" /protein_id="NP_709580.1" /db_xref="GeneID:1026011" /translation="MAKTAAALHILVKEEKLALDLLVQIKNGADFGKLAKKHSICPSG KRGGDLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRN" misc_feature complement(3968878..3969156) /gene="ppiC" /locus_tag="SF3850" /note="peptidyl-prolyl cis-trans isomerase C; Provisional; Region: PRK15441" /db_xref="CDD:185338" gene 3969243..3971264 /gene="rep" /locus_tag="SF3851" /db_xref="GeneID:1026005" CDS 3969243..3971264 /gene="rep" /locus_tag="SF3851" /note="Code: L; COG: COG0210" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase Rep" /protein_id="NP_709581.2" /db_xref="GeneID:1026005" /translation="MRLNPGQQQAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG YQARHIAAVTFTNKAAREMKERVGQTLGRKEAHGLMISTFHTLGLDIIKREYAALGMK ANFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQAAASAIGER DRIFAHCYGLYDAHLKACNVLDFDDLILLPTLLLQRNEEVRERWQNKIRYLLVDEYQD TNTSQYELVKLLVGSRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALKVIKLEQN YRSSGRILKAANILIANNPHVFEKRLFSELGYGTELKVLSANNEEHEAERVTGELIAH HFVNKTQYKDYAILYRGNYQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV LTNPDDDSAFLRIVNTPKREIGPATLKKLGEWAMTRNKSMFTASFDMGLSQTLSGRGY EALTRFTHWLAEIQRLAEREPIAAVRDLIHGMDYESWLYETSPSTKAAEMRMKNVNQL FSWMTEMLEGSELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFP YVYMVGMEEGFLPHQSSIDEDNIDEERRLAYVGITRAQKELTFTLCKERRQYGELVRP EPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRGK" misc_feature 3969243..3971258 /gene="rep" /locus_tag="SF3851" /note="ATP-dependent DNA helicase Rep; Provisional; Region: PRK10919" /db_xref="CDD:182838" gene complement(3971311..3972795) /gene="gppA" /locus_tag="SF3852" /db_xref="GeneID:1026029" CDS complement(3971311..3972795) /gene="gppA" /locus_tag="SF3852" /note="Code: FP; COG: COG0248" /codon_start=1 /transl_table=11 /product="guanosine pentaphosphate phosphohydrolase" /protein_id="NP_709582.2" /db_xref="GeneID:1026029" /translation="MGSTSSLYAAIDLGSNSFHMLVVREVAGSIQTLTRIKRKVRLAA GLNSENDLSNEAMERGWQCLRLFAERLQDIPPSQIRVVATATLRLAVNAGDFIAKAQE ILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSL SMGCVTWLERYFADRNLGQENFDAAEKAAREVLRPVADELRYHGWKVCVGASGTVQAL QEIMMAQGMDERITLEKLQQLKQRAIHCGRLEELEIDGLTLERALVFPSGLAILIAIF TELNIQCMTLAGGALREGLVYGMLHLAVEQDIRSRTLRNIQRRFMIDIDQAQRVAKVA ANFFDQVENEWHLEAISRDLLISACQLHEIGLSVDFKQAPQHAAYLVRNLDLPGFTPA QKKLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAIIFASRRRDDLVPEMT LQANHELLTLTLPQGWLTQHPLGKEIIAQENQWQSYVHWPLEVH" misc_feature complement(3971314..3972795) /gene="gppA" /locus_tag="SF3852" /note="guanosine-5'-triphosphate,3'-diphosphate diphosphatase; Region: PRK11031" /db_xref="CDD:236826" gene complement(3972929..3974194) /gene="rhlB" /locus_tag="SF3853" /db_xref="GeneID:1026017" CDS complement(3972929..3974194) /gene="rhlB" /locus_tag="SF3853" /note="Code: LKJ; COG: COG0513" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase RhlB" /protein_id="NP_709583.1" /db_xref="GeneID:1026017" /translation="MSKTHLTEQKFSDFALHPKVVEALEKKGFHNCTPIQALALPLTL AGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIADRKVNQPRALIMAPTRELAVQIHA DAEPLAEATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ VVVLDEADRMYDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEY IEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHL AADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP DDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIETYIGHSIPVSKYNPDALMTD LPKPLRLTRPRTGNGPRRTGAPRNRRRSG" misc_feature complement(3972935..3974191) /gene="rhlB" /locus_tag="SF3853" /note="ATP-dependent RNA helicase RhlB; Provisional; Region: PRK04837" /db_xref="CDD:235314" misc_feature complement(order(3974012..3974035,3974087..3974089, 3974096..3974104,3974108..3974113)) /gene="rhlB" /locus_tag="SF3853" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350669" gene 3974271..3974654 /gene="trxA" /locus_tag="SF3854" /db_xref="GeneID:1026010" CDS 3974271..3974654 /gene="trxA" /locus_tag="SF3854" /note="Code: OC; COG: COG0526" /codon_start=1 /transl_table=11 /product="thioredoxin" /protein_id="NP_709584.2" /db_xref="GeneID:1026010" /translation="MLHQQRNQHARLIPVELYMSDKIIHLTDDSFDTDVLKADGAILV DFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKN GEVAATKVGALSKGQLKEFLDANLA" misc_feature 3974325..3974651 /gene="trxA" /locus_tag="SF3854" /note="thioredoxin TrxA; Region: trxA; PRK09381" /db_xref="CDD:181812" misc_feature order(3974421..3974423,3974430..3974432) /gene="trxA" /locus_tag="SF3854" /note="catalytic residues [active]" /db_xref="CDD:239245" gene 3974795..3974896 /gene="rhoL" /locus_tag="SF3855" /db_xref="GeneID:1026016" CDS 3974795..3974896 /gene="rhoL" /locus_tag="SF3855" /codon_start=1 /transl_table=11 /product="rho operon leader peptide" /protein_id="NP_709585.1" /db_xref="GeneID:1026016" /translation="MRSEQISGSSLNPSCRFSSAYSPVTRQRKDMSR" misc_feature 3974795..3974893 /gene="rhoL" /locus_tag="SF3855" /note="rho operon leader peptide rhoL; Region: PRK09979" /db_xref="CDD:77522" gene 3974981..3976240 /gene="rho" /locus_tag="SF3856" /db_xref="GeneID:1025988" CDS 3974981..3976240 /gene="rho" /locus_tag="SF3856" /note="Code: K; COG: COG1158" /codon_start=1 /transl_table=11 /product="transcription termination factor Rho" /protein_id="NP_709586.2" /db_xref="GeneID:1025988" /translation="MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAK SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR PPKEGERYFALLKVNEVNFDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE IDAMEFLINKLAMTKTNDDFFEMMKRS" misc_feature 3974981..3976234 /gene="rho" /locus_tag="SF3856" /note="transcription termination factor Rho; Provisional; Region: rho; PRK09376" /db_xref="CDD:236490" gene 3976250..3976468 /locus_tag="SF3857" /db_xref="GeneID:1026040" CDS 3976250..3976468 /locus_tag="SF3857" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709587.1" /db_xref="GeneID:1026040" /translation="MPKTPRVYVAFCFYICNLNVALAMLGKFLEFAGMLCNLHIKWLI FAQGWWVRNGLSLLNKGLRGYTSANNFL" gene 3976480..3977583 /gene="rfe" /locus_tag="SF3858" /db_xref="GeneID:1026035" CDS 3976480..3977583 /gene="rfe" /locus_tag="SF3858" /note="Code: M; COG: COG0472" /codon_start=1 /transl_table=11 /product="undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase" /protein_id="NP_709588.1" /db_xref="GeneID:1026035" /translation="MNLLTVSTDLISIFLFTTLFLFFARKVAKKVGLVDKPNFRKRHQ GLIPLVGGISVYAGICFTFGIVDYYIPHASLYLACAGVLVFIGALDDRFDISVKIRAT IQAAVGIVMMVFGKLYLSSLGYIFGSWEMVLGPFGYFLTLFAVWAAINAFNMVDGIDG LLGGLSCVSFAAIGMILWFDGQTSLAIWCFAMIAAILPYIMLNLGILGRRYKVFMGDA GSTLIGFTVIWILLETTQGKTHPISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPD RQHIHHLIMRAGFTSRQAFVLITLAAALLASIGVLAEYSHFVPEWVMLVLFLLAFFLY GYCIKRAWKVARFIKRVKRRLRRNRGGSPNLTK" misc_feature 3976498..3977526 /gene="rfe" /locus_tag="SF3858" /note="undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; Region: ECA_wecA; TIGR02380" /db_xref="CDD:131433" gene 3977595..3978641 /gene="wzzE" /locus_tag="SF3859" /db_xref="GeneID:1026033" CDS 3977595..3978641 /gene="wzzE" /locus_tag="SF3859" /codon_start=1 /transl_table=11 /product="lipopolysaccharide biosynthesis protein WzzE" /protein_id="NP_709589.2" /db_xref="GeneID:1026033" /translation="MTQPMPGKPAEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIA LAYTFFARQEWSSTAITDRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYK EFVMQLASWDTRREFWLQTDYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDS VKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKA IYDRRMNSIEQALKIAEQHNISRSATDVPAEELPDSEMFLLGRPMLQARLENLQAVGP AFDLDYDQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGG LIGAGVALTRRCSK" misc_feature 3977616..3978638 /gene="wzzE" /locus_tag="SF3859" /note="ECA polysaccharide chain length modulation protein; Region: PRK11638" /db_xref="CDD:236943" gene 3978655..3979827 /gene="wecB" /locus_tag="SF3860" /db_xref="GeneID:1026025" CDS 3978655..3979827 /gene="wecB" /locus_tag="SF3860" /note="Code: M; COG: COG0381" /codon_start=1 /transl_table=11 /product="UDP-N-acetyl glucosamine-2-epimerase" /protein_id="NP_709590.1" /db_xref="GeneID:1026025" /translation="MSAKALAAYSKRIDVKVLTVFGTRPEAIKMAPLVHALAKDPFFE AKVCVTAQHREMLDQVLKLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILAEFKPD VVLVHGDTTTTLATSLAAFYQRIPVGHVEAGLRTGALYSPWPEEANRTLTGHLAMYHF SPTETSRQNLLRENVADSRIFITGNTVIDALLWVRDQVMSSDTLRSELAANYPFIAPD KKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHLNPNVREPVNRILGHV KNVILIDPQEYLPFVWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRDTTERPEAVTAG TVRLVGTDKQRIVEEVTRLLKDENEYQAMSRAHNPYGDGQACSRILEALKNNRISL" misc_feature 3978697..3979815 /gene="wecB" /locus_tag="SF3860" /note="UDP-N-acetylglucosamine 2-epimerase; Region: wecB; TIGR00236" /db_xref="CDD:272978" gene 3979824..3981086 /gene="wecC" /locus_tag="SF3861" /db_xref="GeneID:1026028" CDS 3979824..3981086 /gene="wecC" /locus_tag="SF3861" /note="Code: M; COG: COG0677" /codon_start=1 /transl_table=11 /product="UDP-N-acetyl-D-mannosamine dehydrogenase" /protein_id="NP_709591.1" /db_xref="GeneID:1026028" /translation="MSFATISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINR GEIHIVEPDLASVVKTAVEGGFLRASTTPVEADAWLIAVPTPFKGDHEPDMTYVESAA RSIAPVLKKGALVILESTSPVGSTEKMAEWLAEMRPDLTFPQQVGEQADVNIAYCPER VLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSF RDVNIAFANELSLICADQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVA QNPQQARLIRTAREVNDHKPFWVIDQVKAAVADCLAATDKRASELKIACFGLAFKPNI DDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLTGLCTLAQLDEALATADVLVM LVDHSQFKVINGDNVHQQYVVDAKGVWR" misc_feature 3979824..3981065 /gene="wecC" /locus_tag="SF3861" /note="UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional; Region: wecC; PRK11064" /db_xref="CDD:182940" gene 3981086..3982153 /gene="rffG" /locus_tag="SF3862" /db_xref="GeneID:1026904" CDS 3981086..3982153 /gene="rffG" /locus_tag="SF3862" /note="Code: M; COG: COG1088" /codon_start=1 /transl_table=11 /product="dTDP-glucose 4,6-dehydratase" /protein_id="NP_709592.1" /db_xref="GeneID:1026904" /translation="MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSL APVAQSERFAFEKVDICDRAELARVFTEHQPDCVMHLAAESHVDRSIDGPAAFIETNI VGTYTLLEAARAYWNTLTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY SASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYG NGQQIRDWLYVEDHARALYCVATTGKVGETYNIGGHNERKNLDVVETICELLEELASN KPHGVAYYRDLITFVADRPGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLAN ESWWKQVQDGSYQGERLGLKG" misc_feature 3981086..3982150 /gene="rffG" /locus_tag="SF3862" /note="dTDP-glucose 4,6-dehydratase; Provisional; Region: PRK10217" /db_xref="CDD:182313" gene 3982172..3983053 /gene="rffH" /locus_tag="SF3863" /db_xref="GeneID:1025982" CDS 3982172..3983053 /gene="rffH" /locus_tag="SF3863" /note="Code: M; COG: COG1209" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate thymidylyltransferase" /protein_id="NP_709593.1" /db_xref="GeneID:1025982" /translation="MKGIILAGGSGTRLHPITRGVSKQLLPIYDKPMIYYPLSVLMLA GIREILIITTPEDKGYFQRLLGDGSEFGIQLEYAEQPSPDGLAQAFIIGETFLNGEPS CLVLGDNIFFGQGFSPKLRHVAARTEGATVFGYQVMDPERFGVVEFDDNFRAISLEEK PKQPKSNWAVTGLYFYDSKVVEYAKQVKPSERGELEITSINQMYLEAGNLTVELLGRG FAWLDTGTHDSLIEASTFVQTVEKRQGFKIACLEEIAWRNGWLDDEGVKRAASSLAKT GYGQYLLELLRARPRQY" misc_feature 3982175..3983032 /gene="rffH" /locus_tag="SF3863" /note="glucose-1-phosphate thymidylyltransferase, short form; Region: rmlA; TIGR01207" /db_xref="CDD:130274" misc_feature order(3982187..3982189,3982193..3982198,3982409..3982411, 3982418..3982429,3982493..3982495,3982601..3982603, 3982646..3982651,3982679..3982681,3982763..3982765) /gene="rffH" /locus_tag="SF3863" /note="substrate binding site [active]" /db_xref="CDD:133019" misc_feature order(3982205..3982207,3982214..3982222,3982229..3982234, 3982244..3982252,3982256..3982267,3982274..3982276, 3982349..3982351,3982505..3982510,3982574..3982585, 3982595..3982600,3982832..3982840,3982850..3982855, 3982862..3982864,3982871..3982879,3982886..3982891) /gene="rffH" /locus_tag="SF3863" /note="tetramer interface [active]" /db_xref="CDD:133019" gene 3983160..3983705 /gene="wecD" /locus_tag="SF3864" /db_xref="GeneID:1025973" CDS 3983160..3983705 /gene="wecD" /locus_tag="SF3864" /codon_start=1 /transl_table=11 /product="TDP-fucosamine acetyltransferase" /protein_id="NP_709594.2" /db_xref="GeneID:1025973" /translation="MQAKIAASNTGELDALQQLGFSLVEGEVDLALPVNNVSDSGAVV AQETDIPALRQLASAAFAQSRFRAPWYAPDASGRFYAQWIENAVRGTFDHQCLILRAA SGDIRGYVSLRELNATDARIGLLAGRGAGAELMQTALNWAYARGKTTLRVATQMGNTA ALKRYIQSGANVESTAYWLYR" misc_feature 3983163..3983702 /gene="wecD" /locus_tag="SF3864" /note="TDP-D-fucosamine acetyltransferase; Region: wecD_rffC; TIGR02382" /db_xref="CDD:131435" gene 3983710..3984840 /gene="wecE" /locus_tag="SF3865" /db_xref="GeneID:1025974" CDS 3983710..3984840 /gene="wecE" /locus_tag="SF3865" /note="Code: M; COG: COG0399" /codon_start=1 /transl_table=11 /product="TDP-4-oxo-6-deoxy-D-glucose transaminase" /protein_id="NP_709595.1" /db_xref="GeneID:1025974" /translation="MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRF GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRP DTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST YKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFR GQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDTLAPLAKAGR IELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKEAEIMAVFHYIPLHGCPAGEHFG EFHGEDRYTTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS" misc_feature 3983710..3984837 /gene="wecE" /locus_tag="SF3865" /note="TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional; Region: PRK11706" /db_xref="CDD:183283" misc_feature order(3983872..3983877,3984163..3984165,3984172..3984174, 3984235..3984237,3984247..3984252,3984667..3984669) /gene="wecE" /locus_tag="SF3865" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99740" misc_feature order(3983872..3983877,3983947..3983949,3984163..3984165, 3984172..3984174,3984235..3984237,3984250..3984252) /gene="wecE" /locus_tag="SF3865" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99740" misc_feature 3984250..3984252 /gene="wecE" /locus_tag="SF3865" /note="catalytic residue [active]" /db_xref="CDD:99740" gene 3984842..3986092 /gene="wzxE" /locus_tag="SF3866" /db_xref="GeneID:1025971" CDS 3984842..3986092 /gene="wzxE" /locus_tag="SF3866" /note="Code: R; COG: COG2244" /codon_start=1 /transl_table=11 /product="O-antigen translocase" /protein_id="NP_709596.1" /db_xref="GeneID:1025971" /translation="MSLAKASLWTAASTLVKIGAGLLVGKLLAVSFGPAGLGLAANFR QLITVLGVLAGAGIFNGVTKYVAQYHDNPQQLRRVVGTSSAMVLGFSTLMALVFVLAA APISQGLFGNTDYQGLVRLVALVQMGIAWGNLLLALMKGFRDAAGNALSLIVGSLIGV LAYYVSYRLGGYEGALLGLALIPALVVIPAAIMLIKRGVIPLSYLKPSWDNGLAGQLS KFTLMALITSVTLPVAYIMMRKLLAAQYSWDEVGIWQGVSSISDAYLQFITASFSVYL LPTLSRLTEKRDITREVVKSLKFVLPAVAAASFTVWLLRDFAIWLLLSNKFTAMRDLF AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQFTLLMVFAHWLIPAHGALGAAQ AYMATYIVYFSLCCGVFLLWRRRA" misc_feature 3984842..3986089 /gene="wzxE" /locus_tag="SF3866" /note="lipid III flippase WzxE; Region: PRK15099" /db_xref="CDD:185054" gene 3986089..3987168 /gene="yifM" /locus_tag="SF3867" /db_xref="GeneID:1025968" CDS 3986089..3987168 /gene="yifM" /locus_tag="SF3867" /codon_start=1 /transl_table=11 /product="4-alpha-L-fucosyltransferase" /protein_id="NP_709597.1" /db_xref="GeneID:1025968" /translation="MTVLIHVLGSDIPHHNRTVLRFFNDALAATSEHAREFMVVGKDD GLSDSCPALSVQFFPGKKSLAEAVIAKAKANRQQRFFFHGQFNPTLWLALLSGGIKPS QFFWHIWGADLYELSSGLRYKLFYPLRRLAQKRVGCVFATRGDLSFFAKTHPKVRGEL LYFPTRMDPSLNTMANDRQREGKMTILVGNSGDRSNEHVAALRAVHQQFGDTVKVVVP MGYPPNNEAYIEEVRQAGLELFSEENLQILSEKLEFDAYLALLRQCDLGYFIFARQQG IGTLCLLIQAGIPCVLNRENPFWQDMTEQHLPVLFTTDDLNEDIVREAQRQLASADKN TIAFFSPNYLQGWQRALAIAAGEVA" misc_feature 3986089..3987156 /gene="yifM" /locus_tag="SF3867" /note="4-alpha-L-fucosyltransferase glycosyl transferase group 56; Region: Glyco_transf_56; pfam07429" /db_xref="CDD:429459" gene 3987165..3988517 /gene="wecF" /locus_tag="SF3868" /db_xref="GeneID:1025963" CDS 3987165..3988517 /gene="wecF" /locus_tag="SF3868" /codon_start=1 /transl_table=11 /product="common antigen polymerase" /protein_id="NP_709598.1" /db_xref="GeneID:1025963" /translation="MSLLQFSGLFVVWLLCTLFIATLTWFEFRRVRFNFNVFFSLLFL LTFFFGFPLTSVLVFRFDVGVAPPEILLQVLLSAGCFYAVYYVTYKTRLRKRVADVPR RPLFTMNRVETNLTWVILMGIALVSVGIFFMHNGFLLFRLNSYSQIFSSEVSGVALKR FFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIG IIRGWISLWMLAAAGVLGIVGMFWLALKRYGMNVSGDEAFYTFLYLTRDTFSPWENLA LLLQNYDNIDFQGLAPIVRDFYVFIPSWLWPGRPSMVLNSANYFTWEVLNNHSGLAIS PTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNRETNRYKAAILHSFCFGAIF NMIVLAREGLDSFVSRVVFFIVVFGACLMIAKLLYWLFESAGLIHKRTKSSLRTQVEG " misc_feature 3987165..3988514 /gene="wecF" /locus_tag="SF3868" /note="O-antigen assembly polymerase; Region: PRK02975" /db_xref="CDD:179518" gene 3988520..3989260 /gene="wecG" /locus_tag="SF3869" /db_xref="GeneID:1024174" CDS 3988520..3989260 /gene="wecG" /locus_tag="SF3869" /note="Code: M; COG: COG1922" /codon_start=1 /transl_table=11 /product="UDP-N-acetyl-D-mannosaminuronic acid transferase" /protein_id="NP_709599.1" /db_xref="GeneID:1024174" /translation="MNNNTTAPTYTLRGLQLIGWRDMQHALDYLFADGQLKQGTLVAI NAEKMLTIEDNAEVRELINAAEFKYADGISIVRSVRKKYPQAQVSRVAGADLWEELMA RAGKEGTPVFLVGGKPEVLAQTEAKLRNQWNVNIVGSQDGYFKPEQRQALFERIHASG AQIVTVAMGSPKQEIFMRDCRLVHPDALYMGVGGTYDVFTGHVKRAPKIWQTLGLEWL YRLLSQPSRIKRQLRLLRYLRWHYTGNL" misc_feature 3988529..3989257 /gene="wecG" /locus_tag="SF3869" /note="putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional; Region: PRK03692" /db_xref="CDD:179631" gene 3989451..3990835 /locus_tag="SF3870" /db_xref="GeneID:1026024" gene 3990938..3991014 /locus_tag="SF4525" /db_xref="GeneID:3161771" tRNA 3990938..3991014 /locus_tag="SF4525" /product="tRNA-Arg" /codon_recognized="CGG" /db_xref="GeneID:3161771" gene 3991073..3991148 /locus_tag="SF4526" /db_xref="GeneID:3161816" tRNA 3991073..3991148 /locus_tag="SF4526" /product="tRNA-His" /codon_recognized="CAC" /db_xref="GeneID:3161816" gene 3991169..3991255 /locus_tag="SF4527" /db_xref="GeneID:3161797" tRNA 3991169..3991255 /locus_tag="SF4527" /product="tRNA-Leu" /codon_recognized="CUG" /db_xref="GeneID:3161797" gene 3991298..3991374 /locus_tag="SF4528" /db_xref="GeneID:3161813" tRNA 3991298..3991374 /locus_tag="SF4528" /product="tRNA-Pro" /codon_recognized="CCA" /db_xref="GeneID:3161813" gene 3991521..3992756 /gene="aslB" /locus_tag="SF3871" /db_xref="GeneID:1025990" CDS 3991521..3992756 /gene="aslB" /locus_tag="SF3871" /note="Code: R; COG: COG0641" /codon_start=1 /transl_table=11 /product="arylsulfatase" /protein_id="NP_709601.2" /db_xref="GeneID:1025990" /translation="MLQQVPTRAFHVIAKPSGSDCNLNCDYCFYLEKQSLYREKPVTH MDDDTLEAYIRHYIAASELQNEVAFTWQGGEPTLLGLEFYRRAVALQAKYGAGRKISN SFQTNGVLLDDEWCAFLAENNFLVGLSLDGPAEIHNQYRVTKGGRPTHKLVMRALTLL QKHHVDYNVLVCVNRTSAQQPLQVYDFLCDAGVEFIQFIPVVERLADETAVRDGLKLH APGDIQGELTEWSVRPDEFGEFLVAIFDHWIKRDVGKIFVMNIEWAFANFVGAPGAVC HHQPTCGRSVIVEHNGDVYACDHYVYPQYRLGNMHQQTIAEMIDSPQQQVFGEDKFKQ LPAQCRSCNVLKACWGGCPKHRFMLDASGKPGLNYLCAGYQRYFRHLPPYLKAMADLL AHGRPASDIMQAHLMVVNK" misc_feature 3991551..3992693 /gene="aslB" /locus_tag="SF3871" /note="anaerobic sulfatase-maturating enzyme; Region: sulfatase_rSAM; TIGR03942" /db_xref="CDD:188457" mobile_element complement(3992915..3994245) /mobile_element_type="insertion sequence:IS2" gene complement(3992926..3993831) /locus_tag="SF3872" /db_xref="GeneID:1025962" CDS complement(3992926..3993831) /locus_tag="SF3872" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_709602.1" /db_xref="GeneID:1025962" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREVLHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSSVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(3992929..3993831) /locus_tag="SF3872" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(3993789..3994199) /locus_tag="SF3873" /db_xref="GeneID:1025979" CDS complement(3993789..3994199) /locus_tag="SF3873" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_709603.3" /db_xref="GeneID:1025979" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(3993792..3994154) /locus_tag="SF3873" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene complement(3995016..3996212) /gene="hemY" /locus_tag="SF3874" /db_xref="GeneID:1026713" CDS complement(3995016..3996212) /gene="hemY" /locus_tag="SF3874" /note="Code: H; COG: COG3071" /codon_start=1 /transl_table=11 /product="protoheme IX biogenesis protein" /protein_id="NP_709604.1" /db_xref="GeneID:1026713" /translation="MLKVLLLFVLLIAGIVVGPMIAGHQGYVLIQTDNYNIETSVTGL AIILILAMVVLFAIEWLLRRIFRTGAHTRGWFVGRKRRRARKQTEQALLKLAEGDYQQ VEKLMAKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITRV RLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTGAWSSLLDIIPSMAKAHV GDEEHRAMLEQQAWIGLMDQARADNGSEGLRNWWKNQSRKTRHQVALQVAMAEHLIEC DDHDTAQQIIIDGLKRQYDDRLLLPIPRLKTNNPEQLEKVLRQQIKNVGDRPLLWSTL GQSLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLTL QNNPPQ" misc_feature complement(3995019..3996179) /gene="hemY" /locus_tag="SF3874" /note="putative protoheme IX biogenesis protein; Provisional; Region: PRK10747" /db_xref="CDD:182695" misc_feature complement(3995142..3995234) /gene="hemY" /locus_tag="SF3874" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(3995049..3995132) /gene="hemY" /locus_tag="SF3874" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene complement(3996215..3997432) /gene="hemX" /locus_tag="SF3875" /db_xref="GeneID:1025977" CDS complement(3996215..3997432) /gene="hemX" /locus_tag="SF3875" /note="Code: S; COG: COG2959" /codon_start=1 /transl_table=11 /product="uroporphyrinogen III C-methyltransferase" /protein_id="NP_709605.1" /db_xref="GeneID:1025977" /translation="MTEQEKTSAVVEETREAVDTTSQPVATEKKSKNNTALILSAVAI AIALAAGVGLYGWGKQQAVNQTATSDALANQLTALQKAQESQKAELEGIIKQQAAQLK QANRQQETLAKQLDEVQQKIATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTSAA LLKSADASLADMNDPSLITVRRAITDDIASLSAVSQVDYDGIILKLNQLSNQVDNLRL ADNDSDGSPMDSDGEELSSSISEWRINLQKSWQNFMDNFITIRRRDDTAVPLLAPNQD IYLRENIRSRLLVAAQAVPRHQEETYRQALENVSTWVRAYYDTDDATTKAFLDEVDQL SQQNISMDLPETLQSQAMLEKLMQTRVRNLLAQPAAGTTEAKPAPAPAPAPAPAPAPA PQGDTPAAAPQGE" misc_feature complement(3996218..3997432) /gene="hemX" /locus_tag="SF3875" /note="putative uroporphyrinogen III C-methyltransferase; Provisional; Region: PRK10920" /db_xref="CDD:236795" gene complement(3997454..3998194) /gene="hemD" /locus_tag="SF3876" /db_xref="GeneID:1025980" CDS complement(3997454..3998194) /gene="hemD" /locus_tag="SF3876" /note="Code: H; COG: COG1587" /codon_start=1 /transl_table=11 /product="uroporphyrinogen-III synthase" /protein_id="NP_709606.1" /db_xref="GeneID:1025980" /translation="MSILVTRPSPAGEELVSRLRTLGQVAWHFPLIEFSPGRQLPQLA DQLAALGESDLLFALSQHAVAFAQSQLHQQDRKWPQLPTYFAIGRTTALALHTVSGQK ILYPQDREISEVLLQLPELQNIAGKRALILRGNGGRELIGDTLTVRGAEVTFCECYQR CAIHYDGAEEAMRWQSREVTMVVVTSGEMLQQLWSLIPQWYREHWLLHCRLLVVSERL AKLARELGWQDIKVADNADNDALLRALQ" misc_feature complement(3997457..3998194) /gene="hemD" /locus_tag="SF3876" /note="uroporphyrinogen-III synthase; Reviewed; Region: hemD; PRK05928" /db_xref="CDD:235647" misc_feature complement(order(3997628..3997642,3997715..3997717, 3997721..3997723,3997793..3997795,3997925..3997927, 3998009..3998017,3998174..3998176)) /gene="hemD" /locus_tag="SF3876" /note="active site" /db_xref="CDD:119440" gene complement(3998191..3999132) /gene="hemC" /locus_tag="SF3877" /db_xref="GeneID:1026830" CDS complement(3998191..3999132) /gene="hemC" /locus_tag="SF3877" /note="Code: H; COG: COG0181" /codon_start=1 /transl_table=11 /product="porphobilinogen deaminase" /protein_id="NP_709607.2" /db_xref="GeneID:1026830" /translation="MLDNVLRIATRQSPLALWQAHYVKDKLMASHPGLVVELVPMVTR GDVILDTPLAKVGGKGLFVKELEVALLENRADIAVHSMKDVPVEFPQGLGLVTICERE DPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLD NGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDTRTRELLAA LNHHETALRVTAERAMNTRLEGGCQVPIGSYAELIDGEIWLCALVGAPDGSQIIRGER RGAPQDAEQMGISLAEELLNNGAREILAEVYNGEAPA" misc_feature complement(3998212..3999123) /gene="hemC" /locus_tag="SF3877" /note="Porphobilinogen deaminase [Coenzyme transport and metabolism]; Region: HemC; COG0181" /db_xref="CDD:439951" gene 3999519..4002065 /gene="cyaA" /locus_tag="SF3878" /db_xref="GeneID:1025984" CDS 3999519..4002065 /gene="cyaA" /locus_tag="SF3878" /note="Code: F; COG: COG3072" /codon_start=1 /transl_table=11 /product="adenylate cyclase" /protein_id="NP_709608.1" /db_xref="GeneID:1025984" /translation="MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHY HHPRMPGYLDGNVPKGICLYTPDETQRHYLNELELYRGMSVQDPPKGELPITGVYTMG STSSVGQSCSSDLDIWVCHQSWLDSEERQLLQRKCSLLESWAASLGVEVSFFLIDENR FRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWNMVPCDEEEHYDDYVMTL YAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYP NPRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDFTRLDLVRRCFYLKVC EKLSRERACVGWRRAVLSQLVSEWGWDEARLAMLDNRANWKIDQVREAHNELLDAMMQ SYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLT FIYVPPGRANRSGWYLYNRAPNIESIISHQPLEYNRYLNKLVAWAWFNGLLTSRTRLY IKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAF RNQVVHFDFRKLDVFSFGENQNCLVGSVDLLYRNSWNEVRTLHFNGEQSMIEALKTIL GKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVS GQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNHVKLPAVVDGFASEG IIQFFFEETQDENGFNIYILDESNRVEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGS SFINFNLPQFYQIVKVDGREQVIPFRTKSIGNLPPANQDHDTPLLQQYFS" misc_feature 3999519..4001993 /gene="cyaA" /locus_tag="SF3878" /note="Adenylate cyclase, class I [Signal transduction mechanisms]; Region: CyaA; COG3072" /db_xref="CDD:442306" gene complement(4002105..4002425) /gene="cyaY" /locus_tag="SF3880" /db_xref="GeneID:1027573" CDS complement(4002105..4002425) /gene="cyaY" /locus_tag="SF3880" /note="Code: P; COG: COG1965" /codon_start=1 /transl_table=11 /product="frataxin-like protein" /protein_id="NP_709609.1" /db_xref="GeneID:1027573" /translation="MNDSEFHRLADQLWLTIEERLDDRDGDSDIDCEINGGVLTITFE NGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWICDRSGETFWDLLEQAATQQAGET VSFR" misc_feature complement(4002108..4002425) /gene="cyaY" /locus_tag="SF3880" /note="frataxin-like protein; Provisional; Region: cyaY; PRK00446" /db_xref="CDD:234765" misc_feature complement(order(4002333..4002335,4002339..4002341, 4002357..4002362,4002369..4002371,4002381..4002383, 4002390..4002395,4002417..4002419)) /gene="cyaY" /locus_tag="SF3880" /note="putative iron binding site [ion binding]; other site" /db_xref="CDD:238280" misc_feature 4002216..4006040 /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790240 (162 aa). BLAST with identity of 97% in 1275 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element 4002899..4003666 /mobile_element_type="insertion sequence:IS1" gene 4002954..4003229 /gene="insA" /locus_tag="SF3881" /db_xref="GeneID:1026006" CDS 4002954..4003229 /gene="insA" /locus_tag="SF3881" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709610.1" /db_xref="GeneID:1026006" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 4002975..>4003226 /gene="insA" /locus_tag="SF3881" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4003256..4003651 /gene="insB" /locus_tag="SF3882" /db_xref="GeneID:1025989" CDS 4003256..4003651 /gene="insB" /locus_tag="SF3882" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709611.1" /db_xref="GeneID:1025989" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 4003259..4003648 /gene="insB" /locus_tag="SF3882" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4003586..4004563) /locus_tag="SF3883" /db_xref="GeneID:1025987" CDS complement(4003586..4004563) /locus_tag="SF3883" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709612.1" /db_xref="GeneID:1025987" /translation="MKGQIITVALILLGHTFLTPAVQAIGFDYYNDHGVMSYGKGYWG DKKIIAQFPEMSRAGLRLVKNISGKTGYIPSDEISIENEEYHWVTDGRVILWRGKIVS NPPGTLTVDIASFQAMGRFAVDKYSLYFDGQRTESNSGASRVELATLKAIEGNSTTLV DSKNLYLSGRRQGSSSDVTVLEKRWWGINPRLMSVNRNSYSNDLLIRSGQNIYLNGVH LTANADSFEIIRWIPHSLLVFRDNKGLHRYPFGQLSGKAIPVDDDVSFEVGESRVRWR KQLTPDRQWSKWIDLPGIEPEQFGNDSNLLIVFYVQIMPDDLVMQLHRF" gene complement(4004560..4006038) /locus_tag="SF3884" /pseudogene="unknown" /db_xref="GeneID:1025999" gene 4006227..4006430 /gene="yifL" /locus_tag="SF3886" /db_xref="GeneID:1025975" CDS 4006227..4006430 /gene="yifL" /locus_tag="SF3886" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_709615.1" /db_xref="GeneID:1025975" /translation="MKNVFKALTVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKPVET QTQSTVPDKNDRATGDGPSQVNY" misc_feature 4006227..4006355 /gene="yifL" /locus_tag="SF3886" /note="Small periplasmic lipoprotein YifL (function unknown) [Function unknown]; Region: YifL; COG5567" /db_xref="CDD:444309" gene 4006464..4007291 /gene="dapF" /locus_tag="SF3887" /db_xref="GeneID:1027396" CDS 4006464..4007291 /gene="dapF" /locus_tag="SF3887" /note="Code: E; COG: COG0253" /codon_start=1 /transl_table=11 /product="diaminopimelate epimerase" /protein_id="NP_709616.3" /db_xref="GeneID:1027396" /translation="MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLADRHLGVGFD QLLVVEPPYDPELDFHYRIFNADGSEVAQCGNGARCFARFVRLKGLTNKRDIRVSTAN GRMVLTVTDDDLVRVNMGEPNFEPSAVPFRANKAEKTYIMRAAEQTILCGVVSMGNPH CVIQVDDVDTAAVETLGPVLESHERFPERANIGFMQVVKREHIRLRVYERGAGETQAC GSGACAAVAVGIQQGLLDEEVRVELPGGRLDIAWKGPGHPLYMTGPAVHVYDGFIHL" misc_feature 4006464..4007288 /gene="dapF" /locus_tag="SF3887" /note="Diaminopimelate epimerase [Amino acid transport and metabolism]; Region: DapF; COG0253" /db_xref="CDD:440023" gene 4007288..4007995 /gene="yigA" /locus_tag="SF3888" /db_xref="GeneID:1026870" CDS 4007288..4007995 /gene="yigA" /locus_tag="SF3888" /note="Code: S; COG: COG3159" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709617.1" /db_xref="GeneID:1026870" /translation="MKQPGEELQETLTELDDRAVVDYLIKNPEFFIRNARAVEAIRVP HPVRGTISLVEWHMARARNHIHVLEENMALLMEQAIANEGLFYRLLYLQRSLTAASSL DDMLMRFHRWARDLGLAGASLRLFPDRWRLGAPSNHTHLALSRQSFEPLRIQRLGQEQ HYLGPLNGPELLVVLPEAKAVGSVAMSMLGSDADLGVVLFTSRDASHYQQGQGTQLLH EIALMLPELLERWIERV" misc_feature 4007324..4007992 /gene="yigA" /locus_tag="SF3888" /note="hypothetical protein; Provisional; Region: PRK10963" /db_xref="CDD:236808" gene 4007992..4008888 /gene="xerC" /locus_tag="SF3889" /db_xref="GeneID:1026940" CDS 4007992..4008888 /gene="xerC" /locus_tag="SF3889" /note="Code: L; COG: COG0582" /codon_start=1 /transl_table=11 /product="site-specific tyrosine recombinase XerC" /protein_id="NP_709618.1" /db_xref="GeneID:1026940" /translation="MTDLHTDVERYLRYLSVERQLSPITLLNYQRQLEAIINFASENG LQSWQQCDAAMVRNFAVRSRRKGLGAASLALRLSALRSFFDWLVSQNELKANPAKGVS APKAPRHLPKNIDVDDMNRLLDIDINDPLAVRDRAMLEVMYGAGLRLSELVGLDIKHL DLESGEVWVMGKGSKERRLPIGRNAVAWIEHWLDLRDLFGSEDDALFLSKLGKRISAR NVQKRFAEWGIKQGLNNHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQIYT HLDFQHLASVYDAAHPRAKRGK" misc_feature 4007992..4008873 /gene="xerC" /locus_tag="SF3889" /note="site-specific tyrosine recombinase XerC; Reviewed; Region: xerC; PRK00236" /db_xref="CDD:234698" misc_feature order(4008433..4008435,4008709..4008711,4008718..4008723, 4008814..4008816) /gene="xerC" /locus_tag="SF3889" /note="active site" /db_xref="CDD:271179" gene 4008888..4009604 /gene="yigB" /locus_tag="SF3890" /db_xref="GeneID:1025991" CDS 4008888..4009604 /gene="yigB" /locus_tag="SF3890" /note="Code: R; COG: COG1011" /codon_start=1 /transl_table=11 /product="flavin mononucleotide phosphatase" /protein_id="NP_709619.1" /db_xref="GeneID:1025991" /translation="MRFYRPLGRISALTFDLDDTLYDNRPVILRTEREALTFVQNYHP ALRSFQNEDLQRLRQAVREAEPEIYHDVTRWRFRSIEQAMLDAGLSAEEASAGAHAAM INFAKWRSRIDVPQQTHDTLKQLAKKWPLVAITNGNAQPELFGLGDYFEFVLRAGPHG RSKPFSDMYFLAAEKLNVPIGEILHVGDDLTTDVGGAIRSGMQACWIRPENGDLMQTW DSRLLPHLEISRLASLTSLI" misc_feature 4008888..4009601 /gene="yigB" /locus_tag="SF3890" /note="5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB; Region: PRK10748" /db_xref="CDD:182696" gene 4009688..4011850 /gene="uvrD" /locus_tag="SF3891" /db_xref="GeneID:1024638" CDS 4009688..4011850 /gene="uvrD" /locus_tag="SF3891" /note="Code: L; COG: COG0210" /codon_start=1 /transl_table=11 /product="DNA-dependent helicase II" /protein_id="NP_709620.2" /db_xref="GeneID:1024638" /translation="MDVSYLLDSLNDKQREAVAAPRSNLLVLAGAGSGKTRVLVHRIA WLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH MDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNIL VDEFQDTNNIQYAWIRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAEI IRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVV NRIKTWQDNGGALAECAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDAL SYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQACRELLQEKAL AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIEN LEELVTATRQFSYNEEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTMHSAKGLE FPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKE VYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGTPMVENDSGYKLGQRVRHAKFG EGTIVNMEGSGEHSRLQVAFQGQGIKWLVAAYARLESV" misc_feature 4009688..4011847 /gene="uvrD" /locus_tag="SF3891" /note="DNA-dependent helicase II; Provisional; Region: uvrD; PRK11773" /db_xref="CDD:236976" gene complement(4012275..4014199) /gene="yigE" /locus_tag="SF3893" /pseudo /db_xref="GeneID:1025445" misc_feature complement(4012275..4014199) /gene="yigE" /locus_tag="SF3893" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790248 (162 aa). BLAST with identity of 99% in 641 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." /pseudo mobile_element 4012437..4013864 /mobile_element_type="insertion sequence:IS4" gene 4012504..4013850 /locus_tag="SF3892" /db_xref="GeneID:1026876" CDS 4012504..4013850 /locus_tag="SF3892" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_709621.1" /db_xref="GeneID:1026876" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMVLERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGEEMADLYSNRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMSDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature 4012594..4013592 /locus_tag="SF3892" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene 4014569..4015519 /gene="corA" /locus_tag="SF3894" /db_xref="GeneID:1027370" CDS 4014569..4015519 /gene="corA" /locus_tag="SF3894" /note="Code: P; COG: COG0598" /codon_start=1 /transl_table=11 /product="magnesium/nickel/cobalt transporter CorA" /protein_id="NP_709622.2" /db_xref="GeneID:1027370" /translation="MLSAFQLENNRLTRLEVEESQPLVNAVWIDLVEPDDDERLRVQS ELGQSLATRPELEDIEASARFFEDDDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLF TLRERELPAFRLYRMRARSQSMVDGNAYELLLDLFETKIEQLADEIENIYSDLEQLSR VIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQARE ILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSY GMNFEFMPELKWSFGYPGAIIFMILAGLAPYLYFKRKNWL" misc_feature 4014569..4015516 /gene="corA" /locus_tag="SF3894" /note="magnesium/cobalt transporter CorA; Region: PRK11085" /db_xref="CDD:182951" misc_feature order(4014656..4014658,4014755..4014757,4014791..4014793, 4014797..4014799,4014839..4014841,4014881..4014892, 4014896..4014901,4014986..4014988,4014995..4014997, 4015154..4015159,4015166..4015168,4015226..4015228) /gene="corA" /locus_tag="SF3894" /note="Cl binding site [ion binding]; other site" /db_xref="CDD:213369" misc_feature order(4014728..4014730,4014737..4014742,4014758..4014760, 4014764..4014766,4014908..4014910,4014920..4014922, 4014959..4014961,4014968..4014970,4014980..4014982, 4014992..4014994,4015001..4015006,4015013..4015015, 4015022..4015027,4015031..4015036,4015043..4015045, 4015091..4015096,4015100..4015105,4015112..4015117, 4015124..4015129,4015133..4015138,4015148..4015150, 4015154..4015159,4015166..4015171,4015178..4015183, 4015208..4015213,4015217..4015222,4015229..4015234, 4015238..4015243,4015250..4015255,4015259..4015264, 4015268..4015276,4015283..4015306,4015310..4015348, 4015352..4015360,4015364..4015381,4015385..4015408, 4015442..4015447,4015454..4015459,4015493..4015495, 4015502..4015504) /gene="corA" /locus_tag="SF3894" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:213369" gene complement(4015560..4015940) /gene="yigF" /locus_tag="SF3895" /db_xref="GeneID:1027492" CDS complement(4015560..4015940) /gene="yigF" /locus_tag="SF3895" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709623.2" /db_xref="GeneID:1027492" /translation="MSKEYMNDDSLSEKWKYRFNFYDQHGFPGFWGATPEYKAAFKAL KVRQRLTIQMNFIAFFCSWIYLFVLGLWKKAIIVLLLGILSLFVGALIGVNILGIAVA AYVAVNTNKWFYEKEVKGLNTWSL" misc_feature complement(4015590..4015781) /gene="yigF" /locus_tag="SF3895" /note="Protein of unknown function (DUF2628); Region: DUF2628; pfam10947" /db_xref="CDD:431552" gene complement(4015954..4016370) /gene="yigG" /locus_tag="SF3896" /db_xref="GeneID:1026740" CDS complement(4015954..4016370) /gene="yigG" /locus_tag="SF3896" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709624.2" /db_xref="GeneID:1026740" /translation="MLTGDSHKDVKFMLRMFIPTSNGKISRHRYIFLFILINFIFAFL IIFFNDGEAGFLVIVSTIALHYLVINMNCQRLRDSGFIYIKIYVFGTLAVYIISIITM IAEDFACSGNGSMIFLICYFSTFSMLMLAPTDSSKQ" misc_feature complement(4015957..4016334) /gene="yigG" /locus_tag="SF3896" /note="hypothetical protein; Provisional; Region: PRK11371" /db_xref="CDD:183104" gene complement(4016429..4017319) /gene="rarD" /locus_tag="SF3897" /db_xref="GeneID:1026867" CDS complement(4016429..4017319) /gene="rarD" /locus_tag="SF3897" /note="Code: R; COG: COG2962" /codon_start=1 /transl_table=11 /product="chloramphenical resistance permease RarD" /protein_id="NP_709625.1" /db_xref="GeneID:1026867" /translation="MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVI WSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEA SLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFS FAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAIADSSTSHMGQNPMSLNLLLIA AGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFTFI WVALAIFVMDAIYTQRRTSK" misc_feature complement(4016432..4017319) /gene="rarD" /locus_tag="SF3897" /note="EamA family transporter RarD; Region: PRK15430" /db_xref="CDD:185328" gene complement(4017371..4017856) /gene="yigI" /locus_tag="SF3898" /db_xref="GeneID:1025923" CDS complement(4017371..4017856) /gene="yigI" /locus_tag="SF3898" /note="Code: Q; COG: COG2050" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709626.3" /db_xref="GeneID:1025923" /translation="MKCKDDMSAVLTAEQALKLVGEMFVYHMPFNRALGMELERYEKE FAQLAFKNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRL SRMGTIDLRVDYLRPGRGERFTATSSLLRAGNKVAVARVELHNEEQLYIASATATYMV G" misc_feature complement(4017374..4017829) /gene="yigI" /locus_tag="SF3898" /note="thioesterase family protein; Region: PRK11688" /db_xref="CDD:183276" misc_feature complement(order(4017506..4017517,4017536..4017538, 4017662..4017664)) /gene="yigI" /locus_tag="SF3898" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:239527" misc_feature complement(order(4017515..4017517,4017521..4017535, 4017644..4017646,4017653..4017655,4017659..4017661)) /gene="yigI" /locus_tag="SF3898" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:239527" misc_feature complement(order(4017536..4017538,4017617..4017622, 4017629..4017634,4017656..4017658)) /gene="yigI" /locus_tag="SF3898" /note="PHB binding site [active]" /db_xref="CDD:239527" gene 4018003..4018872 /gene="pldA" /locus_tag="SF3899" /db_xref="GeneID:1023494" CDS 4018003..4018872 /gene="pldA" /locus_tag="SF3899" /note="Code: M; COG: COG2829" /codon_start=1 /transl_table=11 /product="phospholipase A" /protein_id="NP_709627.1" /db_xref="GeneID:1023494" /translation="MRTLQGWLLPVFMLPMAVYAQEATVKEVHDAPAVRGSIIANMLQ EHDNPFTLYPYDTNYLIYTQTSDLNKEAIASYDWAENARKDEVKFQLSLAFPLWRGIL GPNSVLGASYTQKSWWQLSNSEESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGY NHDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVVGNTDDNPDITKYMGYYQLK IGYHLGDAVLSAKGQYNWNTGYGGAELGLSYPITKHVRLYTQVYSGYGESLIDYNFNQ TRVGVGVMLNDLF" misc_feature 4018003..4018869 /gene="pldA" /locus_tag="SF3899" /note="phospholipase A; Provisional; Region: PRK10763" /db_xref="CDD:182708" misc_feature order(4018156..4018158,4018273..4018275,4018279..4018281, 4018342..4018344,4018387..4018389) /gene="pldA" /locus_tag="SF3899" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238302" misc_feature order(4018180..4018182,4018273..4018275,4018279..4018281, 4018285..4018287,4018291..4018293,4018336..4018338, 4018354..4018356,4018378..4018380,4018387..4018389, 4018486..4018488,4018492..4018494,4018498..4018500, 4018765..4018767) /gene="pldA" /locus_tag="SF3899" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238302" misc_feature order(4018486..4018488,4018492..4018494,4018528..4018530) /gene="pldA" /locus_tag="SF3899" /note="active site" /db_xref="CDD:238302" misc_feature order(4018507..4018509,4018516..4018518,4018612..4018614) /gene="pldA" /locus_tag="SF3899" /note="calcium binding site [ion binding]; other site" /db_xref="CDD:238302" gene 4018999..4020834 /gene="recQ" /locus_tag="SF3900" /db_xref="GeneID:1025456" CDS 4018999..4020834 /gene="recQ" /locus_tag="SF3900" /note="Code: L; COG: COG0514" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase RecQ" /protein_id="NP_709628.2" /db_xref="GeneID:1025456" /translation="MNVAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRD CLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQT REQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDF RPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYM LMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLENNV RADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGL PAEAMLFYDPADMAWLRRCLEEKPQGQLQDIERHKLNAMGAFAEAQTCRRLVLLNYFG EGRQEPCGNCDICLDPPKQYDGSTDAQIALSTIGRVNQRFGMGYVVEVIRGANNQRIR DYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLRGES SLQLAVPRIVALKPKAMQKSFGGNYDRKLFAKLRKLRKSIADESNVPPYVVFNDATLI EMAEQMPITASEMLSVNGVGMRKLERFGKPFMALIRAHVDGDDEE" misc_feature 4019005..4020825 /gene="recQ" /locus_tag="SF3900" /note="ATP-dependent DNA helicase RecQ; Provisional; Region: PRK11057" /db_xref="CDD:182933" gene 4020898..4021518 /gene="yigJ" /locus_tag="SF3901" /db_xref="GeneID:1027389" CDS 4020898..4021518 /gene="yigJ" /locus_tag="SF3901" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709629.3" /db_xref="GeneID:1027389" /translation="MLMLFLTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLG ITCGVMVWAGIALLGLHLIIEKMAWLHTLIMVGGGLYLCWMGYQMLRGALKKEAVSAP APQVELAKSGRSFLKGLLTNLANPKAIIYFGSVFSLFVGDNVGTTERWGIFALIIVET LAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR" misc_feature 4020898..4021515 /gene="yigJ" /locus_tag="SF3901" /note="threonine efflux system; Provisional; Region: PRK10229" /db_xref="CDD:236665" gene complement(4021580..4022200) /gene="yigK" /locus_tag="SF3902" /db_xref="GeneID:1023482" CDS complement(4021580..4022200) /gene="yigK" /locus_tag="SF3902" /note="Code: E; COG: COG1280" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709630.3" /db_xref="GeneID:1023482" /translation="MTLEWWFAYLLTSIILSLSPGSGAINTMTTSLNHGYRGAVASIA GLQTGLAIHIVLVGVGLGTLFSRSVIAFEVLKWAGAAYLIWLGIQQWRAAGAIDLKSL ASTQSRRHLFQRAVFVNLTNPKSIVFLAALFPQFIMPQQPQLMQYIVLGVTTIVVDII VMIGYATLAQRIALWIKGPKQMKALNKIFGSLFMLVGALLASARHA" misc_feature complement(4021586..4022200) /gene="yigK" /locus_tag="SF3902" /note="homoserine/homoserine lactone efflux protein; Provisional; Region: rhtB; PRK10520" /db_xref="CDD:182514" gene 4022311..4023333 /gene="pldB" /locus_tag="SF3903" /db_xref="GeneID:1025855" CDS 4022311..4023333 /gene="pldB" /locus_tag="SF3903" /note="Code: I; COG: COG2267" /codon_start=1 /transl_table=11 /product="lysophospholipase L2" /protein_id="NP_709631.1" /db_xref="GeneID:1025855" /translation="MFQQQKDWETRENAFAAFTMGPLTDFWRQRDEAEFTGVDDIPVR FVRFRAQHHDRVVVICPGRIESYVKYAELAYDLFHLGFDVLIIDHRGQGRSGRLLADP HLGHVNRFNDYVDDLAAFWQQEVQPGPWRKRYILAHSMGGAISTLFLQRHPGVCDAIA LTAPMFGIVIRMPSFMARQILNWAEAHPRFRDGYAIGTGRWRALPFAINVLTHSRQRY RRNLRFYADDPTIRVGGPTYHWVRESILAGEQVLAGAGDDATQTLLLQAEEERVVDNR MHDRFCELRTAAGHPVEGGRPLVIKGAYHEILFEKDAMRSVALHAIVDFFNRHNSPSG NRSTEV" misc_feature 4022311..4023300 /gene="pldB" /locus_tag="SF3903" /note="lysophospholipase L2; Provisional; Region: PRK10749" /db_xref="CDD:182697" gene 4023341..4024141 /gene="yigL" /locus_tag="SF3904" /db_xref="GeneID:1025080" CDS 4023341..4024141 /gene="yigL" /locus_tag="SF3904" /note="Code: R; COG: COG0561" /codon_start=1 /transl_table=11 /product="hydrolase" /protein_id="NP_709632.2" /db_xref="GeneID:1025080" /translation="MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGINFVFATGR HHVDVGQIRDNLEIKSYMITSNGARVHDLDGNLIFAHNLDRDIASDLFGVVNDNPDII TNVYRDDEWFMNRHRPEEMRFFKEAVFKYALYEPGLLEPEGISKVFFTCDSHEQLLPL EQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMND AEMLSMAGKGCIMGSAHQRLKDLHPELEVIGTNADDAVPHYLRKLYLS" misc_feature 4023341..4024135 /gene="yigL" /locus_tag="SF3904" /note="putative hydrolase; Provisional; Region: PRK10976" /db_xref="CDD:182878" gene 4024217..4025116 /gene="yigM" /locus_tag="SF3905" /db_xref="GeneID:1026911" CDS 4024217..4025116 /gene="yigM" /locus_tag="SF3905" /note="Code: GER; COG: COG0697" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709633.1" /db_xref="GeneID:1026911" /translation="MALLIITTILWAFSFSFYGEYLAGHVDSYFAVLVRVGLAALVFL PFLRTRSNSLKTVGLYMLVGAMQLGVMYMLSFRAYLYLTVSELLLFTVLTPLYITLIY DIMSKRRLRWGYAFSALLAVIGAGIIRYDQVTDHFWTGLLLVQLSNITFAIGMVGYKR LMETRPMPQYNAFAWFYLGAFLVAVIAWFLLGNAQKMPQTTLQWGILVFLGVVASGIG YFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPTFITGALVILASLWVH RKWVAPRSSQTADDRRRDCALSE" misc_feature 4024247..4025035 /gene="yigM" /locus_tag="SF3905" /note="Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950" /db_xref="CDD:273359" gene complement(4025004..4025957) /gene="metR" /locus_tag="SF3906" /db_xref="GeneID:1025727" CDS complement(4025004..4025957) /gene="metR" /locus_tag="SF3906" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator MetR" /protein_id="NP_709634.1" /db_xref="GeneID:1025727" /translation="MIEVKHLKTLQALRNCGSLAAAAATLHQTQSALSHQFSDLEQRL GFRLFVRKSQPLRFTPQGEILLQLANQVLPQISQALQACNEPQQTRLRIAIECHSCIQ WLTPALENFHKNWPQVEMDFKSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFD YEVRLVLAPDHPLAAKTRITPEDLASETLLIYPVQRSRLDVWRHFLQPAGVSPSLKSV DNTLLLIQMVAARMGIAALPHWVVESFERQGLVVTKTLGEGLWSRLYAAVRDGEQRQP VTEAFIRSARNHACDHLPFVKSAERPTYDAPTVRPGSPARL" misc_feature complement(4025007..4025957) /gene="metR" /locus_tag="SF3906" /note="HTH-type transcriptional regulator MetR; Region: PRK15421" /db_xref="CDD:185319" gene 4026193..4028454 /gene="metE" /locus_tag="SF3907" /db_xref="GeneID:1026746" CDS 4026193..4028454 /gene="metE" /locus_tag="SF3907" /note="Code: E; COG: COG0620" /codon_start=1 /transl_table=11 /product="5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase" /protein_id="NP_709635.1" /db_xref="GeneID:1026746" /translation="MTILNHTLGFPRVGLRRELKKAQESYWAGNSTREELLTVGRELR ARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPPRHQNKDGSVDIDTLFRIGRG RAPTGEPAAAAEMTKWFNTNYHYMVPEFVKGQQFKLTWTQLLEEVDEALALSHNVKPV LLGPVTYLWLGKVKGEQFDRLSLLNDILPVYQQVLAELAKRGIEWVQIDEPALVLELP QAWLDAYKPAYDALQGQVKLLLTTYFEGVTPNLDTITALPVQGLHVDLVHGKDNVVEL HKRLPSDWLLSAGLINGRNVWRADLTEKYAQIKDIVGKRDLWVASSCSLLHSPIDLSV ETRLDAEVKSWFAFALQKCHELALLRDALNSGDTAALAEWSAPIQARRHSTRVHNPAV EKRLAAITAQDSQRANVYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRTLRLDFKKG NLDANNYRTGIAEHIKQAIVEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGW VQSYGSRCVKPPIVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPRE DVSRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLQWGVEA FRINAAVAKDDTQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEEFDY PNEIGPGVYDIHSPNVPSVEWIEALLKKAAKRIPAERLWVNPDCGLKTRGWPETRAAL ANMVQAAQNLRRG" misc_feature 4026196..4028448 /gene="metE" /locus_tag="SF3907" /note="5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional; Region: PRK05222" /db_xref="CDD:235367" gene complement(4028493..4029374) /locus_tag="SF3908" /db_xref="GeneID:1023626" CDS complement(4028493..4029374) /locus_tag="SF3908" /note="Code: Q; COG: COG0412" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709636.1" /db_xref="GeneID:1023626" /translation="MICCMLTIVNIAQHFYKGTENTMATTQQSGFAPAASPLASTIVQ TPDDAIVAGFTSIPSQGDNMPAYHARPKQSDGPLPVVIVVQEIFGVHEHIRDICRRLA LEGYLAIAPELYFREGDPNDFADIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDV HRLMITGFCWGGRITWLYAAHNPQLKAAVAWYGKLTGDKSLNSPKQPVDIATDLNAPV LGLYGGQDNSIPQESVETMRQALRAANAKAEIIVYPDAGHAFNADYRPSYHAESAKDG WQRMLEWFKQYGGKKSL" misc_feature complement(4028517..4029182) /locus_tag="SF3908" /note="Dienelactone hydrolase family; Region: DLH; pfam01738" /db_xref="CDD:396343" gene 4029570..4030331 /gene="udp" /locus_tag="SF3909" /db_xref="GeneID:1026729" CDS 4029570..4030331 /gene="udp" /locus_tag="SF3909" /note="Code: F; COG: COG2820" /codon_start=1 /transl_table=11 /product="uridine phosphorylase" /protein_id="NP_709637.2" /db_xref="GeneID:1026729" /translation="MSKSDVFHLGLTKNDLQGATLAIVPGDPDRVEKIAALMDKPVKL ASHREFTTWRAELDGKPVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHI NVGDVLVTTASVRLDGASLHFAPLEFPAVADFECTTALVEAAKSIGATTHVGVTVSSD TFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAG VIVNRTQQEIPNAETMKQTESHAVKIVVEAARRLL" misc_feature 4029579..4030328 /gene="udp" /locus_tag="SF3909" /note="uridine phosphorylase; Provisional; Region: PRK11178" /db_xref="CDD:183018" misc_feature order(4029588..4029593,4029645..4029653,4029657..4029659, 4029711..4029719,4029771..4029779,4029783..4029788, 4029792..4029797,4029804..4029809,4029813..4029818, 4029900..4029917,4029921..4029926,4029930..4029938, 4029951..4029962,4029969..4029971,4029978..4029983, 4030032..4030034,4030044..4030058,4030125..4030130, 4030134..4030139,4030158..4030160,4030188..4030196) /gene="udp" /locus_tag="SF3909" /note="homohexamer interface [polypeptide binding]; other site" /db_xref="CDD:350167" misc_feature order(4029642..4029650,4029657..4029659,4029840..4029851, 4030161..4030163) /gene="udp" /locus_tag="SF3909" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:350167" misc_feature order(4029645..4029650,4029657..4029659,4029774..4029776, 4029840..4029857,4030053..4030055,4030152..4030163, 4030227..4030232) /gene="udp" /locus_tag="SF3909" /note="active site" /db_xref="CDD:350167" misc_feature order(4029774..4029776,4029840..4029842,4029849..4029857, 4030053..4030055,4030152..4030163,4030227..4030232) /gene="udp" /locus_tag="SF3909" /note="pyrimidine nucleoside binding site [chemical binding]; other site" /db_xref="CDD:350167" gene 4030487..4031899 /gene="yigN" /locus_tag="SF3910" /db_xref="GeneID:1027620" CDS 4030487..4031899 /gene="yigN" /locus_tag="SF3910" /note="Code: S; COG: COG1322" /codon_start=1 /transl_table=11 /product="DNA recombination protein RmuC" /protein_id="NP_709638.2" /db_xref="GeneID:1027620" /translation="MVYAVIALVGVAIGWLFASYQHAQQKAEQLAEREEMVAELSAAK QQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINS EQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQ ERHTLTHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEASGLREGY EYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYTRESALQ EHIASVRNHIRLLGRKDYQQLPGLRTLDYVLMFIPVEPAFLLALDRQPELITEALKNN IMLVSPTTLLVALRTIANLWRYEHQSRNAQQIADRASKLYDKMRLFIDDMSAIGQSLD KAQDNYRQAMKKLSSGRGNVLAQAEAFRGLGVEIKREINPDLAEQAVSQDEEYRLRSV PEQPNDEAYQRDDEYNQQSR" misc_feature 4030487..4031896 /gene="yigN" /locus_tag="SF3910" /note="DNA recombination protein RmuC; Provisional; Region: PRK10361" /db_xref="CDD:182409" gene 4031994..4032749 /gene="ubiE" /locus_tag="SF3911" /db_xref="GeneID:1027495" CDS 4031994..4032749 /gene="ubiE" /locus_tag="SF3911" /note="Code: H; COG: COG2226" /codon_start=1 /transl_table=11 /product="ubiquinone/menaquinone biosynthesis methyltransferase" /protein_id="NP_709639.1" /db_xref="GeneID:1027495" /translation="MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMS FGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLK MGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVL KPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQ DTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF" misc_feature 4032030..4032746 /gene="ubiE" /locus_tag="SF3911" /note="bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE; Region: ubiE; PRK00216" /db_xref="CDD:234689" misc_feature order(4032201..4032221,4032276..4032281,4032357..4032365, 4032408..4032410) /gene="ubiE" /locus_tag="SF3911" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 4032763..4033368 /gene="yigP" /locus_tag="SF3912" /db_xref="GeneID:1025101" CDS 4032763..4033368 /gene="yigP" /locus_tag="SF3912" /note="Code: S; COG: COG3165" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709640.2" /db_xref="GeneID:1025101" /translation="MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGF STSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLTALIRSGELEVQGDI QVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKAMRGGAKFLHHGIKRQQRYVAEA ITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK" misc_feature 4032766..4033365 /gene="yigP" /locus_tag="SF3912" /note="Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain [Coenzyme transport and metabolism]; Region: UbiJ; COG3165" /db_xref="CDD:442398" gene 4033365..4035005 /gene="ubiB" /locus_tag="SF3913" /db_xref="GeneID:1025448" CDS 4033365..4035005 /gene="ubiB" /locus_tag="SF3913" /note="Code: R; COG: COG0661" /codon_start=1 /transl_table=11 /product="ubiquinone biosynthesis protein UbiB" /protein_id="NP_709641.1" /db_xref="GeneID:1025448" /translation="MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWM PNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDG KLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDIL PVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRR NFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVQVFF TQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFN RDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTAR RFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAF KEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGAT LVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR" misc_feature 4033371..4034999 /gene="ubiB" /locus_tag="SF3913" /note="putative ubiquinone biosynthesis protein UbiB; Reviewed; Region: ubiB; PRK04750" /db_xref="CDD:235310" misc_feature order(4033791..4033796,4033800..4033808,4033812..4033814, 4033842..4033844,4033848..4033850,4034034..4034036, 4034091..4034102,4034226..4034228,4034238..4034243, 4034247..4034249,4034289..4034294) /gene="ubiB" /locus_tag="SF3913" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:270874" gene 4035042..4035353 /gene="tatA" /locus_tag="SF3914" /db_xref="GeneID:1026145" CDS 4035042..4035353 /gene="tatA" /locus_tag="SF3914" /note="Code: N; COG: COG1826" /codon_start=1 /transl_table=11 /product="twin-arginine translocation protein TatA" /protein_id="NP_709642.1" /db_xref="GeneID:1026145" /translation="MRLCLIIIYHRGTCMGGISIWQLLIIAVIVVLLFGTKKLGSIGS DLGASIKGFKKAMSDDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQ V" misc_feature 4035084..4035350 /gene="tatA" /locus_tag="SF3914" /note="Sec-independent protein translocase subunit TatA; Region: tatA; PRK03554" /db_xref="CDD:179592" gene 4035357..4035872 /locus_tag="SF3915" /db_xref="GeneID:1027383" CDS 4035357..4035872 /locus_tag="SF3915" /note="Code: N; COG: COG1826" /codon_start=1 /transl_table=11 /product="sec-independent translocase" /protein_id="NP_709643.1" /db_xref="GeneID:1027383" /translation="MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLAT TVQNELTQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPE KASDEAHTIHNPVVKDNEAAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKT AAPSPSSSDKP" misc_feature 4035357..4035869 /locus_tag="SF3915" /note="sec-independent translocase; Provisional; Region: PRK04654" /db_xref="CDD:135173" misc_feature 4035360..4035599 /locus_tag="SF3915" /note="twin arginine-targeting protein translocase TatB; Region: tatB; TIGR01410" /db_xref="CDD:130477" gene 4035875..4036651 /gene="yigU" /locus_tag="SF3916" /db_xref="GeneID:1026809" CDS 4035875..4036651 /gene="yigU" /locus_tag="SF3916" /note="Code: N; COG: COG0805" /codon_start=1 /transl_table=11 /product="twin-arginine protein translocation system subunit TatC" /protein_id="NP_709644.1" /db_xref="GeneID:1026809" /translation="MSVEDTQPLITHLIELRKRLLNCIIAVIVIFLCLVYFANDIYHL VSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH ERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMA LFMAFGVSFEVPVAIVLLCWMGITSSEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLL AIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE" misc_feature 4035875..4036648 /gene="yigU" /locus_tag="SF3916" /note="Sec-independent protein translocase subunit TatC; Region: PRK10921" /db_xref="CDD:182840" gene 4036693..4037475 /gene="yigW" /locus_tag="SF3917" /db_xref="GeneID:1023554" CDS 4036693..4037475 /gene="yigW" /locus_tag="SF3917" /note="Code: L; COG: COG0084" /codon_start=1 /transl_table=11 /product="DNase TatD" /protein_id="NP_709645.2" /db_xref="GeneID:1023554" /translation="MFDIGVNLTSSQFAKDRDDVVARAFDAGVNGLLITGTNLRESQQ AQKLARQYSSCWSTAGVHPHDSSQWQAATEEAIIELAAQPEVVAIGECGLDFNRNFST PEEQERAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREE MQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSS RRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF" misc_feature 4036693..4037466 /gene="yigW" /locus_tag="SF3917" /note="3'-5' ssDNA/RNA exonuclease TatD; Region: PRK10425" /db_xref="CDD:182449" misc_feature order(4036705..4036707,4036711..4036713,4037071..4037073, 4037146..4037148,4037299..4037301) /gene="yigW" /locus_tag="SF3917" /note="active site" /db_xref="CDD:238635" gene complement(4037472..4037960) /gene="rfaH" /locus_tag="SF3918" /db_xref="GeneID:1027361" CDS complement(4037472..4037960) /gene="rfaH" /locus_tag="SF3918" /note="Code: K; COG: COG0250" /codon_start=1 /transl_table=11 /product="transcriptional activator RfaH" /protein_id="NP_709646.1" /db_xref="GeneID:1027361" /translation="MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRT AVSEPLFPNYLFVEFDPEVIHTTTISATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK DIVDPAPPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR KL" misc_feature complement(4037475..4037960) /gene="rfaH" /locus_tag="SF3918" /note="transcription/translation regulatory transformer protein RfaH; Region: rfaH; PRK09014" /db_xref="CDD:181611" gene 4038127..4039620 /gene="yigC" /locus_tag="SF3919" /db_xref="GeneID:1026004" CDS 4038127..4039620 /gene="yigC" /locus_tag="SF3919" /note="Code: H; COG: COG0043" /codon_start=1 /transl_table=11 /product="3-octaprenyl-4-hydroxybenzoate decarboxylase" /protein_id="NP_709647.1" /db_xref="GeneID:1026004" /translation="MDAMKYNDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLR AGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSTLREVGKLLAFLKEPEPPK GFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWPEDAAPLIT WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVS VALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGY IDPGEMAPEGPYGDHTGYYNEVDNFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGV ALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQF MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSK MGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA" misc_feature 4038127..4039617 /gene="yigC" /locus_tag="SF3919" /note="4-hydroxy-3-polyprenylbenzoate decarboxylase; Region: PRK10922" /db_xref="CDD:236796" gene 4039666..4040367 /gene="fre" /locus_tag="SF3920" /db_xref="GeneID:1027618" CDS 4039666..4040367 /gene="fre" /locus_tag="SF3920" /note="Code: HC; COG: COG0543" /codon_start=1 /transl_table=11 /product="FMN reductase" /protein_id="NP_709648.2" /db_xref="GeneID:1027618" /translation="MTTLSCKVTSVAAITDTVYRVRIVPDAAFSFRAGQYLMVVMDER DKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDHQIVVDLPHGEAWLRDDE ERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHL GLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSER NAREDRLFGDAFAFI" misc_feature 4039669..4040364 /gene="fre" /locus_tag="SF3920" /note="FMN reductase; Validated; Region: fre; PRK08051" /db_xref="CDD:236142" gene complement(4040559..4041722) /gene="fadA" /locus_tag="SF3921" /db_xref="GeneID:1026914" CDS complement(4040559..4041722) /gene="fadA" /locus_tag="SF3921" /note="Code: I; COG: COG0183" /codon_start=1 /transl_table=11 /product="3-ketoacyl-CoA thiolase" /protein_id="NP_709649.1" /db_xref="GeneID:1026914" /translation="MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPA LEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAA RMIMTGDAQACLVGGVEHIGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGI SREMQDAFAARSHARAWAATQSAAFKNEIIPTGGHDADGVLKQFNYDEVIRPETTVEA LATLRPAFDPVNGTVTAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCD PSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINL NGGAIALGHPLGCSGARISTTLLNLMERKDVQFGLATMCIGLGQGIATVFERV" misc_feature complement(4040562..4041722) /gene="fadA" /locus_tag="SF3921" /note="3-ketoacyl-CoA thiolase; Reviewed; Region: fadA; PRK08947" /db_xref="CDD:181592" gene complement(4041732..4043921) /gene="fadB" /locus_tag="SF3922" /db_xref="GeneID:1024323" CDS complement(4041732..4043921) /gene="fadB" /locus_tag="SF3922" /codon_start=1 /transl_table=11 /product="multifunctional fatty acid oxidation complex subunit alpha" /protein_id="NP_709650.2" /db_xref="GeneID:1024323" /translation="MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIG VLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLP VPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGA DSALEIIAAGKDVGADQALKIGLVDGVVKAEKLIEGAMAILRQAINGDLDWKAKRQPK QEPLKLSKIEATMSFTIAKGMVAQTAGKHYPAPITAVKTIEAAARFGREEALNLENKS FVPLAHTNEARALVGIFLNDQYVKGKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAW KGVPVVMKDINDKSLTLGMTEAAKLLNKQLERGKIDGLKLAGVISTIHPTLDYAGFDR VDIVVEAVVENPKVKKAVLAETEQKVRQDTVLASNTSTIPISELANALERPENFCGMH FFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFA GFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQK DYRDAIDALFDANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVEDLLAEVSQPKRDFSE EEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAK YLDMAQQYQHLGPLYEVPEGLRNKARHNEPYYPPVEPARPVGDLKTA" misc_feature complement(4041777..4043921) /gene="fadB" /locus_tag="SF3922" /note="fatty acid oxidation complex subunit alpha FadB; Region: fadB; PRK11730" /db_xref="CDD:183293" gene 4044111..4045442 /gene="pepQ" /locus_tag="SF3923" /db_xref="GeneID:1024129" CDS 4044111..4045442 /gene="pepQ" /locus_tag="SF3923" /note="Code: E; COG: COG0006" /codon_start=1 /transl_table=11 /product="proline dipeptidase" /protein_id="NP_709651.1" /db_xref="GeneID:1024129" /translation="MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLD DHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTE DVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRS FKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIV ALNEHAAVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKD VNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMP HGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRYTRILQPGMVLTIEPGIYFIES LLAPWREGQFSKHFNWQKIEALKPFGGIRIEDNVVIHENNVENMTRDLKLA" misc_feature 4044111..4045439 /gene="pepQ" /locus_tag="SF3923" /note="proline dipeptidase; Provisional; Region: PRK13607" /db_xref="CDD:237444" gene 4045442..4046056 /gene="yigZ" /locus_tag="SF3924" /db_xref="GeneID:1026826" CDS 4045442..4046056 /gene="yigZ" /locus_tag="SF3924" /note="Code: S; COG: COG1739" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709652.2" /db_xref="GeneID:1026826" /translation="MESWLIPAAPVTVVEEIKKSRFITMLAHTDGVEAAKAFVESVRA EHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRY YGGILLGTGGLVKAYGGGVNQALRQLTTQRKTPLTEYTLQCEYSQLTGIEALLGQCDG KIINSDYQAFVLLRVALPAAKVAEFSAKLADFSRGSLQLLAIEE" misc_feature 4045442..4046053 /gene="yigZ" /locus_tag="SF3924" /note="IMPACT family protein; Region: PRK11568" /db_xref="CDD:183205" gene 4046095..4047546 /gene="trkH" /locus_tag="SF3925" /db_xref="GeneID:1023595" CDS 4046095..4047546 /gene="trkH" /locus_tag="SF3925" /note="Code: P; COG: COG0168" /codon_start=1 /transl_table=11 /product="potassium transporter" /protein_id="NP_709653.1" /db_xref="GeneID:1023595" /translation="MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFF VALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAF FESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQL YRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATI AIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRM FIGVQFTLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLP VLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER ILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSM NPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE" misc_feature 4046095..4047543 /gene="trkH" /locus_tag="SF3925" /note="Trk system potassium transporter TrkH; Region: PRK10750" /db_xref="CDD:182698" gene 4047558..4048103 /gene="hemG" /locus_tag="SF3926" /db_xref="GeneID:1025468" CDS 4047558..4048103 /gene="hemG" /locus_tag="SF3926" /note="Code: C; COG: COG0716" /codon_start=1 /transl_table=11 /product="protoporphyrinogen oxidase" /protein_id="NP_709654.1" /db_xref="GeneID:1025468" /translation="MKTLILFSTRDGQTREIASYLASELKELGIQTDVANVHRIEEPQ WENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTN SYARKFLMNSQWRPDRCAVIAGALRYPRYRWYDRFMLKLIMKMSGGETDTRKEVVYTD WEQVANFAREIAHLTDKPTLK" misc_feature 4047558..4048091 /gene="hemG" /locus_tag="SF3926" /note="menaquinone-dependent protoporphyrinogen IX dehydrogenase; Region: hemG; PRK11104" /db_xref="CDD:182966" gene 4048481..4050022 /gene="rrsA" /locus_tag="SF4529" /db_xref="GeneID:1025789" rRNA 4048481..4050022 /gene="rrsA" /locus_tag="SF4529" /product="16S ribosomal RNA" /db_xref="GeneID:1025789" gene 4050108..4050183 /locus_tag="SF4530" /db_xref="GeneID:3161853" tRNA 4050108..4050183 /locus_tag="SF4530" /product="tRNA-Glu" /codon_recognized="GAA" /db_xref="GeneID:3161853" gene 4050377..4053280 /gene="rrlA" /locus_tag="SF4531" /db_xref="GeneID:1023459" rRNA 4050377..4053280 /gene="rrlA" /locus_tag="SF4531" /product="23S ribosomal RNA" /db_xref="GeneID:1023459" gene 4053375..4053493 /gene="rrfA" /locus_tag="SF4532" /db_xref="GeneID:1026761" rRNA 4053375..4053493 /gene="rrfA" /locus_tag="SF4532" /product="5S ribosomal RNA" /db_xref="GeneID:1026761" gene complement(4053593..4054120) /gene="mobB" /locus_tag="SF3927" /db_xref="GeneID:1025063" CDS complement(4053593..4054120) /gene="mobB" /locus_tag="SF3927" /note="Code: H; COG: COG1763" /codon_start=1 /transl_table=11 /product="molybdopterin-guanine dinucleotide biosynthesis protein B" /protein_id="NP_709655.1" /db_xref="GeneID:1025063" /translation="MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT HHDMDVDKPGKDSYELRKAGAVQTIVASQQRWALMTETPDEEELDLHFLASRMDTSKL DLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVE GLADFVVEWMQKQNG" misc_feature complement(4053599..4054117) /gene="mobB" /locus_tag="SF3927" /note="molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional; Region: PRK10751" /db_xref="CDD:236750" misc_feature complement(order(4053686..4053691,4053788..4053790, 4053797..4053799,4053989..4053991,4053995..4053997, 4054055..4054075)) /gene="mobB" /locus_tag="SF3927" /note="putative active site [active]" /db_xref="CDD:349770" misc_feature complement(order(4053830..4053835,4053842..4053844, 4053854..4053856,4053881..4053904,4053911..4053934, 4053941..4053946,4053989..4054009,4054025..4054027, 4054034..4054039,4054046..4054048)) /gene="mobB" /locus_tag="SF3927" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349770" gene complement(4054102..4054686) /gene="mobA" /locus_tag="SF3928" /db_xref="GeneID:1026748" CDS complement(4054102..4054686) /gene="mobA" /locus_tag="SF3928" /note="Code: H; COG: COG0746" /codon_start=1 /transl_table=11 /product="molybdopterin-guanine dinucleotide biosynthesis protein MobA" /protein_id="NP_709656.1" /db_xref="GeneID:1026748" /translation="MNLMTTITGVVLAGGKARRMGGVDKGLLDLNGKPLWQHVADALK TQLSHVVVNANRHQEIYQAGGLKVIEDSLADYPGPLAGMLSVMQQEAGEWFLFCPCDT PYIPHDLAARLNHQRKDAPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAF MRLAGGHAVDFSDHKDAFVNVNTPEELARWQEKR" misc_feature complement(4054105..4054677) /gene="mobA" /locus_tag="SF3928" /note="molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed; Region: mobA; PRK00317" /db_xref="CDD:234725" misc_feature complement(order(4054384..4054386,4054390..4054392, 4054441..4054443,4054450..4054455,4054474..4054476, 4054528..4054530,4054612..4054614,4054639..4054641, 4054645..4054653)) /gene="mobA" /locus_tag="SF3928" /note="GTP binding site [active]" /db_xref="CDD:133000" gene 4054756..4055025 /gene="yihD" /locus_tag="SF3929" /db_xref="GeneID:1026865" CDS 4054756..4055025 /gene="yihD" /locus_tag="SF3929" /note="Code: S; COG: COG3084" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709657.2" /db_xref="GeneID:1026865" /translation="MKCKRLNEVIELLQPAWQKEPDFNLLQFLQKLAKESGFDGELAD LTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE" misc_feature 4054756..4055022 /gene="yihD" /locus_tag="SF3929" /note="Uncharacterized conserved protein YihD, DUF1040 family [Function unknown]; Region: YihD; COG3084" /db_xref="CDD:442318" gene 4055102..4056088 /gene="yihE" /locus_tag="SF3930" /db_xref="GeneID:1024218" CDS 4055102..4056088 /gene="yihE" /locus_tag="SF3930" /note="Code: R; COG: COG2334" /codon_start=1 /transl_table=11 /product="serine/threonine protein kinase" /protein_id="NP_709658.1" /db_xref="GeneID:1024218" /translation="MNNSAFTFQTLHPDTIMDALFKQGIRVDSGLTPLNSYENRVYQF QDEERRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFY FAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLF EDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRDGPMFVDL DDARNGPAIQDLWMLLNGDKAQQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVY YLAWLMRHWADPAFPKNFPWLTGEDYWLRQTATFIEQAKVLQEPPLQLTPMY" misc_feature 4055102..4056073 /gene="yihE" /locus_tag="SF3930" /note="serine/threonine protein kinase; Region: PRK11768" /db_xref="CDD:236974" gene 4056105..4056731 /gene="dsbA" /locus_tag="SF3931" /db_xref="GeneID:1023438" CDS 4056105..4056731 /gene="dsbA" /locus_tag="SF3931" /note="Code: OC; COG: COG0526" /codon_start=1 /transl_table=11 /product="periplasmic protein disulfide isomerase I" /protein_id="NP_709659.1" /db_xref="GeneID:1023438" /translation="MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKPVAGAPQVLEF FSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKDLTQAWAVAMALG VEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKA AADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEEK" misc_feature 4056105..4056728 /gene="dsbA" /locus_tag="SF3931" /note="thiol:disulfide interchange protein DsbA; Region: PRK10954" /db_xref="CDD:182863" misc_feature order(4056249..4056251,4056255..4056260,4056612..4056614) /gene="dsbA" /locus_tag="SF3931" /note="catalytic residues [active]" /db_xref="CDD:239317" misc_feature 4056348..4056356 /gene="dsbA" /locus_tag="SF3931" /note="hinge region; other site" /db_xref="CDD:239317" misc_feature order(4056372..4056398,4056411..4056470,4056477..4056503, 4056519..4056548) /gene="dsbA" /locus_tag="SF3931" /note="alpha helical domain; other site" /db_xref="CDD:239317" gene 4056844..4058316 /gene="yihF" /locus_tag="SF3932" /db_xref="GeneID:1025051" CDS 4056844..4058316 /gene="yihF" /locus_tag="SF3932" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709660.2" /db_xref="GeneID:1025051" /translation="MDIQSFAVLSGNIYMIRKSATGVIVALAVIWGGGTWYTGTQIQP GIEKFIKDFNDAKKKGEHAYDMTLSYKNFDKGFFNSRFQMQMTFDNGAPDLNIKPGQK VVFDVDVEHGPLPITMLMHGNVIPALAAAKVNLVNNELTQPLFIAAKNKSPVEATLRF AFGGSFSTTLDVAPAEYGKFSFGEGQFTFNGDGSSLSNLDIEGKVEDIVLQLSPMNKV TAKSFTIDSLARLEEKKFPVGESESKFNQINIINHGEDVAQIDAFVAKTRLDRVKDKD YINVNLTYELDKLTKGNQQLGSGEWSLIAESIDPSAVRQFIIQYNIAMQKQLAAHPEL ANDEVALQEVNAALFKEYLPLLQKSEPTIKQPVRWKNALGELNANLDISIADPAKSSS STNKDIKSLNFDVKLPLNVVTETAKQLNLSEGMDAEKAQKQADKQISGMMTLGQMFQL ITIDNNTASLQLRYTPGKVVFNGQEMSEEEFMSRAGRFVH" misc_feature 4056886..4058313 /gene="yihF" /locus_tag="SF3932" /note="hypothetical protein; Provisional; Region: PRK11367" /db_xref="CDD:183102" gene complement(4058357..4059289) /gene="yihG" /locus_tag="SF3933" /db_xref="GeneID:1025199" CDS complement(4058357..4059289) /gene="yihG" /locus_tag="SF3933" /note="Code: I; COG: COG0204" /codon_start=1 /transl_table=11 /product="acyltransferase" /protein_id="NP_709661.2" /db_xref="GeneID:1025199" /translation="MANLLNKFIMTRILAAITLLLSIVLTILVTIFCSVPIIIAGIVK LLLPVPVIWRKVSRFCDFMMYCWCEGLAVLLHLNPHLQWEVHGLEGLSKKNWYLLICN HRSWADIVVLCVLFRKHIPMNKYFLKQQLAWVPFLGLACWALDMPFMKRYSRAYLLRH PERRGQDVETTRRSCEKFRLHPTTIVNFVEGSRFTQEKHQQTHSTFQNLLPPKAAGIA MALNVLGKQFDKLLNVTLCYPDNNRQPFFDMLSGKLTRIVVHVDLQPIADELHGDYIN DKSFKRHFQQWLNSLWQEKDRLLTSLMSSQRQNK" misc_feature complement(4058360..4059265) /gene="yihG" /locus_tag="SF3933" /note="putative acyltransferase; Provisional; Region: PRK14014" /db_xref="CDD:237584" gene complement(4059409..4059651) /locus_tag="SF3933a" /db_xref="GeneID:16608369" CDS complement(4059409..4059651) /locus_tag="SF3933a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439293.1" /db_xref="GeneID:16608369" /translation="MSVPVYQIMGKGCHRQDENMSFSPLFVKIFCRSAGSLANRHVDN FVHKLFTSLLIYYHAFYSMMFVFVFHAVKNKSIPNN" gene 4059653..4062439 /gene="polA" /locus_tag="SF3934" /db_xref="GeneID:1023540" CDS 4059653..4062439 /gene="polA" /locus_tag="SF3934" /note="Code: L; COG: COG0749" /codon_start=1 /transl_table=11 /product="DNA polymerase I" /protein_id="NP_709662.1" /db_xref="GeneID:1023540" /translation="MVQIPQNPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLN MLRSLIMQYKPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAM GLPLLAVSGVEADDVIGTLAREAEKAGRPVLISTGDKDMAQLVTPNITLINTMTNTIL GPEEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEP EKIAGLSFRGAKTMAAKLEQNKEVAYLSYQLATIKTDVELELTCEQLEVQQPAAEELL GLFKKYEFKRWTADVEVGKWLQAKGAKTAAKPQETSVADEAPEVTATVISYDNYVTIL DEETLKAWIAKLEKAPVFAFDTETDSLDNISANLVGLSFAIEPGVAAYIPVAHDYLDA PDQISHERALELLKPLLEDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILN SVAGRHDMDSLAERWLKHKTITFEEIAGKGKNQLTFNQIALEEAGRYAAEHADVTLQL HLKMWPDLQKHKGPLNVFENIEMPLVPVLSRIERNGVKIDPKVLHNHSEELTLRLAEL EKKAHEIAGEEFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLP KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVR NEEGRRIRQAFIAPEDYVIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAE VFGLPLETVTSEQRRSAKAINFGLIYGMSAFGLARQLNIPRKEAQKYMDLYFERYPGV LEYMERTRAQAKELGYVETLDGRRLYLPDIKSSNGARRAAAERAAINAPMQGTAADII KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDVDAVAKQIHQLMENCTRLDVPL LVEVGSGENWDQAH" misc_feature 4059668..4062436 /gene="polA" /locus_tag="SF3934" /note="DNA polymerase I; Provisional; Region: PRK05755" /db_xref="CDD:235591" gene 4062587..4062695 /gene="spf" /locus_tag="SF4562" /db_xref="GeneID:1027368" ncRNA 4062587..4062695 /ncRNA_class="other" /gene="spf" /locus_tag="SF4562" /product="spot 42 RNA" /note="inhibition of DNA synthesis" /db_xref="GeneID:1027368" gene complement(4062821..4063417) /gene="yihA" /locus_tag="SF3935" /db_xref="GeneID:1027002" CDS complement(4062821..4063417) /gene="yihA" /locus_tag="SF3935" /note="Code: R; COG: COG0218" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709663.4" /db_xref="GeneID:1027002" /translation="MSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS KTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVV LMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARKALLNMVREAVLAFNGD VQVETFSSLKKQGVDKLRQKLDTWFSEMQPVEETQDGE" misc_feature complement(4062863..4063417) /gene="yihA" /locus_tag="SF3935" /note="GTP-binding protein EngB required for normal cell division [Cell cycle control, cell division, chromosome partitioning]; Region: EngB; COG0218" /db_xref="CDD:439988" gene 4064035..4064544 /gene="yihI" /locus_tag="SF3936" /db_xref="GeneID:1027377" CDS 4064035..4064544 /gene="yihI" /locus_tag="SF3936" /note="Code: S; COG: COG3078" /codon_start=1 /transl_table=11 /product="Der GTPase activator" /protein_id="NP_709664.1" /db_xref="GeneID:1027377" /translation="MKPSSSNSRSKGHAKARRKTREELDQEARDRKRQKKRRGHAPGS RAAGGNTTSGSKGQNAPKDPRIGSKTPIPLGVTEKVTKQHKPKSEKPMLSPQAELELL ETDERLDALLERLEAGETLSAEEQSWVDAKLDRIDELMQKLGLSYDDDEEEEEDEKQE DMMRLLRGN" misc_feature 4064035..4064541 /gene="yihI" /locus_tag="SF3936" /note="Der GTPase-activating protein YihI; Region: PRK05244" /db_xref="CDD:235370" gene 4064733..4066106 /gene="hemN" /locus_tag="SF3937" /db_xref="GeneID:1024747" CDS 4064733..4066106 /gene="hemN" /locus_tag="SF3937" /note="Code: H; COG: COG0635" /codon_start=1 /transl_table=11 /product="coproporphyrinogen III oxidase" /protein_id="NP_709665.2" /db_xref="GeneID:1024747" /translation="MSVQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFGEQAFLQA VARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIVHRAPLFAG RHVSQLHWGGGTPTYLNKAQISRLMKLLRENFHFNTDAEISIEVDPREIELDVLDHLR AEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFTSTNIDLIYGLPKQT PESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAF LTQSGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGD CYAQNQKELKQYYQQVYEQGNALWRGIALTRDDCIRRDVIKSLICNFRLDYAPLEKQW DLHFADYFAEDLKLLAPLAKDGLVDVDEKGIQVTAKGRLLIRNICMCFDTYLRQKARM QQFSRVI" misc_feature 4064748..4066103 /gene="hemN" /locus_tag="SF3937" /note="oxygen-independent coproporphyrinogen III oxidase; Region: hemN; TIGR00538" /db_xref="CDD:129629" gene complement(4066557..4067966) /gene="glnG" /locus_tag="SF3938" /db_xref="GeneID:1026591" CDS complement(4066557..4067966) /gene="glnG" /locus_tag="SF3938" /note="Code: T; COG: COG2204" /codon_start=1 /transl_table=11 /product="nitrogen regulation protein NR(I)" /protein_id="NP_709666.2" /db_xref="GeneID:1026591" /translation="MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALA SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL PKPFDIDEAVALVERAISHYQEQQQPRNIQLNGPTTDIIGEAQAMQDVFRIIGRLSRS SISVLINGESGTGKELVAHALHRHSPRTKAPFIALNMAAIPKDLIESELFGHEKGAFT GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI IAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELG VEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVAE STSQMQPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAR LLGWGRNTLTRKLKELGME" misc_feature complement(4066560..4067966) /gene="glnG" /locus_tag="SF3938" /note="nitrogen regulation protein NR(I); Provisional; Region: glnG; PRK10923" /db_xref="CDD:182842" gene complement(4067978..4069027) /gene="glnL" /locus_tag="SF3939" /db_xref="GeneID:1026507" CDS complement(4067978..4069027) /gene="glnL" /locus_tag="SF3939" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="nitrogen regulation protein NR(II)" /protein_id="NP_709667.1" /db_xref="GeneID:1026507" /translation="MATGTQPDAGQILNSLINSILLIDDNLAIHYANPAAQQLLAQSS RKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDG MILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALP DPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNV RLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGER YRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTS WPGHTEFSVYLPIRK" misc_feature complement(4067984..4069027) /gene="glnL" /locus_tag="SF3939" /note="nitrogen regulation protein NR(II); Region: glnL; PRK11073" /db_xref="CDD:182947" gene complement(4069200..4070609) /gene="glnA" /locus_tag="SF3940" /db_xref="GeneID:1025868" CDS complement(4069200..4070609) /gene="glnA" /locus_tag="SF3940" /note="Code: E; COG: COG0174" /codon_start=1 /transl_table=11 /product="glutamine synthetase" /protein_id="NP_709668.1" /db_xref="GeneID:1025868" /translation="MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFF EEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYD RDPRSIAKRAEDYLRSTGIADTVLFGPEPEFFLFDDIRFGSSISGSHVAIDDIEGAWN SSTQYEGGNKGHRPAVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAG QNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLS KNGVNLFAGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLA YSARNRSASIRIPVVSSPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEA MDKNLYDLPPEEAKEIPQVAGSLEEALNELDLDREFLKAGGVFTDEAIDAYIALRREE DDRVRMTPHPVEFELYYSV" misc_feature complement(4069203..4070609) /gene="glnA" /locus_tag="SF3940" /note="glutamate--ammonia ligase; Region: glnA; PRK09469" /db_xref="CDD:181884" gene 4070982..4072805 /gene="yihK" /locus_tag="SF3941" /db_xref="GeneID:1025901" CDS 4070982..4072805 /gene="yihK" /locus_tag="SF3941" /note="Code: N; COG: COG1217" /codon_start=1 /transl_table=11 /product="GTP-binding protein" /protein_id="NP_709669.1" /db_xref="GeneID:1025901" /translation="MIEKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMD SNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAF DGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYV GVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAI TGLGELNISDTVCDTQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDR LNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREI DGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIG FRSEFMTMTSGTGLLYSTFSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRG KLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVVLVPPIRMTLE QALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPKDD" misc_feature 4070982..4072796 /gene="yihK" /locus_tag="SF3941" /note="Predicted membrane GTPase TypA/BipA involved in stress response [Signal transduction mechanisms]; Region: TypA; COG1217" /db_xref="CDD:440830" gene 4073022..4073732 /gene="yihL" /locus_tag="SF3942" /db_xref="GeneID:1025416" CDS 4073022..4073732 /gene="yihL" /locus_tag="SF3942" /note="Code: K; COG: COG2188" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_709670.1" /db_xref="GeneID:1025416" /translation="MAENQSTVENAKEKLDRWLKDGITTPGGKLPSERELGELLGIKR MTLRQALLNLEAESKIFRKDRKGWFVTQPRFNYSPELSASFQRAAIEQGREPSWGFTE KNRTSDIPETLAPLIAVTPSTELYRITGWGALEGHKVFYHETYINPEVAPGFIEQLEN HSFSAVWEKCYQKETVVKKLIFKPVRMPGDISKYLGGSAGMPAILIEKHRADQQGNIV QIDIEYWRFEAVDLIINL" misc_feature 4073055..4073729 /gene="yihL" /locus_tag="SF3942" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: MngR; COG2188" /db_xref="CDD:441791" gene 4073740..4074720 /gene="yihM" /locus_tag="SF3943" /db_xref="GeneID:1026502" CDS 4073740..4074720 /gene="yihM" /locus_tag="SF3943" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709671.1" /db_xref="GeneID:1026502" /translation="MVTINNARKILQRVDTLPLYLHAYAFHLNMRLERVLPADLLDIA SENNLRGVKIHVLDGERFSLGNMDDKELSAFGDKARRLNLDIHIETSASDKASIDEAV AIALKTGATSVRFYPRYEGNLRDVLSIIANDIAYVRETYQDSGLTFTIEQHEDLKSHE LVSLVKESEMESLSLLFDFANMINANEHPIDALKTMAPHITQVHIKDALIVKEQGGLG HKACISGQGDMPFKALLTHLICLGDDEPQVTAYGLEEEVDYYASAFRFEDEDDNPWIP YRQMSETPLPENHLLDARLRKEKEDAINQINHVRNVLQQIKQEANHLLNH" misc_feature 4073848..4074471 /gene="yihM" /locus_tag="SF3943" /note="Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism]; Region: YcjR; COG1082" /db_xref="CDD:440699" gene 4074822..4075880 /gene="yihN" /locus_tag="SF3944" /db_xref="GeneID:1024384" CDS 4074822..4075880 /gene="yihN" /locus_tag="SF3944" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="resistance protein" /protein_id="NP_709672.2" /db_xref="GeneID:1024384" /translation="MLTKKKWALFSLLTLCGGTIYKLPSLKDAFYIPMQEYFHLTNGQ IGNAMSVNSFVTTVGFFLSIYFADKLPRRYTMSFSLIATGLLGVYLTTMPGYWGILFV WALFGVTCDMMNWPVLLKSVSRLGNSEQQGRLFGFFETGRGIVDTVVAFSALAVFTWF GSGLLGFKAGIWFYSLIVIAVGIIIFFVLNDKEEAPSVEVKKEDGASQNTSMTSVLRD KTIWLIAFNVFFVYAVYCGLTFFIPFLKNIYLLPVALVGAYGIINQYCLKMIGGPIGG MISDKILKSPSKYLCYTFIISTAALVLLIMLPHESMPVYLGMACTLGFGAIVFTQRAV FFAPIGEAKIGNAANLLI" misc_feature 4074858..4075847 /gene="yihN" /locus_tag="SF3944" /note="Major Facilitator Superfamily; Region: MFS; cd06174" /db_xref="CDD:349949" misc_feature order(4074879..4074884,4074891..4074896,4074903..4074905, 4074999..4075001,4075149..4075154,4075158..4075160, 4075164..4075169,4075176..4075178,4075236..4075238, 4075245..4075250,4075257..4075259,4075503..4075505, 4075512..4075517,4075524..4075532,4075539..4075541, 4075623..4075625,4075635..4075637,4075800..4075805, 4075815..4075817,4075827..4075829) /gene="yihN" /locus_tag="SF3944" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:349949" mobile_element 4075854..4076620 /mobile_element_type="insertion sequence:IS1" gene 4075909..4076184 /gene="insA" /locus_tag="SF3945" /db_xref="GeneID:1026827" CDS 4075909..4076184 /gene="insA" /locus_tag="SF3945" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709673.1" /db_xref="GeneID:1026827" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 4075930..>4076181 /gene="insA" /locus_tag="SF3945" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4076211..4076606 /gene="insB" /locus_tag="SF3946" /db_xref="GeneID:1023548" CDS 4076211..4076606 /gene="insB" /locus_tag="SF3946" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709674.1" /db_xref="GeneID:1023548" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 4076214..4076603 /gene="insB" /locus_tag="SF3946" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4076600..4076986) /locus_tag="SF3947" /db_xref="GeneID:1027490" CDS complement(4076600..4076986) /locus_tag="SF3947" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709675.1" /db_xref="GeneID:1027490" /translation="MAASLRLKNGLIMKKINAIILLSSLTSASVFAGAYVENREAYNL ASDQGEVMLRVGYNFDMGAGIMLTNTYTFQREDELKHGYNEIEGWYPLFKPTDKLTIQ PGGLINDKSISSGGAVYLDVVMTPTY" misc_feature complement(<4076621..4076950) /locus_tag="SF3947" /note="Oligogalacturonate-specific porin protein (KdgM); Region: KdgM; cl11629" /db_xref="CDD:416341" gene complement(4077018..4078421) /gene="yihO" /locus_tag="SF3948" /db_xref="GeneID:1027501" CDS complement(4077018..4078421) /gene="yihO" /locus_tag="SF3948" /note="Code: G; COG: COG2211" /codon_start=1 /transl_table=11 /product="permease" /protein_id="NP_709676.2" /db_xref="GeneID:1027501" /translation="MSDHNPLTLKLNLREKIAYGMGDVGSNLMLCIGTLYLLKLYTDE LGMPAYYGGIIFLVAKFFTAFTDMLTGFLLDSRKNIGPKGKFRPFILYAAVPAALIAT LQFIATTFCLPVKTTIATTLFMMFGLSYSLMNCSYGAMIPAITKNPNERAQLAAYRQG GATIGLLICTVAFIPLQSLFSDSTVGYACAALMFSIGGFIFMMLCYRGVKEHYVDTAP TGHKASILKSFCAIFRNPPLLVLCIANLCTLAAFNIKLAIQVYYTQYVLNDINLLSWM GFFSMGCILVGVLLVPVTVKCFGKKQVYLAGMVLWAVGDILNYFWGSNSFTFVMFSCV AFFGTAFVNSLNWALVPDTVDYGEWKTGIRAEGSVYTGYTFFRKISAALAGFLPGIML TQIGYVPNIAQSDATLQGLRQLIFIWPCALAIIAALTMGFFYTLNEKRFALIIEEINQ RKNKEMATEKKTASVTL" misc_feature complement(4077069..4078376) /gene="yihO" /locus_tag="SF3948" /note="sugar (Glycoside-Pentoside-Hexuronide) transporter; Region: gph; TIGR00792" /db_xref="CDD:273270" gene complement(4078618..4079838) /locus_tag="SF3949" /pseudogene="unknown" /db_xref="GeneID:1024147" gene complement(4079884..4081920) /gene="yihQ" /locus_tag="SF3950" /db_xref="GeneID:1026755" CDS complement(4079884..4081920) /gene="yihQ" /locus_tag="SF3950" /note="Code: G; COG: COG1501" /codon_start=1 /transl_table=11 /product="alpha-glucosidase" /protein_id="NP_709678.1" /db_xref="GeneID:1026755" /translation="MDTPRPQLLDFQFHQNNDSFTLHFQQRLILTHNKDNPCLWIGSG IADIDMFRGNFSIKDKLQEKIALTDAIVSQSPDGWLIHFSRGSDISATLNISADDQGR LLLELQNDNLNHNRIWLRLAAQPEDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKQ TYVTWQADCKENAGGDYYWTFFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALW EDKATLRFECADTYISLLEKLTALLGRQPELPDWIYDGVTLGIQGGTEVCQKKLDTMR NAGVKVNGIWAQDWSGIRITSFGKRVMWNWKWNSENYPQLDSRIKQWYQEGVQFLAYI NPYVASDKDLCEEAAQHGYLAKDASGGDYLVEFGEFYGGVVDLTNPEAYAWFKEVIKK NMIELGCGGWMADFGEYLPTDTYLHNGVSAEIMHNAWPALWAKCNYEALEETGKLGEI LFFMRAGSTGSQKYSTMMWAGDQNVDWSLDDGLASVVPAALSLAMTGHGLHHSDIGGY TTLFEMKRSKELLLRWCDFSAFTPMMRTHEGNRPGDNWQFDGDAETIAHFARMTTVFT TLKPYLKEAVALNAKSGLPVMRPLFLHYEDDAHTYSLKYQYLLGRDILVAPVHEEGRS DWTLYLPEDNWVHAWTGEAFRGGEVTVNAPIGKPPVFYRAYSEWAALFASLNSI" misc_feature complement(4079887..4081920) /gene="yihQ" /locus_tag="SF3950" /note="alpha-glucosidase; Provisional; Region: PRK10426" /db_xref="CDD:236691" gene complement(4082119..4083021) /gene="yihR" /locus_tag="SF3951" /db_xref="GeneID:1026916" CDS complement(4082119..4083021) /gene="yihR" /locus_tag="SF3951" /note="Code: G; COG: COG2017" /codon_start=1 /transl_table=11 /product="aldose-1-epimerase" /protein_id="NP_709679.2" /db_xref="GeneID:1026916" /translation="MQITNMHCSGQTVSLAAGDYHATIVTVGAGLAELTFQGCHLVIP HKPEEMPLAHLGKVLIPWPNRIANGCYRYQGQEYQLPINEHSSKAAIHGLLAWRDWQI SELTTTSVTLTAFLPPSYGYPFMLASQVVYSLNAHTGLSVEIASQNIGTVAAPYGVGI HPYLTCNLTSVDEYLFQLPANQVYAVDEHVNPTTLHHVDELDLNFTQAKKIAATKIDH TFKTANDLWEMTITHPQQALSVSLCSDQPWVQVYSGEKLQRQGLAVEPMSCPPNAFNS GIDLLLLEPGKPHRLFFNIYGQRK" misc_feature complement(4082122..4083021) /gene="yihR" /locus_tag="SF3951" /note="aldose-1-epimerase; Region: PRK15172" /db_xref="CDD:237918" misc_feature complement(order(4082227..4082229,4082266..4082268, 4082371..4082373,4082533..4082535,4082539..4082541, 4082746..4082748,4082827..4082829)) /gene="yihR" /locus_tag="SF3951" /note="active site" /db_xref="CDD:185699" misc_feature complement(order(4082227..4082229,4082539..4082541)) /gene="yihR" /locus_tag="SF3951" /note="catalytic residues [active]" /db_xref="CDD:185699" gene complement(4083159..4084400) /gene="yihS" /locus_tag="SF3952" /db_xref="GeneID:1023521" CDS complement(4083159..4084400) /gene="yihS" /locus_tag="SF3952" /note="Code: G; COG: COG2942" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709680.2" /db_xref="GeneID:1023521" /translation="MKWFNTLSHNRWLEQETDRIFDFGKNSVVPTGFGWLGNKGQIKE EMGTHLWITARMLHVYSVAAAMGRPGAYALVDHGIKAMNGALRDKKYGGWYACVNDEG VVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEIIEKYFWSEEEQMCLESWDE AFSKTEEYRGGNANMHAVEAFLIVYDVTHDKKWLDRAIRVASVIIHDVARNNHYRVNE HFDTQWNPLPDYNKDNPAHRFRAFGGTPGHWIEWGRLMLHIHAALEARCEQPPAWLLE DAKGLFNATVRDAWAPDGADGIVYTVDWEGKPVVRERVRWPIVEAMGTAYALYTVTGD RQYETWYQTWWEYCIKYLMDYENGSWWQELDADNKVITKVWDGKQDIYHLLHCLVIPR IPLAPGMAPAVAAGLLDINAK" misc_feature complement(order(4083210..4083212,4083222..4083224, 4084173..4084175,4084209..4084211,4084359..4084361, 4084380..4084382)) /gene="yihS" /locus_tag="SF3952" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238153" misc_feature complement(4083240..4084307) /gene="yihS" /locus_tag="SF3952" /note="N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); Region: GlcNAc_2-epim; pfam07221" /db_xref="CDD:399891" misc_feature complement(order(4083243..4083245,4083252..4083257, 4083267..4083269,4083441..4083443,4083453..4083458, 4083636..4083641,4083648..4083650,4083657..4083659, 4083864..4083866,4083873..4083878,4083885..4083887, 4084047..4084049,4084056..4084058,4084068..4084070, 4084227..4084229,4084236..4084238,4084248..4084250)) /gene="yihS" /locus_tag="SF3952" /note="putative active cleft [active]" /db_xref="CDD:238153" gene complement(4084417..4085295) /gene="yihT" /locus_tag="SF3953" /db_xref="GeneID:1023605" CDS complement(4084417..4085295) /gene="yihT" /locus_tag="SF3953" /note="Code: G; COG: COG3684" /codon_start=1 /transl_table=11 /product="aldolase" /protein_id="NP_709681.1" /db_xref="GeneID:1023605" /translation="MNKYTINDITRASGGFAMLAVDQREAMRMMFAAAGAPAPVADSV LTDFKVNAAKALSPYASAILVDQQFCYRQVVEQNAIAKSCAMIVAADEFIPGNGIPVD SVVIDRKINPLQIKQDGGKALKLLVLWRSDEDAQQRLDMVKEFNELCHSHGLVSIIEP VVRPPRRGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGPQQELLCASQRLNDHI NMPWVILSSSVDEKLFPRAVRVAMTAGASGFLAGRAVWASVVGLPDNELMLRDVCAPK LQQLGDIVDEMMAKRR" misc_feature complement(4084522..4085250) /gene="yihT" /locus_tag="SF3953" /note="DeoC/LacD family aldolase; Region: DeoC; pfam01791" /db_xref="CDD:460332" gene complement(4085319..4086215) /gene="yihU" /locus_tag="SF3954" /db_xref="GeneID:1027487" CDS complement(4085319..4086215) /gene="yihU" /locus_tag="SF3954" /note="Code: I; COG: COG2084" /codon_start=1 /transl_table=11 /product="3-sulfolactaldehyde reductase" /protein_id="NP_709682.1" /db_xref="GeneID:1027487" /translation="MAAIAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKG ATPAANPAQAAKDAEFIITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQT DKLIADMQAKGFSMMDVPVGRTSANAITGTLLLLAGGTAEQVERATPILMAMGSELIN AGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALNLPFDVAVKVMSGTAAGKGHFTT SWPNKVLSGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYSQARAAGRGR QDWSAILEQVRVSAGMTAKVKM" misc_feature complement(4085328..4086215) /gene="yihU" /locus_tag="SF3954" /note="sulfolactaldehyde 3-reductase; Region: PRK15461" /db_xref="CDD:185358" gene 4086383..4087279 /gene="yihV" /locus_tag="SF3955" /db_xref="GeneID:1026243" CDS 4086383..4087279 /gene="yihV" /locus_tag="SF3955" /note="Code: G; COG: COG0524" /codon_start=1 /transl_table=11 /product="kinase" /protein_id="NP_709683.2" /db_xref="GeneID:1026243" /translation="MIRVACVGITVMDRIYYVEGLPTESGKYVARNYTEVGGGPAATA AVAAARLGAQVDFIGRVGDDDAGNSLLAELESWGVNTRYTKRYNQAKSSQSAIMVDTK GERIIINYPSPDLLPDAEWLEEIDFSQWDVVLADVRWHDGAKKAFTLARQAGVMTVLD GDITPQDISELVALSDHAAFSEPGLARLTGVKEMASALKQAQTLTNGHVYVTQGSAGC DWLENGGRQHQPAFKVDVVDTTGAGDVFHGALAVALATSGDLAESVRFASGVAALKCT RPGGRAGIPDCDQTRSFLSLFV" misc_feature 4086389..4087240 /gene="yihV" /locus_tag="SF3955" /note="Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time; Region: ribokinase_group_B; cd01945" /db_xref="CDD:238920" misc_feature order(4086509..4086511,4087103..4087105,4087112..4087114) /gene="yihV" /locus_tag="SF3955" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238920" misc_feature order(4086923..4086925,4087016..4087018,4087097..4087099, 4087106..4087111,4087118..4087120,4087184..4087186, 4087193..4087195) /gene="yihV" /locus_tag="SF3955" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238920" gene 4087313..4088098 /gene="yihW" /locus_tag="SF3956" /db_xref="GeneID:1023341" CDS 4087313..4088098 /gene="yihW" /locus_tag="SF3956" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_709684.2" /db_xref="GeneID:1023341" /translation="MSLTELTGNPRHDQLLMLIAERGYMNIDELANLLDVSTQTVRRD IRKLSEQGLITRHHGGAGRASSVVNTAFEQREVSQTEKKKAIAEAVADYIPDGSTIFI TIGTTVEHVARALLNHNHLRIITNSLRVAHILYHNPRFEVMVPGGTLRSHNSGIIGPS AASFVADFRADYLVTSVGAIESDGALMEFDVNEANVVKTMMAHARNILLVADHTKYHA SAAVEIGNVAQVTALFTDELPPAALKSRLQDSQIEIILPQEDA" misc_feature 4087337..4088080 /gene="yihW" /locus_tag="SF3956" /note="DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:440960" gene 4088197..4088796 /gene="yihX" /locus_tag="SF3957" /db_xref="GeneID:1025513" CDS 4088197..4088796 /gene="yihX" /locus_tag="SF3957" /note="Code: R; COG: COG1011" /codon_start=1 /transl_table=11 /product="alpha-D-glucose-1-phosphatase" /protein_id="NP_709685.2" /db_xref="GeneID:1025513" /translation="MLYIFDLGNVIVDIDFNRVLGAWSDLTRIPLASLKKSFHMGEAF HQHERGEISDEAFAEALCHEMALPLSYEQFSHGWQAVFVALRPEVIAIMHKLREQGHR VVVLSNTNRLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEARIYQHVLQAEGFSPSD TVFFDDNADNIEGANQLGITSILVKDKTTIPDYFAKVLC" misc_feature 4088197..4088793 /gene="yihX" /locus_tag="SF3957" /note="?-D-glucose-1-phosphatase; Provisional; Region: PRK09456" /db_xref="CDD:181872" misc_feature order(4088212..4088226,4088515..4088520,4088617..4088619, 4088689..4088694,4088701..4088706) /gene="yihX" /locus_tag="SF3957" /note="active site" /db_xref="CDD:319790" misc_feature 4088602..4088604 /gene="yihX" /locus_tag="SF3957" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:319790" gene 4088790..4089662 /gene="rbn" /locus_tag="SF3958" /db_xref="GeneID:1026582" CDS 4088790..4089662 /gene="rbn" /locus_tag="SF3958" /note="Code: J; COG: COG1295" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709686.1" /db_xref="GeneID:1026582" /translation="MLKTIQDKARHRTRPLWAWLKLLWQRIDEDNMTTLAGNLAYVSL LSLVPLVAVVFALFAAFPMFSDVSIQLRHFIFANFLPATGDVIQRYIEQFVANSNKMT AVGACGLIVTALLLMYSIDSALNTIWRSKRARPKIYSFAVYWMILTLGPLLAGASLAI SSYLLPLRWASDLNTVIDNVLRIFPLLLSWISFWLLYSIVPTIRVPNRDAIVGAFVAA LLFEAGKKGFALYITMFPSYQLIYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYR KLKQAAEQEEDDEP" misc_feature 4088817..4089659 /gene="rbn" /locus_tag="SF3958" /note="virulence factor BrkB family protein; Region: PRK01637" /db_xref="CDD:179313" gene 4089659..4090096 /gene="yihZ" /locus_tag="SF3959" /db_xref="GeneID:1025476" CDS 4089659..4090096 /gene="yihZ" /locus_tag="SF3959" /note="Code: J; COG: COG1490" /codon_start=1 /transl_table=11 /product="D-tyrosyl-tRNA(Tyr) deacylase" /protein_id="NP_709687.1" /db_xref="GeneID:1025476" /translation="MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANR LCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRA EALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV" misc_feature 4089659..4090093 /gene="yihZ" /locus_tag="SF3959" /note="D-aminoacyl-tRNA deacylase [Translation, ribosomal structure and biogenesis]; Region: Dtd; COG1490" /db_xref="CDD:441099" gene 4090093..4091082 /gene="yiiD" /locus_tag="SF3960" /db_xref="GeneID:1025490" CDS 4090093..4091082 /gene="yiiD" /locus_tag="SF3960" /note="Code: KR; COG: COG0454" /codon_start=1 /transl_table=11 /product="acetyltransferase" /protein_id="NP_709688.1" /db_xref="GeneID:1025490" /translation="MSQLPGLSRETRESIAMYHLQVPQTEEELERYYHFRWEMLRKPL HQPKGSERDAWDAMAHHQMVVDEQGNLVAVGRLYINADNEASIRFMVVHPDVQDKGLG TLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKP VATLDDILHRGDWCAQLQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHT LFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHIRYSKPISGKPHAVADLGALS GDLDRLARGRKARVQMQVEIFGDETPGAVFEGTYIVLPAKPFGPYEEGGNEEE" misc_feature 4090168..4090578 /gene="yiiD" /locus_tag="SF3960" /note="Predicted N-acyltransferase, GNAT family [General function prediction only]; Region: ElaA; COG2153" /db_xref="CDD:441756" misc_feature 4090612..4091034 /gene="yiiD" /locus_tag="SF3960" /note="Putative thioesterase (yiiD_Cterm); Region: YiiD_C; pfam09500" /db_xref="CDD:430649" misc_feature order(4090750..4090755,4090864..4090875) /gene="yiiD" /locus_tag="SF3960" /note="active site 2 [active]" /db_xref="CDD:239527" misc_feature order(4090768..4090770,4090777..4090782,4090789..4090791, 4090831..4090839) /gene="yiiD" /locus_tag="SF3960" /note="active site 1 [active]" /db_xref="CDD:239527" mobile_element complement(4091609..4092376) /mobile_element_type="insertion sequence:IS1" gene complement(4091624..4092019) /gene="insB" /locus_tag="SF3961" /db_xref="GeneID:1025475" CDS complement(4091624..4092019) /gene="insB" /locus_tag="SF3961" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709689.1" /db_xref="GeneID:1025475" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(4091627..4092016) /gene="insB" /locus_tag="SF3961" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4092046..4092321) /gene="insA" /locus_tag="SF3962" /db_xref="GeneID:1025339" CDS complement(4092046..4092321) /gene="insA" /locus_tag="SF3962" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709690.1" /db_xref="GeneID:1025339" /translation="MASISIRCPSCSATEGVVRNGKSTAGHLRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<4092049..4092300) /gene="insA" /locus_tag="SF3962" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4092380..4094021 /locus_tag="SF3963" /pseudogene="unknown" /db_xref="GeneID:1023560" gene 4094673..4094918 /gene="yiiE" /locus_tag="SF3965" /db_xref="GeneID:1027773" CDS 4094673..4094918 /gene="yiiE" /locus_tag="SF3965" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709693.2" /db_xref="GeneID:1027773" /translation="MSNICKVVVMAMNTVFLHLSEEAIKRLNKLRGWRKVSRSAILRE AVEQYLERQQFPVRKAKGGRQKGEVVGVDDQCKEHKE" misc_feature 4094709..4094834 /gene="yiiE" /locus_tag="SF3965" /note="ribbon-helix-helix domains of transcription repressor CopG, nickel responsive transcription factor NikR, and similar proteins; Region: RHH_CopG_NikR-like; cd21631" /db_xref="CDD:409020" misc_feature order(4094709..4094729,4094739..4094744,4094748..4094753, 4094760..4094762,4094769..4094771,4094784..4094789, 4094796..4094801,4094805..4094822,4094829..4094831) /gene="yiiE" /locus_tag="SF3965" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:409020" misc_feature order(4094712..4094714,4094718..4094720,4094724..4094726, 4094781..4094789,4094799..4094801) /gene="yiiE" /locus_tag="SF3965" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:409020" gene 4095136..4095378 /gene="yiiF" /locus_tag="SF3966" /db_xref="GeneID:1027768" CDS 4095136..4095378 /gene="yiiF" /locus_tag="SF3966" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709694.2" /db_xref="GeneID:1027768" /translation="MNSLAGIDMGRILLDLSNEVIKQLDDLEVQRNLPRADLLREAVD QYLINQSQTARTSVPGIWQGCEEDGVEYQRKLREEW" gene complement(4095708..4096637) /gene="fdhE" /locus_tag="SF3967" /db_xref="GeneID:1023632" CDS complement(4095708..4096637) /gene="fdhE" /locus_tag="SF3967" /note="Code: O; COG: COG3058" /codon_start=1 /transl_table=11 /product="formate dehydrogenase accessory protein FdhE" /protein_id="NP_709695.1" /db_xref="GeneID:1023632" /translation="MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNLYNRRAERLREL AENNPLGDYLRFAALIAHAQKVVLYDHPLEMDLTARIKEASAQGKPPLDIHVLPRDKH WQKLLMALIAELKPEMSGPALAVIENLEKASTQELEDMASALFASDFSSVSSDKAPFI WAALSLYWAQMANLIPGKARAEYGEQRQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLC ETEWHVVRVKCSNCEQSGKLHYWSLDDEQAAIKAESCDDCGTYLKILYQEKEPKVEAV ADDLASLVLDARMEQEGYARSSINPFLFPGEGE" misc_feature complement(4095711..4096637) /gene="fdhE" /locus_tag="SF3967" /note="formate dehydrogenase accessory protein FdhE; Provisional; Region: PRK03564" /db_xref="CDD:179595" gene complement(4096634..4097269) /gene="fdoI" /locus_tag="SF3968" /db_xref="GeneID:1025556" CDS complement(4096634..4097269) /gene="fdoI" /locus_tag="SF3968" /note="Code: C; COG: COG2864" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-O subunit gamma" /protein_id="NP_709696.1" /db_xref="GeneID:1025556" /translation="MKRRDTIVRYTAPERINHWITAFCFILAAVSGLGFLFPSFNWLM QIMGTPQLARILHPFVGVVMFASFIIMFFRYWHQNLINRDDIFWAKNIRKIVVNEEVG DTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVAL IVVIMVHIYAALWVKGTITAMVEGWVTSAWAKKHHPRWYREVRKTTEKKAE" misc_feature complement(4096637..4097269) /gene="fdoI" /locus_tag="SF3968" /note="formate dehydrogenase cytochrome b556 subunit; Region: PRK10639" /db_xref="CDD:182608" gene complement(4097266..4098168) /gene="fdoH" /locus_tag="SF3969" /db_xref="GeneID:1026918" CDS complement(4097266..4098168) /gene="fdoH" /locus_tag="SF3969" /note="Code: C; COG: COG0437" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-O iron-sulfur subunit" /protein_id="NP_709697.1" /db_xref="GeneID:1026918" /translation="MAYQSQDIIRRSATNGLTPAPQARDFQEEVAKLIDVTTCIGCKA CQVACSEWNDIRDTVGNNIGVYDNPNDLSAKSWTVMRFSEVEQNDKLEWLIRKDGCMH CSDPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFDIPRLNPEDNRVYKC TLCVDRVVVGQEPACVKTCPTGAIHFGTKESMKTLASERVAELKTRGYDNAGLYDPAG VGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGIWKPLAAVGFAATFAASIFHY VGVGPNRADEEENNLHEEKDEERK" misc_feature complement(4097305..4098150) /gene="fdoH" /locus_tag="SF3969" /note="formate dehydrogenase, beta subunit, Fe-S containing; Region: FDH-beta; TIGR01582" /db_xref="CDD:273705" gene complement(4098181..4101231) /gene="fdoG" /locus_tag="SF3970" /db_xref="GeneID:1027782" CDS complement(4098181..4101231) /gene="fdoG" /locus_tag="SF3970" /note="Code: C; COG: COG0243" /codon_start=1 /transl_except=(pos:complement(4100644..4100646),aa:Sec) /transl_table=11 /product="formate dehydrogenase-O major subunit" /protein_id="NP_709698.1" /db_xref="GeneID:1027782" /translation="MQVSRRQFFKICAGGMAGTTAAALGFAPSVALAETRQYKLLRTR ETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVNRGALCPKGAGLVDFI HSESRLKFPEYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYIAQNAEGVTVNRWLS TGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV DIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTAAVADYYAPIR SGTDIAFLSGVLLYLLNNEKFNHEYTEAYTNASLIVREDYGFEDGLFTGYDAEKRKYD KSSWTYELDENGFAKRDTTLQHPRCVWNLLKQHVSRYTPDVVENICGTPKDAFLKVCE YIAETSAHDKTASFLYALGWTQHSVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN IQGLTDLGLLSQSLPGYMTLPSEKQTDLQTYLTANTPKPLLEGQVNYWGNYPKFFVSM MKAFFGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKEGKVNGYICQGFNPVASFPNK NKVIGCLSKLKFLVTIDPLNTETSNFWQNHGELNEVDSSKIQTEVFRLPSTCFAEENG SIVNSGRWLQWHWKGADAPGIALTDGEILSGIFLRLRKMYAEQGGANPDQVLNMTWNY AIPHEPKSEEVAMESNGKALADITDPATGAVIVKKGQQLSSFAQLRDDGTTSCGCWIF AGSWTPEGNQMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQL LKWDGTKWTGWDIPDYSAAPPGSGVGPFIMQQEGMGRLFALDKMAEGPFPEHYEPFET PLGTNPLHPNVISNPAARIFKDDAEALGKADKFPYVGTTYRLTEHFHYWTKHALLNAI LQPEQFVEIGESLANKLGIAQGDTVKVSSNRGYIKAKAVVTKRIRTLKANGKDIDTIG IPIHWGYEGVAKKGFIANTLTPFVGDANTQTPEFKSFLVNVEKV" misc_feature complement(4098187..4101228) /gene="fdoG" /locus_tag="SF3970" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:447860" misc_feature complement(order(4100515..4100520,4100956..4100958, 4101061..4101063,4101073..4101078,4101082..4101084)) /gene="fdoG" /locus_tag="SF3970" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:239153" misc_feature complement(order(4099285..4099287,4099381..4099383, 4099471..4099473,4099480..4099488,4099546..4099548, 4099558..4099566,4099888..4099893,4099987..4099992, 4099999..4100007,4100392..4100394,4100398..4100400, 4100449..4100457,4100524..4100529,4100536..4100538, 4100542..4100544,4100644..4100646,4100656..4100658, 4100950..4100952)) /gene="fdoG" /locus_tag="SF3970" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:239153" gene 4101425..4102258 /gene="fdhD" /locus_tag="SF3971" /db_xref="GeneID:1026226" CDS 4101425..4102258 /gene="fdhD" /locus_tag="SF3971" /note="Code: C; COG: COG1526" /codon_start=1 /transl_table=11 /product="formate dehydrogenase accessory protein" /protein_id="NP_709699.1" /db_xref="GeneID:1026226" /translation="MKKTQRKEIENVTNITGVRQIELWRRDDLQHPRLDEVAEEVPVA LVYNGISHVVMMASPKDLEYFALGFSLSEGIIESPRDIFGMDVVPSCNGLEVQIELSS RRFMGLKERRRALAGRTGCGVCGVEQLNDIGKPVQPLPFTQTFDLNKLDDALRHLNDF QPVGRLTGCTHAAAWMLPSGELVGGHEDVGRHVALDKLLGRRSQEGESWQQGAVLVSS RASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATVYTHPQRLS N" misc_feature 4101458..4102246 /gene="fdhD" /locus_tag="SF3971" /note="formate dehydrogenase accessory sulfurtransferase FdhD; Region: PRK00724" /db_xref="CDD:234823" mobile_element complement(4102315..4103082) /mobile_element_type="insertion sequence:IS1" gene complement(4102330..4102725) /gene="insB" /locus_tag="SF3972" /db_xref="GeneID:1025237" CDS complement(4102330..4102725) /gene="insB" /locus_tag="SF3972" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709700.1" /db_xref="GeneID:1025237" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(4102333..4102722) /gene="insB" /locus_tag="SF3972" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4102752..4103027) /gene="insA" /locus_tag="SF3973" /db_xref="GeneID:1027775" CDS complement(4102752..4103027) /gene="insA" /locus_tag="SF3973" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709701.1" /db_xref="GeneID:1027775" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPDTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<4102755..4103006) /gene="insA" /locus_tag="SF3973" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(4103061..4103711) /gene="frvR" /locus_tag="SF3974" /pseudo /db_xref="GeneID:1027399" misc_feature complement(4103061..4103711) /gene="frvR" /locus_tag="SF3974" /note="Similar to Escherichia coli K12 frv operon regulatory protein gi: 1790331 (583 aa). BLAST with identity of 99% in 209 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(4103711..4104781) /gene="frvX" /locus_tag="SF3975" /db_xref="GeneID:1027763" CDS complement(4103711..4104781) /gene="frvX" /locus_tag="SF3975" /note="Code: G; COG: COG1363" /codon_start=1 /transl_table=11 /product="peptidase" /protein_id="NP_709702.2" /db_xref="GeneID:1027763" /translation="MNIELLQQLCEASAVSGDEQEVRDILINTLEPCVNEITFDGLGS FVARKGNKGPKVAVVGHMDEVGFMVTHIDESGFLRFTTIGGWWNQSMLNHRVTIRTHK GVKIPGVIGFVAPHALTEKQRQQPLSFDEMFIDIGANSRDEVEKRGVAMGDFISPEAN FACWGEDKVVGKALDNRIGCAMMAELLQTVNNPEITLYGVGSVEEEVGLRGAQTSAEH IKPDVVIVLDTAVAGDVPGIDNIKYPLKLGQGPGLMLFDKRYFPNQKLVAALKNCAAH NDLPLQFSTMKTGATDGGRYNVMGGGRPVVALCLPTRYLHANSGMISKADYDALLTLI RGFLTTLTAEKVNAFSQFRQVD" misc_feature complement(4103714..4104781) /gene="frvX" /locus_tag="SF3975" /note="aminopeptidase; Region: PRK09864" /db_xref="CDD:182122" misc_feature complement(order(4103819..4103821,4103825..4103827, 4103831..4103833,4103840..4103845,4103888..4103893, 4103927..4103929,4103969..4103971,4104008..4104010, 4104017..4104019,4104035..4104043,4104128..4104133, 4104140..4104145,4104152..4104154,4104272..4104274, 4104278..4104280,4104290..4104292,4104296..4104298, 4104326..4104331,4104371..4104379,4104383..4104385, 4104455..4104457,4104461..4104466,4104497..4104508, 4104515..4104517,4104539..4104541,4104551..4104553, 4104572..4104580,4104653..4104655,4104662..4104667, 4104701..4104703,4104713..4104715,4104728..4104736)) /gene="frvX" /locus_tag="SF3975" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:349906" misc_feature complement(order(4103834..4103839,4103912..4103917, 4103924..4103926,4104089..4104100,4104155..4104157, 4104164..4104169,4104257..4104259,4104599..4104601)) /gene="frvX" /locus_tag="SF3975" /note="active site" /db_xref="CDD:349906" gene complement(4104771..4106222) /gene="frvB" /locus_tag="SF3976" /db_xref="GeneID:1026659" CDS complement(4104771..4106222) /gene="frvB" /locus_tag="SF3976" /note="Code: G; COG: COG1299" /codon_start=1 /transl_table=11 /product="PTS system transporter subunits IIBC" /protein_id="NP_709703.2" /db_xref="GeneID:1026659" /translation="MESSLRIVAITNCPAGIAHTYMVAEALEQKARSLGHTIKVETQG SSGVENRLSSEEIAAADYVILATGRGLSGDDRARFAGKKVYEIAISLALKNIDQIFSE LPTNSQLFAADSGVKLGKQEVQSGSVMSHLMAGVSAALPFVIGGGILVALANMLVQFG LPYTDMSKGAPSFTWVVESIGYLGFTFMIPIMGAYIASSIADKPAFAPAFLVCYLAND KALLGTQSGAGFLGAVVLGLAIGYFVFWFRKVRLGKALQPLLGSMLIPFVTLLVFGVL TYYVIGPVMSDLMGGLLHFLNTIPPSMKFAAAFLVGAMLAFDMGGPINKTAWFFCFSL LEKHIYDWYAIVGVVALMPPVAAGLATFIAPKLFTRQEKEAASSAIVVGATVATEPAI PYALAAPLPMITANTLAGGITGVLVIAFGIKRLAPGLGIFDPLIGLMSPVGSFYLVLA IGLALNISFIIVLKGLWLRRKAKAAQQELVHEH" misc_feature complement(4104774..4106219) /gene="frvB" /locus_tag="SF3976" /note="PTS fructose-like transporter subunit IIBC; Region: PRK11404" /db_xref="CDD:183120" gene complement(4106233..4106679) /gene="frvA" /locus_tag="SF3977" /db_xref="GeneID:1027498" CDS complement(4106233..4106679) /gene="frvA" /locus_tag="SF3977" /note="Code: GT; COG: COG1762" /codon_start=1 /transl_table=11 /product="PTS system fructose-family transporter subunit IIA" /protein_id="NP_709704.1" /db_xref="GeneID:1027498" /translation="MAALTASCIDLNIQGNGAYSVLKQLATIALQNGFITDSHQFLQT LLLREKMHSTGFGSGVAVPHGKSACVKQPFVLFARKAQAIDWKASDGEDVNCWICLGV PQSGEEDQVKIIGTLCRKIIHQEFIHQLQQGDTDQVLALLNQTLSS" misc_feature complement(4106236..4106679) /gene="frvA" /locus_tag="SF3977" /note="PTS fructose transporter subunit IIA; Region: PRK09913" /db_xref="CDD:182141" misc_feature complement(order(4106488..4106490,4106536..4106538)) /gene="frvA" /locus_tag="SF3977" /note="active site" /db_xref="CDD:238129" misc_feature complement(4106488..4106490) /gene="frvA" /locus_tag="SF3977" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238129" gene complement(4106980..4107294) /gene="yiiL" /locus_tag="SF3978" /db_xref="GeneID:1026922" CDS complement(4106980..4107294) /gene="yiiL" /locus_tag="SF3978" /note="Code: S; COG: COG3254" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709705.1" /db_xref="GeneID:1026922" /translation="MIRKAFVMQVNPDAHEEYQRRHNPIWPELEAVLKSHGVHNYAIY LDKARNLLFAMVEIESEERWNAVASTDVCQRWWKYMTDVMPANPDNSPVSSELQEVFY LP" misc_feature complement(4106983..4107288) /gene="yiiL" /locus_tag="SF3978" /note="L-rhamnose mutarotase; Region: YiiL_rotase; TIGR02625" /db_xref="CDD:131674" gene complement(4107304..4108128) /gene="rhaD" /locus_tag="SF3979" /pseudogene="unknown" /db_xref="GeneID:1026569" gene complement(4108370..4109629) /gene="rhaA" /locus_tag="SF3980" /db_xref="GeneID:1027769" CDS complement(4108370..4109629) /gene="rhaA" /locus_tag="SF3980" /codon_start=1 /transl_table=11 /product="L-rhamnose isomerase" /protein_id="NP_709707.2" /db_xref="GeneID:1027769" /translation="MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDD VSGFENPEGSLTGGIQATGNYPGKARNASELRADLEQAMRLIPGPKRLNLHAIYLESD TPVSRDQIKPEHFKNWVEWAKANQLGLDFNPSCFSHPLSADGFTLSHPDDSIRQFWID HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLAALDEVISEKLNP AHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAA MLYVPQLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHDLFDRVHIGLDFFDASINR IAAWVIGTRNMKKALLRALLEPTAELRKLEAAGDYTARLALLEEQKSLPRQAVWEMYC QHHDTPAGSEWLESVRAYEKAILSQRG" misc_feature complement(4108373..4109629) /gene="rhaA" /locus_tag="SF3980" /note="L-rhamnose isomerase; Provisional; Region: PRK01076" /db_xref="CDD:179217" gene complement(4109626..4111095) /gene="rhaB" /locus_tag="SF3981" /db_xref="GeneID:1025156" CDS complement(4109626..4111095) /gene="rhaB" /locus_tag="SF3981" /note="Code: G; COG: COG1070" /codon_start=1 /transl_table=11 /product="rhamnulokinase" /protein_id="NP_709708.1" /db_xref="GeneID:1025156" /translation="MTFRNCVAVDLGASSGRVMLARYERECRSLTLREIHRFNNGLHS QNGYVTWDVDSLESAIRLGLNKVCEEGIRIDSIGIDTWGVDFVLLDQQGQRVGLPVAY RDSRTNGLMPQAQQQLGKRDIYQRSGIQFLPFNTLYQLRALTEQQPELIPHIAHALLM PDYFSYRLTGKMNWEYTNATTTQLVNINSDDWDESLLAWSGANKAWFGRPTHPGNVIG HWICPQGNEIPVVAVASHDTASAVIASPLNGSRAAYLSSGTWSLMGFESQTPFTNDTA LAANITNEGGAEGRYRVLKNIMGLWLLQRVLQERQINDLPALIAATQALPACRFIINP NDDRFINPDEMCSEIQAACRETAQPIPGSDAELARCIFDSLALLYADVLHELAQLRGE DFSQLHIVGGGCQNTLLNQLCADACGIRVIAGPVEASTLGNIGIELMTLDELNNVDDF RQVVSTTANLTTFTPNPDSEIAHYVAQIHSTRQTKELCA" misc_feature complement(4109629..4111041) /gene="rhaB" /locus_tag="SF3981" /note="rhamnulokinase; Provisional; Region: rhaB; PRK10640" /db_xref="CDD:182609" gene 4111383..4112219 /gene="rhaS" /locus_tag="SF3982" /db_xref="GeneID:1027382" CDS 4111383..4112219 /gene="rhaS" /locus_tag="SF3982" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="transcriptional activator RhaS" /protein_id="NP_709709.1" /db_xref="GeneID:1027382" /translation="MTVLHSVDFFPSCNASVAIEPRLPQADFPEHHHDFHEIVIVEHG TGIHVFNGQPYTITGGTVCFVRDHDRHLYEHTDNLCLTNVLYRSPDRFQFLAGLNQLL PQELDGQYPSHWRVNHSVLQQVRQLVAQMEQQEGENDLPSTASREILFMQLLLLLRKS SLQENLENSASRLNLLLAWLEDHFADEVNWDAVADQFSLSLRTLHRQLKQQTGLTPQR YLNRLRLMKARHLLRHSEASVTDIAYRCGFSDSNHFSTLFRREFNWSPRDIRQGRDGF LQ" misc_feature 4111383..4112216 /gene="rhaS" /locus_tag="SF3982" /note="HTH-type transcriptional activator RhaS; Region: PRK13503" /db_xref="CDD:184094" gene 4112203..4113141 /gene="rhaR" /locus_tag="SF3983" /db_xref="GeneID:1025872" CDS 4112203..4113141 /gene="rhaR" /locus_tag="SF3983" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="transcriptional activator RhaR" /protein_id="NP_709710.2" /db_xref="GeneID:1025872" /translation="MAFCNNANLLNVFVRHIANNQLRSLAEVATVAHQLKLLKDDFFA SDQQAVAVADRYPQDVFAEHTHDFCELVIVWRGNGLHVLNDRPYRITRGDLFYIHADD KHSYASVNDLVLQNIIYCPERLKLNLDWQGAIPGFSASAGQPHWRLGSVGMAQARQVI GQLEHESSQHVPFANEMAELLFGQLVMLLNRHRYTSDSLPPTSSETLLDKLITRLAAS LKSPFALDKFCDEASCSERVLRQQFRQQTGMTINQYLRQVRVCHAQYLLQHSRLLISD ISTECGFEDSNYFSVVFTRETGMTPSQWRHLNSQKD" misc_feature 4112203..4113138 /gene="rhaR" /locus_tag="SF3983" /note="HTH-type transcriptional activator RhaR; Region: PRK13500" /db_xref="CDD:184091" gene complement(4113138..4114172) /locus_tag="SF3984" /pseudogene="unknown" /db_xref="GeneID:1025508" gene 4114457..4115077 /gene="sodA" /locus_tag="SF3985" /db_xref="GeneID:1027762" CDS 4114457..4115077 /gene="sodA" /locus_tag="SF3985" /note="Code: P; COG: COG0605" /codon_start=1 /transl_table=11 /product="superoxide dismutase" /protein_id="NP_709712.2" /db_xref="GeneID:1027762" /translation="MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALE SLPEFANLPVEELITKLDQLPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA IERDFGSVDNFKAEFEKAAASRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGAS GFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK" misc_feature 4114457..4115074 /gene="sodA" /locus_tag="SF3985" /note="superoxide dismutase [Mn]; Region: PRK10925" /db_xref="CDD:182843" gene 4115337..4116320 /gene="kdgT" /locus_tag="SF3986" /db_xref="GeneID:1026571" CDS 4115337..4116320 /gene="kdgT" /locus_tag="SF3986" /codon_start=1 /transl_table=11 /product="2-keto-3-deoxygluconate permease" /protein_id="NP_709713.2" /db_xref="GeneID:1026571" /translation="MQIKRSIEKIPGGMMLVPLFLGALCHTFSPGAGKYFGSFTNGMI TGTVPILAVWFFCMGASIKLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEHGVE VGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEEAGAFVLMSLESGPLMTMIILGT AGIASFEPHVFVGAVLPFLVGFALGNLDPELREFFSKAVQTLIPFFAFALGNTIDLTV IAQTGLLGILLGVAVIIVTGIPLIIADKLIGGGDGTAGIAASSSAGAAVATPVLIAEM VPAFKPMAPAATSLVATAVIVTSILVPILTSIWSRKVKARAAKIEILGTVK" misc_feature 4115337..4116299 /gene="kdgT" /locus_tag="SF3986" /note="2-keto-3-deoxygluconate permease; Provisional; Region: PRK05274" /db_xref="CDD:235384" mobile_element complement(4116339..4117669) /mobile_element_type="insertion sequence:IS2" gene complement(4116350..4117255) /locus_tag="SF3987" /db_xref="GeneID:1026351" CDS complement(4116350..4117255) /locus_tag="SF3987" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_709714.1" /db_xref="GeneID:1026351" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(4116353..4117255) /locus_tag="SF3987" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(4117213..4117623) /locus_tag="SF3988" /db_xref="GeneID:1026737" CDS complement(4117213..4117623) /locus_tag="SF3988" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_709715.3" /db_xref="GeneID:1026737" /translation="MIVLILVFRLVIGVQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(4117216..4117578) /locus_tag="SF3988" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 4117805..4118479 /gene="yiiM" /locus_tag="SF3989" /db_xref="GeneID:1025127" CDS 4117805..4118479 /gene="yiiM" /locus_tag="SF3989" /note="Code: S; COG: COG2258" /codon_start=1 /transl_table=11 /product="6-N-hydroxylaminopurine resistance protein" /protein_id="NP_709716.2" /db_xref="GeneID:1025127" /translation="MRYPVDVYTGKIQAYPEGKPSAIAKIQVDGELMLTELGLEGDEQ AEKKVHGGPDRALCHYPREHYLYWVREFPEQAELFVAPAFGENLSTDGLTESNVHMGD IFRWGEALIQVSQPRSPCYKLNYHFDISDIAQLMQNTGKVGWLYSVIAPGKVSADAPL ELVSRVSDVTVQEAAAIAWHMPFDDDQYHRLLSAAGLSKSWTRTMQKRRLSGKIEDFS RRLWGK" misc_feature 4117805..4118473 /gene="yiiM" /locus_tag="SF3989" /note="6-N-hydroxylaminopurine resistance protein; Provisional; Region: PRK11536" /db_xref="CDD:183182" gene complement(4118585..4119958) /gene="cpxA" /locus_tag="SF3990" /db_xref="GeneID:1026805" CDS complement(4118585..4119958) /gene="cpxA" /locus_tag="SF3990" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="two-component sensor protein" /protein_id="NP_709717.1" /db_xref="GeneID:1026805" /translation="MIGSLTARIFAIFWLTLVLVLMLVLMLPKLDSRQMTELLDSEQR QGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTTEGRVIGAERSEM QIIRNFIGQADNADHPQKKKYGRVELVGPFSVRDGEDNYQLYLIRPASSSQSDFINLL FDRPLLLLIVTMLVSTPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEF LAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRSGESKELER IETEAQRLDSMINDLLVMSRNQQKNALVSETIKANQLWSEVLDNAAFEAEQMGKSLTV NFPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFAVDKDGITITVDDDGPGVS PEDREQIFRPFYRTDEARDRESGGTGLGLAIVETAIQQHRGWVKAEDSPLGGLRLVIW LPLYKRS" misc_feature complement(4118588..4119958) /gene="cpxA" /locus_tag="SF3990" /note="envelope stress sensor histidine kinase CpxA; Region: cpxA; PRK09470" /db_xref="CDD:236532" gene complement(4119955..4120653) /gene="cpxR" /locus_tag="SF3991" /db_xref="GeneID:1026856" CDS complement(4119955..4120653) /gene="cpxR" /locus_tag="SF3991" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator CpxR" /protein_id="NP_709718.1" /db_xref="GeneID:1026856" /translation="MNKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDDS IDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPF NDRELVARIRAILRRSHWSEQQQNNDNGSPTLEVDALVLNPGRQEASFDGQTLELTGT EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPDRKDGHPWF KTLRGRGYLMVSAS" misc_feature complement(4119958..4120653) /gene="cpxR" /locus_tag="SF3991" /note="envelope stress response regulator transcription factor CpxR; Region: PRK10955" /db_xref="CDD:182864" gene 4120800..4121303 /locus_tag="SF3992" /db_xref="GeneID:1025233" CDS 4120800..4121303 /locus_tag="SF3992" /note="Code: S; COG: COG3678" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709719.5" /db_xref="GeneID:1025233" /translation="MMRIVTAAVMASTLAVSSLSHAAEVGSGDNWHPGEELTQRSTQS HMFDGISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVTAENFDENAVRAQAEK MANEQIARQVEMAKVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVTQWQKSSSLKLLS SSNSRSQ" misc_feature 4120803..4121300 /locus_tag="SF3992" /note="cell-envelope stress modulator CpxP; Region: cpxP; PRK10363" /db_xref="CDD:182410" misc_feature order(4121034..4121036,4121046..4121048,4121055..4121060, 4121070..4121072,4121076..4121078,4121088..4121090, 4121097..4121099,4121109..4121111,4121121..4121123, 4121133..4121135,4121142..4121147,4121154..4121156, 4121163..4121165,4121196..4121201,4121208..4121210) /locus_tag="SF3992" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:197366" gene 4121451..4122353 /gene="fieF" /locus_tag="SF3993" /db_xref="GeneID:1025401" CDS 4121451..4122353 /gene="fieF" /locus_tag="SF3993" /note="Code: P; COG: COG0053" /codon_start=1 /transl_table=11 /product="ferrous iron efflux protein F" /protein_id="NP_709720.2" /db_xref="GeneID:1025401" /translation="MNQSYGRLVSRAAIAATAMASLLLLIKIFAWWYTGSVSILAALV DSLVDIGASLTNLLVVRYSLQPADDNHSFGHGKAESLAALAQSMFISGSALFLFLTGI QHLVSPTPMTDPGVGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMM NGAILLALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDEERQEI IDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDSLPLVQAHMVADQVEQAILRRFP GSDVIIHQDPCSVVPREGKRSMLS" misc_feature 4121451..4122347 /gene="fieF" /locus_tag="SF3993" /note="CDF family cation-efflux pump FieF; Region: fieF; PRK09509" /db_xref="CDD:181919" gene 4122552..4123496 /gene="pfkA" /locus_tag="SF3994" /db_xref="GeneID:1026924" CDS 4122552..4123496 /gene="pfkA" /locus_tag="SF3994" /note="Code: G; COG: COG0205" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase" /protein_id="NP_709721.2" /db_xref="GeneID:1026924" /translation="MLTSGGDAPGMNAAIRGVVRSALTEGLEVMGIYDGYLGLYEDRM VQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIGGDGSYM GAMRLTEMGFPCIGLPGTIDNDIKGTDYTIGFFTALSTVVEAIDRLRDTSSSHQRISV VEVMGRYCGDLTLAAAIAGGCEFVVVPEVEFSREDLVNEIKAGIAKGKKHAIVAITEH MCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLLLAGYGG RCVGIQNEQLVHHDIIDAIENMKRPFKGDWLDCAKKLY" misc_feature 4122555..4123490 /gene="pfkA" /locus_tag="SF3994" /note="ATP-dependent 6-phosphofructokinase; Region: PRK03202" /db_xref="CDD:235111" misc_feature order(4122567..4122569,4122657..4122659,4122750..4122752, 4122843..4122851,4122855..4122860,4122909..4122911, 4122915..4122917,4122921..4122923,4123041..4123049, 4123200..4123202,4123281..4123283,4123290..4123292) /gene="pfkA" /locus_tag="SF3994" /note="active site" /db_xref="CDD:238388" misc_feature order(4122567..4122569,4122657..4122659,4122750..4122752, 4122843..4122851,4122855..4122860) /gene="pfkA" /locus_tag="SF3994" /note="ADP/pyrophosphate binding site [chemical binding]; other site" /db_xref="CDD:238388" misc_feature order(4122597..4122599,4122609..4122611,4122696..4122698, 4122711..4122713,4122720..4122722,4122939..4122941, 4122975..4122977,4122987..4122989,4122996..4122998, 4123080..4123085,4123089..4123091,4123173..4123175, 4123317..4123322,4123332..4123334,4123353..4123355, 4123398..4123400,4123485..4123493) /gene="pfkA" /locus_tag="SF3994" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238388" misc_feature order(4122597..4122599,4122609..4122611,4122696..4122701, 4122708..4122713,4122996..4122998,4123089..4123091, 4123095..4123097,4123167..4123169,4123173..4123181) /gene="pfkA" /locus_tag="SF3994" /note="allosteric effector site [active]" /db_xref="CDD:238388" misc_feature order(4122909..4122911,4122915..4122917,4122921..4122923, 4123020..4123022,4123041..4123049,4123200..4123202, 4123263..4123265,4123281..4123283,4123290..4123292) /gene="pfkA" /locus_tag="SF3994" /note="fructose-1,6-bisphosphate binding site; other site" /db_xref="CDD:238388" gene 4123816..4124805 /gene="sbp" /locus_tag="SF3995" /db_xref="GeneID:1025163" CDS 4123816..4124805 /gene="sbp" /locus_tag="SF3995" /note="Code: P; COG: COG1613" /codon_start=1 /transl_table=11 /product="sulfate transporter subunit" /protein_id="NP_709722.1" /db_xref="GeneID:1025163" /translation="MNKWGVGLTFLLAATSVMAKDIQLLNVSYDPTRELYEQYNKAFS AHWKQQTGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKEWI KRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAW GYALHHNNNDQAKAQDFVRALYKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLA ANELGKDKFEIVTPSESILAEPTVSVVDKVVEKKGTKEVAEAYLKYLYSPEGQEIAAK NYYRPRDAEVAKKYENAFPKLKLFTIDEEFGGWTKAQKEHFANGGTFDQISKR" misc_feature 4123816..4124802 /gene="sbp" /locus_tag="SF3995" /note="sulfate ABC transporter substrate-binding protein; Region: PRK10752" /db_xref="CDD:182700" misc_feature order(4123900..4123908,4123999..4124007,4124062..4124064, 4124260..4124268,4124386..4124391,4124446..4124448) /gene="sbp" /locus_tag="SF3995" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270226" gene 4124912..4125667 /gene="cdh" /locus_tag="SF3996" /db_xref="GeneID:1025482" CDS 4124912..4125667 /gene="cdh" /locus_tag="SF3996" /note="Code: I; COG: COG2134" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol pyrophosphatase" /protein_id="NP_709723.2" /db_xref="GeneID:1025482" /translation="MKKAGLLFLVMIVIAVVAAGIGYWKLTGEESDTLRKIVLEECLP NQQQNQNPSPCAEVKPNAGYVVLKDLNGPLQYLLMPTYRINGTESPLLTDPSTPNFFW LAWQARDFMSKKYGQPVPDRAVSLAINSRTGHTQNHFHIHISCIRPDVREQLDKNLAN ISSRWLPLPGGLRGHEYLARRVTESELVQRSPFMMLAEEVPEAREHMGSYGLAMVRQS DNSFVLLATQRNLLTLNRASAEEIQDHECEILR" misc_feature 4124912..4125664 /gene="cdh" /locus_tag="SF3996" /note="CDP-diacylglycerol diphosphatase, bacterial type; Region: cdh; TIGR00672" /db_xref="CDD:129755" gene complement(4125722..4126489) /gene="tpiA" /locus_tag="SF3997" /db_xref="GeneID:1025379" CDS complement(4125722..4126489) /gene="tpiA" /locus_tag="SF3997" /note="Code: G; COG: COG0149" /codon_start=1 /transl_table=11 /product="triosephosphate isomerase" /protein_id="NP_709724.1" /db_xref="GeneID:1025379" /translation="MRHPLVMGNWKLNGSRHMVHELVSNLRKELAGVAGCAVAIAPPE MYIDMAKREAEGSHIMLGAQNVDLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYH KESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFE GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNA AELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA" misc_feature complement(4125737..4126486) /gene="tpiA" /locus_tag="SF3997" /note="triosephosphate isomerase; Provisional; Region: tpiA; PRK00042" /db_xref="CDD:234589" misc_feature complement(order(4125788..4125793,4125797..4125799, 4125854..4125856,4125971..4125973,4125989..4125991, 4126205..4126207,4126457..4126459,4126463..4126465)) /gene="tpiA" /locus_tag="SF3997" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238190" misc_feature complement(order(4126196..4126201,4126232..4126237, 4126244..4126246,4126298..4126300,4126337..4126339, 4126346..4126348,4126352..4126360,4126454..4126456, 4126463..4126465)) /gene="tpiA" /locus_tag="SF3997" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238190" misc_feature complement(order(4125989..4125991,4126205..4126207, 4126457..4126459)) /gene="tpiA" /locus_tag="SF3997" /note="catalytic triad [active]" /db_xref="CDD:238190" gene complement(4126597..4127196) /gene="yiiQ" /locus_tag="SF3998" /db_xref="GeneID:1025517" CDS complement(4126597..4127196) /gene="yiiQ" /locus_tag="SF3998" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709725.1" /db_xref="GeneID:1025517" /translation="MKPGCTLFFLLCSALTVTTTAHAQTPDTATTAPYLLAGAPTFDL SISQFREDFNSQNPSLPLNEFRAIDSSPDKANLTRAASKINENLYASTALERGTLKIK SIQMTWLPIQGPEQKAAKAKAQEYMAAVIRTLTPLMTKTQSQKKLQSLLTAGKNKRYY TETEGALRYVVADNGEKGLTFAVEPIKLALSESLEGLNK" misc_feature complement(4126621..4127169) /gene="yiiQ" /locus_tag="SF3998" /note="Protein of unknown function (DUF1454); Region: DUF1454; pfam07305" /db_xref="CDD:429398" gene 4127297..4127737 /gene="yiiR" /locus_tag="SF3999" /pseudo /db_xref="GeneID:1026978" misc_feature 4127297..4127737 /gene="yiiR" /locus_tag="SF3999" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790355 (147 aa). BLAST with identity of 99% in 147 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene 4127949..4128248 /gene="yiiS" /locus_tag="SF4000" /db_xref="GeneID:1025363" CDS 4127949..4128248 /gene="yiiS" /locus_tag="SF4000" /note="Code: S; COG: COG3691" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709726.1" /db_xref="GeneID:1025363" /translation="MKDVVDKCSTKGCAIDIGTVIDNDNCTSKFSRFFATREEAESFM TKLKELAAAASSADEGASVAYKIKDLEGQVELDAAFTFSCQAEMIIFELSLRSLA" misc_feature 4127949..4128245 /gene="yiiS" /locus_tag="SF4000" /note="DUF406 domain-containing protein; Region: PRK09981" /db_xref="CDD:182180" gene 4128275..4128703 /gene="yiiT" /locus_tag="SF4001" /db_xref="GeneID:1026972" CDS 4128275..4128703 /gene="yiiT" /locus_tag="SF4001" /note="Code: T; COG: COG0589" /codon_start=1 /transl_table=11 /product="universal stress protein UspD" /protein_id="NP_709727.1" /db_xref="GeneID:1026972" /translation="MAYKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLS ELYPGIYFPATEDILQLLKNKSDNKLYKLTKNIQWPKTKLRIERGEMPETLLEIMQKE QCDLLVCGHHHSFINRLMPAYRGMINKMSADLLIVPFIDK" misc_feature 4128275..4128700 /gene="yiiT" /locus_tag="SF4001" /note="universal stress protein UspD; Provisional; Region: PRK09982" /db_xref="CDD:137627" gene complement(4128708..4129454) /gene="fpr" /locus_tag="SF4002" /db_xref="GeneID:1023471" CDS complement(4128708..4129454) /gene="fpr" /locus_tag="SF4002" /note="Code: C; COG: COG1018" /codon_start=1 /transl_table=11 /product="ferredoxin-NADP reductase" /protein_id="NP_709728.1" /db_xref="GeneID:1023471" /translation="MADWVTGKVTKVQNWTDALFSLTVHAPVLPFTAGQFTKLGLEID GERVQRAYSYVNSPDNPDLEFYLVTVPDGKLSPRLAALKPGDEVQVVSEAAGFFVLDE VPDCETLWMLATGTAIGPYLSILQLGKDLDRFKNLVLVHAARYAADLSYLPLMQELEK RYEGKLRIQTVVSRETAAGSLTGRIPALIESGELESAIGLPMNKETSHVMLCGNPQMV RDTQQLLKETRQMTKHLRRRPGHMTAEHYW" misc_feature complement(4128711..4129454) /gene="fpr" /locus_tag="SF4002" /note="ferredoxin-NADP reductase; Provisional; Region: PRK10926" /db_xref="CDD:182844" gene complement(4129551..4130561) /gene="glpX" /locus_tag="SF4003" /db_xref="GeneID:1027784" CDS complement(4129551..4130561) /gene="glpX" /locus_tag="SF4003" /note="Code: G; COG: COG1494" /codon_start=1 /transl_table=11 /product="fructose 1,6-bisphosphatase II" /protein_id="NP_709729.1" /db_xref="GeneID:1027784" /translation="MRRELAIEFSRVTESAALAGYKWLGRGDKNTADGAAVNAMRIML NQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGRGDAVDIAVDPIEGTRMTAMGQANALA VLAVGDKGCFLNAPDMYMEKLIVGPGAKGTIDLNLPLADNLRNVAAALGKPLSELTVT ILAKPRHDAVIAEMQQLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSA AVIRALDGDMNGRLLARHDVKGDNEENRRIGEQELARCKAMGIEAGKVLRLGDMARSD NVIFSATGITKGDLLEGISRKGNIATTETLLIRGKSRTIRRIQSIHYLDRKDPEMQVH IL" misc_feature complement(4129596..4130558) /gene="glpX" /locus_tag="SF4003" /note="fructose-1,6-bisphosphatase, class II; Region: glpX; TIGR00330" /db_xref="CDD:129430" misc_feature complement(order(4129923..4129925,4129998..4130000, 4130295..4130309,4130391..4130396,4130463..4130465)) /gene="glpX" /locus_tag="SF4003" /note="putative active site [active]" /db_xref="CDD:238774" gene complement(4130791..4132149) /gene="glpK" /locus_tag="SF4004" /db_xref="GeneID:1025411" CDS complement(4130791..4132149) /gene="glpK" /locus_tag="SF4004" /note="Code: C; COG: COG0554" /codon_start=1 /transl_table=11 /product="glycerol kinase" /protein_id="NP_709730.1" /db_xref="GeneID:1025411" /translation="MEIWATQSSTLVEVLAKADISSDQIAAIGITNQRETTIVWEKET GKPIYNAIVWQCRRTAEICEHLKRDGLEDYIRSNTGLVLDPYFSGTKVKWILDHVEGS HERARRGELLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHTLDWDDKMLEVLDI PREMLPEVRRSSEVYGQTNIGGKGGTRIPISGIAGDQQAALFGQLCVKEGMAKNTYGT GCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAVFMAGASIQWLRDEMKLIND AYDSEYFATKVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNANHIIRATLES IAYQTRDVLEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTAL GAAYLAGLAVGFWQNLDELQEKAVIEREFRPGIETTERNYRYAGWKKAVKRAMAWEEH DE" misc_feature complement(4130806..4132149) /gene="glpK" /locus_tag="SF4004" /note="glycerol kinase GlpK; Region: glpK; PRK00047" /db_xref="CDD:234594" gene complement(4132321..4133166) /locus_tag="SF4005" /pseudogene="unknown" /db_xref="GeneID:1027677" gene 4133592..4133837 /gene="yiiU" /locus_tag="SF4006" /db_xref="GeneID:1027362" CDS 4133592..4133837 /gene="yiiU" /locus_tag="SF4006" /note="Code: S; COG: COG3074" /codon_start=1 /transl_table=11 /product="septal ring assembly protein ZapB" /protein_id="NP_709732.2" /db_xref="GeneID:1027362" /translation="MTMSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ NAQHQREELERENNHLKEQQNGWQERLQALLGRMEEV" misc_feature 4133598..4133834 /gene="yiiU" /locus_tag="SF4006" /note="septal ring assembly protein ZapB; Provisional; Region: PRK15422" /db_xref="CDD:185320" gene complement(4133922..4134407) /gene="menG" /locus_tag="SF4007" /db_xref="GeneID:1026926" CDS complement(4133922..4134407) /gene="menG" /locus_tag="SF4007" /note="Code: H; COG: COG0684" /codon_start=1 /transl_table=11 /product="ribonuclease activity regulator protein RraA" /protein_id="NP_709733.1" /db_xref="GeneID:1026926" /translation="MKYDTSELCDIYQEDVNVVEPLFSNFGGRASFGGQIITVKCFED NGLLYDLLEQNGRGRVLVVDGGGSVRRALVDAELARLAVQNEWEGLVIYGAVRQVDDL EELDIGIQAMAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI E" misc_feature complement(4133931..4134407) /gene="menG" /locus_tag="SF4007" /note="ribonuclease E inhibitor RraA; Region: PRK09372" /db_xref="CDD:236487" gene complement(4134500..4135426) /gene="menA" /locus_tag="SF4008" /db_xref="GeneID:1026750" CDS complement(4134500..4135426) /gene="menA" /locus_tag="SF4008" /note="Code: H; COG: COG1575" /codon_start=1 /transl_table=11 /product="1,4-dihydroxy-2-naphthoate polyprenyltransferase" /protein_id="NP_709734.2" /db_xref="GeneID:1026750" /translation="MTEQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGHFDPL VALLALITAGLLQILSNLANDYGDAVKGSDKPDRIGPLRGMQKGVITQQKMKRALIIT VVLICLSGLALVAVACHTLADFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVLV FFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLVV RLGEVNARRYHACLLMGSLVCLALFNLFSLHSLWGWLFLLAAPLLVKQARYVMREMDP VAMRPMLERTVKGALLTNLLFVLGIFLSQWAA" misc_feature complement(4134527..4135378) /gene="menA" /locus_tag="SF4008" /note="1,4-dihydroxy-2-naphthoate octaprenyltransferase; Region: menA; TIGR00751" /db_xref="CDD:129834" gene complement(4135493..4136824) /gene="hslU" /locus_tag="SF4009" /db_xref="GeneID:1025162" CDS complement(4135493..4136824) /gene="hslU" /locus_tag="SF4009" /note="Code: O; COG: COG1220" /codon_start=1 /transl_table=11 /product="ATP-dependent protease ATP-binding subunit HslU" /protein_id="NP_709735.1" /db_xref="GeneID:1025162" /translation="MSEMTPREIVSELDKHIIGQDNAKRSVAIALRNRWRRMQLNEEL RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD LTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQTEQQQEPSAARQAFR KKLREGQLDDKEIEIDLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKARKLKI KDAMKLLIEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGESSGPDVSREG VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQIAKPSDLIPELQGRLPIRVELQA LTTSDFERILTEPNASITVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNESTENIGA RRLHTVLERLMEEISYDASDLSGQNITIDADYVSKHLDALVADEDLSRFIL" misc_feature complement(4135496..4136824) /gene="hslU" /locus_tag="SF4009" /note="ATP-dependent protease ATPase subunit HslU; Region: hslU; PRK05201" /db_xref="CDD:235364" gene complement(4136834..4137364) /gene="hslV" /locus_tag="SF4010" /db_xref="GeneID:1026583" CDS complement(4136834..4137364) /gene="hslV" /locus_tag="SF4010" /note="Code: O; COG: COG0638" /codon_start=1 /transl_table=11 /product="ATP-dependent protease subunit HslV" /protein_id="NP_709736.1" /db_xref="GeneID:1026583" /translation="MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI AGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADET ASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDIC IYTNHFHTIEELSYKA" misc_feature complement(4136849..4137364) /gene="hslV" /locus_tag="SF4010" /note="ATP-dependent protease subunit HslV; Region: PRK05456" /db_xref="CDD:235477" misc_feature complement(order(4136990..4136992,4137263..4137265, 4137305..4137307,4137311..4137313,4137359..4137361)) /gene="hslV" /locus_tag="SF4010" /note="active site" /db_xref="CDD:238894" misc_feature complement(order(4136882..4136884,4136888..4136893, 4136900..4136902,4136912..4136914,4136945..4136947, 4136969..4136971,4136978..4136983,4137020..4137022, 4137032..4137034,4137113..4137115,4137284..4137292)) /gene="hslV" /locus_tag="SF4010" /note="HslU subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:238894" gene complement(4137457..4138416) /gene="ftsN" /locus_tag="SF4011" /db_xref="GeneID:1026727" CDS complement(4137457..4138416) /gene="ftsN" /locus_tag="SF4011" /note="Code: D; COG: COG3087" /codon_start=1 /transl_table=11 /product="essential cell division protein FtsN" /protein_id="NP_709737.1" /db_xref="GeneID:1026727" /translation="MAQRDYVRRSQPAPSRRKKSTSRKKQRNLPAVSPAMVAIAAAVL VTFIGGLYFITHHKKEESETLQSQKVTGNGLPPKPEERWRYIKELESRQPGVRAPTEP SAGGEVKTPEQLTPEQRQLLEQMQADMRQQPTQLVEVPWNEQTPEQRQQTLQRQRQAQ QLAEQQRLAQQSRTTEQSWQQQTRTSQAAPVQAQPRQSKPASTQQPYQDLLQTPAHTT AQSKPQQAAPVARAADAPKPTAEKKDERRWMVQCGSFRGAEQAETVRAQLAFEGFDSK ITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG" misc_feature complement(4137460..4138416) /gene="ftsN" /locus_tag="SF4011" /note="cell division protein FtsN; Region: PRK10927" /db_xref="CDD:236797" gene complement(4138508..4139533) /gene="cytR" /locus_tag="SF4012" /db_xref="GeneID:1024402" CDS complement(4138508..4139533) /gene="cytR" /locus_tag="SF4012" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator CytR" /protein_id="NP_709738.2" /db_xref="GeneID:1024402" /translation="MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRV EKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAANHGYLVLI GDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVD PQYIARGDFTFEAGSKAMQQLLDLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLS IIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHVGSGSRLMDCELIIR GSTRALP" misc_feature complement(4138511..4139437) /gene="cytR" /locus_tag="SF4012" /note="DNA-binding transcriptional regulator CytR; Provisional; Region: PRK11041" /db_xref="CDD:182923" gene complement(4139689..4141887) /gene="priA" /locus_tag="SF4013" /db_xref="GeneID:1025783" CDS complement(4139689..4141887) /gene="priA" /locus_tag="SF4013" /note="Code: L; COG: COG1198" /codon_start=1 /transl_table=11 /product="primosome assembly protein PriA" /protein_id="NP_709739.2" /db_xref="GeneID:1025783" /translation="MPVAHVALPVPLPRTFDYLLPEGMTVKAGCRVRVPFGKQQERIG IVVSVSDASELPLTELKAVVEVLDGEPVFTHSVWRLLLWAADYYHHPIGDVLFHALPI LLRQGRPAANAPMWYWFATEQGQAVDLNSLKRSPKQQQALAALRQGKIWRDQVATLEF NDAALQALRKKGLCDLASETPEFSDWRTNYAVSGERLRLNTEQATAVGAIHSAADTFS AWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVL HSGLNDSERLSAWLKAKNGEAAIVIGTRSALFTPFKNLGVIVIDEEHDSSYKQQEGWR YHARDLAVYRAHSEQIPIILGSATPALETLCNVQQKKYRLLRLTRRAGNARPAIQHVL DLKGQKVQAGLAPALITRMRQHLQANNQVILFLNRRGFAPALLCHDCGWIAECPRCDH YYTLHQAQQHLRCHHCDSQRPVPRQCPSCGSTHLVPVGLGTEQLEQTLAPLFPDVPIS RIDRDTTSRKGALEQQLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA DFRSAERFAQLYTQVAGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAE RRMMQLPPWTSHVIVRAEDHNNQHAPLFLQQLRNLILSSPLADDKLWVLGPVPALAPK RGGRWRWQILLQHPSRVRLQHIISGTLALINTIPDSRKVKWVLDVDPIEG" misc_feature complement(4139695..4141887) /gene="priA" /locus_tag="SF4013" /note="Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]; Region: PriA; COG1198" /db_xref="CDD:440811" gene 4142090..4142302 /gene="rpmE" /locus_tag="SF4014" /db_xref="GeneID:1025467" CDS 4142090..4142302 /gene="rpmE" /locus_tag="SF4014" /note="Code: J; COG: COG0254" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L31" /protein_id="NP_709740.1" /db_xref="GeneID:1025467" /translation="MKKDIHPKYEEITASCSCGNVIKIRSTVGHDLNLDVCSKCHPFF TGKQRDVATGGRVDRFNKRFNIPGSK" misc_feature 4142090..4142299 /gene="rpmE" /locus_tag="SF4014" /note="50S ribosomal protein L31; Reviewed; Region: rpmE; PRK00019" /db_xref="CDD:234576" gene complement(4142363..4142971) /gene="yiiX" /locus_tag="SF4015" /db_xref="GeneID:1025100" CDS complement(4142363..4142971) /gene="yiiX" /locus_tag="SF4015" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709741.1" /db_xref="GeneID:1025100" /translation="MKNRLLILSLLVSVPAFAWQPQTGDIIFQISRSSQSKAIQLATH SDYSHTGMLVMRNKKPYVFEAVGPVKYTPLKQWIAHGEKGNYVVRRVEGGLSVEQQQK LTQTAKRYLGKPYDFSFSWSDDRQYCSEVVWKVYQNALGMRVGEQQKLKEFDLSNPLV QAKLKERYGKNIPLEETVVSPQAVFDAPQLTTVAKEWPLFSW" misc_feature complement(4142381..4142971) /gene="yiiX" /locus_tag="SF4015" /note="YiiX family permuted papain-like enzyme; Region: PRK10030" /db_xref="CDD:236642" gene complement(4143155..4143472) /gene="metJ" /locus_tag="SF4016" /db_xref="GeneID:1025431" CDS complement(4143155..4143472) /gene="metJ" /locus_tag="SF4016" /note="Code: EK; COG: COG3060" /codon_start=1 /transl_table=11 /product="transcriptional repressor protein MetJ" /protein_id="NP_709742.2" /db_xref="GeneID:1025431" /translation="MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRR QVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMREMGINPET WEY" misc_feature complement(4143158..4143472) /gene="metJ" /locus_tag="SF4016" /note="met regulon transcriptional regulator MetJ; Region: PRK05264" /db_xref="CDD:179982" misc_feature complement(order(4143260..4143262,4143275..4143283, 4143287..4143292,4143296..4143301,4143308..4143310, 4143353..4143355,4143362..4143367,4143371..4143376, 4143380..4143415,4143434..4143436,4143440..4143445)) /gene="metJ" /locus_tag="SF4016" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119402" misc_feature complement(order(4143308..4143316,4143350..4143352, 4143389..4143391,4143395..4143409,4143419..4143421)) /gene="metJ" /locus_tag="SF4016" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:119402" misc_feature complement(order(4143257..4143262,4143269..4143271, 4143275..4143283,4143287..4143295,4143302..4143304, 4143341..4143346,4143353..4143355)) /gene="metJ" /locus_tag="SF4016" /note="corepressor binding sites [active]" /db_xref="CDD:119402" gene 4143749..4144909 /gene="metB" /locus_tag="SF4017" /db_xref="GeneID:1025177" CDS 4143749..4144909 /gene="metB" /locus_tag="SF4017" /note="Code: E; COG: COG0626" /codon_start=1 /transl_table=11 /product="cystathionine gamma-synthase" /protein_id="NP_709743.2" /db_xref="GeneID:1025177" /translation="MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAH DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYG GSYRLFDSLAKRGCYRVLFVDQGDEQALRAALAEKPKLVLVESPSNPLLRVVDIAKIC HLAREVGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV VTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLY HPSLPENQGHEIAARQQKGFGAMLSFELDGDEQTLCRFLGGLSLFTLAESLGGVESLI SHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAANKG" misc_feature 4143749..4144906 /gene="metB" /locus_tag="SF4017" /note="cystathionine gamma-synthase; Provisional; Region: PRK08045" /db_xref="CDD:169194" misc_feature order(4143833..4143844,4143848..4143853,4143884..4143886, 4143890..4143892,4143968..4143973,4143977..4143982, 4144049..4144051,4144064..4144066,4144073..4144075, 4144337..4144339,4144361..4144363,4144367..4144369, 4144418..4144420,4144448..4144450,4144454..4144459, 4144694..4144696) /gene="metB" /locus_tag="SF4017" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99738" misc_feature order(4143971..4143979,4144049..4144051,4144178..4144180, 4144265..4144267,4144331..4144333,4144337..4144342, 4144367..4144369) /gene="metB" /locus_tag="SF4017" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:99738" misc_feature order(4143971..4143979,4144049..4144051,4144265..4144267, 4144274..4144276,4144331..4144333,4144337..4144342) /gene="metB" /locus_tag="SF4017" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature 4144340..4144342 /gene="metB" /locus_tag="SF4017" /note="catalytic residue [active]" /db_xref="CDD:99738" gene 4144912..4147344 /gene="metL" /locus_tag="SF4018" /db_xref="GeneID:1025530" CDS 4144912..4147344 /gene="metL" /locus_tag="SF4018" /codon_start=1 /transl_table=11 /product="bifunctional aspartate kinase II/homoserine dehydrogenase II" /protein_id="NP_709744.1" /db_xref="GeneID:1025530" /translation="MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEFSQPDDM MVVSAAGSTTNQLINWLKLSQTDRLSAHQVQQTLRRYQCDLISGLLPAEEADSLISAF VSDLERLAALLDSGINDAVYAEVVGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE RAAQPQVDEGLSYPLLQQLLVQHPSKRLVVTGFISRNNAGETVLLGRNGSDYSATQIG ALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPV SGSEIDLQLRCSYTPDQGSTRIERVLASGTGARIVTSHDDVCLIEFQVPASQDFKLAH KEIDQILKRAQVRPLAVGVHNDRQLLQFCYTSEVADSALKILDEAGLPGELRLRQGLA LVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSDDGISLVAVLRTGPTESLIQGLHQ SVFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYD GLDASRALAFFNDEAVEQDEESLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGF HVISANKLAGASDSNKYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTIL SISGIFSGTLSWLFLQFDGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAR EAGYNIEPDQVRVESLVPAHCEGGSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVA RFDANGKARVGVEAVREDYPLASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGA IQSDINRLAQLL" misc_feature 4144912..4147341 /gene="metL" /locus_tag="SF4018" /note="bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional; Region: metL; PRK09466" /db_xref="CDD:236530" gene 4147693..4148583 /gene="metF" /locus_tag="SF4019" /db_xref="GeneID:1027371" CDS 4147693..4148583 /gene="metF" /locus_tag="SF4019" /note="Code: E; COG: COG0685" /codon_start=1 /transl_table=11 /product="5,10-methylenetetrahydrofolate reductase" /protein_id="NP_709745.1" /db_xref="GeneID:1027371" /translation="MSFFHASQRDALNQSLAEVQGQINVSFEFFPPRTSEMEQTLWNS IDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTI ARDYWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEVADFDISVAAYPEVHPEAK SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFK QAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYT LNRAEMSYAICHTLGVRPGL" misc_feature 4147693..4148580 /gene="metF" /locus_tag="SF4019" /note="methylenetetrahydrofolate reductase; Region: metF; PRK09432" /db_xref="CDD:181852" misc_feature order(4147870..4147872,4147954..4147956,4148041..4148049, 4148083..4148088,4148140..4148142,4148146..4148148, 4148158..4148160,4148164..4148166,4148185..4148187, 4148194..4148196,4148203..4148208,4148233..4148235, 4148239..4148241,4148515..4148517) /gene="metF" /locus_tag="SF4019" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:238299" gene 4148912..4151092 /gene="katG" /locus_tag="SF4020" /db_xref="GeneID:1026927" CDS 4148912..4151092 /gene="katG" /locus_tag="SF4020" /note="Code: P; COG: COG0376" /codon_start=1 /transl_table=11 /product="catalase/hydroperoxidase HPI(I)" /protein_id="NP_709746.2" /db_xref="GeneID:1026927" /translation="MSTSDDIHNTTATGKCPFHQGGHDQSAGAGTTTRDWWPNQLRVD LLNQHSNRSNPLGEDFDYRKEFSKLDYYGLKKDLKALLTESQPWWPADWGSYAGLFIR MAWHGAGTYRSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWA DLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLG ATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAG PTSNVGPDPEAAPIEEQGLGWASTYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLF KYEWVQTRSPAGAIQFEAVDAPEIIPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRR FLNDPQAFNEAFARAWFKLTHRDMGPKSRYIGPEVPKEDLIWQDPLPQPIYNPTEQDI IDLKFAIADSGLSVSELVSVAWASASTFRGGDKRGGANGARLALMPQRDWDVNAAAVR ALPVLEKIQKESGKASLADIIVLAGVVGVEKAASAAGLSIHVPFAPGRVDARQDQTDI EMFELLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTALVGGMRVLGAYFD GSKNGVFTDRVGVLSNDFFVNLLDMRYEWKATDESKELFEGRDRETGEVKYTASRADL VFGSNSVLRAVAEVYASSDAHEKFVKDFVAAWVKVMNLDRFDLL" misc_feature 4148942..4151086 /gene="katG" /locus_tag="SF4020" /note="catalase/peroxidase; Region: PRK15061" /db_xref="CDD:237891" misc_feature order(4149203..4149208,4149212..4149217,4149224..4149226, 4149590..4149598,4149656..4149658,4149695..4149700, 4149707..4149712,4149716..4149733,4150031..4150033, 4150037..4150039,4150121..4150123,4150133..4150135) /gene="katG" /locus_tag="SF4020" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:173823" gene 4151153..4152091 /locus_tag="SF4021" /db_xref="GeneID:1024641" CDS 4151153..4152091 /locus_tag="SF4021" /note="Code: GER; COG: COG0697" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709747.1" /db_xref="GeneID:1024641" /translation="MSTGKLHTGSLMSAAGKSNPLAISGLVVLTLIWSYSWIFMKQVT SYIGAFDFTALRCIFGALVLFIVLLLRGRGMRPTPFKYTLAIALLQTCGMVGLAQWAL VSGGAGKVAILSYTMPFWVVIFAALFLGERLRRGQYFAILIAAFGLFLVLQPWQLDFS SMKSAMLAILSGVSWGASAIVAKRLYARHPRVDLLSLTSWQMLYAALVMSVVALLVPQ REIDWQPTVFWALAYSAILATALAWSLWLFVLKNLPASIASLSTLAVPVCGVLFSWWL LGENPGAVEGSGIVLIVLALALVSRKKKEAVSVKSI" misc_feature 4151207..4152064 /locus_tag="SF4021" /note="Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:440461" gene complement(4152118..4152725) /gene="yijF" /locus_tag="SF4022" /pseudo /db_xref="GeneID:1026812" misc_feature complement(4152118..4152725) /gene="yijF" /locus_tag="SF4022" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790380 (206 aa). BLAST with identity of 95% in 202 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(4153000..4154140) /gene="gldA" /locus_tag="SF4023" /pseudo /db_xref="GeneID:1023486" misc_feature complement(4153000..4154140) /gene="gldA" /locus_tag="SF4023" /note="'Similar to Escherichia coli K12 glycerol dehydrogenase, (NAD) gi: 1790381 (381 aa). BLAST with identity of 97% in 380 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct.'" /pseudo gene complement(4154112..4154774) /locus_tag="SF4024" /pseudogene="unknown" /db_xref="GeneID:1025464" gene complement(4154786..4156921) /gene="ptsA" /locus_tag="SF4025" /pseudo /db_xref="GeneID:1024171" misc_feature complement(4154786..4156921) /gene="ptsA" /locus_tag="SF4025" /note="Similar to Escherichia coli K12 PEP-protein phosphotransferase system enzyme I gi: 1790383 (712 aa). BLAST with identity of 97% in 711 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 4157596..4158675 /gene="frwC" /locus_tag="SF4026" /db_xref="GeneID:1027761" CDS 4157596..4158675 /gene="frwC" /locus_tag="SF4026" /note="Code: G; COG: COG1299" /codon_start=1 /transl_table=11 /product="PTS system fructose-like transporter subunit IIC" /protein_id="NP_709749.2" /db_xref="GeneID:1027761" /translation="MNELVQILKNTRQHLMTGVSHMIPFVVSGGILLAVSVMLYGKGA VPDAVADPNLKKLFDIGVAGLTLMVPFLAAYIGYSIAERSALAPCAIGAWVGNSFGAG FFGALIAGIIGGIVVHYLKKIPVHKVLRSVMPIFIIPIIGTLITAGIMMWGLGEPVGA LTNSLTQWLQGMQQGSIVMLAVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVAI AAVGICIPPLGMGLATLIGRKNFSAEERETGKAALVMGCVGVTEGAIPFAAADPLRVI PSIMVGSVCGAVTAALVGAQCYAGWGGLIVLPVVEGKLGYIAAVAVGAVVTAVCVNVL KSLARKNGSSTDEKEDDLDLDFEIN" misc_feature 4157596..4158672 /gene="frwC" /locus_tag="SF4026" /note="PTS fructose transporter subunit EIIC; Region: PRK10478" /db_xref="CDD:182490" gene 4158690..4159010 /gene="frwB" /locus_tag="SF4027" /db_xref="GeneID:1026574" CDS 4158690..4159010 /gene="frwB" /locus_tag="SF4027" /note="Code: G; COG: COG1445" /codon_start=1 /transl_table=11 /product="PTS system fructose-like transporter subunit IIB" /protein_id="NP_709750.1" /db_xref="GeneID:1026574" /translation="MTKIIAVTACPSGVAHTYMAAEALESAAKAKGWEVKVETQGSIG LENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMSKIEAHL AQTA" misc_feature 4158696..4158989 /gene="frwB" /locus_tag="SF4027" /note="Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]; Region: FrwB; COG1445" /db_xref="CDD:441054" gene 4159061..4161358 /gene="pflD" /locus_tag="SF4028" /db_xref="GeneID:1023357" CDS 4159061..4161358 /gene="pflD" /locus_tag="SF4028" /note="Code: C; COG: COG1882" /codon_start=1 /transl_table=11 /product="formate acetyltransferase 2" /protein_id="NP_709751.1" /db_xref="GeneID:1023357" /translation="MTNRISRLKTALFANTREISLERALLYTASHRQTEGEPVILRRA KATAYILEHVEISIRDEELIAGNRTVKPRAGIMSPEMDPYWLLKELDQFPTRPQDRFA ISEEDKRIYREELFPYWEKRSMKDFINGQMTDEVKAATNTQIFSINQTDKGQGHIIID YPRLLNHGLGELVAQMQQHCQQQPENHFYQAALLLLEASQKHILRYAELAETMAANCT DAQRREELLTIAEISRHNAQHKPQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYM LPFYQASLTQGEDPAFLKELLESLWVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLT ENGRSAVNVLSFLCLDAYQSVQLPQPNLGVRTNALIDTPFLMKTAETIRLGTGIPQIF NDEVVVPAFLNRGVSLEDARDYSVVGCVELSIPGRTYGLHDIAMFNLLKVMEICLHEN EGNAALTYEGLLEQIRAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGR DITDGGARYNFSGVQGIGIANLSDSLHALKGMVFEQQRLSFDELLSVLKANFATPEGE KVRARLINRFEKYGNDIDEVDNISAELLRHYCKEVEKYQNPRGGYFTPGSYTVSAHVP LGSVVGATPDGRFAGEQLADGGLSPMLGQDAQGPTAVLKSVSKLDNTLLSNGTLLNVK FTPATLEGEAGLRKLADFLRVFTQLKLQHIQFNVVNADTLREAQQRPQDYAGLVVRVA GYSAFFVELSKEIQDDIIRRTAHQL" misc_feature 4159061..4161355 /gene="pflD" /locus_tag="SF4028" /note="putative formate acetyltransferase 2; Provisional; Region: pflD; PRK09983" /db_xref="CDD:182181" gene 4161324..4162202 /gene="pflC" /locus_tag="SF4029" /db_xref="GeneID:1023491" CDS 4161324..4162202 /gene="pflC" /locus_tag="SF4029" /note="Code: O; COG: COG1180" /codon_start=1 /transl_table=11 /product="[formate-C-acetyltransferase]-activating enzyme" /protein_id="NP_709752.2" /db_xref="GeneID:1023491" /translation="MTSSAGQRISCNVVETRRDDVARIFNIQRYSLNDGEGIRTVVFF KGCPHLCPWCANPESISGKIQTVRREAKCLHCAKCLRDADECPSGAFERIGRDISLDA LEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPAS KLLPLAKLCDEVLFDLKIMDATQARDVVKMNLPRVLENLRLLVSEGVNVIPRLPLIPG FTLSRENMQQALDVLIPLKIRQIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVTT MREMAERAGFQVTVGG" misc_feature order(4161462..4161464,4161468..4161470,4161474..4161476, 4161480..4161488,4161693..4161695,4161699..4161704, 4161777..4161785,4161840..4161842,4161963..4161965, 4162056..4162061) /gene="pflC" /locus_tag="SF4029" /note="FeS/SAM binding site [active]" /db_xref="CDD:100105" misc_feature 4161561..4162199 /gene="pflC" /locus_tag="SF4029" /note="pyruvate formate lyase II activase; Provisional; Region: PRK10076" /db_xref="CDD:182224" gene 4162204..4162545 /gene="frwD" /locus_tag="SF4030" /db_xref="GeneID:1026587" CDS 4162204..4162545 /gene="frwD" /locus_tag="SF4030" /note="Code: G; COG: COG1445" /codon_start=1 /transl_table=11 /product="PTS system fructose-like transporter subunit IIB" /protein_id="NP_709753.1" /db_xref="GeneID:1026587" /translation="MAYLVAVTACVSGVAHTYMAAERLEKLCQLEKWGVSIETQGALG TENRLADEDIRRADVALLITDIELAGAERFEHCRYVQCSIYAFLREPQRVMSAVRKVL SAPQQTHLILE" misc_feature 4162204..4162542 /gene="frwD" /locus_tag="SF4030" /note="PTS fructose-like transporter subunit IIB; Region: PRK10427" /db_xref="CDD:182451" misc_feature order(4162231..4162242,4162246..4162254) /gene="frwD" /locus_tag="SF4030" /note="P-loop; other site" /db_xref="CDD:99911" misc_feature order(4162231..4162233,4162237..4162242,4162249..4162254) /gene="frwD" /locus_tag="SF4030" /note="active site" /db_xref="CDD:99911" misc_feature 4162231..4162233 /gene="frwD" /locus_tag="SF4030" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99911" gene complement(4162532..4163383) /gene="yijO" /locus_tag="SF4031" /db_xref="GeneID:1027617" CDS complement(4162532..4163383) /gene="yijO" /locus_tag="SF4031" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_709754.1" /db_xref="GeneID:1027617" /translation="MYHDVSYLLSRLINGPLSLRQIYFASSNGPVPDLAYQVDFPRLE IVLEGEFVDTGAGATLVPGDVLYVAAGGWNFPQWKTPATTFSVLFGKQQLGFSVVQWD GKQYQNLAKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ IQTASRSQALFEAIRDYIDERYASALTRESVAQAFYISPNYLSHLFQKTGAIGFNEYL NHTRLEHAKTLLKGYDLKVKEVAHACGFVDSNYFCRLFRKNTEHSPSEYRRQYHSQLT EKPTTPE" misc_feature complement(4162571..>4163110) /gene="yijO" /locus_tag="SF4031" /note="DNA-binding transcriptional activator FeaR; Provisional; Region: PRK09685" /db_xref="CDD:236612" misc_feature complement(4162580..4162828) /gene="yijO" /locus_tag="SF4031" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:197666" gene complement(4163532..4165265) /gene="yijP" /locus_tag="SF4032" /db_xref="GeneID:1027787" CDS complement(4163532..4165265) /gene="yijP" /locus_tag="SF4032" /note="Code: R; COG: COG2194" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709755.2" /db_xref="GeneID:1027787" /translation="MHSTEVQAKPLSSWKALGWALLYFWFFSTLLQAIIYISGYSGTN GIRDSLLFSSLWLIPVFLFPKRIKIIAAVIGVVLWTASLAALCYYVIYGQEFSQSVLF VMFETNTNEASEYLSQYFSLKIVLIALAYTAVAVLLWTRLRPVYIPKPWRYVVSFALL YGLILHPIAMNTFIKNKPFEKTLDNLASRMEPAAPWQFLTGYYQYRQQLNSLTKLLNE NNALPPLANFKDESGNEPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPNLT VFNNVVTSRPYTIEILQQALTFANEKNPDLYLTQPSLMNMMKQAGYKTFWITNQQTMT ARNTMLTVFSRQTDKQYYMNQQRTQSAREYDTNVLKPFQDVLNDPAPKKLIIVHLLGT HIKYKYRYPENQGKFDGNTDHVPPGLSAEELESYNDYDNANLYNDHVVASLIKDFKAA DPNGFLVYFSDHGEEVYDTPPHKTQGRNEDNPTRHMYTIPFLLWTSEKWQATHPRDFS QDVDRKYSLAELIHTWSDLAGLSYDGYDPTRSVVNPQFKETTRWIGNPYKKNALIDYD TLPYGDQVGNQ" misc_feature complement(4163562..4165229) /gene="yijP" /locus_tag="SF4032" /note="phosphoethanolamine transferase CptA; Region: CptA; NF012179" /db_xref="CDD:333729" misc_feature complement(order(4163835..4163837,4163880..4163885, 4164087..4164089,4164402..4164404,4164531..4164533)) /gene="yijP" /locus_tag="SF4032" /note="putative active site [active]" /db_xref="CDD:293741" misc_feature complement(order(4163880..4163882,4164087..4164089, 4164402..4164404,4164531..4164533)) /gene="yijP" /locus_tag="SF4032" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:293741" misc_feature complement(order(4163832..4163840,4164273..4164275, 4164312..4164314)) /gene="yijP" /locus_tag="SF4032" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:293741" gene complement(4165448..4168099) /gene="ppc" /locus_tag="SF4033" /db_xref="GeneID:1025402" CDS complement(4165448..4168099) /gene="ppc" /locus_tag="SF4033" /note="Code: C; COG: COG2352" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxylase" /protein_id="NP_709756.1" /db_xref="GeneID:1025402" /translation="MNEQYSALRSNVSMLGKVLGETIKDALGEHILERVETIRKLSKS SRAGNDANRQELLTTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPE VIARTLRKLKNQPELSEDTIKKAVESLSLELVLTAHPTEITRRTLIHKMVEVNACLKQ LDNKDIADYERNQLMRRLRQLIAQSWHTDEIRKLRPSPVDEAKWGFAVVENSLWQGVP NYLRELNEQLEENLGYKLPVEFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKAT DLFLKDIQVLVSELSMVEATPELLALVGEEGAAEPYRYLMKNLRSRLMATQAWLEARL KGEELPKPEGLLTQNEELWEPLYACYQSLQACGMGIIANGDLLDTLRRVKCFGVPLVR IDIRQESTRHTEALGELTRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWQPSAE TREVLDTCQVIAEAPQGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETL DDLNNANDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIK TCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLP EITVSSLSLYTGAILEANLLPPPEPKESWRRIMDELSVISCDLYRGYVRENKDFVPYF RSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQK VVEDGKQSELEAMCRDWPFFSTRLGMLEMVFAKADLWLAEYYDQRLVDKALWPLGKEL RNLQEEDIKVVLAIANDSHLMADLPWIAESIQLRNIYTDPLNVLQAELLHRSRQAEKE GQEPDPRVEQALMVTIAGIAAGMRNTG" misc_feature complement(4165451..4168099) /gene="ppc" /locus_tag="SF4033" /note="phosphoenolpyruvate carboxylase; Reviewed; Region: PRK00009" /db_xref="CDD:234570" gene complement(4168451..4169602) /gene="argE" /locus_tag="SF4034" /db_xref="GeneID:1024160" CDS complement(4168451..4169602) /gene="argE" /locus_tag="SF4034" /note="Code: E; COG: COG0624" /codon_start=1 /transl_table=11 /product="acetylornithine deacetylase" /protein_id="NP_709757.2" /db_xref="GeneID:1024160" /translation="MKNKLPPFIEIYRALIATPSISATEEALDQSNADLITLLADWFK DLGFNVEVQPVPGTRNKFNMLASYGQGAGGLLLAGHTDTVPFDDGRWTRDPFTLTEHD GKLYGLGTADMKGFFAFILDALRDVDVTKLKKPLYILATADEETSMAGARYFAETTAL RPDCAIIGEPTSLQPVRAHKGHISNAIRIQGQSGHSSDPARGINAIELMHDAIGHILQ LRDNLKERYHYEAFTVPYPTLNLGHIHGGDASNRICACCELHMDIRPQPGMTLNELNG LLNDALAPVSERWPGRLTVDELHPPIPGYECPPNHQLVEVVEKLLGAKTEVVNYCTEA PFIQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELIIQVIHHFCWH" misc_feature complement(4168454..4169599) /gene="argE" /locus_tag="SF4034" /note="acetylornithine deacetylase; Provisional; Region: PRK05111" /db_xref="CDD:235346" gene 4169756..4170760 /gene="argC" /locus_tag="SF4035" /db_xref="GeneID:1026505" CDS 4169756..4170760 /gene="argC" /locus_tag="SF4035" /note="Code: E; COG: COG0002" /codon_start=1 /transl_table=11 /product="N-acetyl-gamma-glutamyl-phosphate reductase" /protein_id="NP_709758.1" /db_xref="GeneID:1026505" /translation="MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKL ISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATAHEVSHDLAPQFLEAGCVVFDL SGAFRVNDATFYEKYYGFTHQYPELLEQAAYGLAEWCGNKLKEANLIAVPGCYPTAAQ LALKPLIDADLLDLNQWPVINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEI ATHLGADVIFTPHLGNFPRGILETITCRLKSGVTQAQVAQALQQAYAHKPLVRLYDKG VPALKNVVGLPFCDIGFAVQGEHLIIVATEDNLLKGAAAQAVQCANIRFGYAETQSLI " misc_feature 4169759..4170757 /gene="argC" /locus_tag="SF4035" /note="N-acetyl-gamma-glutamyl-phosphate reductase, common form; Region: argC; TIGR01850" /db_xref="CDD:273832" gene 4170771..4171544 /gene="argB" /locus_tag="SF4036" /db_xref="GeneID:1025157" CDS 4170771..4171544 /gene="argB" /locus_tag="SF4036" /note="Code: E; COG: COG0548" /codon_start=1 /transl_table=11 /product="acetylglutamate kinase" /protein_id="NP_709759.2" /db_xref="GeneID:1025157" /translation="MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGG CVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQIAAVGLF LGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNA DQAATALAATLGADLILLSDVSGILDGKGQRIAEMTAAKAEQLIEQGIITDGMIVKVN AALDAARTLGRPVDIASWRYAEQLPALFNGMPMGTRILA" misc_feature 4170780..4171535 /gene="argB" /locus_tag="SF4036" /note="N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine...; Region: AAK_NAGK-NC; cd04249" /db_xref="CDD:239782" misc_feature order(4170789..4170791,4170795..4170800,4170897..4170902, 4171305..4171307,4171323..4171325,4171392..4171394, 4171398..4171400,4171416..4171418) /gene="argB" /locus_tag="SF4036" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:239782" misc_feature order(4170897..4170902,4170963..4170965,4171239..4171244, 4171248..4171250) /gene="argB" /locus_tag="SF4036" /note="N-acetyl-L-glutamate binding site [chemical binding]; other site" /db_xref="CDD:239782" gene 4171605..4172978 /gene="argH" /locus_tag="SF4037" /db_xref="GeneID:1027358" CDS 4171605..4172978 /gene="argH" /locus_tag="SF4037" /note="Code: E; COG: COG0165" /codon_start=1 /transl_table=11 /product="argininosuccinate lyase" /protein_id="NP_709760.1" /db_xref="GeneID:1027358" /translation="MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKAL VTVGVLTAEEQAQLEEALNVLLEDVRARPQQILESDAEDIHSWVEGKLIDKVGQLGKK LHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRA QPVTFAHWCLAYVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGF ASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSG SSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDT WLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAV VEAIRQGKPLEDLPLSELQKFSQVIGEDVYPILSLQSCLEKRAAKGGVSPQQVAQAIA FAQARLE" misc_feature 4171605..4172969 /gene="argH" /locus_tag="SF4037" /note="argininosuccinate lyase; Provisional; Region: PRK04833" /db_xref="CDD:179883" mobile_element 4173095..4174522 /mobile_element_type="insertion sequence:IS4" gene 4173162..4174508 /locus_tag="SF4038" /db_xref="GeneID:1024639" CDS 4173162..4174508 /locus_tag="SF4038" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_709761.1" /db_xref="GeneID:1024639" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLDPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMVLERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRVFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIEQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSNRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMRDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature 4173252..4174250 /locus_tag="SF4038" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene 4174916..4176130 /locus_tag="SF4039" /db_xref="GeneID:1027398" CDS 4174916..4176130 /locus_tag="SF4039" /note="Code: H; COG: COG1441" /codon_start=1 /transl_table=11 /product="bifunctional D-altronate/D-mannonate dehydratase" /protein_id="NP_709762.1" /db_xref="GeneID:1027398" /translation="MKIIAADVFVTCPGRNFVTLKITTESGLCGLGDATLNGRELSVA SYLKDYLCPQLIGRDASRIEDIWQFFYKGAYWRRGPVTMSAISAIDMALWDIKAKAAN MPLYQLLGGASREGVMVYCHTTGRTIDEVLEDYAKHQQMGFKAIRVQCGVPGMQTTYG LAKGKGLAYEPATKGLWPEEQLWSSEKYLDFTPKLFEAVRNKFGFNEHLLHDMHHRLT PIEAARFGKSIEDYRLFWMEDPTPAENQECFRLIRQHTVTPIAVGEVFNSIWDCKQLI EEQLIGYIRTTITHAGGITGMRRIADFASLYQVRTGSHGPSDLSPVCHAAALHFDLWV PNFGVQEYMGYSEQMLEVFPYSWRFEEGYMHPGDEPGLGISFDEKLAAKYPYDPEYLP VARLEDGTLLNW" misc_feature 4174916..4176127 /locus_tag="SF4039" /note="D-galactonate dehydratase family protein; Region: PRK15072" /db_xref="CDD:237901" misc_feature order(4175273..4175275,4175354..4175356,4175360..4175362, 4175549..4175551,4175621..4175623,4175627..4175629, 4175705..4175707,4175774..4175776,4175855..4175857, 4175936..4175938) /locus_tag="SF4039" /note="putative active site pocket [active]" /db_xref="CDD:239438" misc_feature order(4175549..4175551,4175627..4175629,4175705..4175707) /locus_tag="SF4039" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:239438" misc_feature 4176197..4178258 /note="Similar to Escherichia coli O157:H7 transport protein ref: NP_313343.1 (453 aa). BLAST with identity of 59% in 687 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element 4176563..4177330 /mobile_element_type="insertion sequence:IS1" gene 4176618..4176893 /gene="insA" /locus_tag="SF4041" /db_xref="GeneID:1026999" CDS 4176618..4176893 /gene="insA" /locus_tag="SF4041" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709763.1" /db_xref="GeneID:1026999" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 4176639..>4176890 /gene="insA" /locus_tag="SF4041" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4176920..4177315 /gene="insB" /locus_tag="SF4042" /db_xref="GeneID:1027597" CDS 4176920..4177315 /gene="insB" /locus_tag="SF4042" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709764.1" /db_xref="GeneID:1027597" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 4176923..4177312 /gene="insB" /locus_tag="SF4042" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4178306..4178415) /gene="oxyS" /locus_tag="SF4563" /db_xref="GeneID:1026285" ncRNA complement(4178306..4178415) /ncRNA_class="other" /gene="oxyS" /locus_tag="SF4563" /product="OxyS RNA" /note="regulator" /db_xref="GeneID:1026285" gene 4178511..4179428 /gene="oxyR" /locus_tag="SF4043" /db_xref="GeneID:1024220" CDS 4178511..4179428 /gene="oxyR" /locus_tag="SF4043" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator OxyR" /protein_id="NP_709765.1" /db_xref="GeneID:1024220" /translation="MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELG VMLLERTSRKVLFTQAGMLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTVG PYLLPHIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCVILALVKESEAFIEVPL FDEPMLLAIYEDHPWANRECVLMADLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTH FRATSLETLRNMVAAGSGITLLPALAVPPERKRDGVVYLPCIKPEPCRTIGLVYRPGS PLRSRYEQLAEAIRARMDGHFDKVLKQAV" misc_feature 4178511..4179425 /gene="oxyR" /locus_tag="SF4043" /note="DNA-binding transcriptional regulator OxyR; Provisional; Region: PRK11151" /db_xref="CDD:182999" gene complement(4179411..4180745) /gene="udhA" /locus_tag="SF4044" /db_xref="GeneID:1026046" CDS complement(4179411..4180745) /gene="udhA" /locus_tag="SF4044" /note="Code: C; COG: COG1249" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_709766.4" /db_xref="GeneID:1026046" /translation="MGLVKQGARVAVIERYQNVGGGCTHWGTIPSKALRHAVSRIIEF NQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQGFYERNHCEILQGNARFVDEHT LALDCPDGSVETLTAEKFVIACGSRPYHPTDVDFTHPRIYDSDSILSMHHEPRHVLIY GAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQEMSDSLSYHFWNSGVVIRHNEEY EKIESCDDGVIMHLKSGKKLKADCLLYANGRTGNTDSLALQNIGLETDSRGQLKVNSM YQTAQPHVYAVGDVIGYPSLASAAYDQGRIAAQALVKGEATAHLIEDIPTGIYTIPEI SSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMNVGTLKILFHRETKEILGIHCFG ERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTMAEAYRVAALNGLNRLF" misc_feature complement(4179414..4180745) /gene="udhA" /locus_tag="SF4044" /note="Si-specific NAD(P)(+) transhydrogenase; Region: PRK05249" /db_xref="CDD:235373" gene 4181078..4181782 /gene="yijC" /locus_tag="SF4045" /db_xref="GeneID:1026937" CDS 4181078..4181782 /gene="yijC" /locus_tag="SF4045" /note="Code: K; COG: COG1309" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor FabR" /protein_id="NP_709767.2" /db_xref="GeneID:1026937" /translation="MFILWYSASSTFGKDSDIVMGVRAQQKEKTRRSLVEAAFSQLSA ERSFASLSLREVAREAGIAPTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAK GGSVIRTSVSTFMEFIGNNPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLEL ENHMPRAFTEAQAEAMVTIVFSAGAEALDVGVEQRRQLEERLVLQLRMISKGAYYWYR REQEKTAIIPGNVKDE" misc_feature 4181135..4181734 /gene="yijC" /locus_tag="SF4045" /note="HTH-type transcriptional repressor FabR; Region: PRK11202" /db_xref="CDD:236881" gene 4181782..4182141 /gene="yijD" /locus_tag="SF4046" /db_xref="GeneID:1025224" CDS 4181782..4182141 /gene="yijD" /locus_tag="SF4046" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709768.1" /db_xref="GeneID:1025224" /translation="MKQANQDRGTLLLALVAGLSINGTFAALFSSIVPFSVFPIISLV LTVYCLHQRYLNRTMSVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIM VFWIGAKMRNRKQEVAE" misc_feature 4181782..4182138 /gene="yijD" /locus_tag="SF4046" /note="YijD family membrane protein; Region: PRK11056" /db_xref="CDD:236832" gene complement(4182181..4183281) /gene="trmA" /locus_tag="SF4047" /db_xref="GeneID:1027600" CDS complement(4182181..4183281) /gene="trmA" /locus_tag="SF4047" /note="Code: J; COG: COG2265" /codon_start=1 /transl_table=11 /product="tRNA (uracil-5-)-methyltransferase" /protein_id="NP_709769.1" /db_xref="GeneID:1027600" /translation="MTPEHLPTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHY RMRAEFRIWHDGDDLYHIIFDQQTKSRIRVDSFPAASELINQLMTAMIAGVRNNPVLR HKLFQIDYLTTLSNQAVVSLLYHKKLDDEWRQEAEALRDALRAQNLNVHLIGRATKTK IALDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELY CGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG VREFNRLQGIDLKSYQFETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLE TLSQTHKVERLALFDQFPYTHHMECGVLLTAK" misc_feature complement(4182184..4183281) /gene="trmA" /locus_tag="SF4047" /note="tRNA (uracil-5-)-methyltransferase; Validated; Region: PRK05031" /db_xref="CDD:235332" gene 4183650..4185494 /gene="btuB" /locus_tag="SF4048" /db_xref="GeneID:1025065" CDS 4183650..4185494 /gene="btuB" /locus_tag="SF4048" /note="Code: P; COG: COG1629" /codon_start=1 /transl_table=11 /product="vitamin B12/cobalamin outer membrane transporter" /protein_id="NP_709770.2" /db_xref="GeneID:1025065" /translation="MIKKASLLTACSVTAFSAWAQDTSPDTLVVTAIRFEQPRSTVLA PTTVVTRQDIDRWQSTSVNDVLRRLPGVDITQNGGSGQLSSIFIRGTNASHVLVLIDG VRLNLAGVSGSADLSQFPIALVQRIEYIRGPRSAVYGSDAIGGVVNIITTRDEPGTEI SAGWGSNSYQNYDVSTQQQLGDKTRVTLLGDYAHTHGYDVVAYGNTGTQAQTDNDGFL SKTLYGALEHNFTDAWSGFVRGYGYDNRTNYDAYYSPGSPLLDTRKLYSQSWDAGLRY NGELIKSQLITSYSHSKDYNYDPHYGRYDSSATLDEMKQYTVQWANNVIVGHGSIGAG VDWQKQTTTPGTGYVEDGYDQRNTGIYLTGLQQVGDFTFEGAARSDDNSQFGRHGTWQ TSAGWEFIEGYRFIASYGTSYKALNLGQLYGFYGNPNLDPEKSKQWEGAFEGLTAGVN WRISGYRNDVSDLIDYDDHTLKYYNEGKARIKGVEATANFDTGPLTHTVSYDYVDARN AITDTPLLRRAKQQVKYQLDWQLYDFDWGITYQYLGTRYDKDYSSYPYQTVKMGGVSL WDLAVAYPVTSHLTVRGKIANLFDKDYETVYGYQTAGREYTLSGSYTF" misc_feature 4183650..4185491 /gene="btuB" /locus_tag="SF4048" /note="TonB-dependent vitamin B12 receptor BtuB; Region: btuB; PRK10641" /db_xref="CDD:236730" misc_feature order(4183782..4183811,4183839..4183868,4183905..4183922, 4183941..4183964,4184010..4184042,4184076..4184102) /gene="btuB" /locus_tag="SF4048" /note="N-terminal plug [active]" /db_xref="CDD:238657" gene 4185508..4186296 /gene="murI" /locus_tag="SF4049" /db_xref="GeneID:1025567" CDS 4185508..4186296 /gene="murI" /locus_tag="SF4049" /note="Code: M; COG: COG0796" /codon_start=1 /transl_table=11 /product="glutamate racemase" /protein_id="NP_709771.4" /db_xref="GeneID:1025567" /translation="MLVFDSGVGGLSVYDEIRHLLPDLHYIYAFDNVAFPYGEKSEAF IVERVVAIVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVGVVPAIKPAARLT ANGIVGLLATRGTVKRSYTHELIARFANECQIEMLGSAEMVELAEAKLHGEDVSLDAL KRILRPWLRMKEPPDTVVLGCTHFPLLQEELLQVLPEGTRLVDSGAAIARRTAWLLEH EAPDAKSADANIAFCMAMTPEAEQLLPVLQRYGFETLEKLAVLG" misc_feature 4185511..4186281 /gene="murI" /locus_tag="SF4049" /note="glutamate racemase; Provisional; Region: PRK00865" /db_xref="CDD:234851" gene 4186670..4188211 /gene="rrsB" /locus_tag="SF4533" /db_xref="GeneID:1023479" rRNA 4186670..4188211 /gene="rrsB" /locus_tag="SF4533" /product="16S ribosomal RNA" /db_xref="GeneID:1023479" gene 4188297..4188372 /locus_tag="SF4534" /db_xref="GeneID:3161775" tRNA 4188297..4188372 /locus_tag="SF4534" /product="tRNA-Glu" /codon_recognized="GAA" /db_xref="GeneID:3161775" gene 4188566..4191469 /gene="rrlB" /locus_tag="SF4535" /db_xref="GeneID:1026573" rRNA 4188566..4191469 /gene="rrlB" /locus_tag="SF4535" /product="23S ribosomal RNA" /db_xref="GeneID:1026573" gene 4191564..4191682 /gene="rrfB" /locus_tag="SF4536" /db_xref="GeneID:1025075" rRNA 4191564..4191682 /gene="rrfB" /locus_tag="SF4536" /product="5S ribosomal RNA" /db_xref="GeneID:1025075" gene 4191809..4192837 /gene="murB" /locus_tag="SF4050" /db_xref="GeneID:1026958" CDS 4191809..4192837 /gene="murB" /locus_tag="SF4050" /note="Code: M; COG: COG0812" /codon_start=1 /transl_table=11 /product="UDP-N-acetylenolpyruvoylglucosamine reductase" /protein_id="NP_709772.1" /db_xref="GeneID:1026958" /translation="MNHSLKPWNTFGIDHNAQHIVCAEDEQQLLNAWQHATAEGQPVL ILGEGSNVLFLEDYRGTVIINRIKGIEIHDEPDAWYLHVGAGENWHRLVKYTLQEGMP GLENLALIPGCVGSSPIQNIGAYGVELQRVCAYVDCVELATGKQVRLTAKECRFGYRD SIFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTKL PDPKVNGNAGSFFKNPVVSAETAKALLAQFPTAPNYPQAGGSVKLAAGWLIDQCQLKG MQMGGAAVHRQQALVLINEDNAKSEDVVQLAHHVRQKVGEKFNVWLEPEVRFIGASGE VSAVETIS" misc_feature 4191809..4192795 /gene="murB" /locus_tag="SF4050" /note="UDP-N-acetylmuramate dehydrogenase; Region: murB; PRK00046" /db_xref="CDD:234593" gene 4192834..4193799 /gene="birA" /locus_tag="SF4051" /db_xref="GeneID:1023589" CDS 4192834..4193799 /gene="birA" /locus_tag="SF4051" /note="Code: H; COG: COG0340" /codon_start=1 /transl_table=11 /product="bifunctional biotin--[acetyl-CoA-carboxylase] synthetase/biotin operon repressor" /protein_id="NP_709773.1" /db_xref="GeneID:1023589" /translation="MKDNTVPLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLR DWGVDVFTVPGKGYSLPEPIQLLNAEQILGQLDGGSVAVLPVIDSTNQFLLDRIGELK SGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMFWRLEQGPAAAIGLSLVIGIVMAEV LRKLGADKVRVKWPNDLYLQDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEESV VNQGWITLQEAGINLDRNTLAAMLIRELRAALELFEQEGLAPYLSRWEKLDNFINRPV KLIIGDKEIFGISRGIDKQGALLLEQDGIIKPWMGGEISLRSAEK" misc_feature 4192837..4193793 /gene="birA" /locus_tag="SF4051" /note="bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA; Region: PRK11886" /db_xref="CDD:237010" misc_feature order(4193098..4193106,4193167..4193169,4193176..4193187, 4193194..4193205,4193227..4193235,4193347..4193349, 4193359..4193361,4193365..4193367,4193380..4193382, 4193389..4193391,4193395..4193397,4193443..4193451, 4193455..4193457) /gene="birA" /locus_tag="SF4051" /note="active site" /db_xref="CDD:319741" misc_feature 4193380..4193382 /gene="birA" /locus_tag="SF4051" /note="catalytic site [active]" /db_xref="CDD:319741" gene complement(4193828..4194754) /gene="coaA" /locus_tag="SF4052" /db_xref="GeneID:1026837" CDS complement(4193828..4194754) /gene="coaA" /locus_tag="SF4052" /note="Code: H; COG: COG1072" /codon_start=1 /transl_table=11 /product="pantothenate kinase" /protein_id="NP_709774.2" /db_xref="GeneID:1026837" /translation="MTPYLQFDRNQWAALRDSVPMTLSEDEIARLKGINEDLSLEEVA EIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQA LLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFVSDLKSGVP NVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFS IYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWL NLKQNILPTRERASLILTKSANHVVEEVRLRK" misc_feature complement(4193831..4194700) /gene="coaA" /locus_tag="SF4052" /note="pantothenate kinase, bacterial type; Region: panK_bact; TIGR00554" /db_xref="CDD:273134" misc_feature complement(order(4193858..4193860,4193870..4193872, 4194050..4194052,4194062..4194064,4194467..4194478, 4194485..4194487)) /gene="coaA" /locus_tag="SF4052" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238983" misc_feature complement(order(4193858..4193860,4194038..4194040, 4194050..4194052,4194248..4194250,4194461..4194463, 4194473..4194478)) /gene="coaA" /locus_tag="SF4052" /note="CoA-binding site [chemical binding]; other site" /db_xref="CDD:238983" misc_feature complement(order(4194182..4194184,4194473..4194475)) /gene="coaA" /locus_tag="SF4052" /note="Mg2+-binding site [ion binding]; other site" /db_xref="CDD:238983" gene 4195140..4195215 /locus_tag="SF4537" /db_xref="GeneID:3161800" tRNA 4195140..4195215 /locus_tag="SF4537" /product="tRNA-Thr" /codon_recognized="ACA" /db_xref="GeneID:3161800" gene 4195224..4195308 /locus_tag="SF4538" /db_xref="GeneID:3161820" tRNA 4195224..4195308 /locus_tag="SF4538" /product="tRNA-Tyr" /codon_recognized="UAC" /db_xref="GeneID:3161820" gene 4195425..4195499 /locus_tag="SF4539" /db_xref="GeneID:3161772" tRNA 4195425..4195499 /locus_tag="SF4539" /product="tRNA-Gly" /codon_recognized="GGA" /db_xref="GeneID:3161772" gene 4195506..4195581 /locus_tag="SF4540" /db_xref="GeneID:3161808" tRNA 4195506..4195581 /locus_tag="SF4540" /product="tRNA-Thr" /codon_recognized="ACC" /db_xref="GeneID:3161808" gene 4195696..4196880 /gene="tuf" /locus_tag="SF4053" /db_xref="GeneID:1023356" CDS 4195696..4196880 /gene="tuf" /locus_tag="SF4053" /note="Code: JE; COG: COG0050" /codon_start=1 /transl_table=11 /product="elongation factor Tu" /protein_id="NP_709775.1" /db_xref="GeneID:1023356" /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ YDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDV FSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVG VLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFR TTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKV LG" misc_feature 4195696..4196874 /gene="tuf" /locus_tag="SF4053" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:234596" gene 4197110..4197493 /gene="secE" /locus_tag="SF4054" /db_xref="GeneID:1024731" CDS 4197110..4197493 /gene="secE" /locus_tag="SF4054" /note="Code: N; COG: COG0690" /codon_start=1 /transl_table=11 /product="preprotein translocase subunit SecE" /protein_id="NP_709776.1" /db_xref="GeneID:1024731" /translation="MSANTEAQGSGRGLEAMKWVVVVALLLAAIVGNYLYRDIMLPLR ALAVVILIAAAGGVALLSTKGKATIAFAREARTEVRKVIWPTRQKTLHTTLIVAAVTA VMSLILWGLDGILVRLVSFITGLRF" misc_feature 4197206..4197481 /gene="secE" /locus_tag="SF4054" /note="preprotein translocase subunit SecE; Reviewed; Region: secE; PRK05740" /db_xref="CDD:235587" gene 4197495..4198040 /gene="nusG" /locus_tag="SF4055" /db_xref="GeneID:1025388" CDS 4197495..4198040 /gene="nusG" /locus_tag="SF4055" /note="Code: K; COG: COG0250" /codon_start=1 /transl_table=11 /product="transcription antitermination protein NusG" /protein_id="NP_709777.1" /db_xref="GeneID:1025388" /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEDLFGEVMV PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV SVSIFGRATPVELDFSQVEKA" misc_feature 4197519..4198034 /gene="nusG" /locus_tag="SF4055" /note="transcription termination/antitermination factor NusG; Region: nusG; TIGR00922" /db_xref="CDD:273341" gene 4198199..4198627 /gene="rplK" /locus_tag="SF4056" /db_xref="GeneID:1025115" CDS 4198199..4198627 /gene="rplK" /locus_tag="SF4056" /note="Code: J; COG: COG0080" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L11" /protein_id="NP_709778.1" /db_xref="GeneID:1025115" /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA KTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKIS RAQLQQIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED" misc_feature 4198199..4198624 /gene="rplK" /locus_tag="SF4056" /note="50S ribosomal protein L11; Validated; Region: rplK; PRK00140" /db_xref="CDD:234661" misc_feature order(4198226..4198228,4198286..4198288,4198421..4198429, 4198439..4198441,4198460..4198462,4198535..4198537, 4198550..4198558,4198568..4198570,4198577..4198582, 4198589..4198594,4198598..4198606) /gene="rplK" /locus_tag="SF4056" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:100101" misc_feature order(4198226..4198228,4198370..4198372,4198376..4198387, 4198397..4198399,4198403..4198408,4198538..4198543, 4198550..4198555) /gene="rplK" /locus_tag="SF4056" /note="L7/L12 interface [polypeptide binding]; other site" /db_xref="CDD:100101" misc_feature order(4198274..4198276,4198286..4198288) /gene="rplK" /locus_tag="SF4056" /note="putative thiostrepton binding site [active]" /db_xref="CDD:100101" misc_feature order(4198478..4198480,4198487..4198489) /gene="rplK" /locus_tag="SF4056" /note="L25 interface [polypeptide binding]; other site" /db_xref="CDD:100101" gene <4198665..4199336 /gene="rplA" /locus_tag="SF4057" /db_xref="GeneID:1024031" CDS <4198665..4199336 /gene="rplA" /locus_tag="SF4057" /note="truncated; Code: J; COG: COG0081" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L1" /protein_id="NP_709779.2" /db_xref="GeneID:1024031" /translation="REKVDATKQYDINEAIALLKELATAKFVESVDVAVNLGIDARKS DQNVRGATVLPHGTGRSVRVAVFTQGANAEAAKAAGAELVGMEDLADQIKKGEMNFDV VIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQVRYRNDKNGII HTTIGKVDFDADKLKENLEALLVALKKAKPTQAKGVYIKKVSISTTMGAGVAVDQAGL SASVN" misc_feature 4198665..4199309 /gene="rplA" /locus_tag="SF4057" /note="Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]; Region: RplA; COG0081" /db_xref="CDD:439851" gene 4199749..4200246 /gene="rplJ" /locus_tag="SF4058" /db_xref="GeneID:1025180" CDS 4199749..4200246 /gene="rplJ" /locus_tag="SF4058" /note="Code: J; COG: COG0244" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L10" /protein_id="NP_709780.1" /db_xref="GeneID:1025180" /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA GREAGVYMRVVRNTLLRRAVEGTPFECLKDAFVGPTLIAYSMEHPGAAARLFKEFAKA NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRD AKEAA" misc_feature 4199755..4200240 /gene="rplJ" /locus_tag="SF4058" /note="50S ribosomal protein L10; Reviewed; Region: rplJ; PRK00099" /db_xref="CDD:234632" misc_feature order(4199770..4199775,4199782..4199784,4199914..4199925, 4199932..4199934) /gene="rplJ" /locus_tag="SF4058" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:240223" misc_feature order(4200016..4200018,4200085..4200087,4200094..4200096, 4200142..4200144,4200151..4200156,4200163..4200168, 4200172..4200180,4200184..4200192,4200196..4200204, 4200211..4200216,4200220..4200225) /gene="rplJ" /locus_tag="SF4058" /note="Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site" /db_xref="CDD:240223" gene 4200313..4200678 /gene="rplL" /locus_tag="SF4059" /db_xref="GeneID:1023608" CDS 4200313..4200678 /gene="rplL" /locus_tag="SF4059" /note="Code: J; COG: COG0222" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L7/L12" /protein_id="NP_709781.1" /db_xref="GeneID:1023608" /translation="MSITKDQIIEAVAAMSVMDVVELISAMEEKFGVSAAAAVAVAAG PVEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD DAEALKKALEEAGAEVEVK" misc_feature 4200313..4200675 /gene="rplL" /locus_tag="SF4059" /note="Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]; Region: RplL; COG0222" /db_xref="CDD:439992" misc_feature order(4200319..4200321,4200358..4200366,4200373..4200378, 4200385..4200387,4200394..4200396,4200433..4200441, 4200469..4200474,4200535..4200537,4200541..4200546, 4200550..4200552,4200556..4200561,4200601..4200606, 4200610..4200612,4200619..4200621) /gene="rplL" /locus_tag="SF4059" /note="core dimer interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(4200328..4200330,4200337..4200339,4200349..4200351, 4200388..4200390,4200403..4200405) /gene="rplL" /locus_tag="SF4059" /note="peripheral dimer interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(4200370..4200372,4200379..4200384,4200394..4200396, 4200403..4200405) /gene="rplL" /locus_tag="SF4059" /note="L10 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(4200508..4200513,4200520..4200525,4200532..4200534, 4200553..4200558,4200565..4200567) /gene="rplL" /locus_tag="SF4059" /note="L11 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(4200511..4200513,4200523..4200525,4200532..4200534, 4200553..4200558,4200565..4200567) /gene="rplL" /locus_tag="SF4059" /note="putative EF-Tu interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(4200511..4200513,4200520..4200525,4200532..4200534) /gene="rplL" /locus_tag="SF4059" /note="putative EF-G interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" gene 4200998..4205026 /gene="rpoB" /locus_tag="SF4060" /db_xref="GeneID:1026967" CDS 4200998..4205026 /gene="rpoB" /locus_tag="SF4060" /note="Code: K; COG: COG0085" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit beta" /protein_id="NP_709782.2" /db_xref="GeneID:1026967" /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE QILDLFFEKVIFEIRDNKLQMELVPERLRGETASFDIEANGKVYVEKGRRITARHIRQ LEKDDVKLIEVPVEYIAGKVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIE TLFTNDLDHGPYISETLRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE DRYDLSAVGRMKFNRSLLREEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG PNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVTDEIHYLSAIEEGNYVIAQANSNLD EEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGVVQYVDASRIVIKVNEDE MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF SRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ RAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL PTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP ESFNVLLKEIRSLGINIELEDE" misc_feature 4200998..4205023 /gene="rpoB" /locus_tag="SF4060" /note="DNA-directed RNA polymerase subunit beta; Reviewed; Region: rpoB; PRK00405" /db_xref="CDD:234749" misc_feature 4203911..4204084 /gene="rpoB" /locus_tag="SF4060" /note="high mobility group (HMG)-box domain superfamily; Region: HMG-box_SF; cl00082" /db_xref="CDD:469606" gene 4205103..4209326 /gene="rpoC" /locus_tag="SF4061" /db_xref="GeneID:1026785" CDS 4205103..4209326 /gene="rpoC" /locus_tag="SF4061" /note="Code: K; COG: COG0086" /codon_start=1 /transl_table=11 /product="DNA-directed RNA polymerase subunit beta'" /protein_id="NP_709783.1" /db_xref="GeneID:1026785" /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQIL TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLT KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL GLYYMTRDCVNAKGEGMVLTGPKEAERLYRSGLASLHARVKVRITEYEKDANGELVAK TSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQI MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV IDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQL AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR RLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI LVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK LVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVANWDPHTMPVITE VSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPALKIVDAQGNDV LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE ARRPKEPAILAEISGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR KATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKASLATESFI SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEA PAAPQVTAEDASASLAELLNAGLGGSDNE" misc_feature 4205148..4209245 /gene="rpoC" /locus_tag="SF4061" /note="DNA-directed RNA polymerase subunit beta'; Provisional; Region: PRK00566" /db_xref="CDD:234794" gene complement(4209568..4210701) /gene="thiH" /locus_tag="SF4062" /db_xref="GeneID:1025696" CDS complement(4209568..4210701) /gene="thiH" /locus_tag="SF4062" /note="Code: HR; COG: COG1060" /codon_start=1 /transl_table=11 /product="thiamine biosynthesis protein ThiH" /protein_id="NP_709784.1" /db_xref="GeneID:1025696" /translation="MKTFSNRWRQLDWDDIRLRINGKTAADVERALNASQLTRDDMMA LLSPAASGYLEQLAQQAQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKR KTLDEADIARESAAIREMGFEHLLLVTGEHQAKVGMDYFRRHLPALREQFSSLQMEVQ PLAETEYAELKQLGLDGVMVYQETYHEATYTRHHLKGKKQDFFWRLETPDRLGRAGID KIGLGALIGLSDNWRVDCYMVAEHLLWLQQHYWQSRYSVSFPRLRPCTGGIEPASIMD ERQLVQTICAFRLLAPEIELSLSTRESPWFRDRVIPLAINNVSAFSKTQPGGYADNHP ELEQFSPHDDRRPEAVAAVLTAQGLQPVWKDWDSYLGRASQRL" misc_feature complement(4209595..4210695) /gene="thiH" /locus_tag="SF4062" /note="thiazole biosynthesis protein ThiH; Region: thiH; TIGR02351" /db_xref="CDD:131404" gene complement(4210698..4211543) /gene="thiG" /locus_tag="SF4063" /db_xref="GeneID:1025116" CDS complement(4210698..4211543) /gene="thiG" /locus_tag="SF4063" /note="Code: F; COG: COG2022" /codon_start=1 /transl_table=11 /product="thiamin biosynthesis protein thiazole subunit" /protein_id="NP_709785.4" /db_xref="GeneID:1025116" /translation="MSSGRNISCRMATRSCFFRLLQGVEMLRIADKTFDSHLFTGTGK FASSQLMVEAIRASGSQLVTLAMKRVDLRQHNDAILEPLIAAGVALLPNTSGAKTAEE AIFAAHLAREALGTNWLKLEIHPDARWLLPDPIETLKAAETLVQQGFVVLPYCGADPV LCKRLEEVGCAAVMPLGAPIGSNQGLETRAMLEIIIQQATVPVVVDAGIGVPSHATQA LEMGADAVLVNTAIAVADDPVNMAKAFRLAVEVGLLARQSGPGSRSYFAHATSPLTGF LEASA" misc_feature complement(4210707..4211471) /gene="thiG" /locus_tag="SF4063" /note="Thiazole synthase ThiGH, ThiG subunit (thiamin biosynthesis) [Coenzyme transport and metabolism]; Region: ThiG; COG2022" /db_xref="CDD:441625" gene complement(4211654..4212409) /gene="thiF" /locus_tag="SF4064" /db_xref="GeneID:1027596" CDS complement(4211654..4212409) /gene="thiF" /locus_tag="SF4064" /note="Code: H; COG: COG0476" /codon_start=1 /transl_table=11 /product="thiamin biosynthesis protein thiazole subunit" /protein_id="NP_709786.2" /db_xref="GeneID:1027596" /translation="MNDRDFMRYSRQILLDDIALDGQQKLLDSQVLIIGLGGLGTPAA LYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDINSPKSQVSQQRLTQLNPDIQLTA LQQRLTGEALKDAVAQADVVLDCTDNMATRQEINAACVALNTPLITASAVGFGGQLMV LTPPWEQGCYRCLWPDNQQPERNCRTAGVVGPVVGVMGTLQALEAIKLLSGIETPAGE LRLFDGKSSQWRSLALRRASGCPVCGGSNADPV" misc_feature complement(4211675..4212406) /gene="thiF" /locus_tag="SF4064" /note="Molybdopterin or thiamine biosynthesis adenylyltransferase [Coenzyme transport and metabolism]; Region: ThiF; COG0476" /db_xref="CDD:440244" gene complement(4212402..4213037) /gene="thiE" /locus_tag="SF4065" /db_xref="GeneID:1027414" CDS complement(4212402..4213037) /gene="thiE" /locus_tag="SF4065" /note="Code: H; COG: COG0352" /codon_start=1 /transl_table=11 /product="thiamine-phosphate pyrophosphorylase" /protein_id="NP_709787.2" /db_xref="GeneID:1027414" /translation="MYQPDFPPVPFRLGLYPVVDSVQWIERLLDAGVRTLQLRIKDRR DEEVEADVVAAIALGRRYNARLFINDYWRLAIKHQAYGVHLGQEDLQATDLNAIRAAG LRLGVSTHDDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLEQLARHVERLADYP TVAIGGISLARAPAVIATGVGSIAVVSAITQAADWRLATAQLLEIAGVGDE" misc_feature complement(4212405..4213037) /gene="thiE" /locus_tag="SF4065" /note="thiamine phosphate synthase; Region: PRK03512" /db_xref="CDD:179586" misc_feature complement(order(4212477..4212488,4212540..4212542, 4212552..4212554,4212630..4212632,4212636..4212638, 4212657..4212659,4212663..4212665,4212714..4212716, 4212786..4212788,4212921..4212923,4212927..4212929, 4212984..4212986,4212990..4212992)) /gene="thiE" /locus_tag="SF4065" /note="thiamine phosphate binding site [chemical binding]; other site" /db_xref="CDD:238317" misc_feature complement(order(4212477..4212482,4212540..4212542, 4212627..4212632,4212636..4212638,4212714..4212716, 4212771..4212773,4212828..4212833,4212915..4212917, 4212921..4212923,4212927..4212929)) /gene="thiE" /locus_tag="SF4065" /note="active site" /db_xref="CDD:238317" misc_feature complement(order(4212627..4212629,4212714..4212716, 4212771..4212773,4212780..4212782,4212828..4212833, 4212915..4212917,4212921..4212923)) /gene="thiE" /locus_tag="SF4065" /note="pyrophosphate binding site [ion binding]; other site" /db_xref="CDD:238317" gene complement(4213037..4214932) /gene="thiC" /locus_tag="SF4066" /db_xref="GeneID:1024228" CDS complement(4213037..4214932) /gene="thiC" /locus_tag="SF4066" /note="Code: H; COG: COG0422" /codon_start=1 /transl_table=11 /product="thiamine biosynthesis protein ThiC" /protein_id="NP_709788.1" /db_xref="GeneID:1024228" /translation="MSATKLTRREQRARAQHFIDTLEGTAFPNSKRIYITGTHPGVRV PMREIQLSPTLIGGSKEQPQYEENEAIPVYDTSGPYGDPQIAINVQQGLAKLRQPWID ARADTEELTVRSSDYTRTRLADDGLDELRFSGLLTPKRAKTGRRVTQLHYARQGIITP EMEFIAIRENMGRERIRSEVLRHQHPGMSFGAHLPENITAEFVRDEVAAGRAIIPANI NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYI HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHQENFLYQHFREICEICAAYDVSLSL GDGLRPGSIQDANDEAQFAELHTLGELTKIAWEYDVQVMIEGPGHVPMQMIRRNMTEE LEHCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKE DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAAAQTIEVGMADMSENFRARGGEI YLHKEEA" misc_feature complement(4213055..4214908) /gene="thiC" /locus_tag="SF4066" /note="thiamine biosynthesis protein ThiC; Provisional; Region: PRK09284" /db_xref="CDD:236451" gene complement(4215166..4215642) /gene="yjaE" /locus_tag="SF4067" /db_xref="GeneID:1027395" CDS complement(4215166..4215642) /gene="yjaE" /locus_tag="SF4067" /note="Code: K; COG: COG3160" /codon_start=1 /transl_table=11 /product="anti-RNA polymerase sigma 70 factor" /protein_id="NP_709789.1" /db_xref="GeneID:1027395" /translation="MLNQLDNLTERVRGSNKLVDRWLHVRKHLLVAYYNLVGIKPGKE SYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLARAAKIWPQLEANTQQ IMDYYDSSLETAIDHDNYLEFQQVLSDIGEALEARFVLEDKLILLVLDAARVKHPA" misc_feature complement(4215169..4215642) /gene="yjaE" /locus_tag="SF4067" /note="Regulator of sigma D [Transcription]; Region: Rsd; COG3160" /db_xref="CDD:442394" gene 4215737..4216510 /gene="nudC" /locus_tag="SF4068" /db_xref="GeneID:1025541" CDS 4215737..4216510 /gene="nudC" /locus_tag="SF4068" /note="Code: L; COG: COG2816" /codon_start=1 /transl_table=11 /product="NADH pyrophosphatase" /protein_id="NP_709790.1" /db_xref="GeneID:1025541" /translation="MDRIIEKLDHGWWVVSHEQKLWLPKGELPYGEAANFDLVGQRAL QIGEWQGEPVWLIQQQRRHDMGSVRQVIDLDVGLFQLAGRGVQLAEFYRSHKYCGYCG HEMYPSKTEWAMLCSHCRERYYPQIAPCIIVAIRRDDSLLLAQHTRHRNGVHTVLAGF VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGDIVIDPK ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYE" misc_feature 4215737..4216492 /gene="nudC" /locus_tag="SF4068" /note="NAD(+) diphosphatase; Region: nudC; PRK00241" /db_xref="CDD:234699" gene 4216550..4217614 /gene="hemE" /locus_tag="SF4069" /db_xref="GeneID:1027590" CDS 4216550..4217614 /gene="hemE" /locus_tag="SF4069" /note="Code: H; COG: COG0407" /codon_start=1 /transl_table=11 /product="uroporphyrinogen decarboxylase" /protein_id="NP_709791.1" /db_xref="GeneID:1027590" /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAG DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTVPDAMGLGLYFEAGEGPRFTSP VTCKADVDKLPIPDPEDELGYVMNAVRTIRHELKGEVPLIGFSGSPWTLATYMVEGGS SKAFTVIKKMMYADPQALHALLDKLAKSVTLYLNAQIKAGAQAVMIFDTWGGVLTGRD YQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIA DARRRVGNKVALQGNMDPSMLYAPPARIEEEVATILAGFGHGEGHVFNLGHGIHQDVP PEHAGVFVEAVHRLSEQYHR" misc_feature 4216577..4217590 /gene="hemE" /locus_tag="SF4069" /note="Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction...; Region: URO-D; cd00717" /db_xref="CDD:238368" misc_feature order(4216625..4216642,4216655..4216657,4216667..4216669, 4216685..4216687,4216766..4216786,4216820..4216822, 4216835..4216837,4216979..4216981,4217009..4217011, 4217027..4217029,4217168..4217170,4217174..4217179, 4217291..4217293,4217528..4217530) /gene="hemE" /locus_tag="SF4069" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238368" misc_feature order(4216628..4216630,4216640..4216642,4216778..4216780, 4217009..4217011,4217174..4217176,4217528..4217530) /gene="hemE" /locus_tag="SF4069" /note="active site" /db_xref="CDD:238368" gene 4217771..4218442 /gene="nfi" /locus_tag="SF4070" /db_xref="GeneID:1027513" CDS 4217771..4218442 /gene="nfi" /locus_tag="SF4070" /note="Code: L; COG: COG1515" /codon_start=1 /transl_table=11 /product="endonuclease V" /protein_id="NP_709792.1" /db_xref="GeneID:1027513" /translation="MDLASLRAQQIELASSVICEDRLDKDPPDLIAGADVGFEQGGEV TRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQKPDLVFV DGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSSKPGALAPLMDKGEQLA WVWRSKARCNPLFIATGHRVSVDSALAWVQRCMKGYRLPEPTRWADAVASERPAFVRY TANQP" misc_feature 4217771..4218439 /gene="nfi" /locus_tag="SF4070" /note="deoxyribonuclease V; Region: PRK11617" /db_xref="CDD:236937" misc_feature order(4217873..4217875,4217879..4217884,4217987..4217989, 4217993..4218004,4218077..4218085,4218095..4218097, 4218110..4218115,4218161..4218175,4218386..4218388, 4218398..4218400) /gene="nfi" /locus_tag="SF4070" /note="Active_site [active]" /db_xref="CDD:143472" gene 4218485..4219075 /gene="yjaG" /locus_tag="SF4071" /db_xref="GeneID:1025146" CDS 4218485..4219075 /gene="yjaG" /locus_tag="SF4071" /note="Code: S; COG: COG3068" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709793.1" /db_xref="GeneID:1025146" /translation="MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCQQTGFGD GQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPSADDFDLYGVYPAIDACVALSE LVHSRLSGETLEHAVEVSKTSITTVAMLEMTQAGREMGDEELKENPAVEQEWDIQWEI FRLLAECEERDIELIKGLRADLRESGESNIGIIFQQ" misc_feature 4218488..4219060 /gene="yjaG" /locus_tag="SF4071" /note="Uncharacterized conserved protein YjaG, DUF416 family [Function unknown]; Region: YjaG; COG3068" /db_xref="CDD:442302" gene 4219262..4219534 /gene="hupA" /locus_tag="SF4072" /db_xref="GeneID:1027571" CDS 4219262..4219534 /gene="hupA" /locus_tag="SF4072" /note="Code: L; COG: COG0776" /codon_start=1 /transl_table=11 /product="transcriptional regulator HU subunit alpha" /protein_id="NP_709794.1" /db_xref="GeneID:1027571" /translation="MNKTQLIDVIAEKAELSKTQAKAALESTLAAITESLKEGDAVQL VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK" misc_feature 4219262..4219531 /gene="hupA" /locus_tag="SF4072" /note="DNA-binding protein HU-alpha; Region: PRK10753" /db_xref="CDD:138142" misc_feature order(4219277..4219279,4219286..4219291,4219298..4219300, 4219325..4219336,4219340..4219348,4219352..4219360, 4219364..4219369,4219379..4219393,4219400..4219402, 4219484..4219492,4219496..4219498,4219502..4219504, 4219514..4219519) /gene="hupA" /locus_tag="SF4072" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:259853" misc_feature order(4219418..4219420,4219424..4219429,4219433..4219435, 4219439..4219450,4219463..4219468,4219472..4219474) /gene="hupA" /locus_tag="SF4072" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:259853" gene 4219547..4220242 /gene="yjaH" /locus_tag="SF4073" /db_xref="GeneID:1027412" CDS 4219547..4220242 /gene="yjaH" /locus_tag="SF4073" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709795.2" /db_xref="GeneID:1027412" /translation="MNSFNEGVVSPLLSFWRRSLMLAGALFLTACSHNSSLPPFTASG FAEDQGAVRIWRKDSGDNVHLLAVFSPWRSGDTTTREYRWQGDNLTLININVYSKPPV NIRARFDDRGDLSFMQRESDGEKQQLSNDQIDLYRYRADQIRQISDALRQGRVVLRQG RWHAMEQTVTTCEGQTIKPDLDSQAIAHIERRQSRSSVDVSVAWLEAPEGSQLLLVAN SDFCRWQPNEKTF" misc_feature 4219670..4220227 /gene="yjaH" /locus_tag="SF4073" /note="Protein of unknown function (DUF1481); Region: DUF1481; pfam07356" /db_xref="CDD:429425" gene complement(4220244..4220810) /gene="yjaI" /locus_tag="SF4074" /db_xref="GeneID:1027536" CDS complement(4220244..4220810) /gene="yjaI" /locus_tag="SF4074" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709796.3" /db_xref="GeneID:1027536" /translation="MSKNDSLPAAGESFLLVYHARLPVISAFHRWHGRCNTRSKTTTG GLTMKRNTKIALVMMALSAMAMGSTSAFAHGGHGMWQQNAAPLTSEQQTAWQKIHNDF YAQSSALQQQLVTKRYEYNALLAANPPDSSKINAVAKEMENLRQSLDELRVKRDIAMA EAGIPRGAGMGMGYGGCGGGGHMGMGHW" misc_feature complement(4220313..4220669) /gene="yjaI" /locus_tag="SF4074" /note="zinc resistance sensor/chaperone ZraP; Region: zraP; PRK11546" /db_xref="CDD:183189" gene 4220907..4222283 /gene="hydH" /locus_tag="SF4075" /db_xref="GeneID:1027570" CDS 4220907..4222283 /gene="hydH" /locus_tag="SF4075" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="sensor protein ZraS" /protein_id="NP_709797.1" /db_xref="GeneID:1027570" /translation="MRFMQRSKDSLAKWLSAILPVVIVGLVGLFAVTVIRDYGRETAA ARQTLLEKGSVLIRALESGSRVGMGMRMHHAQQQALLEEMAGQPGVRWFAVTDEQGTI VMHSNSGMVGKQLYSPQEMQQLHPGDEEAWRRIDSADGEPVLEIYRQFQPMFAAGMYR MRHMQQYAATPQAIFIAFDASNIVSAEDREQRNTLIILFALATVLLASVLSFFWYRRY LRSRQLLQDEMKRKEKLVALGHLAAGVAHEIRNPLSSIKGLAKYFAERAPAGGEAHQL AQVMAKEADRLNRVVSELLELVKPTHLALQAVDLNTLINHSLQLVSQDANSREIQLRF TANDTLPEIQADPDRLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKG IAADQLEAIFTPYFTTKAEGTGLGLAVVHNIVEQHGGTIQVASQEGKGSTFTLWLPVN ITRKDPQG" misc_feature 4220916..4222280 /gene="hydH" /locus_tag="SF4075" /note="two-component system sensor histidine kinase ZraS; Region: PRK10364" /db_xref="CDD:236674" gene 4222280..4223605 /gene="hydG" /locus_tag="SF4076" /db_xref="GeneID:1025529" CDS 4222280..4223605 /gene="hydG" /locus_tag="SF4076" /note="Code: T; COG: COG2204" /codon_start=1 /transl_table=11 /product="transcriptional regulatory protein ZraR" /protein_id="NP_709798.1" /db_xref="GeneID:1025529" /translation="MTHDNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQ VREQVFDLVLCDVRMAEMDGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGAQD YLIKPLDFDNLQATLEKALAHTHSIDAETPAVTASQFGMVGKSPAMQHLLSEIALVAP SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAF TGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVR LIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERN RKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEYISERELPLAIASTPIP LGQSQDIQPLVEVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR" misc_feature 4222280..4223602 /gene="hydG" /locus_tag="SF4076" /note="sigma-54-dependent response regulator transcription factor ZraR; Region: PRK10365" /db_xref="CDD:182412" gene complement(4223602..4224891) /gene="purD" /locus_tag="SF4077" /db_xref="GeneID:1026801" CDS complement(4223602..4224891) /gene="purD" /locus_tag="SF4077" /note="Code: F; COG: COG0151" /codon_start=1 /transl_table=11 /product="phosphoribosylamine--glycine ligase" /protein_id="NP_709799.1" /db_xref="GeneID:1026801" /translation="MKVLVIGNGGREHALAWKAAQSPLVETVFAAPGNAGTALEPALQ NVAIGVTDIPALLDFAQNEKIDLTIVGPEAPLVKGVVDTFRAAGLKIFGPTAGAAQLE GSKAFTKDFLARHKIPTAEYQNFTEVEPALVYLREKGAPIVIKADGLAAGKGVIVAMT LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV GDKDNGPNTGGMGAYSPAPVVTDEVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVELCLAACEGKLDEKTSEWDERASLSV VMAAGGYPGDYRTGDVIHGLPLEEVADGKVFHAGTKLADDEQVVTSGGRVLCVTALGH TVAEAQKRAYALMTDIHWDDCFCRKDIGWRAIEREQN" misc_feature complement(4223614..4224891) /gene="purD" /locus_tag="SF4077" /note="Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; Region: PurD; COG0151" /db_xref="CDD:439921" gene complement(4224903..4226492) /gene="purH" /locus_tag="SF4078" /db_xref="GeneID:1023556" CDS complement(4224903..4226492) /gene="purH" /locus_tag="SF4078" /note="Code: F; COG: COG0138" /codon_start=1 /transl_table=11 /product="bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase" /protein_id="NP_709800.1" /db_xref="GeneID:1023556" /translation="MQQRRPVRRALLSVSDKAGIVEFAQALSARGVELLSTGGTARLL AEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEEHQIQPIDMVV VNLYPFAQTVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEM DDNEGSLTLATRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNL NFIKKQDMRYGENSHQQAAFYIEENVKEASVATATQVQGKALSYNNIADTDAALECVK EFAEPACVIVKHANPCGVAIGNSILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI ISRQFVEVIIAPSASEEALKITAAKQNVRVLTCGQWGERVPGLDFKRVNGGLLVQDRD LGMVGAEELRVVTQRQPTEQELRDALFCWKVAKFVKSNAIVYAKNNMTIGIGAGQMSR VYSAKIAGIKAADEGLEVKGSSMASDAFFPFRDGIDAAAAAGVTCVIQPGGSIRDDEV IAAADEHGIAMLFTDMRHFRH" misc_feature complement(4224906..4226483) /gene="purH" /locus_tag="SF4078" /note="bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional; Region: purH; PRK00881" /db_xref="CDD:234854" gene 4227108..4228649 /gene="rrsE" /locus_tag="SF4541" /db_xref="GeneID:1025161" rRNA 4227108..4228649 /gene="rrsE" /locus_tag="SF4541" /product="16S ribosomal RNA" /db_xref="GeneID:1025161" gene 4228735..4228810 /locus_tag="SF4542" /db_xref="GeneID:3161836" tRNA 4228735..4228810 /locus_tag="SF4542" /product="tRNA-Glu" /codon_recognized="GAA" /db_xref="GeneID:3161836" gene 4229004..4231907 /gene="rrlE" /locus_tag="SF4543" /db_xref="GeneID:1027512" rRNA 4229004..4231907 /gene="rrlE" /locus_tag="SF4543" /product="23S ribosomal RNA" /db_xref="GeneID:1027512" gene 4232002..4232120 /gene="rrfE" /locus_tag="SF4544" /db_xref="GeneID:1025884" rRNA 4232002..4232120 /gene="rrfE" /locus_tag="SF4544" /product="5S ribosomal RNA" /db_xref="GeneID:1025884" gene 4232127..4232762 /gene="metA" /locus_tag="SF4079" /pseudo /db_xref="GeneID:1026903" misc_feature 4232127..4232762 /gene="metA" /locus_tag="SF4079" /note="Similar to Escherichia coli K12 homoserine transsuccinylase gi: 1790443 (310 aa). BLAST with identity of 98% in 212 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene 4233031..4234632 /gene="aceB" /locus_tag="SF4080" /pseudo /db_xref="GeneID:1027356" misc_feature 4233031..4234632 /gene="aceB" /locus_tag="SF4080" /note="Similar to Escherichia coli K12 malate synthase A gi: 1790444 (534 aa). BLAST with identity of 98% in 534 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 4234662..4235966 /gene="aceA" /locus_tag="SF4081" /db_xref="GeneID:1025900" CDS 4234662..4235966 /gene="aceA" /locus_tag="SF4081" /note="Code: C; COG: COG2224" /codon_start=1 /transl_table=11 /product="isocitrate lyase" /protein_id="NP_709801.1" /db_xref="GeneID:1025900" /translation="MKTRTQQIEELQKEWTQPRWEGITRPYSAEDVVKLRGSVNPECT LAQLGAAKMWRLLHGESKKGYINNLGALTGGQALQQAKAGIEAVYLSGWQVAADANLA ASMYPDQSLYPANSVPAVVERINNTFRRADQIQWSVGIEPGDPRYVDYFLPIVADAEA GFGGVLNAFELMKAMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARL AADVTGVPTLLVARTDADAADLITSDCDPYDSEFITGERTSEGFFRTHAGIEQAISRG LAYAPYADLVWCETSTPDLELARRFAQAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIA SFQQQLSDMGYKFQFITLAGIHSMWFNMFDLANAYAQGEGMKHYVEKVQQPEFAAAKD GYTFVSHQQEVGTGYFDKVTTIIQGGTSSVTALTGSTEESQF" misc_feature 4234662..4235963 /gene="aceA" /locus_tag="SF4081" /note="isocitrate lyase; Provisional; Region: PRK15063" /db_xref="CDD:237893" gene 4236150..4237887 /gene="aceK" /locus_tag="SF4082" /pseudo /db_xref="GeneID:1026975" misc_feature 4236150..4237887 /gene="aceK" /locus_tag="SF4082" /note="Similar to Escherichia coli K12 isocitrate dehydrogenase kinase/phosphatase gi: 1790446 (579 aa). BLAST with identity of 98% in 579 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(4237856..4240040) /gene="arp" /locus_tag="SF4083" /pseudo /db_xref="GeneID:1027416" misc_feature complement(4237856..4240040) /gene="arp" /locus_tag="SF4083" /note="Similar to Escherichia coli K12 regulator of acetyl CoA synthetase gi: 1790447 (729 aa). BLAST with identity of 98% in 728 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(4240357..4241220) /gene="iclR" /locus_tag="SF4084" /db_xref="GeneID:1027413" CDS complement(4240357..4241220) /gene="iclR" /locus_tag="SF4084" /note="Code: K; COG: COG1414" /codon_start=1 /transl_table=11 /product="aceBA operon repressor" /protein_id="NP_709802.4" /db_xref="GeneID:1027413" /translation="MKIISTIQKKEAVMVAPIPAKRGRKPAVATAPATGQVQSLTRGL KLLEWIAESNGSVALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAF MVGSSFLQSRNLLAIVHPILRNLMEESGETVNMAVLDQSDHEAIIIDQVQCTHLMRMS APIGGKLPMHASGAGKAFLAQLSEEQVTKLLHRKGLHAYTHATLVSPVHLKEDLAQTR KRGYSFDDEEHALGLRCLAACMFDEHREPFAAISISGPISRITDDRVTEFGAMVIKAA KEVTLAYGGMR" misc_feature complement(4240360..4241181) /gene="iclR" /locus_tag="SF4084" /note="glyoxylate bypass operon transcriptional repressor IclR; Region: PRK11569" /db_xref="CDD:183206" gene 4241381..4245064 /gene="metH" /locus_tag="SF4085" /db_xref="GeneID:1025407" CDS 4241381..4245064 /gene="metH" /locus_tag="SF4085" /note="Code: E; COG: COG1410" /codon_start=1 /transl_table=11 /product="B12-dependent methionine synthase" /protein_id="NP_709803.2" /db_xref="GeneID:1025407" /translation="MSSKVEQLRAQLNERILVLDGGMGTMIQSYRLNEADFRGERFAD WPCDLKGNNDLLVLSKPEVIAAIHNAYFEAGADIIETNTFNSTTIAMADYQMESLSAE INFAAAKLARACADEWTARTPEKPRYVAGVLGPTNRTASISPDVNDPAFRNITFDQLA AAYRESTKALVEGGADLILIETVFDTLNAKAAVFAVKTEFEALGVELPIMISGTITDA SGRTLSGQTTEAFYNSLRHAEALTFGLNCALGPDELRQYVQELSRIAECYVTAHPNAG LPNAFGEYDLDADTMAKQIREWAQAGFLNIVGGCCGTTPQHIAAMSRAVEGLAPRKLP EIPVACRLSGLEPLNIGDDSLFVNVGERTNVTGSAKFKRLIKEEKYSEALDVARQQVE NGAQIIDINMDEGMLDAEAAMVRFLNLIAGEPDIARVPIMIDSSKWDVIEKGLKCIQG KGIVNSISMKEGVDAFIHHAKLLRRYGAAVVVMAFDEQGQADTRARKIEICRRAYKIL TEEVGFPPEDIIFDPNIFAVATGIEEHNNYAQDFIGACEDIKRELPHALISGGVSNVS FSFRGNDPVREAIHAVFLYYAIRNGMDMGIVNAGQLAIYDDLPAELRDAVEDVILNRR DDGTERLLELAEKYRGSKADDTANAQQAEWRSWDVNKRLEYSLVKGITEFIEQDTEEA RQQATRPIEVIEGPLMDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASK EQGKTNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRIAKEVNA DLIGLSGLITPSLDEMVNVAKEMERQGFAIPLLIGGATTSKAHTAVKIEQNYSGPTVY VQNASRTVGVVAALLSDTQRDDFVARTCKEYETVRIQHGRKKPRTPPVTLEAARDNDF AFDWQAYTPPVAHRLGVQEVEASIETLRNYIDWTPFFMTWSLAGKYPRILEDEVVGVE AQRLFKDANDMLDKLSAEKTLNPRGVVGLFPANRVGDDIEIYRDETRTHVINVSHHLR QQTEKTGFANYCLADFVAPKLSGKADYIGAFAVTGGLEEDALADAFEAQHDDYNKIMV KALADRLAEAFAEYLHERVRKVYWGYAPNENLSNEELIRENYQGIRPAPGYPACPEHT EKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDHA RRKGMSVSDVERWLAPNLGYDAD" misc_feature 4241381..4245049 /gene="metH" /locus_tag="SF4085" /note="B12-dependent methionine synthase; Provisional; Region: metH; PRK09490" /db_xref="CDD:236539" gene 4245284..4246915 /gene="yjbB" /locus_tag="SF4086" /db_xref="GeneID:1026979" CDS 4245284..4246915 /gene="yjbB" /locus_tag="SF4086" /note="Code: P; COG: COG1283" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709804.1" /db_xref="GeneID:1026979" /translation="MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKK PLAFCAGIGVTALVQSSNATTMLVTSFVAQDLVALAPALVIVLGADVGTALMARILTF DLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGV QVIFASLTGDILLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANL GSGLLAMLNNSAANAAARRVALGSLLFKLVGSLIILPFVHLLAETMGKLSLPKAELVI YFHVFYNLVRCLVMLPFVDPMARFCKTIIRDEPELDTQLRPKHLDVSALDTPTLALAN AARETLRIGDAMEQMMEGLNKVMHGEPRQEKELRKLADDINVLYTAIKLYLARMPKEE LAEEESRRWAEIIEMSLNLEQASDIVERMGSEIADKSLAARRAFSLDGLKELDALYEQ LLSNLKLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSL HLGLLGDMQRLNSLFCSVAYSVLEQPDEDEGRDEY" misc_feature 4245284..4246891 /gene="yjbB" /locus_tag="SF4086" /note="Na+/phosphate symporter [Inorganic ion transport and metabolism]; Region: NptA; COG1283" /db_xref="CDD:440894" gene complement(4247006..4247695) /gene="pepE" /locus_tag="SF4087" /db_xref="GeneID:1024694" CDS complement(4247006..4247695) /gene="pepE" /locus_tag="SF4087" /note="Code: E; COG: COG3340" /codon_start=1 /transl_table=11 /product="(alpha)-aspartyl dipeptidase" /protein_id="NP_709805.1" /db_xref="GeneID:1024694" /translation="MELLLLSNSTLPGKAWLEHALPLIAEQLQGRRSAVFIPFAGVTQ TWDDYTEKTAAVLAPLGVSVTGIHSVVDPVAAIENAEIVIVGGGNTFQLLKQCRERGL LAPITDVVKRGALYIGWSAGANLACPTIRTTNDMPIVDPQGFDALNLFPLQINPHFTN ALPEGHKGETREQRIRELLVVAPELTIIGLPEGNWITVSKGHATLGGPNTTYVFKAGE EAVPLEAGHRF" misc_feature complement(4247009..4247695) /gene="pepE" /locus_tag="SF4087" /note="dipeptidase PepE; Region: PRK05282" /db_xref="CDD:179990" misc_feature complement(order(4247120..4247122,4247183..4247185, 4247225..4247227,4247291..4247293,4247336..4247338, 4247432..4247434)) /gene="pepE" /locus_tag="SF4087" /note="active site pocket [active]" /db_xref="CDD:153240" misc_feature complement(order(4247333..4247335,4247432..4247434)) /gene="pepE" /locus_tag="SF4087" /note="oxyanion hole [active]" /db_xref="CDD:153240" misc_feature complement(order(4247120..4247122,4247225..4247227, 4247336..4247338)) /gene="pepE" /locus_tag="SF4087" /note="catalytic triad [active]" /db_xref="CDD:153240" misc_feature complement(4247336..4247338) /gene="pepE" /locus_tag="SF4087" /note="active site nucleophile [active]" /db_xref="CDD:153240" gene complement(4248077..4249306) /gene="sorE" /locus_tag="SF4088" /db_xref="GeneID:1025191" CDS complement(4248077..4249306) /gene="sorE" /locus_tag="SF4088" /note="Code: ER; COG: COG1063" /codon_start=1 /transl_table=11 /product="L-sorbose-1-P-reductase" /protein_id="NP_709806.1" /db_xref="GeneID:1025191" /translation="MKTTALRLYGKRDLRLETFDLPEMQEDEILATVVTDSLCLSSWK EANLGENHKKVPDDVTTNPIIIGHEFCGDILAVGKKWQHKFQPGQRYVIQANLQLPDR PDCPGYSFPWVDGEATHVVIPNEVMEQYCLLAYDGETYFEGSLVEPLSCVIGAFNANY HLQEGSYNHTMGIRPQGHTLILGGTGPMGLLAIDYALHGPVNPSLLVITDTDNDKLSY ARKHYPSEPQTLIHYLNATDAAFDTLMALSGGHGFDDIFVFVPNEGLVTLASSLLATD GCLNFFAGPQDKHFSAPINFYDVHYAFTHYVGTSGGNTDDMRAAVKLIEEKKVQAAKV VTHILGLNAAGETTLELPAVGGGKKLVYTGKYLPLTSLTQIQDQALSAILARHQGIWS GEVEQYLLAHAEAISHD" misc_feature complement(4248101..4249306) /gene="sorE" /locus_tag="SF4088" /note="L-sorbose-1-phosphate reductase; Region: sorbose_phosphate_red; cd08238" /db_xref="CDD:176200" misc_feature complement(order(4248374..4248382,4248458..4248463, 4248521..4248523,4248527..4248532,4248599..4248601, 4248662..4248664,4248674..4248679,4248740..4248757, 4248854..4248856,4248866..4248868,4249175..4249177, 4249184..4249192)) /gene="sorE" /locus_tag="SF4088" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176200" misc_feature complement(order(4248866..4248868,4249103..4249105, 4249184..4249186,4249190..4249192)) /gene="sorE" /locus_tag="SF4088" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176200" gene complement(4249358..4250146) /gene="sorM" /locus_tag="SF4089" /db_xref="GeneID:1027804" CDS complement(4249358..4250146) /gene="sorM" /locus_tag="SF4089" /codon_start=1 /transl_table=11 /product="PTS system sorbose transporter subunit IID" /protein_id="NP_709807.1" /db_xref="GeneID:1027804" /translation="MEQRKITRSDLVSMFLRSNLQQASFNFERIHGLGFCYDMIPAIK RLYPLKEDQVAALRLHLVFFNTTPAVCGPVIGAEIDDGTINGIKVGLMGPLAGVGDPL VWGTLRPITAALGASLALSGNILGPLLFFFIFNAVRLAMKWYGLQLGFRKGVNIVSDM GGNVLQKLTEGASILGLFVMGVLVTKWTSINVPLVVSQTHAADGSTVTMTVQNILDQL CPGLLALGLTLLMVRLLNKKINPVWLIFALFGLGIIGNALGFLS" misc_feature complement(4249364..4250137) /gene="sorM" /locus_tag="SF4089" /note="PTS N-acetylgalactosamine transporter subunit IID; Region: PRK09855; cl01507" /db_xref="CDD:470226" gene complement(4250157..4250897) /gene="sorA" /locus_tag="SF4090" /db_xref="GeneID:1024287" CDS complement(4250157..4250897) /gene="sorA" /locus_tag="SF4090" /codon_start=1 /transl_table=11 /product="PTS system mannose-specific transporter subunit IIC" /protein_id="NP_709808.2" /db_xref="GeneID:1024287" /translation="MGSVLDEFQTHRPLIACTVIGLILGDLKTGIILGGTLELIALCW MNVGAAQSPDSALASIISAILVIVGQQSIATGIAIALPVAAAGQVLTVFARTITVVFQ HAADKAAEEARFRTLDILHVSALGVQALRVAIPALIVSLFVSADMVSNMLNAIPEFVT RGLQIAGGFIVVVGYAMVLRMMGVKYLMPFFFLGFLAGGYLDLSLLAFGGVGVIMALV YIQLNPQWCKAEPQLQATASTALDQLDD" misc_feature complement(4250160..4250897) /gene="sorA" /locus_tag="SF4090" /note="mannose/fructose/sorbose family PTS transporter subunit IIC; Region: PRK15065" /db_xref="CDD:237895" gene complement(4251020..4251514) /gene="sorB" /locus_tag="SF4091" /db_xref="GeneID:1027599" CDS complement(4251020..4251514) /gene="sorB" /locus_tag="SF4091" /note="Code: G; COG: COG3444" /codon_start=1 /transl_table=11 /product="PTS system sorbose transporter subunit IIB" /protein_id="NP_709809.1" /db_xref="GeneID:1027599" /translation="MNITLARIDDRLIHGQVTTVWSKVANAQRIIICNDEVYNDEVRR TLLRQAAPPGMKVNVVNIEKAVAVYHNPQYQDETVFYLFTRPQDALAMVRQGVKIGTL NIGGMAWRPGKKQLTKAVSLDDDDINAFHELNNLGVILDLRVVASDPSINIIDKINEQ LIAN" misc_feature complement(4251044..4251514) /gene="sorB" /locus_tag="SF4091" /note="Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]; Region: AgaB; COG3444" /db_xref="CDD:442668" gene complement(4251514..4251921) /gene="sorF" /locus_tag="SF4092" /db_xref="GeneID:1027788" CDS complement(4251514..4251921) /gene="sorF" /locus_tag="SF4092" /note="Code: G; COG: COG2893" /codon_start=1 /transl_table=11 /product="PTS system sorbose transporter subunit IIA" /protein_id="NP_709810.1" /db_xref="GeneID:1027788" /translation="MVNAIFCAHGKLACAMLESVQMVYGNANVEAVAFVPGENAGDIA VKLEKLVSIHNQDEWLIAVDLQCGSPWNAAAMLAMRNPRLRVISGLSLPLALELVDNQ DSMNVDELCEHLTQIAKQTCVVWKQLATTEEDF" misc_feature complement(4251580..4251921) /gene="sorF" /locus_tag="SF4092" /note="PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_man; cl00025" /db_xref="CDD:444659" misc_feature complement(order(4251622..4251624,4251715..4251717, 4251820..4251822,4251850..4251855,4251895..4251897)) /gene="sorF" /locus_tag="SF4092" /note="active pocket/dimerization site [active]" /db_xref="CDD:237978" misc_feature complement(order(4251715..4251717,4251730..4251732, 4251895..4251897)) /gene="sorF" /locus_tag="SF4092" /note="active site" /db_xref="CDD:237978" misc_feature complement(4251895..4251897) /gene="sorF" /locus_tag="SF4092" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:237978" gene complement(4251931..4252737) /gene="sorD" /locus_tag="SF4093" /db_xref="GeneID:1023581" CDS complement(4251931..4252737) /gene="sorD" /locus_tag="SF4093" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="sorbitol-6-phosphate 2-dehydrogenase" /protein_id="NP_709811.1" /db_xref="GeneID:1023581" /translation="MQTWLNLQDKIIIVTGGASGIGLAIVEELLAQGANVQMVDIHGG DGQYEGHKGYQFWPTDISSTKEVNHTVAEIIQRFGRIDGLVNNAGVNFPRLLVDEKAP AGQYELNEAAFEKMVNINQKGVFLMSQAVARQMVKQHDGVIVNVSSESGLEGSEGQSC YAATKAALNSFTRSWSKELGKHGIRVVGIAPGILEKTGLRTPEYEEALAWTRNITVEQ LREGYTKNAIPIGRAGRLAEVADFVCYLLSERASYITGVTTNIAGGKTRG" misc_feature complement(4251934..4252737) /gene="sorD" /locus_tag="SF4093" /note="sorbitol-6-phosphate 2-dehydrogenase; Provisional; Region: PRK06171" /db_xref="CDD:180439" gene complement(4252807..4253754) /gene="sorC" /locus_tag="SF4094" /db_xref="GeneID:1027602" CDS complement(4252807..4253754) /gene="sorC" /locus_tag="SF4094" /note="Code: K; COG: COG2390" /codon_start=1 /transl_table=11 /product="sor-operon regulator" /protein_id="NP_709812.2" /db_xref="GeneID:1027602" /translation="MENSDDIRLIVKIAQLYYEQDMTQAQIARELGIYRTTISRLLKR GRDQGMVTIAINYDYNENLWLEQQLKQKFGLKDVVVVSGNDEDEETQLAMMGLHGAQL LDRLLEPGDIVGFSWGRAVSALVENLPQAGQSRQLICVPIIGGPSGKLESRYHVNTLT YSAAAKLKGESHLADFPALLDNPLIRNGIMQSQHFKTISAYWDNLDIALVGIGSPAIR DGANWHAFYGGEESDDLNARQVAGDICSRFFDIHGAMVETNMSEKTLSIEMNKLKQAR YSIGIAMSEEKYSGIIGALRGKYINCLVTNSSTAELLLK" misc_feature complement(4252810..4253721) /gene="sorC" /locus_tag="SF4094" /note="DNA-binding transcriptional regulator LsrR, DeoR family [Transcription]; Region: DeoR; COG2390" /db_xref="CDD:441955" gene 4254102..4254974 /gene="yjbC" /locus_tag="SF4095" /db_xref="GeneID:1027595" CDS 4254102..4254974 /gene="yjbC" /locus_tag="SF4095" /note="Code: J; COG: COG1187" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridine synthase F" /protein_id="NP_709813.1" /db_xref="GeneID:1027595" /translation="MLPDSSVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGD QVKPGDIVKVNGQLIEPREAEDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRVFP IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPIL GTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSGIPL GEWRDLTDDELIDLFKLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASN GKRFTSPGRKKKGR" misc_feature 4254102..4254971 /gene="yjbC" /locus_tag="SF4095" /note="23S rRNA pseudouridine(2604) synthase RluF; Region: PRK10475" /db_xref="CDD:236698" mobile_element complement(4255239..4256569) /mobile_element_type="insertion sequence:IS2" gene complement(4255250..4256155) /locus_tag="SF4096" /db_xref="GeneID:1027569" CDS complement(4255250..4256155) /locus_tag="SF4096" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_709814.1" /db_xref="GeneID:1027569" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGRRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREALHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature complement(4255253..4256155) /locus_tag="SF4096" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(4256113..4256523) /locus_tag="SF4097" /db_xref="GeneID:1024102" CDS complement(4256113..4256523) /locus_tag="SF4097" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_709815.3" /db_xref="GeneID:1024102" /translation="MIVLILVFRLVIGVQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature complement(4256116..4256478) /locus_tag="SF4097" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 4256893..4258524 /gene="yjdH" /locus_tag="SF4098" /db_xref="GeneID:1023514" CDS 4256893..4258524 /gene="yjdH" /locus_tag="SF4098" /note="Code: T; COG: COG3290" /codon_start=1 /transl_table=11 /product="sensory histidine kinase DcuS" /protein_id="NP_709816.1" /db_xref="GeneID:1023514" /translation="MRHSLPYHILRKRPMKLSTTVILMVSAVLFSVLLVVHLIYFSQI SDMTRDGLANKALAVARTLADSPEIRQGLQKKPQESGIQAIAEAVRKRNDLLFIVVTD MQSLRYSHPEAQRIGQPFKGDDILNALNGEENVAINRGFLAQALRVFTPIYDENHKQI GVVAIGLELSRVTQQINDSRWSIIWSVLFGMLVGLIGTCILVKVLKKILFGLEPYEIS TLFEQRQAMLQSIKEGVVAVDDRGEVTLINDAAQELLNYRKSQDDEKLSTLSHSWSQV VDVSEVLRDGTPRRDEEITIKDRLLLINTVPVRSNGVIIGAISTFRDKTEVRKLMQRL DGLVNYADALRERSHEFMNKLHVILGLLHLKSYKQLEDYILKTANNYQEEIGSLLGKI KSPVIAGFLISKINRATDLGHTLILNSESQLPDSGSEDQVATLITTLGNLIENALEAL GPEPGGEISVTLHYRHGWLHCEVNDDGPGIAPDKIDHIFDKGVSTKGSERGVGLALVK QQVENLGGSIAVESEPGIFTQFFVQIPWDGERSNR" misc_feature 4256896..4258521 /gene="yjdH" /locus_tag="SF4098" /note="sensory histidine kinase DcuS; Provisional; Region: PRK11086" /db_xref="CDD:236839" gene 4258521..4259240 /gene="yjdG" /locus_tag="SF4099" /db_xref="GeneID:1027592" CDS 4258521..4259240 /gene="yjdG" /locus_tag="SF4099" /note="Code: TK; COG: COG2197" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional activator DcuR" /protein_id="NP_709817.2" /db_xref="GeneID:1027592" /translation="MINVLIIDDDAMVAELNRRYVAQIPGFQCCGTASTLEKAKEIIF NSDAPIDLILLDIYMQKENGLDLLPVLHNARCKSDVIVISSAADAATIKDSLHYGVVD YLIKPFQASRFEEALTGWRQKKMALEKHQYYDQAELDQLIHGSSSNEQDPRRLPKGLT PQTLRTLCQWIDAHQDYEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTG RPVYRYRIQAEHYSLLKQYCQ" misc_feature 4258521..4259237 /gene="yjdG" /locus_tag="SF4099" /note="two-component system response regulator DcuR; Region: PRK10430" /db_xref="CDD:182454" misc_feature order(4258524..4258526,4258542..4258544,4258569..4258571, 4258578..4258583,4258590..4258592,4258596..4258601, 4258671..4258673,4258689..4258691,4258722..4258727, 4258734..4258736,4258755..4258784,4258791..4258793, 4258812..4258838,4258842..4258844,4258848..4258850, 4258857..4258859,4258866..4258871,4258878..4258883) /gene="yjdG" /locus_tag="SF4099" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381152" gene 4259811..4261151 /gene="dcuB" /locus_tag="SF4100" /db_xref="GeneID:1027759" CDS 4259811..4261151 /gene="dcuB" /locus_tag="SF4100" /note="Code: R; COG: COG2704" /codon_start=1 /transl_table=11 /product="anaerobic C4-dicarboxylate transporter" /protein_id="NP_709818.1" /db_xref="GeneID:1027759" /translation="MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQP GKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTI LCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLG NVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREY VYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMF MLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLG EMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYIL PTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL" misc_feature 4259922..4261142 /gene="dcuB" /locus_tag="SF4100" /note="anaerobic C4-dicarboxylate transporter; Reviewed; Region: PRK12489" /db_xref="CDD:237115" gene 4261229..4262875 /gene="fumB" /locus_tag="SF4101" /db_xref="GeneID:1027418" CDS 4261229..4262875 /gene="fumB" /locus_tag="SF4101" /note="Code: C; COG: COG1951" /codon_start=1 /transl_table=11 /product="fumarate hydratase FumB" /protein_id="NP_709819.1" /db_xref="GeneID:1027418" /translation="MSNKPFIYQAPFPMGKDNTEYYLLTSDYVSVADFDGETILKVEP EALTLLAQQAFHDASFMLRPAHQKQVAAILHDPEASENDKYVALQFLRNSEIAAKGVL PTCQDTGTAIIVGKKGQRVWTGGGDEEALSKGVYNTYIEDNLRYSQNAALDMYKEVNT GTNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRT LGTAACPPYHIAFVIGGTSAENNLKTVKLASAHYYDELPTEGNEHGQAFRDVQLEQEL LEEAQKLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINREGIW IEKLEHNLGQYIPQELRQAGEGEAVKVDLNRPMKEILAQLSQYPVSTRLSLTGTIIVG RDIAHAKLKELIDAGKELPQYIKDHPIYYAGPAKTPAGYPSGSLGPTTAGRMDSYVDL LQSHGGSMIMLAKGNRSQQVTDACHKHGGFYLGSIGGPAAVLAQQSIKHLECVAYPEL GMEAIWKIEVEDFPAFILVDDKGNDFFQQIVNKQCANCTK" misc_feature 4261229..4262872 /gene="fumB" /locus_tag="SF4101" /note="class I fumarate hydratase; Region: PRK15391" /db_xref="CDD:185289" gene 4262998..4263627 /gene="yjdF" /locus_tag="SF4102" /db_xref="GeneID:1024635" CDS 4262998..4263627 /gene="yjdF" /locus_tag="SF4102" /note="Code: S; COG: COG3647" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709820.1" /db_xref="GeneID:1024635" /translation="MTRTLKPLILNTGALALTLILIYTGISAHDKLTWLLEVTPVIIV VPLLLATARRYPLTLLLYTLIFFHAIILMVGGQYTYAKVPVGFEVQEWLGLSRNPYDK LGHFFQGLVPALVAREILVRGMYVRGRKMVAFLVCCVALAISAMYELIEWWAALAMGQ GADDFLGTQGDQWDTQSDMFCALLGALTTVILLARFHCRQLRRYGLITG" misc_feature 4262998..4263624 /gene="yjdF" /locus_tag="SF4102" /note="hypothetical protein; Provisional; Region: PRK09867" /db_xref="CDD:182124" gene complement(4263766..4265175) /gene="melB" /locus_tag="SF4103" /db_xref="GeneID:1025676" CDS complement(4263766..4265175) /gene="melB" /locus_tag="SF4103" /note="Code: G; COG: COG2211" /codon_start=1 /transl_table=11 /product="melibiose:sodium symporter" /protein_id="NP_709821.2" /db_xref="GeneID:1025676" /translation="MTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLVGTLF LVARIWDAINDPIMGWIVNATRSRWGKFKPWILIGTLANSVILFLLFSAHLFEGTTQI VFVCVTYILWGMTYTIMDIPFWSLVPTITLDKREREQLVPYPRFFASLAGFVTAGVTL PFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVFSSDNQSSAEGSHLTLKA IVALIYKNDQLSCLLGMALAYNVASNIITGFAIYYFSYVIGDADLFPYYLSYAGAANL VTLVFFPRLVKSLSRRILWAGASILPVLSCGVLLLMALMSYHNVVLIVIAGILLNVGT ALFWVLQVIMVADTVDYGEYKLHVRCESIAYSVQTMVVKGGSAFAAFFIAVVLGMIGY VPNVEQSTQALLGMQFIMIALPTLFFMVTLILYFRFYRLNGDTLRRIQIHLLDKYRKV PPEPVHADIPVGAVSDVKA" misc_feature complement(4263769..4265175) /gene="melB" /locus_tag="SF4103" /note="melibiose:sodium transporter MelB; Region: PRK10429" /db_xref="CDD:182453" misc_feature complement(order(4264048..4264050,4264057..4264062, 4264069..4264074,4264081..4264083,4264150..4264152, 4264162..4264164,4264174..4264179,4264336..4264338, 4264348..4264350,4264432..4264434,4264441..4264449, 4264456..4264461,4264468..4264470,4264720..4264722, 4264729..4264734,4264741..4264743,4264804..4264806, 4264813..4264821,4264825..4264830,4265011..4265013, 4265110..4265112,4265119..4265124,4265131..4265136)) /gene="melB" /locus_tag="SF4103" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340890" gene complement(4265290..4266645) /gene="melA" /locus_tag="SF4104" /db_xref="GeneID:1027598" CDS complement(4265290..4266645) /gene="melA" /locus_tag="SF4104" /note="Code: G; COG: COG1486" /codon_start=1 /transl_table=11 /product="alpha-galactosidase" /protein_id="NP_709822.1" /db_xref="GeneID:1027598" /translation="MMSAPKITFIGAGSTIFVKNILGDVFHREALKTAHIALMDIDPT RLEESHIVVRKLMDSAGASGKITCHTQQKEALEDADFVVVAFQIGGYEPCTVTDFEVC KRHGLEQTIADTLGPGGIMRALRTIPHLWQICENMTEVCPDATMLNYVNPMAMNTWAM YARYPYIKQVGLCHSVQGTAEELARDLNIDPATLRYRCAGINHMAFYLELERKTADGS YVNLYPELLAAYEAGQAPKPNIHGNTRCQNIVRYEMFKKLGYFVTESSEHFAEYTPWF IKLGREDLIERYKVPLDEYPKRCVEQLANWHKELEEYKNASRIDIKPSREYASTIMNA IWTGEPSVIYGNVRNDGLIDNLPQGCCVEVACLVDANGIQPTKVGTLPSHLAALMQTN INVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIDEIYALVDDLIAAHGDWLPSWLH R" misc_feature complement(4265299..4266636) /gene="melA" /locus_tag="SF4104" /note="alpha-galactosidase; Provisional; Region: PRK15076" /db_xref="CDD:185035" gene 4266928..4267836 /gene="melR" /locus_tag="SF4105" /db_xref="GeneID:1025375" CDS 4266928..4267836 /gene="melR" /locus_tag="SF4105" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator MelR" /protein_id="NP_709823.1" /db_xref="GeneID:1025375" /translation="MNTDTFMCSSDEKQTRSPLSLYSEYQRMEIEFRAPHIMPTSHWH GQVEVNVPFDGDVEYLINNEKVNINQGHITLFWACTPHQLTDTGTCQSMAIFNLPMHL FLSWPLDKDLINHVTHGMVIKSLATQQLSPFEVRRWQQELNSPNEQIRQLAIDEIGLM LKRFSLSSWEPILVNKTSRTHKNSVSRHAQFYVSQMLGFIAENYDQALTINDVAEHVK LNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKSILDIALTAGFRSSSRFYS TFGKYVGMSPQQYRKLSQQRRQTFPG" misc_feature 4266928..4267833 /gene="melR" /locus_tag="SF4105" /note="transcriptional regulator MelR; Region: PRK10371" /db_xref="CDD:182416" gene 4268035..4270302 /gene="adiA" /locus_tag="SF4106" /db_xref="GeneID:1023399" CDS 4268035..4270302 /gene="adiA" /locus_tag="SF4106" /note="Code: E; COG: COG1982" /codon_start=1 /transl_table=11 /product="arginine decarboxylase" /protein_id="NP_709824.2" /db_xref="GeneID:1023399" /translation="MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDG FAILSSNEAIDCLMFSYQMEHPDEHQNVRQLIGKLHERQQNVPVFLLGDREKALAAMD RDLLELVDEFAWILEDTADFIAGRAVAAMTRYRQQLLPPLFSALMKYSDIHEYSWAAP GHQGGVGFTKTPAGRFYHDYYGENLFRTDMGIERTSLGSLLDHTGAFGESEKYAARVF GADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRNCHKSIEQGLMLTGAKPVYMVPSR NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQ DLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSIHKLLNALS QASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQEV IDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLTTVQD CWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRH GIVPTRTTDFQIMFLFSMGVTRGKWGTLVNTLCSFKHHYDANTPLAQVMPELVEQYPD TYANMGIHDLGDTMFAWLKENNPGARLNEAYSGLPVAEITPREAYNAIVDNNVELVSI ENLPGRIAANSVIPYPPGIPMLLSGENFGDKNSPQVSYLRSLQSWDHHFPRFEHETEG TEIIDGIYHVMCVKA" misc_feature 4268035..4270299 /gene="adiA" /locus_tag="SF4106" /note="arginine decarboxylase; Provisional; Region: PRK15029" /db_xref="CDD:184989" gene 4270627..4271388 /gene="adiY" /locus_tag="SF4107" /db_xref="GeneID:1027591" CDS 4270627..4271388 /gene="adiY" /locus_tag="SF4107" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="AraC family transcriptional regulator" /protein_id="NP_709825.1" /db_xref="GeneID:1027591" /translation="MRICSDQPCIVLLTEKDVWIRVNGKEPISLKANHMALLNCENNI IDVSSLNNTLVAHISHDIIKDYLRFLNKDLSQIPVWQRSATPILTLPCLTPDVFRVAA QHSMMPAETESEKERTRALLFTVLSRFLDSKKFLSLMMYMLRNCVSDSVYQIIESDIH KDWNLSMVASCLCLSPSLLKKKLKSENTSYSQIITTCRMRYAVNELMMDGKNISQVSQ SCGYNSTSYFISVFKDFYGMTPLHYVSQHRERTVA" misc_feature 4270789..4271355 /gene="adiY" /locus_tag="SF4107" /note="DNA-binding transcriptional regulator GadX; Provisional; Region: PRK09978" /db_xref="CDD:137624" gene 4271525..4272862 /gene="yjdE" /locus_tag="SF4108" /db_xref="GeneID:1025432" CDS 4271525..4272862 /gene="yjdE" /locus_tag="SF4108" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="arginine:agmatin antiporter" /protein_id="NP_709826.1" /db_xref="GeneID:1025432" /translation="MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLASTGGIAIY GWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNI AMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI PIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVK NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGA IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLIIVGILM TIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTT IAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNPYPLDAPISKD" misc_feature 4271525..4272859 /gene="yjdE" /locus_tag="SF4108" /note="arginine/agmatine antiporter; Region: PRK10644" /db_xref="CDD:182613" gene 4272936..4274609 /gene="yjdB" /locus_tag="SF4109" /db_xref="GeneID:1027417" CDS 4272936..4274609 /gene="yjdB" /locus_tag="SF4109" /note="Code: R; COG: COG2194" /codon_start=1 /transl_table=11 /product="metal dependent hydrolase" /protein_id="NP_709827.2" /db_xref="GeneID:1027417" /translation="MRTLFDGNTVMLKRLLKRPSLNLLAWLLLAAFYISICLNIAFFK QVLQALPLDSLHNVLVFLSMPVVAFSVINIVLTLSSFLWLNRPLACLFILIGAAAQYF IMTYGIVIDRSMIANIIDTTPAESYALMTPQMLLTLGFSGVLAELIACWLKIKPATSR LRSVLFRGANILVSVLLILLVAALFYKDYASLFRNNKELVKSLSPSNSIVASWSWYSH QRLANLPLVRIGEDAHRNPLMQNEKRKNLTILIVGETSRAENFSLNGYPRETNPRLAK DNVVYFPNTASCGTATAVSVPCMFSDMPREHYKEELAQHQEGVLDIIQRAGINVLWND NDGGCKGACDRVPHQNVTALNLPDQCINGECYDEVLFHGLEEYINNLQGDGVIVLHTI GSHGPTYYNRYPPQFRKFTPTCDTNEIQTCTKEQLVNTYDNTLVYVDYIVDKAINLLK EHQDKFTTSLVYLSDHGESLGENGIYLHGLPYAIAPDSQKQVPMLLWLSEDYQKRYQV DQNCLQKQAQTQHYSQDNLFSTLLGLTGVETKYYQAADDILQTCRRVSK" misc_feature 4272969..4274603 /gene="yjdB" /locus_tag="SF4109" /note="putative metal dependent hydrolase; Provisional; Region: PRK11598" /db_xref="CDD:183224" gene 4274606..4275274 /gene="basR" /locus_tag="SF4110" /db_xref="GeneID:1027601" CDS 4274606..4275274 /gene="basR" /locus_tag="SF4110" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator BasR" /protein_id="NP_709828.1" /db_xref="GeneID:1027601" /translation="MKILIVEDDTLLLQGLILAAQTEGYACDGVTTARMAEQSLEDGH YSLVVLDLGLPDEDGLHFLARIRQKKYTLPVLILTARDTLTDKIAGLDVGADDYLVKP FALEELHARIRALLRRHNNQGESELIVGNLTLNMGRRQVWMGGEELILTPKEYALLSR LMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKARIRTVRGFGYMLVA NEEN" misc_feature 4274606..4275271 /gene="basR" /locus_tag="SF4110" /note="two-component system response regulator PmrA; Region: PRK10643" /db_xref="CDD:182612" gene 4275275..4276375 /gene="basS" /locus_tag="SF4111" /db_xref="GeneID:1025452" CDS 4275275..4276375 /gene="basS" /locus_tag="SF4111" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="sensor protein BasS/PmrB" /protein_id="NP_709829.1" /db_xref="GeneID:1025452" /translation="MNLMRFLRRPISLRQRLILTIGAILLVFELISVFWLWHESTEQI QLFEQALRDNRNNDRHIMREIREAVASLIVPGVFMVSLTLFICYQAVRRITRPLAELQ KELEARTADNLTPIAIHSATLEIEAVVSALNDLVSRLTSTLDNERLFTADVAHELRTP LAGVRLHLELLAKTHHIDVAPLVARLDQMMESVSQLLQLARAGQSFSSGNYQHVKLLE DVILPSYDELSTMLDQRQQTLLLPESAADITVQGDATLLRMLLRNLVENAHRYSPQGS NIMIKLQEDGGAVMAVEDEGPGIDESKCGELSKAFVRMDSRYGGIGLGLSIVSRITQL HHGQFFLQNRQETSGTRAWVRLKKDQNVANQI" misc_feature 4275302..4276366 /gene="basS" /locus_tag="SF4111" /note="two-component system sensor histidine kinase PmrB; Region: PRK10755" /db_xref="CDD:236751" gene complement(4276552..4278054) /gene="proP" /locus_tag="SF4112" /db_xref="GeneID:1027564" CDS complement(4276552..4278054) /gene="proP" /locus_tag="SF4112" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="proline/glycine betaine transporter" /protein_id="NP_709830.2" /db_xref="GeneID:1027564" /translation="MLKRKKVKPITLRDVTIIDDGKLRKAITAASLGNAMEWFDFGVY GFVAYALGKVFFPGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT IVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRK RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLR HALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKYWRSLLTCIGLVIATNVTYY MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVLLGSVA LFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFMGVMASTLPAMFPTHIRYSALAAA FNISVLVAGLTPTLAAWLVESSQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGAT PAASDIQEAKEILVEHYDNIEQKIDNIDHEIADLQAKRTRLVQQHPRIDE" misc_feature complement(4276558..4278027) /gene="proP" /locus_tag="SF4112" /note="proline/glycine betaine transporter ProP; Region: PRK10642" /db_xref="CDD:182611" misc_feature complement(order(4276855..4276857,4276864..4276869, 4276876..4276881,4276888..4276890,4276936..4276938, 4276948..4276950,4276960..4276965,4277119..4277121, 4277131..4277133,4277215..4277217,4277224..4277232, 4277239..4277244,4277251..4277253,4277527..4277529, 4277536..4277541,4277548..4277550,4277608..4277610, 4277617..4277625,4277629..4277634,4277806..4277808, 4277920..4277922,4277929..4277934,4277941..4277946)) /gene="proP" /locus_tag="SF4112" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340924" gene complement(4278318..4279163) /gene="yjcZ" /locus_tag="SF4113" /db_xref="GeneID:1025331" CDS complement(4278318..4279163) /gene="yjcZ" /locus_tag="SF4113" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709831.2" /db_xref="GeneID:1025331" /translation="MLESVHPRFLVDLAQGDDARHPQAHQQQFRERLMQELLSRVQLQ TWTNGGMLNAPLSLRLTMVEKLASMLDPGHLALTQIAQHLALLQKMDHRQHSAFPELP QQIAALYEWFSARCRWKEKALTQRGLLVQAGDQSEQIFTRWRAGAYNAWSLPGRCFIV LEELRWGAFGDACRLGSPQAVVLLLGDLREKATQHLAESINAAPTTRHYYHQWFASST VPTGGDHADFLSWLGKWTTADKQPVCWSVTQRWQTVALGMPRLCSAQRLVGAMVEEIF SVNLA" misc_feature complement(4278336..4279136) /gene="yjcZ" /locus_tag="SF4113" /note="YjcZ-like protein; Region: YjcZ; pfam13990" /db_xref="CDD:404811" gene complement(4279193..4281421) /gene="yjdA" /locus_tag="SF4114" /db_xref="GeneID:1025446" CDS complement(4279193..4281421) /gene="yjdA" /locus_tag="SF4114" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709832.1" /db_xref="GeneID:1025446" /translation="MYTQTLYELSQEAERLLQLSRQQLQLLEKMPLSVPGDDAPQLAL PWSQPNIAERHAMLNNELCKISRLEMVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPM TALPTLIRHTPGQKEPVLHFSHVAPIDCLIQQLQQRLRDCDIKHLTDVLEIDKDMRAL MQRIENGVAFEKYYLGAQPIFHCLKSLNDLVRLAKALDVDFPFSAYAAIEHIPVIEVE FVHLAGLESYPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD EEVREAILAVGQSVPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVS SMWGYLANRARYELANNGKLPAPEQQRWVEDFAHAALGRRWRHADLADLEHIRHAADQ LWEDSLFAQPIQALLHAAYANASLYALRSAAHKLLNYAQQAREYLDFRAHGLNVACEQ LRQNIHQVEESLQLLQLNQAQVSGEIKHEIELALTSANHFLRQQQDAVNAQLAALFQD DSEPLSEIRTRCETLLQTAQNTISRDFTLRFAEMESTLCRVLTDVIRPIEQQVKMELS ESGFRPGFHFPVFHGVVPHFNTRQLFSEVISRQEATDEQSTRLGVVRETFSRWLNQPD WGRGNEKSPTETVDYSVLQRALSAEVDLYCQQMAKVLAEQVDESVTAGMNTFFAEFAS CLTELQTRLRESLALRQQNESVVRLMQQQLQQTVMTHSWIYTDAQLLRDDIQTLFTAE RY" misc_feature complement(4279199..4281421) /gene="yjdA" /locus_tag="SF4114" /note="clamp-binding protein CrfC; Region: PRK09866" /db_xref="CDD:182123" misc_feature complement(4281173..4281196) /gene="yjdA" /locus_tag="SF4114" /note="G1 box; other site" /db_xref="CDD:206739" misc_feature complement(4281113..4281115) /gene="yjdA" /locus_tag="SF4114" /note="G2 box; other site" /db_xref="CDD:206739" misc_feature complement(4281095..4281103) /gene="yjdA" /locus_tag="SF4114" /note="Switch I region; other site" /db_xref="CDD:206739" gene 4281824..4282159 /gene="phnA" /locus_tag="SF4115" /db_xref="GeneID:1026584" CDS 4281824..4282159 /gene="phnA" /locus_tag="SF4115" /note="Code: P; COG: COG2824" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709833.1" /db_xref="GeneID:1026584" /translation="MSLPHCPKCNSEYTYEDNGMYICPECAYEWNDAEPAQESDELIV KDANGNLLADGDSVTIIKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMK LKSEFVKKN" misc_feature 4281824..4282156 /gene="phnA" /locus_tag="SF4115" /note="phnA family protein; Region: PRK10220" /db_xref="CDD:182315" gene 4282317..4282760 /gene="phnB" /locus_tag="SF4116" /db_xref="GeneID:1027000" CDS 4282317..4282760 /gene="phnB" /locus_tag="SF4116" /note="Code: S; COG: COG2764" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709834.1" /db_xref="GeneID:1027000" /translation="MPLSPYLSFAGNCSDAIAYYQRTLGAELLYKISFGEMPKSAQDS AENCPSGMQFPDTAIAHANVRIAGSDIMMSDAIPSGKASYSGFTLVLDSQQVEEGKRW FDNLAANGKIEMAWQETFWAHGFGKVTDKFGVPWMINVVKQQPTQ" misc_feature 4282317..4282757 /gene="phnB" /locus_tag="SF4116" /note="VOC family metalloprotein YjdN; Region: PRK10148" /db_xref="CDD:236656" misc_feature order(4282323..4282340,4282386..4282388,4282518..4282523, 4282530..4282532,4282575..4282592,4282596..4282598, 4282608..4282610,4282695..4282697,4282725..4282727) /gene="phnB" /locus_tag="SF4116" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:319899" gene 4282893..4283681 /gene="phnC" /locus_tag="SF4117" /db_xref="GeneID:1026572" CDS 4282893..4283681 /gene="phnC" /locus_tag="SF4117" /note="Code: P; COG: COG3638" /codon_start=1 /transl_table=11 /product="phosphonate/organophosphate ester transporter subunit" /protein_id="NP_709835.2" /db_xref="GeneID:1026572" /translation="MQTIIRVEKLAKTFNQHQALHAVDLNIHHSEMVALLGPSGSGKS TLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLS VLENVLIGALGSTPFWRTCFSWFTGEQKQRALQALTRVGMVHFAHQRVSTLSGGQQQR VAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALR YCERIVALRQGHVFYDGSSQLFDNERFDHLYRSINRIEENAKAA" misc_feature 4282893..4283678 /gene="phnC" /locus_tag="SF4117" /note="phosphonate ABC transporter ATP-binding protein; Region: PRK09984" /db_xref="CDD:182182" gene 4283706..4284722 /gene="phnD" /locus_tag="SF4118" /db_xref="GeneID:1026984" CDS 4283706..4284722 /gene="phnD" /locus_tag="SF4118" /note="Code: P; COG: COG3221" /codon_start=1 /transl_table=11 /product="phosphonate transporter substrate-binding protein" /protein_id="NP_709836.1" /db_xref="GeneID:1026984" /translation="MNAKIIASLAFTSMFSLSTLLTPAHAEEQEKALNFGIISTESQQ NLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYGNLSAMEAVDRA NGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVP GYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKE LKVIWKSPLILGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERLGWAPFRASS DLQLVPIRQLALFKEIQSVKGNKGLNEQDKLAKTTEIQAQLDDLDRLNNALSAMSSVS KAVQ" misc_feature 4283787..4284557 /gene="phnD" /locus_tag="SF4118" /note="Substrate binding domain of ABC-type phosphonate uptake system; contains the type 2 periplasmic binding fold; Region: PBP2_PnhD; cd13575" /db_xref="CDD:270293" misc_feature order(4283922..4283924,4283970..4283972,4283976..4283978, 4284060..4284062,4284162..4284170,4284252..4284254, 4284306..4284308,4284396..4284398) /gene="phnD" /locus_tag="SF4118" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270293" mobile_element complement(4284980..4285743) /mobile_element_type="insertion sequence:IS1" gene complement(4284995..4285390) /gene="insB" /locus_tag="SF4119" /db_xref="GeneID:1027001" CDS complement(4284995..4285390) /gene="insB" /locus_tag="SF4119" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709837.1" /db_xref="GeneID:1027001" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(4284998..4285387) /gene="insB" /locus_tag="SF4119" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4285417..4285692) /gene="insA" /locus_tag="SF4120" /db_xref="GeneID:1024636" CDS complement(4285417..4285692) /gene="insA" /locus_tag="SF4120" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709838.1" /db_xref="GeneID:1024636" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<4285420..4285671) /gene="insA" /locus_tag="SF4120" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4285910..4287487 /gene="yjcC" /locus_tag="SF4121" /pseudo /db_xref="GeneID:1027367" misc_feature 4285910..4287487 /gene="yjcC" /locus_tag="SF4121" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790496 (529 aa). BLAST with identity of 98% in 526 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(4287490..4287813) /gene="soxS" /locus_tag="SF4122" /db_xref="GeneID:1025861" CDS complement(4287490..4287813) /gene="soxS" /locus_tag="SF4122" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional regulator SoxS" /protein_id="NP_709839.1" /db_xref="GeneID:1025861" /translation="MSHQKIIQDLIAWIDVHIDQPLNIDVVAKKSGYSKWYLQRMFRT VTHQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRRQFDRTPSD YRHRL" misc_feature complement(4287493..4287813) /gene="soxS" /locus_tag="SF4122" /note="superoxide response transcriptional regulator SoxS; Region: PRK10219" /db_xref="CDD:182314" gene 4287899..4288363 /gene="soxR" /locus_tag="SF4123" /db_xref="GeneID:1026084" CDS 4287899..4288363 /gene="soxR" /locus_tag="SF4123" /note="Code: K; COG: COG0789" /codon_start=1 /transl_table=11 /product="redox-sensitivie transcriptional activator SoxR" /protein_id="NP_709840.1" /db_xref="GeneID:1026084" /translation="MEKKLPRIKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSG NQRRYKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREEL DRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEEGTGARLLEDEQN" misc_feature 4287899..4288360 /gene="soxR" /locus_tag="SF4123" /note="redox-sensitive transcriptional activator SoxR; Region: PRK15002" /db_xref="CDD:184964" gene 4289069..4290418 /gene="yjcD" /locus_tag="SF4124" /db_xref="GeneID:1026723" CDS 4289069..4290418 /gene="yjcD" /locus_tag="SF4124" /note="Code: R; COG: COG2252" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709841.1" /db_xref="GeneID:1026723" /translation="MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVI VVPGMLGKAGFPPAAVFVATCLVAGLGSIVMGLWANLPLAIGCAISLTAFTAFSLVLG QHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPHGVAHGTGIGIGLFLLLIAANG VGLVIKNPLDGLPVALGDFATFPVIMSLAGLAVIIGLEKLKVPGGILLTIIGISIVGL IFDPNVHFSGVFAMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTI RAVAGQANLLDKDGQIIDGGKALTTDSMSSVFSGLVGAAPAAVYIESAAGTAAGGKTG LTAITVGVLFLLILFLSPLSYLVPGYATAPALMYVGLLMLSNVAKIDFADFVDAMAGL VTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAVALVTFYAGGWAI" misc_feature 4289096..4290400 /gene="yjcD" /locus_tag="SF4124" /note="Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 (NCS2) family [Nucleotide transport and metabolism]; Region: NCS2; COG2252" /db_xref="CDD:441853" gene 4290569..4292218 /gene="yjcE" /locus_tag="SF4125" /db_xref="GeneID:1027593" CDS 4290569..4292218 /gene="yjcE" /locus_tag="SF4125" /note="Code: P; COG: COG0025" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709842.1" /db_xref="GeneID:1027593" /translation="MEIFFTILIMTLVVSLSGVVTRVMPFQIPLPLMQIAIGALLAWP TFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVVVTVVGIGF LIYWVVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGL VSLKFAVAVAMGTMIFTVGGATVEFMKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEP ATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWA MLEFVFNGMVFLLLGLQLPGILETSLMAAEIDPNVEIWMLFTDIILIYAALMLVRFGW LWTMKKFSNRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGNVFP ARYELVFLAAGVILFSLFVGVVMLPILLQHIEVADHSQQLKEERIARAATAEVAIVAI QKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSVQEENLERRFRLAA LRSERAELYHLRATREISNETLQKLLHDLDLLEALLIEENQ" misc_feature 4290587..4292206 /gene="yjcE" /locus_tag="SF4125" /note="Na+/H+ antiporter, bacterial form; Region: a_cpa1; TIGR00831" /db_xref="CDD:129911" gene complement(4292372..4293664) /gene="yjcF" /locus_tag="SF4126" /db_xref="GeneID:1027594" CDS complement(4292372..4293664) /gene="yjcF" /locus_tag="SF4126" /note="Code: S; COG: COG1357" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709843.1" /db_xref="GeneID:1027594" /translation="MRYNGLNNMFFPLCQINDNHSITSSSHTKKTKSDNYSKHHKNTL IDNKALSLFKIDDHEKVIGLIQKMKRIYDSLPSGKITKETDRKIHKYFIDIALYANNK CDDRITRRVYLSKEKDVSIKVVYFINNVAVHNNTIEIPQIVNGGYDFSHLSLKGIVIK DEDLSNSNFAGCRLQNAIFQDCNMYKTNFYYAIMEKILFDNCILDDSNFAQIKMADGT LNACSAMHVQFYNAAMNRANIKNTFLDYSNFYMAYMAEVNLYKVIAPYVNLFKADLSF SKLDLINFEHADLSRVNLNKAILQNINLIDSKLFCTWLTNTFLEMVICTGSNMANVNF NNANLSNCHFNCSILTKACMFNTRLYRVNFDEASVQGMGISILRGEENIPIDSDTLVT LQKFFEEDCTSHTGMSQTEDNINAVAMKITADIMQHAD" misc_feature complement(4292642..4293223) /gene="yjcF" /locus_tag="SF4126" /note="Uncharacterized conserved protein YjbI, contains pentapeptide repeats [Function unknown]; Region: YjbI; COG1357" /db_xref="CDD:440968" misc_feature complement(4292573..4292686) /gene="yjcF" /locus_tag="SF4126" /note="Pentapeptide repeats (8 copies); Region: Pentapeptide; pfam00805" /db_xref="CDD:459943" gene complement(4293842..4295491) /gene="actP" /locus_tag="SF4127" /db_xref="GeneID:1027384" CDS complement(4293842..4295491) /gene="actP" /locus_tag="SF4127" /note="Code: EHR; COG: COG0591" /codon_start=1 /transl_table=11 /product="acetate permease" /protein_id="NP_709844.1" /db_xref="GeneID:1027384" /translation="MKRVLTALAATLPFAANAADAISGAVERQPTNWQAIIMFLIFVV FTLGITYWASKRVRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYD GLIYSLGFLVGWPIILFLIAERLRNLGRYTSADVASYRLKQGPIRILSACGSLVVVAL YLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFG ASFMAFMVMKHVGFSFNNLFSEAMAVHPKGVDIMKPGGLVKDPISALSLGLGLMFGTA GLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAG HLIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVADLTLAGASAVSHDLYANVF KKGATEREELRVSKITVLILGVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLS MYWSKLTTRGAMLGGWLGLITAVVLMILGPTIWVQILGHEKAIFPYEYPALFSISVAF LGIWFFSATDNSAEGARERELFRAQFIRSQTGFGVEQGRAH" misc_feature complement(4293845..4295491) /gene="actP" /locus_tag="SF4127" /note="cation/acetate symporter ActP; Region: actP; PRK09395" /db_xref="CDD:236495" misc_feature complement(order(4294379..4294384,4294391..4294393, 4295240..4295242,4295249..4295251)) /gene="actP" /locus_tag="SF4127" /note="Na binding site [ion binding]; other site" /db_xref="CDD:271374" gene complement(4295488..4295802) /gene="yjcH" /locus_tag="SF4128" /db_xref="GeneID:1026983" CDS complement(4295488..4295802) /gene="yjcH" /locus_tag="SF4128" /note="Code: S; COG: COG3162" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709845.2" /db_xref="GeneID:1026983" /translation="MNGTIYQRIEDNAHFRELVEKRQRFATILSIIMLAVYIGFILLI AFAPGWLGTPLNPNTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNEVLHEVQ AS" misc_feature complement(4295491..4295793) /gene="yjcH" /locus_tag="SF4128" /note="Uncharacterized membrane protein, DUF485 family [Function unknown]; Region: YjcH; COG3162" /db_xref="CDD:442396" gene complement(4296002..4297960) /gene="acs" /locus_tag="SF4129" /pseudo /db_xref="GeneID:1024111" misc_feature complement(4296002..4297960) /gene="acs" /locus_tag="SF4129" /note="Similar to Escherichia coli K12 acetyl-CoA synthetase gi: 1790505 (653 aa). BLAST with identity of 98% in 652 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene 4298353..4299789 /gene="nrfA" /locus_tag="SF4130" /db_xref="GeneID:1026149" CDS 4298353..4299789 /gene="nrfA" /locus_tag="SF4130" /note="Code: P; COG: COG3303" /codon_start=1 /transl_table=11 /product="cytochrome c nitrite reductase subunit c552" /protein_id="NP_709846.2" /db_xref="GeneID:1026149" /translation="MTRIKINARRIFSLLIPFFFFTSVHAEQTAAPAKPVTVEAKNET FAPQHHDQYLSWKATSEQSERVDALAEDPRLVILWAGYPFSRDYNKPRGHAFAVTDVR ETLRTGAPKNAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGC ADCHNTASPEFAKGKPELTLSRPYAARAMEAIGKPFEKAGRFDQQSMVCGQCHVEYYF DGKNKAVKFPWDDGMKVENMEQYYDKIAFSDWTNSLSKTPMLKAQHPEYETWTAGIHG KNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKAALQKVVAERKQ SINDLKIKVEDQLVHAHFEAKAALDAGATEAEMKPIQDDIRHAQWRWDLAIASHGIHM HAPEEGLRMLGTAMDKAADARTKLARLLATKGITHEIQIPDISTKEKAQQAIGLNMEQ IKAEKQDFIKTVIPQWEEQARKNGLLSQ" misc_feature 4298362..4299786 /gene="nrfA" /locus_tag="SF4130" /note="ammonia-forming cytochrome c nitrite reductase; Region: nrfA; PRK11125" /db_xref="CDD:236854" gene 4299834..4300400 /gene="nrfB" /locus_tag="SF4131" /db_xref="GeneID:1025062" CDS 4299834..4300400 /gene="nrfB" /locus_tag="SF4131" /codon_start=1 /transl_table=11 /product="cytochrome c nitrite reductase pentaheme subunit" /protein_id="NP_709847.2" /db_xref="GeneID:1025062" /translation="MSVLRSLLTAGVLASGLLWSLNGITATPAVQASGDRYEVTQQRN PDAACLDCHKPDTEGMHGKHASVINPNNKLPVTCTNCHGQASPQHREGVKDVMRFNEP MYKVGEQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPQQDTMQTLSDKGRI KICVDCHSDQRTNPNFNPASVPLLKEQP" misc_feature 4299843..4300391 /gene="nrfB" /locus_tag="SF4131" /note="cytochrome c nitrite reductase pentaheme subunit; Provisional; Region: PRK11659" /db_xref="CDD:183264" gene 4300397..4301068 /gene="nrfC" /locus_tag="SF4132" /db_xref="GeneID:1026882" CDS 4300397..4301068 /gene="nrfC" /locus_tag="SF4132" /note="Code: C; COG: COG0437" /codon_start=1 /transl_table=11 /product="formate-dependent nitrite reductase" /protein_id="NP_709848.1" /db_xref="GeneID:1026882" /translation="MTWSRRQFLTGVGVLAAVSGTAGRVVAKTLNINGVRYGMVHDES LCIGCTACMDACREVNKVPEGVSRLTIIRSEPQGEFPDVKYRFFRKSCQHCDHAPCVD VCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVTKTADKCDFCRKTNL QAGKLPACVEACPTKALTFGNLDDPNSEISQLLRQKPTYRYKLALGTKPKLYRVPFKY GEVSQ" misc_feature 4300400..4301065 /gene="nrfC" /locus_tag="SF4132" /note="cytochrome c nitrite reductase, Fe-S protein; Region: cyt_nit_nrfC; TIGR03149" /db_xref="CDD:274451" gene 4301065..4302021 /gene="nrfD" /locus_tag="SF4133" /db_xref="GeneID:1023349" CDS 4301065..4302021 /gene="nrfD" /locus_tag="SF4133" /note="Code: P; COG: COG3301" /codon_start=1 /transl_table=11 /product="formate-dependent nitrate reductase, transmembrane protein" /protein_id="NP_709849.1" /db_xref="GeneID:1023349" /translation="MTQTSAFHFESLVWDWPIAIYLFLIGISAGLVTLAVLLRRFYPQ AGGADSTLLRTTLIVGPGAVILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQ LYMVVLVLWLAKIFEHDLLALQQRWLPKLGIVQKVLSLLTPVHRGLETLMLVLAVLLG AYTGFLLSALKSYPFLNNPSLPVLLLFSGISSGAAVALIAMAIRQRSNPHSTEAHFVH RMEIPVVWGEIFLLVAFFVGLALGDDGKVRALVAALGGGFWTWWFWLGVAGLGLIVPM LLKPWVNRSSGIPAVLAACGASLVGVLMLRFFILYAGQLTVA" misc_feature 4301077..4302018 /gene="nrfD" /locus_tag="SF4133" /note="cytochrome c nitrite reductase, NrfD subunit; Region: cyt_nit_nrfD; TIGR03148" /db_xref="CDD:274450" gene 4302101..4303759 /gene="nrfE" /locus_tag="SF4134" /db_xref="GeneID:1026751" CDS 4302101..4303759 /gene="nrfE" /locus_tag="SF4134" /note="Code: O; COG: COG1138" /codon_start=1 /transl_table=11 /product="heme lyase subunit NrfE" /protein_id="NP_709850.2" /db_xref="GeneID:1026751" /translation="MLTPLTAFAGVRLRWPAMMRLTCIGILAQFALLLLAFGVLTYCF LISDFSVIYVAQHSYSLLSWELKLAAVWGGHEGSLLLWVLLLSAWSALFAWHYRQQSD PLFPLTLAVLSLMLAALLLFVVLWSDPFVRIFPPAIEGRDLNPMLQHPGLIFHPPLLY LGYGGLMVAASVALASLLRGEFDAASARICWRWALPGWSALTAGIILGSWWAYCELGW GGWWFWDPVENASLLPWLSATALLHSLSLTRQRGIFRHWSLLLAIVTLMLSLLGTLIV RSGILVSVHAFALDNVRAVPLFSLFALISLASLALYGWRARDGGPAVRFSGLSREMLI LATLLLFCAVLLIVLVGTLYPMIYGLLGWGRLSVGAPYFNRATLPFGLLMLVVIVLAT FVSGKRVQLPALVAHAGVLLFAAGIVVSSVSRQEISLNLQPGQQVTLAGYTFRFERLD LQARGNYTSEKAIVALFDHQQRIGELTPERRFYEARRQQMMEPSIRWNGIHDWYAVMG EKTRADRYAFRLYVQSGVRWIWGGGLLMIAGALLSGWRGKKRDE" misc_feature 4302101..4303756 /gene="nrfE" /locus_tag="SF4134" /note="heme lyase subunit NrfE; Provisional; Region: PRK10369" /db_xref="CDD:236675" gene 4303752..4304135 /gene="nrfF" /locus_tag="SF4135" /db_xref="GeneID:1025491" CDS 4303752..4304135 /gene="nrfF" /locus_tag="SF4135" /note="Code: O; COG: COG3088" /codon_start=1 /transl_table=11 /product="formate-dependent nitrite reductase complex subunit NrfF" /protein_id="NP_709851.1" /db_xref="GeneID:1025491" /translation="MNKGLLTLLLLFTCFARAQVVDTWQFANPQQQQQALNIASQLRC PQCQNQNLLESNAPVAVSMRHQVYSMVSEGKNEVEIIGWMTERYGDFVRYNPPLTGQT LVLWALPVVLLLLMALILWRVRAKR" misc_feature 4303785..>4304057 /gene="nrfF" /locus_tag="SF4135" /note="cytochrome c nitrite reductase, accessory protein NrfF; Region: cyt_nit_nrfF; TIGR03147" /db_xref="CDD:274449" misc_feature order(4303881..4303883,4303890..4303892) /gene="nrfF" /locus_tag="SF4135" /note="putative catalytic site [active]" /db_xref="CDD:319866" gene 4304132..4304728 /gene="nrfG" /locus_tag="SF4136" /db_xref="GeneID:1025048" CDS 4304132..4304728 /gene="nrfG" /locus_tag="SF4136" /note="Code: R; COG: COG0457" /codon_start=1 /transl_table=11 /product="formate-dependent nitrite reductase complex subunit NrfG" /protein_id="NP_709852.1" /db_xref="GeneID:1025048" /translation="MKQPQIPVKMLTTLTILMVFLCVGSYLLSPKWQAVRAEYQRQRD PLHQFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANY AQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSD" misc_feature 4304132..4304725 /gene="nrfG" /locus_tag="SF4136" /note="formate-dependent nitrite reductase complex subunit NrfG; Provisional; Region: PRK10370" /db_xref="CDD:182415" misc_feature 4304348..4304434 /gene="nrfG" /locus_tag="SF4136" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(4304351..4304353,4304360..4304365,4304372..4304377, 4304381..4304383,4304453..4304455,4304462..4304467, 4304474..4304479,4304483..4304485,4304495..4304497, 4304564..4304566,4304573..4304578,4304585..4304590, 4304597..4304599) /gene="nrfG" /locus_tag="SF4136" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 4304447..4304548 /gene="nrfG" /locus_tag="SF4136" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 4304561..4304647 /gene="nrfG" /locus_tag="SF4136" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene 4305070..4306383 /gene="gltP" /locus_tag="SF4137" /db_xref="GeneID:1025153" CDS 4305070..4306383 /gene="gltP" /locus_tag="SF4137" /note="Code: C; COG: COG1301" /codon_start=1 /transl_table=11 /product="glutamate/aspartate:proton symporter" /protein_id="NP_709853.1" /db_xref="GeneID:1025153" /translation="MKNIKFSLAWQILFAMVLGILLGSYLHYHSDSRDWLVVNLLSPA GDIFIHLIKMIVVPIVISTLVVGIAGVGDAKQLGRIGAKTIIYFEVITTVAIILGITL ANVFQPGAGVDMSQLATVDISKYQSTTEAVQSSSHGIMGTILSLVPTNIVASMAKGEM LPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVT VANFGFSSLWPLAKLVLLVHFAILFFALVVLGIVARLCGLSVWILIRILKDELILAYS TASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGID LSIWQEIILVLTLMVTSKGIAGVAGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMA RTALNVVGNALAVLVIAKWEHKFDRKKALAYEREVLGKFDKTADQ" misc_feature 4305070..4306380 /gene="gltP" /locus_tag="SF4137" /note="glutamate/aspartate:proton symporter; Provisional; Region: gltP; PRK11283" /db_xref="CDD:183075" gene complement(4306461..4307129) /gene="yjcO" /locus_tag="SF4138" /db_xref="GeneID:1027484" CDS complement(4306461..4307129) /gene="yjcO" /locus_tag="SF4138" /note="Code: R; COG: COG0790" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709854.2" /db_xref="GeneID:1027484" /translation="MLFLTFFAHANDSEPGSQYLKAAEAGDRRAQYFLADSWFSSGDL SKAEYWAQKAADSGDADACALLAQIKITNPVSLDYPQAKVLAEKAAQAGSKEGEVTLA HILVNTQAGKPDYPKAISLLENASEDLENDSAVDAQMLLGLIYANGVGIKADDDKATW YFKRSSAISRTGYSEYWAGMMFLNGEEGFIEKNKQKALHWLNLSCMEGFDTGCEEFEK LTNG" misc_feature complement(4306515..4307108) /gene="yjcO" /locus_tag="SF4138" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature complement(4306914..4307003) /gene="yjcO" /locus_tag="SF4138" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(4306809..4306898) /gene="yjcO" /locus_tag="SF4138" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(4306689..4306790) /gene="yjcO" /locus_tag="SF4138" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" gene complement(4307244..4309391) /gene="fdhF" /locus_tag="SF4139" /pseudo /db_xref="GeneID:1023549" misc_feature complement(4307244..4309391) /gene="fdhF" /locus_tag="SF4139" /note="Similar to Escherichia coli K12 selenopolypeptide subunit of formate dehydrogenase H gi: 3868721 (716 aa). BLAST with identity of 98% in 716 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(4309589..4311055) /gene="yjcP" /locus_tag="SF4140" /db_xref="GeneID:1026993" CDS complement(4309589..4311055) /gene="yjcP" /locus_tag="SF4140" /note="Code: MN; COG: COG1538" /codon_start=1 /transl_table=11 /product="outer membrane efflux protein MdtP" /protein_id="NP_709855.1" /db_xref="GeneID:1026993" /translation="MINRQLSRLLLCSILGSTTLISGCALVRKDSAPHQQLKPEQIKL ADDIHLASSGWPQAQWWKQLNDPQLDALIQRTLSGSHTLAEAKLREEKAQSQADLLDA GSQLQVAALGMLNRQRVSANGFLSPYAMDAPALGMDGPYYTEATVGLFAGLDLDLWGV HRSAVAAAIGAHNAALAETAAVELSLTTGVAQLYYSMQASYQMLDLLEQTRDVIDYAV KAHQSKVAHGLEAQVPFHGARAQILAVDKQIAAVKGQITETRESLRALIGAGASDMPE IKPVALPRVQTGIPATLSYELLARRPDLQAMRWYVQASLDQVDSARALFYPSFDIKAF FGLDAIHLDTLFKKTSRQFNFIPGLKLPLFDGGRLNANLEGTRAASNMMIERYNQSVL NAVRDVAVNGTRLQTLNDEREMQAEHVEATRFTQRAAEAAYQRGLTSRLQATEARLPV LAEEMSLLMLDSRRVIQSIQLMKSLGGGYQAAPVVEKK" misc_feature complement(4309592..4311055) /gene="yjcP" /locus_tag="SF4140" /note="MdtP family multidrug efflux transporter outer membrane subunit; Region: PRK09915" /db_xref="CDD:182142" gene complement(4311052..4312953) /gene="yjcQ" /locus_tag="SF4141" /db_xref="GeneID:1025729" CDS complement(4311052..4312953) /gene="yjcQ" /locus_tag="SF4141" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709856.4" /db_xref="GeneID:1025729" /translation="MTFEIPFVALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSL FLIYKWSYGEPLIRLIIAGPILMGCMFLMRTHRLGLVFFAVAIYGQTFPAMLDYPEVV VRLTLWCIVVGLYPTLLMTLIGVLWFPNRAITQMHQALNDRLDDAISHLTDSLAPLPE TRIEREALALQKLNVFCLADDANWRTQSAWWQSCVATVTYIYSTLNRYDPTSFADSQA IIEFRQKLASEINKLQHAVAEGQCWQSDWRLSESEAVAARECNLENICQTLLQLGQMN PNTPPTPAAKPPSMVADAFTNPDYIRYAVKTLLACLICYTFYSGVDWEGIHTCMLTCV IVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNIVELLFVLAPIFLLGAW IATSSERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGIIIGTVVSAMIYTFV WPESEARTLPQKLAGALGMLSKVMRIPRQQEVTALRTYLQIRIGLHAAFNACEEMCQR VALERQLDSEERALLIERSQTVIRQGRDILHAWDATWNSAQALDNALQPDRAGQFADA LEKYAAGLATALSRSPQITLEETPTSQAILPTLLKQEQHVCQLFARLPDWTAPALTPA TEQAQGATQ" misc_feature complement(4311055..4312953) /gene="yjcQ" /locus_tag="SF4141" /note="multidrug efflux transporter permease subunit MdtO; Region: PRK11427" /db_xref="CDD:183131" gene complement(4313094..4314125) /gene="yjcR" /locus_tag="SF4142" /db_xref="GeneID:1025617" CDS complement(4313094..4314125) /gene="yjcR" /locus_tag="SF4142" /note="Code: Q; COG: COG1566" /codon_start=1 /transl_table=11 /product="multidrug resistance protein MdtN" /protein_id="NP_709857.2" /db_xref="GeneID:1025617" /translation="MESTPKKAPRSKFPALLVVALALVALVFVIWRVDSAPSTNDAYA SADTIDVVPEVSGRIVELAVTDNQAVKQGDLLFRIDPRPYEANLAKAEASLAALDKQI MLTQRSVDAQQFGADSVNATVEKARAAAKQATDTLRRTEPLLKEGFVSAEDVDRARTA QRAAEADLNAVLLQAQSAASAVSGVDALVAQRAAVEADIALTKLHLEMTTVRAPFDGR IISLKTSVGQFASAMRPIFTLIDTRHWYVIANFRETDLKNIRSGTPATIRLMSDSGKT FEGKVDSIGYGVLPDDGGLVLGGLPKVSRSINWVRVAQRFPVKIMVDKPDPEMFRIGA SAVANLEPQ" misc_feature complement(4313097..4314125) /gene="yjcR" /locus_tag="SF4142" /note="multidrug transporter subunit MdtN; Region: PRK10476" /db_xref="CDD:182488" gene complement(4314091..4314411) /locus_tag="SF4143" /db_xref="GeneID:1024149" CDS complement(4314091..4314411) /locus_tag="SF4143" /codon_start=1 /transl_table=11 /product="IS1 encoded protein" /protein_id="NP_709858.1" /db_xref="GeneID:1024149" /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL KSPSYTKSVSWQHYPAGKYQSGICRNYLYRPFCSLRHAVLAGIFLIYLRRAHGKYAEK STSQ" mobile_element 4314237..4315004 /mobile_element_type="insertion sequence:IS1" gene 4314486..4314989 /gene="insB" /locus_tag="SF4144" /db_xref="GeneID:1025229" CDS 4314486..4314989 /gene="insB" /locus_tag="SF4144" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709859.1" /db_xref="GeneID:1025229" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 4314594..4314986 /gene="insB" /locus_tag="SF4144" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4315118..4315654) /gene="ssb" /locus_tag="SF4145" /db_xref="GeneID:1024145" CDS complement(4315118..4315654) /gene="ssb" /locus_tag="SF4145" /note="Code: L; COG: COG0629" /codon_start=1 /transl_table=11 /product="single-stranded DNA-binding protein" /protein_id="NP_709860.2" /db_xref="GeneID:1024145" /translation="MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDK ATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEV VVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA PAAPSNEPPMDFDDDIPF" misc_feature complement(4315121..4315654) /gene="ssb" /locus_tag="SF4145" /note="single-stranded DNA-binding protein; Provisional; Region: PRK09010" /db_xref="CDD:236362" misc_feature complement(order(4315355..4315357,4315364..4315366, 4315397..4315399,4315424..4315426,4315487..4315489, 4315493..4315495,4315538..4315546,4315619..4315630)) /gene="ssb" /locus_tag="SF4145" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:239942" misc_feature complement(order(4315346..4315348,4315352..4315354, 4315391..4315396,4315400..4315402,4315406..4315408, 4315430..4315435,4315472..4315474,4315478..4315480, 4315484..4315486,4315490..4315492,4315496..4315501, 4315535..4315540,4315559..4315561,4315589..4315591, 4315607..4315615)) /gene="ssb" /locus_tag="SF4145" /note="ssDNA binding site [nucleotide binding]; other site" /db_xref="CDD:239942" gene 4315908..4318730 /gene="uvrA" /locus_tag="SF4146" /db_xref="GeneID:1027393" CDS 4315908..4318730 /gene="uvrA" /locus_tag="SF4146" /note="Code: L; COG: COG0178" /codon_start=1 /transl_table=11 /product="excinuclease ABC subunit A" /protein_id="NP_709861.1" /db_xref="GeneID:1027393" /translation="MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDT LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT EIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKG EHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLA ESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGA CPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLADHYKFDVEA PWGSLSANVHKVVLYGSGKENIEFKYMNDRGDTSIRRHPFEGVLHNMERRYKETESSA VREELAKFISNRPCASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAG QRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGV MYVLDEPSIGLHQRDNERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGV HGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLK DVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHF DKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRC EACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEARE FFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYIL DEPTTGLHFADIQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGE ILVSGTPETVAECEASHTARFLKPML" misc_feature 4315908..4318727 /gene="uvrA" /locus_tag="SF4146" /note="excinuclease ABC subunit UvrA; Region: uvrA; PRK00349" /db_xref="CDD:234734" gene complement(4318765..4319121) /gene="yjbR" /locus_tag="SF4147" /db_xref="GeneID:1025772" CDS complement(4318765..4319121) /gene="yjbR" /locus_tag="SF4147" /note="Code: S; COG: COG2315" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709862.1" /db_xref="GeneID:1025772" /translation="MTISELLQYCMAKPSAEQSVHNDWKATQIKVEDVLFAMVKEVEN RPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQ AVNLLPEEKRKLLVQL" misc_feature complement(4318777..4319121) /gene="yjbR" /locus_tag="SF4147" /note="Predicted DNA-binding protein with #double-wing# structural motif, MmcQ/YjbR family [Transcription]; Region: MmcQ; COG2315" /db_xref="CDD:441889" gene complement(4319125..4319541) /gene="yjbQ" /locus_tag="SF4148" /db_xref="GeneID:1023599" CDS complement(4319125..4319541) /gene="yjbQ" /locus_tag="SF4148" /note="Code: S; COG: COG0432" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709863.1" /db_xref="GeneID:1023599" /translation="MWYQKTLTLSAKSRGFHLVTDEILNQLADMPRVNIGLLHLLLQH TSASLTLNENCDPTVRHDMECFFLRTVPDNGNYEHDYEGADDMPSHIKSSMLGTSLVL PVHKGRIQTGTWQGIWLGEHRIHGGSRRIIATLQGE" misc_feature complement(4319128..4319532) /gene="yjbQ" /locus_tag="SF4148" /note="secondary thiamine-phosphate synthase enzyme; Region: TIGR00149_YjbQ" /db_xref="CDD:129253" gene complement(4319652..4320365) /gene="aphA" /locus_tag="SF4149" /db_xref="GeneID:1027006" CDS complement(4319652..4320365) /gene="aphA" /locus_tag="SF4149" /note="Code: R; COG: COG3700" /codon_start=1 /transl_table=11 /product="acid phosphatase AphA" /protein_id="NP_709864.2" /db_xref="GeneID:1027006" /translation="MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQA PIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFW EKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPAT NMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTY KPLPQAGAFGEEVIVNSEY" misc_feature complement(4319655..4320365) /gene="aphA" /locus_tag="SF4149" /note="Acid phosphatase, class B [Inorganic ion transport and metabolism, General function prediction only]; Region: AphA; COG3700" /db_xref="CDD:442914" gene 4320728..4321135 /locus_tag="SF4150" /db_xref="GeneID:1025857" CDS 4320728..4321135 /locus_tag="SF4150" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709865.1" /db_xref="GeneID:1025857" /translation="MVINFITRDGDDDMNISYVNSNKTTSLSVELDALNNKDISYAKD FFLYIETQLKIAKDFCRPGEEVSSSIASKVFHAFIDLVNKIRGKKDFMYICTLCCFAE EVKGDYSHYRTFLFDIGNQYKVKLTQSGKKSSL" gene complement(4321474..4322667) /gene="tyrB" /locus_tag="SF4151" /db_xref="GeneID:1025223" CDS complement(4321474..4322667) /gene="tyrB" /locus_tag="SF4151" /note="Code: E; COG: COG1448" /codon_start=1 /transl_table=11 /product="aromatic amino acid aminotransferase" /protein_id="NP_709866.2" /db_xref="GeneID:1025223" /translation="MFQKVDAYAGDPILTLMERFKEDPRSDKVNLSIGLYYNEDGIIP QLKAVAEAEARLNAQPHGASLYLPMEGLNSYRHAIAPLLFGADHPVLQQQRVATIQTL GGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFEVSTYPWYDEVTNSVRF NDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGF SAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVLCEDAEAAGRVLGQL KATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEM PERNFDYLLNQRGMFSYTGLSAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKA FAAVM" misc_feature complement(4321477..4322667) /gene="tyrB" /locus_tag="SF4151" /note="aromatic amino acid transaminase; Region: PRK09257" /db_xref="CDD:181731" misc_feature complement(order(4321903..4321905,4321927..4321932, 4321936..4321938,4322023..4322025,4322116..4322118, 4322275..4322277,4322353..4322361)) /gene="tyrB" /locus_tag="SF4151" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(4321786..4321788,4321795..4321797, 4321903..4321911,4322044..4322046,4322245..4322247, 4322350..4322352)) /gene="tyrB" /locus_tag="SF4151" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(4321927..4321929) /gene="tyrB" /locus_tag="SF4151" /note="catalytic residue [active]" /db_xref="CDD:99734" gene complement(4322920..4323999) /gene="alr" /locus_tag="SF4152" /db_xref="GeneID:1025471" CDS complement(4322920..4323999) /gene="alr" /locus_tag="SF4152" /note="Code: M; COG: COG0787" /codon_start=1 /transl_table=11 /product="alanine racemase" /protein_id="NP_709867.1" /db_xref="GeneID:1025471" /translation="MQAATVVINRRALRHNLQRLRELAPASKMVAVVKANAYGHGLLE TARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISAQHFHTAVHNE EQLAALEEASLDEPVTVWMKLDTGMHRLGVRPEQAEAFYHRLTQCKNVRQPVNIVSHF ARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPGIILYGVS PLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVAMGYGD GYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPQAQDKAGDPVILWGEGLPVERI AEMTKVSAYELITRLTSRVAMKYVD" misc_feature complement(4322926..4323993) /gene="alr" /locus_tag="SF4152" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases; Region: PLPDE_III_AR_proteobact; cd06827" /db_xref="CDD:143500" misc_feature complement(order(4322971..4322973,4323364..4323375, 4323415..4323423,4323523..4323525,4323529..4323531, 4323613..4323615,4323634..4323636,4323766..4323768, 4323886..4323888,4323898..4323900,4323904..4323906)) /gene="alr" /locus_tag="SF4152" /note="active site" /db_xref="CDD:143500" misc_feature complement(order(4322971..4322973,4323364..4323369, 4323373..4323375,4323418..4323423,4323523..4323525, 4323766..4323768,4323886..4323888,4323898..4323900, 4323904..4323906)) /gene="alr" /locus_tag="SF4152" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature complement(order(4322971..4322973,4323523..4323525, 4323613..4323615,4323886..4323888,4323898..4323900)) /gene="alr" /locus_tag="SF4152" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature complement(order(4323235..4323237,4323898..4323900)) /gene="alr" /locus_tag="SF4152" /note="catalytic residues [active]" /db_xref="CDD:143500" misc_feature complement(order(4322944..4322946,4322953..4322955, 4322968..4322973,4322977..4322979,4323088..4323090, 4323094..4323096,4323160..4323162,4323178..4323180, 4323193..4323195,4323232..4323240,4323244..4323249, 4323265..4323267,4323274..4323276)) /gene="alr" /locus_tag="SF4152" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143500" gene complement(4324052..4325467) /gene="dnaB" /locus_tag="SF4154" /db_xref="GeneID:1025050" CDS complement(4324052..4325467) /gene="dnaB" /locus_tag="SF4154" /note="Code: L; COG: COG0305" /codon_start=1 /transl_table=11 /product="replicative DNA helicase" /protein_id="NP_709868.1" /db_xref="GeneID:1025050" /translation="MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLD NERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGG FAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDL AESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKT AGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASL SRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREH GGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQR ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR LTFNGQWSRFDNYAGPQYDDE" misc_feature complement(4324055..4325467) /gene="dnaB" /locus_tag="SF4154" /note="replicative DNA helicase DnaB; Region: PRK08006" /db_xref="CDD:181193" gene 4325550..4326533 /gene="qor" /locus_tag="SF4153" /db_xref="GeneID:1023425" CDS 4325550..4326533 /gene="qor" /locus_tag="SF4153" /note="Code: CR; COG: COG0604" /codon_start=1 /transl_table=11 /product="NADPH-dependent quinone oxidoreductase" /protein_id="NP_709869.2" /db_xref="GeneID:1023425" /translation="MATRIEFHKHGGPEVLQAVEFTPADPAENEIQVENKAIGINFID TYIRSGLYPPPSLPSGLGTEAAGIVSKVGSGVKHIKAGDHVVYAQSALGAYSSVHNIN ADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGIGLIACQW AKALGAKLIGTVGTAQKAQSALKAGAWQVINYREENLVERLKEITGGKKVRVVYDSVG RDTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTREEL TEASNELFSLIASGVIKVDVAEQQKYPLKDAQRAHEILESRATQGSSLLIP" misc_feature 4325550..4326530 /gene="qor" /locus_tag="SF4153" /note="NADPH:quinone reductase; Region: PRK10754" /db_xref="CDD:182701" misc_feature order(4325670..4325675,4325685..4325687,4325916..4325918, 4325928..4325930,4325937..4325939,4325991..4325993, 4326000..4326008,4326063..4326068,4326078..4326080, 4326123..4326125,4326195..4326200,4326261..4326275, 4326336..4326347,4326492..4326494,4326498..4326500) /gene="qor" /locus_tag="SF4153" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:176189" misc_feature order(4325952..4325954,4326240..4326245,4326282..4326299, 4326321..4326344,4326351..4326356) /gene="qor" /locus_tag="SF4153" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176189" gene complement(4326699..4326941) /gene="yjbO" /locus_tag="SF4155" /db_xref="GeneID:1025427" CDS complement(4326699..4326941) /gene="yjbO" /locus_tag="SF4155" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709870.4" /db_xref="GeneID:1025427" /translation="MLELLFVIGFFVMLMVTGVSLLGIIAALVVATAIMFLGGMLALM IKLLPWLLLAIAVVWVIKAIKAPKMPKYQRYDRWRY" misc_feature complement(4326753..4326941) /gene="yjbO" /locus_tag="SF4155" /note="Phage shock protein G (Phageshock_PspG); Region: Phageshock_PspG; pfam09583" /db_xref="CDD:430698" gene complement(4327075..4328094) /gene="yjbN" /locus_tag="SF4156" /db_xref="GeneID:1025858" CDS complement(4327075..4328094) /gene="yjbN" /locus_tag="SF4156" /note="Code: R; COG: COG0042" /codon_start=1 /transl_table=11 /product="tRNA-dihydrouridine synthase A" /protein_id="NP_709871.2" /db_xref="GeneID:1025858" /translation="MQKINQTSAMPEKTDVHWSGRFSVAPMLDWTDRHCRYFLRLLSR NTLLYTEMVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAALAQCAKLAEARGYDEI NLNVGCPSDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYEF LCDFINTVSGKGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMS INGGIKSLEEAKAHLQHMDGVMVGREAYQNPGILAAVDREIFGSSDTDADPVAVVRAM YPYIEHELSQGTYLGHIIRHMLGLFQGIPGARQWRRYLSENAHKAGADINVLEHALKL VADKR" misc_feature complement(4327081..4328067) /gene="yjbN" /locus_tag="SF4156" /note="tRNA dihydrouridine(20/20a) synthase DusA; Region: PRK11815" /db_xref="CDD:236991" gene complement(4328475..4329182) /gene="yjbM" /locus_tag="SF4157" /db_xref="GeneID:1026566" CDS complement(4328475..4329182) /gene="yjbM" /locus_tag="SF4157" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709872.1" /db_xref="GeneID:1026566" /translation="MWVNKYTDDCTDEDLNDRDFIASVVDRAIFHFAINSICNPGDNK DAMPIEQCTFDVETKNGLPSTVQLFYEESKDNEPLANIHFQAIGSGFLTFVNACQEHD DNSLKLFASLLISLSYSSAYADLSETVYINENNESYLKAQFEKLYQRDMKKYLGEMKR LADGGEMNFDGYLDKMSHLVNEGTLDPDILSKMRDAAPQLISFAKSFDPTSKEEIKIL TDTSKLIYDLFGVKSEK" misc_feature complement(4328478..4329182) /gene="yjbM" /locus_tag="SF4157" /note="Protein of unknown function (DUF2713); Region: DUF2713; pfam10897" /db_xref="CDD:313960" gene complement(4329206..4329460) /gene="yjbL" /locus_tag="SF4158" /db_xref="GeneID:1025422" CDS complement(4329206..4329460) /gene="yjbL" /locus_tag="SF4158" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709873.1" /db_xref="GeneID:1025422" /translation="MLKIIPGATGYFNKTLNSNQFENKDATKDKLDNRGSIKGKLNNI YGKSIDYAALRHRDIIIAKIDLFIQRITHNLWHARKKMCF" gene 4329718..4330293 /gene="yjbK" /locus_tag="SF4159" /db_xref="GeneID:1026802" CDS 4329718..4330293 /gene="yjbK" /locus_tag="SF4159" /note="Code: P; COG: COG0735" /codon_start=1 /transl_table=11 /product="regulator" /protein_id="NP_709874.3" /db_xref="GeneID:1026802" /translation="MFFLEHGKVRTFLTPTLRCPMEKTTTQELLAQAEKICAQRNVRL TPQRLEVLRLMSLQDGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVHKVEST NSYVLCHLFDQPTHTSAMFICDRCGAVKEECAEGVEDIMHTLAAKMGFALRHNVIEAH GLCAACVEVEACRHPEQCQHDHSVQVKKKPR" misc_feature 4329778..4330284 /gene="yjbK" /locus_tag="SF4159" /note="zinc uptake transcriptional repressor Zur; Region: PRK11639" /db_xref="CDD:183251" gene complement(4330335..4330544) /gene="yjbJ" /locus_tag="SF4160" /db_xref="GeneID:1025480" CDS complement(4330335..4330544) /gene="yjbJ" /locus_tag="SF4160" /note="Code: S; COG: COG3237" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709875.2" /db_xref="GeneID:1025480" /translation="MNKDEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQ ERYGYQKDQAEKEVVDWETRNEYRW" misc_feature complement(4330338..4330544) /gene="yjbJ" /locus_tag="SF4160" /note="hypothetical protein; Provisional; Region: PRK10428" /db_xref="CDD:182452" gene complement(4330660..4332039) /gene="dinF" /locus_tag="SF4161" /db_xref="GeneID:1027379" CDS complement(4330660..4332039) /gene="dinF" /locus_tag="SF4161" /note="Code: Q; COG: COG0534" /codon_start=1 /transl_table=11 /product="DNA-damage-inducible protein F" /protein_id="NP_709876.3" /db_xref="GeneID:1027379" /translation="MPLGVAVCFSSLFIRLVCMAFLTSSDKALWHLALPMIFSNITVP LLGLVDTAVIGHLDSPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAYGAKNPQA LARALVQPLLLALGAGALIALLRTPIIDLALHIVGGSEAVLEQARRFLEIRWLSAPAS LANLVLLGWLLGVQYARAPVILLVVGNILNIVLDVWLVMGLHMNVQGAALATVIAEYA TLLIGLLMVRKILKLRGISGEMLKTAWRGNFRRLLALNRDIMLRSLLLQLCFGAITVL GARLGSDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACR QSGIVALLFSVVYLLAGEHIIALLTSLTQIQQLADRYLIWQVILPLVGVWCYLLDGMF IGATRAAEMRNSMAVAAAGFALTLLTLPWLGNHGLWLALTVFLALRGLSLAAIWRRHW RNGTWFAAT" misc_feature complement(4330663..4331985) /gene="dinF" /locus_tag="SF4161" /note="DNA-damage-inducible SOS response protein; Provisional; Region: PRK10367" /db_xref="CDD:182413" gene complement(4332058..4332666) /gene="lexA" /locus_tag="SF4162" /db_xref="GeneID:1025656" CDS complement(4332058..4332666) /gene="lexA" /locus_tag="SF4162" /note="Code: KT; COG: COG1974" /codon_start=1 /transl_table=11 /product="LexA repressor" /protein_id="NP_709877.1" /db_xref="GeneID:1025656" /translation="MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAE EHLKALARKGVIEIVSGASRGIRLLQEEEEGLPLVGRVAAGEPLLAQQHIEGHYQVDP SLFKPNADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK QGNKVELLPENSEFKPIVVDLRQQSFTIEGLAVGVIRNGDWL" misc_feature complement(4332067..4332666) /gene="lexA" /locus_tag="SF4162" /note="SOS regulatory protein LexA; Region: lexA; TIGR00498" /db_xref="CDD:273106" gene complement(4332776..4333144) /gene="dgkA" /locus_tag="SF4163" /db_xref="GeneID:1023428" CDS complement(4332776..4333144) /gene="dgkA" /locus_tag="SF4163" /note="Code: M; COG: COG0818" /codon_start=1 /transl_table=11 /product="diacylglycerol kinase" /protein_id="NP_709878.1" /db_xref="GeneID:1023428" /translation="MANNTTGFTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVV IACWLDVDAITRVLLISSVMLVMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAV LIAIIVAVITWCILLWSHFG" misc_feature complement(4332794..4333120) /gene="dgkA" /locus_tag="SF4163" /note="Integral membrane diacylglycerol kinase; Region: DAGK_IM; cd14264" /db_xref="CDD:260133" misc_feature complement(order(4332842..4332844,4332848..4332853, 4332857..4332865,4332899..4332904,4332914..4332916, 4332923..4332928,4332935..4332937,4333040..4333042, 4333046..4333048,4333055..4333057,4333082..4333084, 4333091..4333093,4333103..4333105,4333118..4333120)) /gene="dgkA" /locus_tag="SF4163" /note="putative active site [active]" /db_xref="CDD:260133" misc_feature complement(order(4332797..4332802,4332809..4332811, 4332821..4332823,4332830..4332835,4332842..4332847, 4332854..4332856,4332863..4332865,4332872..4332877, 4332881..4332883,4332896..4332901,4332905..4332913, 4332917..4332925,4332929..4332934,4332938..4332943, 4332953..4332955,4332962..4332964,4332971..4332976, 4332980..4332988,4333070..4333075,4333079..4333099)) /gene="dgkA" /locus_tag="SF4163" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:260133" misc_feature complement(order(4332857..4332862,4332902..4332904, 4332914..4332916,4332935..4332937,4333058..4333060, 4333085..4333087)) /gene="dgkA" /locus_tag="SF4163" /note="putative active site [active]" /db_xref="CDD:260133" misc_feature complement(order(4332914..4332916,4333058..4333060)) /gene="dgkA" /locus_tag="SF4163" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:260133" gene 4333255..4335738 /gene="plsB" /locus_tag="SF4164" /db_xref="GeneID:1027365" CDS 4333255..4335738 /gene="plsB" /locus_tag="SF4164" /note="Code: I; COG: COG2937" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate acyltransferase" /protein_id="NP_709879.4" /db_xref="GeneID:1027365" /translation="MTFCYPCRAFALLTRGFTSFMSGWPRIYYKLLNLPLSILVKSKS IPADPAPELGLDTSRPIMYVLPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGTLLPRY VFIHGGPRVFTYYTPKEESIKLFHDYLDLHRSNPNLDVQMVPVSVMFGRAPGREKGEV NPPLRMLNGVQKFFAVLWLGRDSFVRFSPSVSLRRMADEHGTDKTIAQKLARVARMHF ARQRLAAVGPRLPARQDLFNKLLASRAIAKAVEDEARSKKISHEKAQQNAIALMEEIA ANFSYEMIRLTDRILGFTWNRFYQGINVHNAERVRQLAHDGHELVYVPCHRSHMDYLL LSYVLYHQGLVPPHIAAGINLNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGE LFSRGYSVEYFVEGGRSRTGRLLDPKTGTLSMTIQAMLRGGTRPITLIPIYIGYEHVM EVGTYAKELRGATKEKESLPQMLRGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPDWRE SIDPIEAVRPAWLTPTVNNIAADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLT EQLNCYLDLMRNVPYSTDSTVPSASASELIDHALQMNKFEVEKDTIGDIIILPREQAV LMTYYRNNIAHMLVLPSLMAAIVTQHRHISRDVLMEHVNVLYPMLKAELFLRWDRDEL PDVIDALANEMQRQGLITLQDDELHINPAHSRTLQLLAAGARETLQRYAITFWLLSAN PSINRGTLEKESRTVAQRLSVLHGINAPEFFDKAVFSSLVLTLRDEGYISDSGDAEPA ETMKVYQLLAELITSDVRLTIESATQGEG" misc_feature 4333315..4335732 /gene="plsB" /locus_tag="SF4164" /note="glycerol-3-phosphate 1-O-acyltransferase PlsB; Region: PRK04974" /db_xref="CDD:235325" misc_feature order(4334230..4334232,4334239..4334241,4334245..4334247, 4334308..4334319,4334470..4334478) /gene="plsB" /locus_tag="SF4164" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153255" gene complement(4335893..4336765) /gene="ubiA" /locus_tag="SF4165" /db_xref="GeneID:1025859" CDS complement(4335893..4336765) /gene="ubiA" /locus_tag="SF4165" /note="Code: H; COG: COG0382" /codon_start=1 /transl_table=11 /product="4-hydroxybenzoate octaprenyltransferase" /protein_id="NP_709880.1" /db_xref="GeneID:1025859" /translation="MEWSLTQNKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGVP QLWIMAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTANRPLPSGAVTEKEARALFVV LVLISFLLVLTLNTMTILLSIAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAA VSESVPLSCWLMFLANILWAVAYDTQYAMVDRDDDVKIGIKSTAILFGQYDKLIIGIL QIGVLALMAIIGELNGLGWGYYWSIVVAGALFVYQQKLIANREREACFKAFMNNNYVG LVLFLGLAMSYWHF" misc_feature complement(4335902..4336738) /gene="ubiA" /locus_tag="SF4165" /note="4-hydroxybenzoate polyprenyl transferase, proteobacterial; Region: ubiA_proteo; TIGR01474" /db_xref="CDD:130539" gene complement(4336778..4337275) /gene="ubiC" /locus_tag="SF4166" /db_xref="GeneID:1027013" CDS complement(4336778..4337275) /gene="ubiC" /locus_tag="SF4166" /note="Code: H; COG: COG3161" /codon_start=1 /transl_table=11 /product="chorismate pyruvate lyase" /protein_id="NP_709881.2" /db_xref="GeneID:1027013" /translation="MSHPALTQLRALRYFKEIPALDPQLLDWLLLEDSMTKRFEQQGK TVSVTMIREGFVEQNEIPEELPLLPKESRYWLREILLCADGEPWLAGRTVVPVSTLSG PELALQKLGKTPLGRYLFTSSTLTRDFIEIGRDAGLWGRRSRLRLSGKPLLLTELFLP ASPLY" misc_feature complement(4336781..4337275) /gene="ubiC" /locus_tag="SF4166" /note="chorismate pyruvate lyase; Provisional; Region: ubiC; PRK11655" /db_xref="CDD:236949" gene complement(4337498..4338822) /gene="yjbI" /locus_tag="SF4167" /pseudo /db_xref="GeneID:1025117" misc_feature complement(4337498..4338822) /gene="yjbI" /locus_tag="SF4167" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790471 (443 aa). BLAST with identity of 98% in 441 aa. This CDS contains an in-frame stop codon. The sequence has been checked and is believed to be correct." /pseudo gene complement(4339307..4340227) /gene="malM" /locus_tag="SF4168" /db_xref="GeneID:1025102" CDS complement(4339307..4340227) /gene="malM" /locus_tag="SF4168" /codon_start=1 /transl_table=11 /product="maltose regulon periplasmic protein" /protein_id="NP_709882.2" /db_xref="GeneID:1025102" /translation="MKMNKSLIALCLSAGLLASAPGISLADVNYVPQNTSDAPAIPSA ALQQLTWTPVDQSKTQTTQLATGGQQLNVPGISGPVAAYSVPANIGELTLTLTSEVNK QTSVFAPNVLILDQNMTPSAFFPSSYFTYQELGVMSADRLEGVMRLTPALGQQKLYVL VFTTEKDLQQTTQLLDPAKAYAKGVGNSIPDIPDPVARHTSDGLLKLKVKTNSSSSVL VGPLFGSSAPAPVTVGNTAAPAVAAPAPVPVKKSEPMLNDTESYFNTAIKNAVAKGDV DKALKLLDEAERLGSTSARSTFISSVKGKG" misc_feature complement(4339310..4340224) /gene="malM" /locus_tag="SF4168" /note="maltose operon protein MalM; Region: PRK10564" /db_xref="CDD:236716" gene complement(4340379..4341716) /gene="lamB" /locus_tag="SF4169" /db_xref="GeneID:1024752" CDS complement(4340379..4341716) /gene="lamB" /locus_tag="SF4169" /codon_start=1 /transl_table=11 /product="maltoporin" /protein_id="NP_709883.2" /db_xref="GeneID:1024752" /translation="MITLRKLPLAVAVAAGVMSAQAMAVDFHGYARSGIGWTGSGGEQ QCFQTTGAQSKYRLGNECETYAELKLGQEVWKEGDKSFYFDTNVAYSVAQQNDWEATD PAFREANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGLENIDVGF GKLSLAATRSSEAGGSSSFASNNIYDYTNETANDVFDVRLAQMEINPGGTLELGVDYG RANLRDNYRLVDGASKDGWLFTAEHTQSVLKGFNKFVVQYATDSMTSQGKGLSQGSGV AFDNEKFAYNINNNGHMLRILDHGAISMGDNWDMMYVGMYQDINWDNDNGTKWWTVGI RPMYKWTPIMSTVMEIGYDNVESQRTGDKNNQYKITLAQQWQAGDSIWSRPAIRVFAT YAKWDEKWGYDYNGDSKVNPNYGKAVPADFNGGSFGRGDSDEWTFGAQMEIWW" misc_feature complement(4340382..4341716) /gene="lamB" /locus_tag="SF4169" /note="maltoporin LamB; Region: lamB; PRK09360" /db_xref="CDD:236481" gene complement(4341791..4342906) /gene="malK" /locus_tag="SF4170" /db_xref="GeneID:1026590" CDS complement(4341791..4342906) /gene="malK" /locus_tag="SF4170" /note="Code: G; COG: COG1130" /codon_start=1 /transl_table=11 /product="maltose ABC transporter ATP-binding protein" /protein_id="NP_709884.2" /db_xref="GeneID:1026590" /translation="MASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKST LLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKL AGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP LELYHYPADRFVAGFIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQ VGANMSLGIRPEHLLPSDIADVILEGEVQVVEQLGNETQIYIQIPSIRQNLVYRQNDV VLVEEGATFAIGLPPERCHLFREDGTACRRLHKEPGV" misc_feature complement(4341794..4342906) /gene="malK" /locus_tag="SF4170" /note="maltose/maltodextrin ABC transporter ATP-binding protein MalK; Region: PRK11000" /db_xref="CDD:182893" gene 4343271..4344461 /gene="malE" /locus_tag="SF4171" /db_xref="GeneID:1025235" CDS 4343271..4344461 /gene="malE" /locus_tag="SF4171" /note="Code: G; COG: COG2182" /codon_start=1 /transl_table=11 /product="maltose ABC transporter substrate-binding protein" /protein_id="NP_709885.1" /db_xref="GeneID:1025235" /translation="MKIKTGARILALSALTTMMFSASALAKIEEGKLVIWINGDKGYN GLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQSGLL AEITPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLLPNPPKTWEEIPA LDKELKAKGKSALMFNLQEPYFTWPLIAADGGYAFKYENGKYDIKDVGVDNAGAKAGL TFLVDLIKNKHMNADTDYSIAEAAFNKGETAMTINGPWAWSNIDTSKVNYGVTVLPTF KGQPSKPFVGVLSTGINAASPNKELAKEFLENYLLTDEGLEAVNKDKPLGAVALKSYE EELAKDPRIAATMENAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDEALKDAQT RITK" misc_feature 4343271..4344458 /gene="malE" /locus_tag="SF4171" /note="maltose/maltodextrin ABC transporter substrate-binding protein MalE; Region: malE; PRK09474" /db_xref="CDD:236533" misc_feature order(4343382..4343384,4343388..4343393,4343532..4343534, 4343541..4343546,4343679..4343681,4343805..4343816, 4344036..4344038,4344336..4344338,4344366..4344368, 4344378..4344380) /gene="malE" /locus_tag="SF4171" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270374" gene 4344615..4346159 /gene="malF" /locus_tag="SF4172" /db_xref="GeneID:1023460" CDS 4344615..4346159 /gene="malF" /locus_tag="SF4172" /note="Code: G; COG: COG1175" /codon_start=1 /transl_table=11 /product="maltose transporter membrane protein" /protein_id="NP_709886.2" /db_xref="GeneID:1023460" /translation="MDVIKKKHWWQSDALKWSVLGLLGLLVGYLVVLMYAQGEYLFAI TTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLVCTIAIAFTNYSSTNQLTF ERAQEVLLDRSWQAGKTYNFGLYPAGDEWQLALSDGETGKNYLSDAFKFGGEQKLQLK ETTAQPEGERANLRVITQNRQALSDITAILPDGNKVMMSSLRQFSGTQPLYTLDGDGT LTNNQSGVKYRPNNQIGFYQSITADGNWGDEKLSPGYTVTTGWKNFTRVFTDEGIQKP FLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEALRGKAVYRVLLILPYAVPSFISIL IFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLL KAIPDDLYEASAMDGAGLFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNG GPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKA TRMKFD" misc_feature 4344615..4346156 /gene="malF" /locus_tag="SF4172" /note="maltose ABC transporter permease MalF; Region: malF; PRK10999" /db_xref="CDD:236816" gene 4346174..4347064 /gene="malG" /locus_tag="SF4173" /db_xref="GeneID:1025406" CDS 4346174..4347064 /gene="malG" /locus_tag="SF4173" /note="Code: G; COG: COG0395" /codon_start=1 /transl_table=11 /product="maltose ABC transporter permease" /protein_id="NP_709887.1" /db_xref="GeneID:1025406" /translation="MAMVQPKSQKARLFITHLLLLLFIAAIMFPLLMVVAISLRQGNF ATGSLIPEQISWDHWKLALGFSVEQADGRITPPPFPVLLWLWNSVKVAGISAIGIVAL STTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGEYIPFIGLNTHG GVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVV FILSFIAAITEVPVASLLLRDVNSYTLAVGMQQYLNPQNYLWGDFAAAAVMSALPITI VFLLAQRWLVNGLTAGGVKG" misc_feature 4346174..4347061 /gene="malG" /locus_tag="SF4173" /note="maltose ABC transporter permease MalG; Region: malG; PRK10998" /db_xref="CDD:182891" misc_feature order(4346474..4346479,4346486..4346491,4346504..4346506, 4346534..4346545,4346549..4346578,4346585..4346590, 4346594..4346596,4346672..4346677,4346681..4346683, 4346687..4346689,4346696..4346701,4346705..4346707, 4346717..4346722,4346729..4346731,4346780..4346782, 4346822..4346827,4346834..4346836,4346855..4346866, 4346873..4346878,4346915..4346920,4346948..4346953, 4346960..4346965,4346969..4346974,4346981..4346986, 4346993..4346995) /gene="malG" /locus_tag="SF4173" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(4346552..4346596,4346855..4346872) /gene="malG" /locus_tag="SF4173" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(4346594..4346596,4346657..4346659,4346873..4346875, 4346909..4346911,4346918..4346920,4346948..4346950) /gene="malG" /locus_tag="SF4173" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(4346732..4346770,4346786..4346791,4346801..4346803) /gene="malG" /locus_tag="SF4173" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 4347435..4348910 /gene="xylE" /locus_tag="SF4174" /db_xref="GeneID:1025497" CDS 4347435..4348910 /gene="xylE" /locus_tag="SF4174" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="D-xylose transporter XylE" /protein_id="NP_709888.1" /db_xref="GeneID:1025497" /translation="MNTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVA PQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKISAVLFFISGVGS AWPELGFTSINPDNTVPIYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIR GKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGRRYMFASECIPALLFLMLLY TVPESPRWLMSRGKQEQTESILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVG VIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIM TVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQASGIVALLSMLFYVAAFAMSWGPVCW VLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGC MGVLAALFMWKFVPETKGKTLEELEALWEPETKKTQQTATL" misc_feature 4347435..4348889 /gene="xylE" /locus_tag="SF4174" /note="D-xylose transporter XylE; Provisional; Region: xylE; PRK10077" /db_xref="CDD:182225" gene complement(4348954..4349364) /gene="yjbA" /locus_tag="SF4175" /db_xref="GeneID:1026939" CDS complement(4348954..4349364) /gene="yjbA" /locus_tag="SF4175" /note="Code: S; COG: COG3223" /codon_start=1 /transl_table=11 /product="phosphate-starvation-inducible protein PsiE" /protein_id="NP_709889.1" /db_xref="GeneID:1026939" /translation="MTSLSRPRVEFISTILQTVLNLGLLCLGLILVVFLGKETVHLAD VLFAPEQTSKYELVEGLVVYFLYFEFIALIVKYFQSGFHFPLRYFVYIGITAIVRLII VDHKSPLDVLIYSAAILLLVITLWLCNSKRLKRE" misc_feature complement(4348957..4349352) /gene="yjbA" /locus_tag="SF4175" /note="phosphate-starvation-inducible protein PsiE; Provisional; Region: PRK02833" /db_xref="CDD:235075" gene 4349634..4349912 /locus_tag="SF4175a" /db_xref="GeneID:16608371" CDS 4349634..4349912 /locus_tag="SF4175a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439295.1" /db_xref="GeneID:16608371" /translation="MKRNLIKVVKMKPYFAALMLSVSVLPAYAGPLGTADKADLPQSN VSSPMMAQSLRQPDLQPISTDRKTECFRLYTPDRKPGVNCVPDGSTGH" misc_feature 4349634..4349909 /locus_tag="SF4175a" /note="Uncharacterized protein family; Region: YjbT; pfam17089" /db_xref="CDD:293694" gene complement(4349959..4352055) /gene="yjbH" /locus_tag="SF4176" /db_xref="GeneID:1025417" CDS complement(4349959..4352055) /gene="yjbH" /locus_tag="SF4176" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709890.1" /db_xref="GeneID:1025417" /translation="MKKRHLLSLLALGISTACYGETYPAPIGPSQSDFGGVGLLQTPT ARMAREGELSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTRQYSSVEAFSGDQTY KDKAFDLKLRLWEESYWLPQVAVGARDIGGTGLFDAEYLVASKAWGPFDFTLGLGWGY LGTSGNVKNPLCSASDKYCYRDNSYKQAGSIDGSQMFHGPASLFGGVEYQTPWQPLRL KLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFN DLRPSYIDNARPQYQPQPQDAILQHSVVANQLTLLKYNAGLADPQIQAKGDTLYVTGE QVKYRDSREGIIRANRIVMNDLPDGIKTIRITENRLNMPQVTTETDVASLKNHLAGEP LGHETTLAHKRVEPVVPKSTEQGWYIDKSRFDFHIDPVLNQSVGGPENFYMYQLGVMG TADLWLTDHLLTTGSLFANLANNYDKFNYTNPPQDSHLPRVRTHVREYVQNDVYVNNL QANYFQHLGNGFYGQVYGGYLETMFGGAGAEVLYRPLDSNWAFGLDANYVKQRDWRSA KDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVV GGYATITNVSKEEYGEGDFTKGVYVSVPLDLFSSGPTRSRAAIGWTPLTRDGGQQLGR KFQLYDMTSDRSVNFR" misc_feature complement(4349980..4351968) /gene="yjbH" /locus_tag="SF4176" /note="Exopolysaccharide biosynthesis protein YbjH; Region: YjbH; pfam06082" /db_xref="CDD:428757" gene complement(4352055..4352792) /gene="yjbG" /locus_tag="SF4177" /db_xref="GeneID:1027619" CDS complement(4352055..4352792) /gene="yjbG" /locus_tag="SF4177" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709891.1" /db_xref="GeneID:1027619" /translation="MIKQTIVALLLSVGASSVFAAGTVKVFSNGSSEAKTLTGAEHLI DLVGQPRLANSWWPGAVISEELATAAALRQQQALLTRLAEQGADSSTDDAAAINALRQ QIQALKVTGRQKINLDPDIVRVAERGNPPLQGNYTLWVGPPPSTVTLFGLISHPGNQP FTPGRDVASYLSDQSLLSGADRSYAWVVYPDGRTQKAPVAYWNKRHVEPMPGSIIYVG LADSVWSETPDALNADILQTLTQRIPQ" misc_feature complement(4352364..4352735) /gene="yjbG" /locus_tag="SF4177" /note="Capsule biosynthesis GfcC, N-terminal; Region: Caps_syn_GfcC_N; pfam20616" /db_xref="CDD:466765" misc_feature complement(4352061..4352327) /gene="yjbG" /locus_tag="SF4177" /note="Capsule biosynthesis GfcC C-terminal; Region: Caps_syn_GfcC_C; pfam06251" /db_xref="CDD:461862" gene complement(4352789..4353457) /gene="yjbF" /locus_tag="SF4178" /db_xref="GeneID:1025383" CDS complement(4352789..4353457) /gene="yjbF" /locus_tag="SF4178" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709892.1" /db_xref="GeneID:1025383" /translation="MVILPLWRRVVKRPALILICLLLQACSATTKELGNSLWDSLFGT PGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFAEDGQQKWVTQDQATLVTQHGRLV KTLLGGDNLIEVNNLAADPLIKPAQIVDGATWTRTMGWTEYQQVRYATARSVFKWDGT DTVKVGSDETLVRVLDEEVSTDQARWHNRYWIDSEGQIRQSEQYLGADYFPVKTTLIK AAKQ" misc_feature complement(4352810..4353358) /gene="yjbF" /locus_tag="SF4178" /note="Group 4 capsule polysaccharide lipoprotein gfcB, YjbF; Region: YjbF; pfam11102" /db_xref="CDD:431654" gene complement(4353541..4353783) /gene="yjbE" /locus_tag="SF4179" /db_xref="GeneID:1025995" CDS complement(4353541..4353783) /gene="yjbE" /locus_tag="SF4179" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709893.1" /db_xref="GeneID:1025995" /translation="MKKVLYGIFAISALAATSAWAAPVQVGEAAESAATSVSAGSSSA TSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ" gene complement(4354246..4355895) /gene="pgi" /locus_tag="SF4180" /db_xref="GeneID:1025433" CDS complement(4354246..4355895) /gene="pgi" /locus_tag="SF4180" /note="Code: G; COG: COG0166" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate isomerase" /protein_id="NP_709894.2" /db_xref="GeneID:1025433" /translation="MKNINPTQTAAWQALQKHFDEMKDVTIADLFAKDGDRFSKFSAT FDDQMLVDYSKNRITEETLAKLQDLAKECDLAGAIKSMFSGEKINRTENRAVLHVALR NRSNTPILVDGKDVMPEVNAVLEKMKTFSEAIISGEWKGYTGKAITDVVNIGIGGSDL GPYMVTEALRPYKNHLNMHFVSNVDGTHISEVLKKVNPETTLFLVASKTFTTQETMTN AHSARDWFLKAAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSA IGLSIVLSIGFDNFVELLSGAHAMDKHFSTTPAEKNLPVLLALIGIWYNNFFGAETEA ILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNVVDYQTGPIIWGEPGTNGQHAFYQLI HQGTKMVPCDFIAPAITHNPLSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKD PATLDYVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFTFDQW GVELGKQLANRILPELKDDKEISSHDSSTNGLINRYKAWRG" misc_feature complement(4354249..4355892) /gene="pgi" /locus_tag="SF4180" /note="glucose-6-phosphate isomerase; Reviewed; Region: pgi; PRK00179" /db_xref="CDD:234679" gene 4356420..4357769 /gene="lysC" /locus_tag="SF4181" /db_xref="GeneID:1025064" CDS 4356420..4357769 /gene="lysC" /locus_tag="SF4181" /note="Code: E; COG: COG0527" /codon_start=1 /transl_table=11 /product="aspartate kinase" /protein_id="NP_709895.1" /db_xref="GeneID:1025064" /translation="MSEIVVSKFGGTSVADFDAMNRSADIVLSDANVRLVVLSASAGI TNLLVALAEGLEPGERFEKLDAIRNIQFAILERLRYPNVIREEIERLLENITVLAEAA ALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDVA ALAELAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVD IWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV GSSKDPRAGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILAR HNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALI GNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE" misc_feature 4356429..4357766 /gene="lysC" /locus_tag="SF4181" /note="aspartate kinase III; Validated; Region: PRK09084" /db_xref="CDD:236376" mobile_element 4357903..4360637 /mobile_element_type="insertion sequence:ISSfl4" gene complement(4357935..4359536) /locus_tag="SF4182" /db_xref="GeneID:1027375" CDS complement(4357935..4359536) /locus_tag="SF4182" /note="Code: R; COG: -" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 transposase" /protein_id="NP_709896.1" /db_xref="GeneID:1027375" /translation="MNNELPDDIELLKAMLRKQQSRLRQYACQVAGYEQEIERLKAQL DRLRRMLFGQSSEKKRHKLENQIRQAEKRLSELENRLNTARNLLEDASSVTDSPDTSP PSENPIASKPESPGRKSSRKPLPAELPRETHRLLPAETSCPACGGVLKEMGETISEQL DIINTAFKVIETIRPKLACSRCDVIVQAPLPPKPIERGYASAGLLARILVSKYMEHIP LYRQSEIYARQGVELSRNTMVRWVSEMADKLRPLYIALNDYVLEAGKVHADDTPVKVL APGNGKTKTGRLWVYVRDDRNAGSSLPAAVWFAYSADRKGEHPQLHLAKYQGVLQADA YAGYNVLYETGRVKEAGCLAHARRKIHDEDVRRPTEMTQEALRRIAELYDIEAEIRGS PAEERLAVRKARSVQLMQSLYDWIQLQRKTLSKHAEMAKAFDYILNHWNALNEFCRDG WVEIDNNIGENALRSVAVGRKNYLFFGSDKGGESAAIIYSLLVTCKQNEVEPEDWLRE VIEKLNDWPSNQVHELLPWNFSSVK" misc_feature complement(4359141..4359422) /locus_tag="SF4182" /note="Transposase C of IS166 homeodomain; Region: LZ_Tnp_IS66; pfam13007" /db_xref="CDD:463771" misc_feature complement(4357998..4359194) /locus_tag="SF4182" /note="IS66 family transposase; Region: transpos_IS66; NF033517" /db_xref="CDD:468053" gene complement(4359881..4360555) /locus_tag="SF4184" /db_xref="GeneID:1027366" CDS complement(4359881..4360555) /locus_tag="SF4184" /note="Code: R; COG: -" /codon_start=1 /transl_table=11 /product="insertion sequence element ISSfl4 transposase" /protein_id="NP_709898.1" /db_xref="GeneID:1027366" /translation="MNSQTTKDIPCFRSYLPDALRLRFEDKLTIRAIAQRLGLSHSTI HTLFQRFLASGIAWPLPDSVSFAQLDAILYANRKKELTEPQIREGSWRKERRTSYSRE FKVRLAKQALQPGAVVARIAREHDINNNLLFKWKSQYEDGLLSDDDIQECMPVPVALT DTPEPTRPVTNPFWRNKHDERPEGAPGNVPRCELHLKSGVVKLFDPLTPELLRALIRE MKGGIR" misc_feature complement(4359938..4360522) /locus_tag="SF4184" /note="IS66-like element accessory protein TnpA; Region: IS66_access_TnpA; NF038385" /db_xref="CDD:439678" mobile_element 4360638..4361954 /mobile_element_type="insertion sequence:IS2" gene 4360670..4361080 /locus_tag="SF4185" /db_xref="GeneID:1027786" CDS 4360670..4361080 /locus_tag="SF4185" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="IS2 repressor TnpA" /protein_id="NP_709899.3" /db_xref="GeneID:1027786" /translation="MIVLILVFRLVIGEQMIDVLGPEKRRRRTTQEKIAIVQQSFEPG MTVSLVARQHGVAASQLFLWRKQYQEGSLTAVAAGEQVVPASELAAAMKQIKELQRLL GKKTMENELLKEAVEYGRAKKWIAHAPLLPGDGE" misc_feature 4360715..4361077 /locus_tag="SF4185" /note="IS2 repressor TnpA; Reviewed; Region: PRK09413" /db_xref="CDD:181833" gene 4361038..4361943 /locus_tag="SF4186" /db_xref="GeneID:1027025" CDS 4361038..4361943 /locus_tag="SF4186" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="IS2 transposase TnpB" /protein_id="NP_709900.1" /db_xref="GeneID:1027025" /translation="MDSARALIARGWGVSLVSRCLRVSRAQLHVILRRTDDWMDGPRS RHTDDTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQNALL LERKPAVPPSKRAHTGRVAVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDREVLHW AVTTGGFNSETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSCYRANETRQFARMLGLE PKNTAVRSPESNGIAESFVKTIKRDYISIMPKPDGLTAAKNLAEAFEHYNEWHPHSAL GYRSPREYLRQRACNGLSDNRCLEI" misc_feature 4361038..4361940 /locus_tag="SF4186" /note="IS2 transposase TnpB; Reviewed; Region: PRK09409" /db_xref="CDD:181829" gene complement(4362143..4362829) /gene="yjiI" /locus_tag="SF4187" /db_xref="GeneID:1023490" CDS complement(4362143..4362829) /gene="yjiI" /locus_tag="SF4187" /note="Code: S; COG: COG1859" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709901.4" /db_xref="GeneID:1023490" /translation="MWKRFCAGLSCRKFINPVTMTLVNKNRKSRDENAMAKYNEKELA DTSKFLSFVLRHKPEAIGIVLDREGWADINKLILCAQKAGKRLTRALLDTVVATSDKK RFSYSSDGRCIRAVQGHSTSQVAISFAEKTPPQFLYHGTASRFLDEIKKQGLIAGDRH YVHLSADEATARKVGARHGSPVVLTVKAQEMAKRGIPFWQAENGVWLTSTVAVEFLEW SFMPTGVQKQ" misc_feature complement(4362179..4362715) /gene="yjiI" /locus_tag="SF4187" /note="RNA:NAD 2'-phosphotransferase, TPT1/KptA family [Translation, ribosomal structure and biogenesis]; Region: KptA; COG1859" /db_xref="CDD:441464" gene 4362965..4363660 /gene="yjiH" /locus_tag="SF4188" /db_xref="GeneID:1027780" CDS 4362965..4363660 /gene="yjiH" /locus_tag="SF4188" /note="Code: S; COG: COG3314" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709902.2" /db_xref="GeneID:1027780" /translation="MGIVMTQQGDAVAGELATEKVGIKGYLAFFLTIIFFPGVFSGTD SWWRVFDFSVLNGSFGQLPGANGATTSFRGVGGAGAKDGFLFALELAPSVILSLGIIS ITDGLGGLRAAQQLMTPVLKPLLGIPGICSLALIANLQNTDAAAGMTKELAQEGEITE RDKVIFAAYQTSGSAIITNYFSSGVAVFAFLGTSVIVPLAVILVFKFVGANILRVWLN FEERRNPTQGAQA" gene 4363657..4364118 /gene="yjiG" /locus_tag="SF4189" /db_xref="GeneID:1025520" CDS 4363657..4364118 /gene="yjiG" /locus_tag="SF4189" /note="Code: S; COG: COG0700" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709903.1" /db_xref="GeneID:1025520" /translation="MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKI TGLLDWVGHICEPVMALWGLPGEAATVLLAALMSMGGAVGVAASLATADALTGHDVTV LLPAMYLMGNPVQNVGRCLGTAEVNAKYYPHIITVCVINALLSIWVMQLIV" misc_feature 4363663..4364115 /gene="yjiG" /locus_tag="SF4189" /note="hypothetical protein; Provisional; Region: PRK10519" /db_xref="CDD:182513" gene 4364131..4365303 /gene="iadA" /locus_tag="SF4190" /db_xref="GeneID:1027486" CDS 4364131..4365303 /gene="iadA" /locus_tag="SF4190" /codon_start=1 /transl_table=11 /product="isoaspartyl dipeptidase" /protein_id="NP_709904.1" /db_xref="GeneID:1027486" /translation="MIDYTAAGFTLLQGAHLYAPEDRGICDVLVANGKIIAVASNIPS DIVPNCTVVDLSGQILCPGFIDQHVHLIGGGGEAGPTTRTPEVALSRLTEAGVTSVVG LLGTDSISRHPESLLAKTRALNEEGISAWMLTGAYHVPSRTITGSVEKDVAIIDRVIG VKCAISDHRSAAPDVYHLANMAAESRVGGLLGGKPGVTVFHMGDSKKALKPIYDLLEN CDVPISKLLPTHVNRNVPLFEQALEFARKGGTIDITSSIDEPVAPAEGIARAVQAGIP LARVTLSSDGNGSQPFFDDEGNLTHIGVAGFETLLETVQVLVKDYDFSISDALRPLTS SVAGFLNMSGKGEILPGNDADLLVMTPELRIEQVYARGKLMVKDGKACVKGTFETA" misc_feature 4364155..4365294 /gene="iadA" /locus_tag="SF4190" /note="isoaspartyl dipeptidase IadA; Region: isoAsp_dipep; TIGR01975" /db_xref="CDD:131030" misc_feature order(4364221..4364226,4364236..4364241,4364245..4364247, 4364470..4364472,4364479..4364481,4364491..4364493, 4364560..4364562,4364578..4364580,4364590..4364592, 4364596..4364598,4365181..4365183) /gene="iadA" /locus_tag="SF4190" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238633" misc_feature order(4364332..4364334,4364338..4364340,4364350..4364355, 4364359..4364361,4364446..4364448,4364614..4364616, 4364731..4364733,4364818..4364820,4364983..4364985, 4364995..4364997) /gene="iadA" /locus_tag="SF4190" /note="active site" /db_xref="CDD:238633" gene 4365368..4366279 /gene="yjiE" /locus_tag="SF4191" /db_xref="GeneID:1027605" CDS 4365368..4366279 /gene="yjiE" /locus_tag="SF4191" /note="Code: K; COG: COG0583" /codon_start=1 /transl_table=11 /product="cell density-dependent motility repressor" /protein_id="NP_709905.1" /db_xref="GeneID:1027605" /translation="MDDCGAVLHNIETKWLYDFLTLEKCRNFSQAAVSRNVSQPAFSR RIRALEQAIGVELFNRQVTPLQLSEQGKIFHSQIRHLLQQLESNLAELRGGSDYAQRK IKIAAAHSLSLGLLPSIISQMPPLFTWAIEAIDVDEAVDKLREGQSDCIFSFHDEDLL EAPFDHIRLFESQLFPVCASDEHGEALFNLAQPHFPLLNYSRNSYMVRLINRTLTRHS ELSFSTFFVSSMSELLKQVALDGCGIAWLPEYAIQQEIRSGQLVVLNRDEQVIPIQAY AYRMNTRMNPVAERFWRELRELEIVLS" misc_feature 4365368..4366276 /gene="yjiE" /locus_tag="SF4191" /note="hypochlorite stress DNA-binding transcriptional regulator HypT; Region: PRK10082" /db_xref="CDD:182228" gene complement(4366272..4366673) /gene="iraD" /locus_tag="SF4192" /db_xref="GeneID:1025039" CDS complement(4366272..4366673) /gene="iraD" /locus_tag="SF4192" /codon_start=1 /transl_table=11 /product="DNA replication/recombination/repair protein" /protein_id="NP_709906.2" /db_xref="GeneID:1025039" /translation="MRKMMRQSLQAVLPEISGNKTSLLRKSVCSDLLTLFNSPHSALP SLLVSGMPEWQVHNPSDKHLQSWYCRQLRSALLFHEPRIAALQVNLKEAYCHTLAISL EIMLYHDDEPLTFDLVWDNGGWRSATLENVS" misc_feature complement(4366299..4366505) /gene="iraD" /locus_tag="SF4192" /note="anti-adapter protein IraD; Region: iraD; PRK14128" /db_xref="CDD:184525" mobile_element complement(4366935..4367702) /mobile_element_type="insertion sequence:IS1" gene complement(4366950..4367345) /gene="insB" /locus_tag="SF4193" /db_xref="GeneID:1027386" CDS complement(4366950..4367345) /gene="insB" /locus_tag="SF4193" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709907.1" /db_xref="GeneID:1027386" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(4366953..4367342) /gene="insB" /locus_tag="SF4193" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4367372..4367647) /gene="insA" /locus_tag="SF4194" /db_xref="GeneID:1026194" CDS complement(4367372..4367647) /gene="insA" /locus_tag="SF4194" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709908.1" /db_xref="GeneID:1026194" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<4367375..4367626) /gene="insA" /locus_tag="SF4194" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4368114..4368944 /gene="yjiC" /locus_tag="SF4195" /db_xref="GeneID:1025437" CDS 4368114..4368944 /gene="yjiC" /locus_tag="SF4195" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709909.1" /db_xref="GeneID:1025437" /translation="MSMPLSNAANNQFNTNNHFLHHPKVDSELTRRYEYARLDTENIY LLPLARGNNHNYDGKSVVEIRKLNIGKQSWPFNYVTDTCREFNGITTTGRMLYRNLKI TSALDEIYGGICKKAHAATELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYA GTTIGYISTLPASQAKRWTNEQPRIDIYIDQIITVSGVANSSGFALAALLNANIEMGN DPIIGIEAYPGTAEIHSKMGYNVIPGDEDAPLKRMTLQPSSLPELFELKNGEWNYIGK " misc_feature 4368114..4368941 /gene="yjiC" /locus_tag="SF4195" /note="Protein of unknown function (DUF2686); Region: DUF2686; pfam10887" /db_xref="CDD:287818" gene complement(4369085..4369858) /gene="uxuR" /locus_tag="SF4196" /db_xref="GeneID:1023551" CDS complement(4369085..4369858) /gene="uxuR" /locus_tag="SF4196" /note="Code: K; COG: COG2186" /codon_start=1 /transl_table=11 /product="DNA-binding transcriptional repressor UxuR" /protein_id="NP_709910.1" /db_xref="GeneID:1023551" /translation="MKSVTSAQRPYQEVGAMIHDLIIKTPYNPGERLPPEREIAEMLD VTRTVVREALIMLEIKGLVEVRRGAGIYVLDSSGSHNTDSPDANVCNDAGPFELLQAR QLLESNIAEFAALQATREDIVKMRQALQLEERELASSAPGSSESGDMQFHLAIAEATH NSMLVELFRQSWQWRENNPMWIQLHSHLDDSLYRKEWLGDHKQILAALIKKDARAAKL AMWQHLENVKQRLLEFSNVDDIYFDGYLFDSWPLDKVDA" misc_feature complement(4369088..4369858) /gene="uxuR" /locus_tag="SF4196" /note="Uxu operon transcriptional regulator; Region: PRK10225" /db_xref="CDD:182318" gene complement(4370073..4371533) /gene="uxuB" /locus_tag="SF4197" /db_xref="GeneID:1024299" CDS complement(4370073..4371533) /gene="uxuB" /locus_tag="SF4197" /note="Code: G; COG: COG0246" /codon_start=1 /transl_table=11 /product="D-mannonate oxidoreductase" /protein_id="NP_709911.1" /db_xref="GeneID:1024299" /translation="MTTIVDSNLPVARPSWDHSRLESRIVHLGCGAFHRAHQALYTHH LLESTDSDWGICEVNLMPGNDRMLIENLKKQQLLYTVAEKGAESTELKIIGSMKEALH PEIDGCEGILNAMARPQTAIVSLTVTEKGYCADAASGQLDLNNPLIKHDLENPTAPKS AIGYIVEALRLRREKGLKAFTVMSCDNVRENGHVAKVAVLGLAQARDPQLAAWIEENV TFPCTMVDRIVPAATPETLQEIADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDKV GTQFVADVVPFEMMKLRMLNGSHSFLAYLGYLGGYETIADTMTNPDYRKAAFALMMQE QAPTLSMPEGTDLNAYATLLIERFSNPSLRHRTWQIAMDGSQKLPQRLLDPVRLHLQN GGSWRHLALGVAGWMGYTQGVDEQGNAIDVVDPMLAEFQKINAQYQGADRVKALLGLS GIFADDLPQNADFVGAVTSAYQQLCERGARECVAAL" misc_feature complement(4370076..4371533) /gene="uxuB" /locus_tag="SF4197" /note="D-mannonate oxidoreductase; Provisional; Region: PRK15037" /db_xref="CDD:184997" gene complement(4371614..4372798) /gene="uxuA" /locus_tag="SF4198" /db_xref="GeneID:1025400" CDS complement(4371614..4372798) /gene="uxuA" /locus_tag="SF4198" /note="Code: G; COG: COG1312" /codon_start=1 /transl_table=11 /product="mannonate dehydratase" /protein_id="NP_709912.2" /db_xref="GeneID:1025400" /translation="MEQTWRWYGPNDPVSLADVRQAGATGVVTALHHIPNGEVWSVEE ILKRKAIVEDAGLVWSVVESVPIHEDIKTHTGNYEQWIANYQQTLRNLAQCGIRTVCY NFMPVLDWTRTDLEYVLPDGSKALRFDQIEFAAFEMHILKRPGAEADYTEEEIAQAAE RFATMSDEDKARLTRNIIAGLPGAEEGYTLDQFRKHLELYKDIDKAKLRENFAVFLKA IIPVAEEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVDTVNSMANGFTMCTGSYG VRADNDLVDMIKQFGPRIYFTHLRSTMREDNPKTFHEAAHLNGDVDMYEVVKAIVEEE HRRKAEGKEDLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIQRAFF SR" misc_feature complement(4371623..4372798) /gene="uxuA" /locus_tag="SF4198" /note="D-mannonate dehydratase [Carbohydrate transport and metabolism]; Region: UxuA; COG1312" /db_xref="CDD:440923" gene 4373138..4374481 /gene="gntP" /locus_tag="SF4199" /db_xref="GeneID:1026849" CDS 4373138..4374481 /gene="gntP" /locus_tag="SF4199" /note="Code: GE; COG: COG2610" /codon_start=1 /transl_table=11 /product="fructuronate transporter" /protein_id="NP_709913.1" /db_xref="GeneID:1026849" /translation="MHVLNILWVVFGIGLMLILNLKFKINSMVALLVAALSVGMLAGM DLMSLLHTMKAGFGNTLGELAIIVVFGAVIGKLMVDSGAAHQIAHTLLARLGLRYVQL SVIIIGLIFGLAMFYEVAFIMLAPLVIVIAAEAKIPFLKLAIPAVAAATTAHSLFPPQ PGPVALVNAYGADMGMVYIYGVLVTIPSVICAGLILPKFLGNLERPTPSFLKADQPVD MNNLPSFGVSILVPLIPAIIMISTTIANIWLVKDTPAWEVVNFIGSSPIAMFIAMVVA FVLFGTARGHDMQWVMNAFESAVKSIAMVILIIGAGGVLKQTIIDTGIGDTIGMLMSH GNISPYIMAWLITVLIRLATGQGVVSAMTAAGIISAAILDPATGQLVGVNPALLVLAT AAGSNTLTHINDASFWLFKGYFDLSVKDTLKTWGLLELVNSVVGLIIVLIISMVA" misc_feature 4373138..4374478 /gene="gntP" /locus_tag="SF4199" /note="gluconate transporter GntP; Region: PRK10034" /db_xref="CDD:182203" gene complement(4374732..4375634) /gene="fimH" /locus_tag="SF4200" /db_xref="GeneID:1025472" CDS complement(4374732..4375634) /gene="fimH" /locus_tag="SF4200" /codon_start=1 /transl_table=11 /product="minor fimbrial subunit, D-mannose specific adhesin" /protein_id="NP_709914.1" /db_xref="GeneID:1025472" /translation="MKRAITLFAVLLMGWSVNAWSFACKTANGTAIPIGGGSANVYVN LAPVVNVGQNLVVDLSTQIFCHNDYPETITDYVTLQRGSAYGGVLSNFSGTVKYSGSS YPFPTTSETPRVVYNSRTDKPWPVALYLTPVSSAGGVAIKAGSLIAVLILRQTNNYNS DDFQFVWNIYANNDVVVPTGGCDVSARDVTVTLPDYPGSVPIPLTVYCAKSQNLGYYL SGTTADAGNSIFTNTASFSPAQGVGVQLTRNGTIIPANNTVSLGAVGTSAVSLGLTAN YARTGGQVTAGNVQSIIGVTFVYQ" misc_feature complement(order(4375146..4375148,4375152..4375154, 4375167..4375169,4375173..4375175,4375410..4375412, 4375416..4375418,4375428..4375436,4375530..4375532, 4375569..4375571)) /gene="fimH" /locus_tag="SF4200" /note="mannosyl binding site [chemical binding]; other site" /db_xref="CDD:198456" misc_feature complement(4375131..4375562) /gene="fimH" /locus_tag="SF4200" /note="FimH, mannose binding; Region: FimH_man-bind; pfam09160" /db_xref="CDD:430438" misc_feature complement(4374735..4375133) /gene="fimH" /locus_tag="SF4200" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" gene complement(4375654..4376157) /gene="fimG" /locus_tag="SF4201" /db_xref="GeneID:1025419" CDS complement(4375654..4376157) /gene="fimG" /locus_tag="SF4201" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="minor fimbrial subunit" /protein_id="NP_709915.2" /db_xref="GeneID:1025419" /translation="MKWCKRGYVLAAMLALASATIQAADVTITVNGKVVAKPCTVSTT NATVDLGDLYSFSLMSAGAASAWHDVALELTNCPVGTSRVTASFSGAADSTGYYKNQG TAQNIQLELQDDSGNTLNTGATKTVQVDDSSQSAHFPLQVRALTVNGGATQGTIQAVI SITYTYS" misc_feature complement(4375660..4376094) /gene="fimG" /locus_tag="SF4201" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" gene complement(4376170..4376700) /gene="fimF" /locus_tag="SF4202" /db_xref="GeneID:1027606" CDS complement(4376170..4376700) /gene="fimF" /locus_tag="SF4202" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="minor fimbrial subunit" /protein_id="NP_709916.2" /db_xref="GeneID:1027606" /translation="MRNKPFYLLCAFLWLAVSRVLAADSTITIRGYVRDNGCSVAAES TNFTVDLMENAAKQFNNIGATTPVVPFRILLSPCGNAVSAVKVGFTGVADSHNANLLA LENTVSAAAGLGIQLLNEQQNQIPLNAPSSAISWTTLTPGKPNTLNFYARLMATQVPV TAGHINATATFTLEYQ" misc_feature complement(4376173..4376694) /gene="fimF" /locus_tag="SF4202" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" misc_feature complement(4376710..4380122) /note="'Similar to Escherichia coli K12 outer membrane protein; export and assembly of type 1 fimbriae, interrupted gi: 1790772 (879 aa). BLAST with identity of 98% in 1137 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct.'" mobile_element complement(4378759..4379526) /mobile_element_type="insertion sequence:IS1" gene complement(4378774..4379169) /gene="insB" /locus_tag="SF4203" /db_xref="GeneID:1027031" CDS complement(4378774..4379169) /gene="insB" /locus_tag="SF4203" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709917.1" /db_xref="GeneID:1027031" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGCPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(4378777..4379166) /gene="insB" /locus_tag="SF4203" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4379196..4379471) /gene="insA" /locus_tag="SF4204" /db_xref="GeneID:1026579" CDS complement(4379196..4379471) /gene="insA" /locus_tag="SF4204" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709918.1" /db_xref="GeneID:1026579" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<4379199..4379450) /gene="insA" /locus_tag="SF4204" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(4380189..4380914) /gene="fimC" /locus_tag="SF4206" /db_xref="GeneID:1024082" CDS complement(4380189..4380914) /gene="fimC" /locus_tag="SF4206" /note="Code: N; COG: COG3121" /codon_start=1 /transl_table=11 /product="periplasmic chaperone" /protein_id="NP_709919.2" /db_xref="GeneID:1024082" /translation="MSNKNVNVRKSQEITFCLLAGILMFMAMMVAGRAEAGVALGATR VIYPAGQKQVQLAVTNNDENSTYLIQSWVENADGVKDGRFIVTPPLFAMKGKKENTLR ILDATNNQLPQDRESLFWMNVKAIPSMDKSKLTENMLQLAIISRIKLYYRPAKLALPP DQAAEKLRFRRSANSLTLINPTPYYLTVTELNAGTRVLENALVPPMGESTVKLPSDAG SNITYRTINDYGALTPKMTGVME" misc_feature complement(4380204..4380854) /gene="fimC" /locus_tag="SF4206" /note="molecular chaperone FimC; Region: PRK15195" /db_xref="CDD:185117" gene complement(4380951..4381589) /gene="fimI" /locus_tag="SF4207" /db_xref="GeneID:1026715" CDS complement(4380951..4381589) /gene="fimI" /locus_tag="SF4207" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="fimbrial protein" /protein_id="NP_709920.2" /db_xref="GeneID:1026715" /translation="MRMQPSRFSINNLPRFKDVITGRDAHPCAIKITMKRKRLFLLAS LLPMFALAGNKWNTTLPGGNMQFQGVIIAETCRIEAGDKQMTVNMGQISSNRFHAAGE DSAPVPFVIHLRECSTVVSERVGVAFHGVADGKNPDVLSVGEGPGIASNIGVALFDDE GNLVPINRPPANWKRLYSGSTSLHFIAKYRATGRRVTGGIANAQAWFSLTYQ" misc_feature complement(4380954..4381490) /gene="fimI" /locus_tag="SF4207" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" gene complement(4381555..4382103) /gene="fimA" /locus_tag="SF4208" /db_xref="GeneID:1025231" CDS complement(4381555..4382103) /gene="fimA" /locus_tag="SF4208" /note="Code: N; COG: COG3539" /codon_start=1 /transl_table=11 /product="major type 1 subunit fimbrin" /protein_id="NP_709921.1" /db_xref="GeneID:1025231" /translation="MKIKTLAIVVLSALSLSSAAALADTTTVNGGTIHFKGEVVNAAC AVDAGSVDQTVQLGQVRTASLKQAGATSSAVGFNIQLNDCDTTVATKAAVAFLGTAID ATRTDVLALQSSAAGSATNVGVQILDRTGNALTLDGATFSAQTTLNNGTNTIPFQARY YAIGEATPGAANADATFKVQYQ" misc_feature complement(4381558..4382103) /gene="fimA" /locus_tag="SF4208" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" gene complement(4382584..4383180) /gene="fimE" /locus_tag="SF4209" /db_xref="GeneID:1026397" CDS complement(4382584..4383180) /gene="fimE" /locus_tag="SF4209" /note="Code: L; COG: COG0582" /codon_start=1 /transl_table=11 /product="tyrosine recombinase" /protein_id="NP_709922.1" /db_xref="GeneID:1026397" /translation="MSKRRYLTGKEVQAMMQAVCYGATGARDYCLILLAYRHGMRISE LLDLHYQDLDLNEGRINIRRLKNGFSTVHPLRFDEREAVERWTQERANWKGADRTDAI FISRRGSRLSRQQAYRIIRDAGIEAGTVTQTHPHMLRHACGYELAERGADTRLIQDYL GHRNIRHTVRYTASNAARFAGLWERNNLINEKLKREEV" misc_feature complement(4382587..4383180) /gene="fimE" /locus_tag="SF4209" /note="tyrosine recombinase; Provisional; Region: PRK09871" /db_xref="CDD:182126" misc_feature complement(order(4382668..4382670,4382773..4382775, 4382830..4382832,4382836..4382838,4383055..4383060, 4383100..4383102)) /gene="fimE" /locus_tag="SF4209" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:271197" misc_feature complement(order(4382668..4382670,4382695..4382697, 4382764..4382766,4382773..4382775,4383058..4383060)) /gene="fimE" /locus_tag="SF4209" /note="active site" /db_xref="CDD:271197" gene complement(4383775..4384260) /gene="fimB" /locus_tag="SF4210" /db_xref="GeneID:1027482" CDS complement(4383775..4384260) /gene="fimB" /locus_tag="SF4210" /note="Code: L; COG: COG0582" /codon_start=1 /transl_table=11 /product="recombinase" /protein_id="NP_709923.1" /db_xref="GeneID:1027482" /translation="MRNKADNKKRNFLTHSEIESLLKAANTGPHATRNYCLILLCFIH GFRASEICRLRISDIDLKAKCIYIHRLKKGFSTTHPLLNKEVQALKNWLSIRTSYPHA ESEWVFLSRKGNPLSRQQFYHIISTSGGNAGLSLEIHPHMLRYSCGFALANMGIDTRL I" misc_feature complement(4383778..4384260) /gene="fimB" /locus_tag="SF4210" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain; Region: DNA_BRE_C; cl00213" /db_xref="CDD:469662" misc_feature complement(order(4383838..4383840,4383895..4383897, 4383901..4383903,4384117..4384122,4384162..4384164)) /gene="fimB" /locus_tag="SF4210" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:271175" gene 4385705..4386430 /gene="yjhA" /locus_tag="SF4211" /db_xref="GeneID:1024126" CDS 4385705..4386430 /gene="yjhA" /locus_tag="SF4211" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709924.3" /db_xref="GeneID:1024126" /translation="MKFMKKAKILSGVLLLCFSSPLISQAATLDVRGGYRSGSHAYET RLKVSEGWQNGWWASMESNTWNTIHDNKKENAALNDVQVEVNYAIKLDDQWTVRPGML THFSSNGTRYGPYVKLSWDATKDLNFGIRYRYDWKAYRQQDLSGDMSRDNVHRWDGYV TYHINSDFTFAWQTTLYSKQNDYRYANHKKWATENAFVLQYHMTPDITPYIEYDYLDR QGVYNGRDNLSENSYRIGVSFKL" misc_feature 4385783..4386421 /gene="yjhA" /locus_tag="SF4211" /note="Oligogalacturonate-specific porin protein (KdgM); Region: KdgM; cl11629" /db_xref="CDD:416341" gene 4386342..4387556 /gene="yjhT" /locus_tag="SF4212" /db_xref="GeneID:1025399" CDS 4386342..4387556 /gene="yjhT" /locus_tag="SF4212" /note="Code: S; COG: COG3055" /codon_start=1 /transl_table=11 /product="N-acetylneuraminic acid mutarotase" /protein_id="NP_709925.2" /db_xref="GeneID:1025399" /translation="MTTLTARVFTTAEIIYRKTVIALVCHLNCSRQETVTMNKTIMAL AIMMASFAANASVLPETPVPFKSGTGAIDNDTVYIGLGSAGTAWYKLDTQAKDKKWTA LAAFPGGPREQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAED YFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFE LDFTGNNLKWNKLDPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE GLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNSLLIIGGETAGGKAVTDSVL ISVKDNKVTVQN" misc_feature 4386459..4387553 /gene="yjhT" /locus_tag="SF4212" /note="N-acetylneuraminate epimerase; Region: PRK14131" /db_xref="CDD:237617" misc_feature 4386672..4386827 /gene="yjhT" /locus_tag="SF4212" /note="KELCH repeat [structural motif]; Region: KELCH repeat" /db_xref="CDD:276965" gene 4387621..4388601 /gene="yjhS" /locus_tag="SF4213" /db_xref="GeneID:1024065" CDS 4387621..4388601 /gene="yjhS" /locus_tag="SF4213" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709926.3" /db_xref="GeneID:1024065" /translation="MNAIISPDYYYVLTVAGQSNAMAYGEGLPLPDREDAPHSRIKQL ARFAHTHPGGPPCHFNDIIPLTHCPHDVQDMQGYHHPLATNHQTQYGTVGQALHIARK LLPFIPDNAGILIVPCCRGGSAFTAGSEGTYSERHGASHDACRWGTDTPLYQDLVSRT RAALAKNPQNKFLGVCWMQGEFDLMTSDYASHPQHFNHMVEAFRRDLKQYHSQLNNIT DAPWFCGDTTWYWKENFPHSYEAIYGNYQNNVLANIIFVDFQQQGERGLTNAPDEDPD DLSTGYYGSAYRSPENWTTALRSSHFSTAARRGIISDRFVEAILQFWRER" misc_feature 4387651..>4388247 /gene="yjhS" /locus_tag="SF4213" /note="Carbohydrate esterase, sialic acid-specific acetylesterase; Region: SASA; pfam03629" /db_xref="CDD:427409" mobile_element complement(4389055..4389822) /mobile_element_type="insertion sequence:IS1" gene complement(4389070..4389465) /gene="insB" /locus_tag="SF4214" /db_xref="GeneID:1025240" CDS complement(4389070..4389465) /gene="insB" /locus_tag="SF4214" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709927.1" /db_xref="GeneID:1025240" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESCLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(4389073..4389462) /gene="insB" /locus_tag="SF4214" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4389492..4389767) /gene="insA" /locus_tag="SF4215" /db_xref="GeneID:1024750" CDS complement(4389492..4389767) /gene="insA" /locus_tag="SF4215" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709928.1" /db_xref="GeneID:1024750" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<4389495..4389746) /gene="insA" /locus_tag="SF4215" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4389862..4390557 /locus_tag="SF4216" /db_xref="GeneID:1026744" CDS 4389862..4390557 /locus_tag="SF4216" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="DeoR family transcriptional regulator" /protein_id="NP_709929.2" /db_xref="GeneID:1026744" /translation="MLEVSVMTIRRDLHQEDEPLPLTLLGGYIVMVNKPAPSMPVIHD VPKNHRDDLPIAILAAGMVNENDLIFFDNGQEIPLVISMIPDAITFTGICYSHRVFVA LNEKPNVTAILCGGTYRARSDAFYDASNSSPLDSLNPRKIFISASGVHNHFGVSWFNP EDLATKRKVMNRGLRKILLARHALFDEVASASLAPISAFDVLISDRPLPADYVTHCQN GSVKIITPDSEDE" misc_feature 4389862..4390536 /locus_tag="SF4216" /note="DNA-binding transcriptional repressor DeoR; Provisional; Region: PRK10681" /db_xref="CDD:182644" gene 4391027..4391311 /locus_tag="SF4217" /db_xref="GeneID:1026743" CDS 4391027..4391311 /locus_tag="SF4217" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709930.1" /db_xref="GeneID:1026743" /translation="MPMSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYAW IKKYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDILKKAAAYFAKLSD" misc_feature 4391027..4391293 /locus_tag="SF4217" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 4391368..4392180 /locus_tag="SF4218" /db_xref="GeneID:1027038" CDS 4391368..4392180 /locus_tag="SF4218" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709931.1" /db_xref="GeneID:1027038" /translation="MLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGY RKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNP DAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWR RNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEGSMSRRGNCHDNAVAESFFQLLKRER IKKKIYGTREEARSDIFDYIEMFYNSKRRHGSSEQMSPTEYENQYYQRLGSV" misc_feature <4391371..4392147 /locus_tag="SF4218" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(4392202..4392432) /gene="yjfZ" /locus_tag="SF4219" /pseudo /db_xref="GeneID:1027493" misc_feature complement(4392202..4392432) /gene="yjfZ" /locus_tag="SF4219" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790648 (265 aa). BLAST with identity of 95% in 76 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(4392500..4392823) /locus_tag="SF4220" /db_xref="GeneID:1026735" CDS complement(4392500..4392823) /locus_tag="SF4220" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709932.1" /db_xref="GeneID:1026735" /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL KSPSYTKSVSWQHYRVIEPRLPTRCQSSPPSLVHRYIRDERFLILISFTIRYFHHFRK QTYFY" mobile_element 4392649..4393416 /mobile_element_type="insertion sequence:IS1" gene 4392898..4393401 /gene="insB" /locus_tag="SF4221" /db_xref="GeneID:1025864" CDS 4392898..4393401 /gene="insB" /locus_tag="SF4221" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709933.1" /db_xref="GeneID:1025864" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTAVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLVRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature 4393006..4393398 /gene="insB" /locus_tag="SF4221" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" mobile_element 4393522..4394770 /mobile_element_type="insertion sequence:IS911" gene 4393558..4393896 /locus_tag="SF4222" /db_xref="GeneID:1027360" CDS 4393558..4393896 /locus_tag="SF4222" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 transposase InsN" /protein_id="NP_709934.1" /db_xref="GeneID:1027360" /translation="MICSPQNNTGAPMKKRNFSAEFKRESAQLVVDQKYTVADAAKAM DVGLSTMTRWVKQLRDERQGKTPKASPITPEQIEIRELRKKLQRIEMENEILKKATAL LMSDSLNSSR" misc_feature 4393597..4393866 /locus_tag="SF4222" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 4393923..4394762 /locus_tag="SF4223" /db_xref="GeneID:1027778" CDS 4393923..4394762 /locus_tag="SF4223" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS911 integrase core domain-containing protein" /protein_id="NP_709935.1" /db_xref="GeneID:1027778" /translation="MVTLCHVFGVHRSSYRYWKNRPEKPDGRRAVLRSQVLELHGISH GSAGARSIATMATRRGYQMGRWLAGRLMKELGLVSCQQPTHRYKRGGHEHVAIPNYLE RQFAVTEPNQVWCGDVTYIWTGKRWAYLAVVLDLFARKPVGWAMSFSPDSRLTMKALE MAWETRGKPGGVMFHSDQGSHYTSRQFRQLLWRYQIRQSMSRRGNCWDNSPMERFFRS LKNEWMPVVGYVSFSEAAHAITDYIVGYYSALRPHEYNGGLPPNESENRYWKNSNSVA SFC" misc_feature 4393944..4394753 /locus_tag="SF4223" /note="putative transposase OrfB; Reviewed; Region: PHA02517" /db_xref="CDD:222853" gene complement(4394737..4395948) /locus_tag="SF4224" /db_xref="GeneID:1025241" CDS complement(4394737..4395948) /locus_tag="SF4224" /note="Code: L; COG: COG0582" /codon_start=1 /transl_table=11 /product="P4-type integrase" /protein_id="NP_709936.2" /db_xref="GeneID:1025241" /translation="MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRF GGKEKMLALGKYPEVSLADARARRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVV ARDWHASNQKWSASHSARVLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLE VAARLQQRTTAIMRFAVQSGLIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRID HYSGRPLTRLAVELTLLVFIRSSELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRG SKMRTPHLVPLSRQALSILEKIKSMSGNRELIFVGDHDPRKPMSENTVNKALRVMGYD TKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHQERSSVRAAYIHKAEHLGERRLM FEVVNKNWPPS" misc_feature complement(4394767..4395945) /locus_tag="SF4224" /note="Integrase/recombinase, includes phage integrase [Replication, recombination and repair, Mobilome: prophages, transposons]; Region: FimB; COG0582" /db_xref="CDD:440347" gene complement(4396147..4396231) /locus_tag="SF4545" /db_xref="GeneID:3161821" tRNA complement(4396147..4396231) /locus_tag="SF4545" /product="tRNA-Leu" /codon_recognized="UUG" /db_xref="GeneID:3161821" gene 4396385..4397446 /gene="yjgB" /locus_tag="SF4225" /db_xref="GeneID:1025179" CDS 4396385..4397446 /gene="yjgB" /locus_tag="SF4225" /note="Code: R; COG: COG1064" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_709937.2" /db_xref="GeneID:1025179" /translation="MLYTSQTTPEKAPKMSMIKSYAAKEAGGELEVYEYDPGELKPQD VEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVG IGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIES AGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAK EQEVLAMGADKVVNSRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVG AVLTPLSVPAFTLIAGDRSISGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDA IQHVRDGKARYRVVLKADF" misc_feature 4396439..4397434 /gene="yjgB" /locus_tag="SF4225" /note="Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283" /db_xref="CDD:176186" misc_feature order(4396547..4396555,4396562..4396564,4396880..4396882, 4396892..4396894,4396952..4396969,4397021..4397026, 4397036..4397038,4397081..4397083,4397138..4397143, 4397147..4397149,4397207..4397212,4397279..4397287) /gene="yjgB" /locus_tag="SF4225" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176186" misc_feature order(4396547..4396549,4396553..4396555,4396613..4396615, 4396697..4396699,4396880..4396882,4397285..4397287) /gene="yjgB" /locus_tag="SF4225" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:176186" misc_feature order(4396547..4396549,4396613..4396615,4396880..4396882) /gene="yjgB" /locus_tag="SF4225" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176186" misc_feature order(4396712..4396714,4396721..4396723,4396730..4396732, 4396754..4396756) /gene="yjgB" /locus_tag="SF4225" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176186" misc_feature order(4396751..4396753,4396901..4396903,4396913..4396915, 4397189..4397191,4397204..4397212,4397216..4397218, 4397243..4397245,4397249..4397254,4397261..4397284) /gene="yjgB" /locus_tag="SF4225" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176186" gene 4397527..4399077 /gene="yjgR" /locus_tag="SF4226" /db_xref="GeneID:1025405" CDS 4397527..4399077 /gene="yjgR" /locus_tag="SF4226" /note="Code: R; COG: COG0433" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709938.1" /db_xref="GeneID:1025405" /translation="MHSRCLYSRQETGGNLMSEPLLIARTPDTELFLLPGMANRHGLI TGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLTRLKNIGVN DWQPHANPVVVWDIFGEKGHTVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQ GLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEP MLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPK LVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVFGQLGNR VQHALRAFTPKDQKAVKTAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVE RAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNN PPVKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLG SLLGGRKR" misc_feature 4397581..4399074 /gene="yjgR" /locus_tag="SF4226" /note="Helicase HerA-like C-terminal; Region: HerA_C; pfam05872" /db_xref="CDD:428657" gene complement(4399196..4400278) /gene="yjgQ" /locus_tag="SF4227" /db_xref="GeneID:1025226" CDS complement(4399196..4400278) /gene="yjgQ" /locus_tag="SF4227" /note="Code: R; COG: COG0795" /codon_start=1 /transl_table=11 /product="lipopolysaccharide ABC transporter permease" /protein_id="NP_709939.2" /db_xref="GeneID:1025226" /translation="MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ GSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQV ALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNF VYIERVKGDEVLGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPK QITGSQTVSGTWKTDLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMW SKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYG IPPIIGALLPSASFFLISLWLLMRKS" misc_feature complement(4399202..4400260) /gene="yjgQ" /locus_tag="SF4227" /note="LPS export ABC transporter permease LptG; Region: LptG_lptG; TIGR04408" /db_xref="CDD:275201" gene complement(4400278..4401378) /gene="yjgP" /locus_tag="SF4228" /db_xref="GeneID:1027392" CDS complement(4400278..4401378) /gene="yjgP" /locus_tag="SF4228" /note="Code: R; COG: COG0795" /codon_start=1 /transl_table=11 /product="lipopolysaccharide ABC transporter permease LptF" /protein_id="NP_709940.2" /db_xref="GeneID:1027392" /translation="MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIP ANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAA MILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLF IESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTAL LRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTV FMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTV NLIYLALAIVLNLWDTVPVRRLRASFSRKGAV" misc_feature complement(4400341..4401372) /gene="yjgP" /locus_tag="SF4228" /note="LPS export ABC transporter permease LptF; Region: LptF_YjgP; TIGR04407" /db_xref="CDD:275200" gene 4401645..4403156 /gene="pepA" /locus_tag="SF4229" /db_xref="GeneID:1025421" CDS 4401645..4403156 /gene="pepA" /locus_tag="SF4229" /note="Code: E; COG: COG0260" /codon_start=1 /transl_table=11 /product="multifunctional aminopeptidase A" /protein_id="NP_709941.1" /db_xref="GeneID:1025421" /translation="MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYIS ALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLND TGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFN VPTRRELTSGERAIQHGQAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNV ITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDS GGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRP GDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHI TGLMTNHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITA GCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE" misc_feature 4401645..4403129 /gene="pepA" /locus_tag="SF4229" /note="multifunctional aminopeptidase A; Provisional; Region: PRK00913" /db_xref="CDD:234863" gene 4403290..4403733 /gene="holC" /locus_tag="SF4230" /db_xref="GeneID:1027003" CDS 4403290..4403733 /gene="holC" /locus_tag="SF4230" /note="Code: L; COG: COG2927" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit chi" /protein_id="NP_709942.2" /db_xref="GeneID:1027003" /translation="MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACE DEKQAYRLDEALWARPAESFVPHNLAGEGPRGSAPVEIAWPQKRSSSPRDILISLRTS FADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK" misc_feature 4403290..4403730 /gene="holC" /locus_tag="SF4230" /note="DNA polymerase III subunit chi; Validated; Region: PRK05728" /db_xref="CDD:235581" gene 4403733..4406588 /gene="valS" /locus_tag="SF4231" /db_xref="GeneID:1024980" CDS 4403733..4406588 /gene="valS" /locus_tag="SF4231" /note="Code: J; COG: COG0525" /codon_start=1 /transl_table=11 /product="valyl-tRNA synthetase" /protein_id="NP_709943.1" /db_xref="GeneID:1024980" /translation="MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNV TGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTR HDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRL YKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLV VATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCV KITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQK LERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKP AVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRN EEEVRKENNLGANVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSG FDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPL DMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALAST GRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFN QTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLV TVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTE WLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVL PADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEG FVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL" misc_feature 4403733..4406579 /gene="valS" /locus_tag="SF4231" /note="Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: ValS; COG0525" /db_xref="CDD:440291" gene complement(4406642..4407838) /gene="yjgN" /locus_tag="SF4232" /db_xref="GeneID:1025056" CDS complement(4406642..4407838) /gene="yjgN" /locus_tag="SF4232" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709944.2" /db_xref="GeneID:1025056" /translation="MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLP WALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLVGCV LTLLLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSLKGFWWVTFFLPILMAIGMGTV FFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFK VKLDTAYCIKYAILAFLALLPFLAVAGYIIFDQILNEYDSSGYANDDIENLQQFMEMQ RKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCAL VVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGVM PSLPFL" misc_feature complement(4406648..4407838) /gene="yjgN" /locus_tag="SF4232" /note="Uncharacterized membrane protein YjgN, DUF898 family [Function unknown]; Region: YjgN; COG4269" /db_xref="CDD:443410" gene 4408031..4408534 /locus_tag="SF4233" /db_xref="GeneID:1027494" CDS 4408031..4408534 /locus_tag="SF4233" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709945.1" /db_xref="GeneID:1027494" /translation="MNNIAPQSPVMRRLTLQDNPAIASVIRQVYAEYGLTADKGYTVA DPNLDELYQVYSQPGHAYWVVEYNGEVVGGGGIAPLTGSEADICELQKMYFLPAIRGK GLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCE VRMLREL" misc_feature 4408058..4408531 /locus_tag="SF4233" /note="N-acetylglutamate synthase or related acetyltransferase, GNAT family [Amino acid transport and metabolism]; Region: ArgA; COG1246" /db_xref="CDD:440859" gene complement(4408580..4408996) /gene="yjgD" /locus_tag="SF4234" /db_xref="GeneID:1026832" CDS complement(4408580..4408996) /gene="yjgD" /locus_tag="SF4234" /note="Code: S; COG: COG3076" /codon_start=1 /transl_table=11 /product="RNase E inhibitor protein" /protein_id="NP_709946.1" /db_xref="GeneID:1026832" /translation="MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLE TLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAE KFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH" misc_feature complement(4408583..4408996) /gene="yjgD" /locus_tag="SF4234" /note="ribonuclease E inhibitor RraB; Region: PRK11191" /db_xref="CDD:236876" gene 4409158..4410171 /gene="argI" /locus_tag="SF4235" /db_xref="GeneID:1027785" CDS 4409158..4410171 /gene="argI" /locus_tag="SF4235" /note="Code: E; COG: COG0078" /codon_start=1 /transl_table=11 /product="ornithine carbamoyltransferase subunit I" /protein_id="NP_709947.1" /db_xref="GeneID:1027785" /translation="MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLT GKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYD GIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLV YAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTED VAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLP AFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK LNN" misc_feature 4409158..4410159 /gene="argI" /locus_tag="SF4235" /note="ornithine carbamoyltransferase subunit I; Provisional; Region: PRK03515" /db_xref="CDD:179587" mobile_element 4410188..4410955 /mobile_element_type="insertion sequence:IS1" gene 4410243..4410518 /gene="insA" /locus_tag="SF4236" /db_xref="GeneID:1027364" CDS 4410243..4410518 /gene="insA" /locus_tag="SF4236" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709948.1" /db_xref="GeneID:1027364" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 4410264..>4410515 /gene="insA" /locus_tag="SF4236" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4410545..4410940 /gene="insB" /locus_tag="SF4237" /db_xref="GeneID:1025496" CDS 4410545..4410940 /gene="insB" /locus_tag="SF4237" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709949.1" /db_xref="GeneID:1025496" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKAIGHYLNIKHYQ" misc_feature 4410548..4410937 /gene="insB" /locus_tag="SF4237" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4410958..4411715) /gene="yjgL" /locus_tag="SF4238" /pseudo /db_xref="GeneID:1027047" misc_feature complement(4410958..4411715) /gene="yjgL" /locus_tag="SF4238" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790702 (617 aa). BLAST with identity of 90% in 252 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene complement(4411802..4412254) /gene="yjgK" /locus_tag="SF4239" /db_xref="GeneID:1023545" CDS complement(4411802..4412254) /gene="yjgK" /locus_tag="SF4239" /note="Code: S; COG: COG2731" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709950.2" /db_xref="GeneID:1023545" /translation="MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRL FYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGAPDTDWLADKDIAF LPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA" misc_feature complement(4411838..4412254) /gene="yjgK" /locus_tag="SF4239" /note="YhcH/YjgK/YiaL family protein; Region: TIGR00022" /db_xref="CDD:129133" gene complement(4412399..4412992) /gene="yjgJ" /locus_tag="SF4240" /db_xref="GeneID:1027783" CDS complement(4412399..4412992) /gene="yjgJ" /locus_tag="SF4240" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709951.3" /db_xref="GeneID:1027783" /translation="MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVSEVTD YLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAAR RYSQNGGCAGCMVLEGIHSHDPQARDIAIQYYHAAETTIYDYIARRHPQSAQCVTDFM STVMSGLSAKAREGHSIEQLCATAALAGEAIKTLLKE" misc_feature complement(4412549..4412959) /gene="yjgJ" /locus_tag="SF4240" /note="DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:440920" gene 4413063..4413776 /gene="yjgI" /locus_tag="SF4241" /db_xref="GeneID:1025272" CDS 4413063..4413776 /gene="yjgI" /locus_tag="SF4241" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_709952.1" /db_xref="GeneID:1025272" /translation="MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAA ERLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRL FKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGL ARDFGPRGITINVVQPGPIDTDVNPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAG PEASFVTGAMHTIDGAFGA" misc_feature 4413063..4413773 /gene="yjgI" /locus_tag="SF4241" /note="SDR family oxidoreductase; Region: PRK12742" /db_xref="CDD:183714" gene 4413908..4414303 /gene="yjgH" /locus_tag="SF4242" /db_xref="GeneID:1026741" CDS 4413908..4414303 /gene="yjgH" /locus_tag="SF4242" /note="Code: J; COG: COG0251" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709953.2" /db_xref="GeneID:1026741" /translation="MVERTAVFPAGRHSLYAEHRYSAAIRSGDLLFVSGQVGSREDGT PEPDFQQQVRLAFDNLHATLAAAGCTFDDIIDVTSFHTDPEKQSEDIMTVKNEIFSAP PYPNWTAVGVTWLAGFDFEIKVIARIPEL" misc_feature 4413962..4414291 /gene="yjgH" /locus_tag="SF4242" /note="YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgH_like; cd02198" /db_xref="CDD:100005" misc_feature order(4413968..4413973,4413980..4413982,4413986..4413988, 4413995..4413997,4414001..4414003,4414007..4414012, 4414124..4414126,4414130..4414135,4414139..4414141, 4414145..4414147,4414181..4414183,4414190..4414192, 4414202..4414204,4414217..4414243,4414268..4414270, 4414274..4414276,4414280..4414282) /gene="yjgH" /locus_tag="SF4242" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100005" misc_feature order(4413968..4413970,4414169..4414171,4414181..4414183, 4414226..4414228,4414268..4414270) /gene="yjgH" /locus_tag="SF4242" /note="putative active site [active]" /db_xref="CDD:100005" gene 4414584..4414718 /gene="pyrL" /locus_tag="SF4243" /db_xref="GeneID:1024385" CDS 4414584..4414718 /gene="pyrL" /locus_tag="SF4243" /codon_start=1 /transl_table=11 /product="pyrBI operon leader peptide" /protein_id="NP_709955.1" /db_xref="GeneID:1024385" /translation="MVQCVRHFVLPRLKKDAGLPFFFPLITHSQPLNRGAFFCLGVRR " misc_feature 4414584..4414715 /gene="pyrL" /locus_tag="SF4243" /note="pyr operon leader peptide; Region: PRK10224" /db_xref="CDD:236664" gene 4414722..4415657 /gene="pyrB" /locus_tag="SF4245" /db_xref="GeneID:1026558" CDS 4414722..4415657 /gene="pyrB" /locus_tag="SF4245" /note="Code: F; COG: COG0540" /codon_start=1 /transl_table=11 /product="aspartate carbamoyltransferase" /protein_id="NP_709956.1" /db_xref="GeneID:1026558" /translation="MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKV IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDA IVMRHPQEGAARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHVAM VGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEE VMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIAT DVDKTPHAWYFQQAGNGIFARQALLALVLNRDLVL" misc_feature 4414743..4415639 /gene="pyrB" /locus_tag="SF4245" /note="aspartate carbamoyltransferase; Region: asp_carb_tr; TIGR00670" /db_xref="CDD:273209" gene 4415670..4416131 /gene="pyrI" /locus_tag="SF4246" /db_xref="GeneID:1025418" CDS 4415670..4416131 /gene="pyrI" /locus_tag="SF4246" /note="Code: F; COG: COG1781" /codon_start=1 /transl_table=11 /product="aspartate carbamoyltransferase" /protein_id="NP_709957.2" /db_xref="GeneID:1025418" /translation="MTHDNKLQVEAIKRGTVIDHIPAQIGFKLLSLFKLTETDQRITI GLNLPSGEMGRKDLIKIENTFLSEEQVDQLALYAPQATVNRIDNYEVVGKSRPSLPER IDNVLVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEKEFSHNVVLAN" misc_feature 4415679..4416128 /gene="pyrI" /locus_tag="SF4246" /note="aspartate carbamoyltransferase, regulatory subunit; Region: ATCase_reg; TIGR00240" /db_xref="CDD:272981" gene 4416165..4416590 /gene="yjgF" /locus_tag="SF4247" /db_xref="GeneID:1026589" CDS 4416165..4416590 /gene="yjgF" /locus_tag="SF4247" /note="Code: J; COG: COG0251" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709958.2" /db_xref="GeneID:1026589" /translation="MSQTFYRCNKGEIMSKTIATENAPAAIGPYVQGVDLGNMIITSG QIPVNPKTGEVPADVAAQARQSLDNVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNA TYEAFFTEHNATFPARSCVEVARLPKDVKIEIEAIAVRR" misc_feature 4416204..4416584 /gene="yjgF" /locus_tag="SF4247" /note="YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cl10015" /db_xref="CDD:447879" misc_feature order(4416252..4416257,4416264..4416266,4416270..4416272, 4416279..4416281,4416285..4416287,4416291..4416296, 4416411..4416413,4416417..4416422,4416426..4416428, 4416432..4416434,4416465..4416467,4416474..4416476, 4416510..4416533,4416561..4416563,4416567..4416569, 4416573..4416575) /gene="yjgF" /locus_tag="SF4247" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100004" misc_feature order(4416252..4416254,4416453..4416455,4416465..4416467, 4416516..4416518,4416561..4416563) /gene="yjgF" /locus_tag="SF4247" /note="putative active site [active]" /db_xref="CDD:100004" gene complement(4416796..4419492) /gene="mgtA" /locus_tag="SF4248" /db_xref="GeneID:1025038" CDS complement(4416796..4419492) /gene="mgtA" /locus_tag="SF4248" /note="Code: P; COG: COG0474" /codon_start=1 /transl_table=11 /product="magnesium-transporting ATPase MgtA" /protein_id="NP_709959.2" /db_xref="GeneID:1025038" /translation="MFKEIFTRFIRHLPSRLVHRDPLPGAQQTVNTAVPPSLSAHCLK MAVMPEEELWKTFDTHPEGLNQAEVESAREQHGDNKLPAQQPSPWWVHLWVCYRNPFN ILLTILGAISYATEDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVSNTATVL RVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLP VEKAATTRQPEHSNPLECDTLCFMGTTVVSGTAQAMVIATGANTWFGQLAGRVSEQES EPNAFQQGISRVSMLLIRFMLVMAPMVLLINGYTKGDWWEAALFALSVAVGLTPEMLP MIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIVLENHTDIS GKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGTDEESARSLASRWQKIDEIPFDFERR RMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDTMLRKIKRVTDTLNRQ GLRVVAVATKYLPAREGDYQRADESDLILEGYIAFLDPPKETTAPALKALKASGITVK ILTGDSELVAAKVCHEVGLDAGEVVIGSDIETLSDDELANLAQRTTLFARLTPMHKER IVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSLMVLE EGVIEGRRTFANMLKYIKLTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLLYDVS QVAIPFDNVDDEQIQKPQRWNPADLGRFMVFFGPISSIFDILTFCLMWWVFHANTPET QTLFQSGWFVVGLLSQTLIVHMIRTRRVPFIQSCASWPLMIMTVIVMIVGIALPFSPL ASYLQLQALPLSYFPWLVAILAGYMTLTQLVKGFYSRRYGWQ" misc_feature complement(4416799..4419492) /gene="mgtA" /locus_tag="SF4248" /note="magnesium-transporting P-type ATPase MgtA; Region: PRK10517" /db_xref="CDD:236705" misc_feature complement(order(4417561..4417563,4417570..4417572, 4417627..4417629,4417636..4417638,4417645..4417647, 4417780..4417788,4417954..4417956,4418083..4418091, 4418158..4418160,4418368..4418376)) /gene="mgtA" /locus_tag="SF4248" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319772" misc_feature complement(order(4417279..4417284,4417291..4417293, 4417366..4417371,4417375..4417380,4417390..4417392)) /gene="mgtA" /locus_tag="SF4248" /note="putative cation binding site [ion binding]; other site" /db_xref="CDD:319772" gene 4419871..4420818 /gene="treR" /locus_tag="SF4249" /db_xref="GeneID:1023352" CDS 4419871..4420818 /gene="treR" /locus_tag="SF4249" /note="Code: K; COG: COG1609" /codon_start=1 /transl_table=11 /product="trehalose repressor" /protein_id="NP_709960.1" /db_xref="GeneID:1023352" /translation="MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSQRTRERVEAVMN QHGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMENQF SPQLVAEHLGVLKRRNIDGVVLFGFTGITEEMLAHWQSSLVLLARDAKGFASVCYDDE GAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAFCKAHKLHPVAALPGLAM KQGYENVAKVITPETTALLCATDTLALGASKYLQEQRIDTLQLASVGNTPLMKFLHPE IVTVDPGYAEAGRQAACQLIAQVTGRSEPQQIIIPATLS" misc_feature 4419880..4420812 /gene="treR" /locus_tag="SF4249" /note="trehalose operon repressor, proteobacterial; Region: trehalos_R_Ecol; TIGR02405" /db_xref="CDD:131458" gene 4420940..4422358 /gene="treB" /locus_tag="SF4250" /db_xref="GeneID:1025244" CDS 4420940..4422358 /gene="treB" /locus_tag="SF4250" /note="Code: G; COG: COG1263" /codon_start=1 /transl_table=11 /product="PTS system trehalose(maltose)-specific transporter subunits IIBC" /protein_id="NP_709961.2" /db_xref="GeneID:1025244" /translation="MSKINQTDIDRLIELVGGRGNIATVSHCITRLRFVLNQPANARP KEIEQLPMVKGCFTNAGQFQVVIGTNVGDYYQALIASTGQAQVDKEQVKKAARQNMKW HEQLISHFAEIFFPLLPALISGGLILGFRNVIGDLPMSNGQTLAQMYPSLQTIYDFLW LIGEAIFFYLPVGICWSAVKKMGGTPILGIVLGVTLVSPQLMNAYLLGQQLPEVWDFG MFSIAKVGYQAQVIPALLAGLALGVIETRLKRIVPDYLYLVVVPVCSLILAVFLAHAL IGPFGRMIGDGVAFAVRHLMTGSFAPIGAALFGFLYAPLVITGVHQTTLAIDLQMIQS MGGTPVWPLIALSNIAQGSAVIGIIISSRKHNEREISVPAAISAWLGVTEPAMYGINL KYRFPMLCAMIGSGLAGLLCGLNGVMANGIGVGGLPGILSIQPSYWQVFALAMAIAII IPIVLTSFIYQRKYRLGTLDIV" misc_feature 4420940..4422355 /gene="treB" /locus_tag="SF4250" /note="PTS system trehalose(maltose)-specific transporter subunits IIBC; Provisional; Region: PRK11007" /db_xref="CDD:182896" gene 4422408..4424063 /gene="treC" /locus_tag="SF4251" /db_xref="GeneID:1026208" CDS 4422408..4424063 /gene="treC" /locus_tag="SF4251" /note="Code: G; COG: COG0366" /codon_start=1 /transl_table=11 /product="trehalose-6-phosphate hydrolase" /protein_id="NP_709962.2" /db_xref="GeneID:1026208" /translation="MTNLPHWWQNGVIYQIYPKSFQDTTGSGTGDLRGVIQRLDYLHK LGVDAIWLTPFYVSPQVDNGYDVANYTAIDPTYGTLDDFDELVTQAKSRGIRIILDMV FNHTSTQHAWFREALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYY LHLFAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLISKDPRFPEDLDGD GRRFYTDGPRAHEFLHEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSELSMTFN FHHLKVDYPGGEKWTLAKPDFVALKTLFRHWQQGMHNVAWNALFWCNHDQPRIVSRFG DEGEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAELR NDGRDADELLAILASKSRDNSRTPMQWSNGDNAGFTAGEPWIGLGDNYQQINVEAALA DDSSVFYTYQKLIALRKQEAILTWGNYQDLLPNSPVLWCYRREWKGQTLLVIANLSRE IQPWQPGQMRGNWQLVMHNYEEASPQPCAMNLRPFEAVWWLQK" misc_feature 4422408..4424060 /gene="treC" /locus_tag="SF4251" /note="trehalose-6-phosphate hydrolase; Provisional; Region: PRK10933" /db_xref="CDD:182849" gene 4424457..4426595 /gene="nrdD" /locus_tag="SF4252" /db_xref="GeneID:1025227" CDS 4424457..4426595 /gene="nrdD" /locus_tag="SF4252" /note="Code: F; COG: COG1328" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleoside triphosphate reductase" /protein_id="NP_709963.1" /db_xref="GeneID:1025227" /translation="MTPHVMKRDGCKVPFKSERIKEAILRAAKAAEVDDADYCATVAA VVNEQMQGRNQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIEREKRGRLNQEI RGLVEQTNASLLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIH YHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASH IYGGTTINRIDEVLAPFVTASYNKHRKTAEEWNIPDAEGYANSRTIKECYDAFQSLEY EVNTLHTANGQTPFVTFGFGLGTSWESRLIQESILRNRIAGLGKNRKTAVFPKLVFAI RDGLNHKKGDPNYDIKQLALECASKRMYPDILNYDQVVNVTGSFKTPMGCRSFLGVWE NENGEQIHDGRNNLGVISLNLPRIALEAKGDEATFWKLLDERLVLARKALMTRIARLE GVKARVAPILYMEGACGVRLNADDDVSEIFKNGRASISLGYIGIHETINALFSGEHVY DNEKLRAKGIAIVERLRQAVDQWKEETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPG VTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLANGGFICYGEYPNIQHNLKALEDV WDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDASRVSVTRRVCGY LGSPDARPFNAGKQEEVKRRVKHLGNGQIG" misc_feature 4424457..4426589 /gene="nrdD" /locus_tag="SF4252" /note="anaerobic ribonucleoside triphosphate reductase; Provisional; Region: PRK09263" /db_xref="CDD:236436" misc_feature order(4424934..4424936,4424940..4424945,4425039..4425053, 4425063..4425065,4425072..4425077,4425084..4425086, 4425180..4425182,4426092..4426103,4426110..4426112) /gene="nrdD" /locus_tag="SF4252" /note="effector binding site [active]" /db_xref="CDD:153084" misc_feature order(4424979..4424981,4425120..4425122,4425324..4425326, 4425603..4425608,4425675..4425677,4426086..4426088, 4426095..4426097) /gene="nrdD" /locus_tag="SF4252" /note="active site" /db_xref="CDD:153084" misc_feature order(4426386..4426388,4426395..4426397,4426440..4426442, 4426449..4426451) /gene="nrdD" /locus_tag="SF4252" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:153084" misc_feature 4426488..4426502 /gene="nrdD" /locus_tag="SF4252" /note="glycine loop [active]" /db_xref="CDD:153084" gene 4426753..4427217 /gene="nrdG" /locus_tag="SF4253" /db_xref="GeneID:1025353" CDS 4426753..4427217 /gene="nrdG" /locus_tag="SF4253" /note="Code: O; COG: COG0602" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleotide reductase-activating protein" /protein_id="NP_709964.1" /db_xref="GeneID:1025353" /translation="MNYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRVNSG QPFTKAMEDKIIKDLNDTRIKRQGISLSGGDPLHPQNVPDILKLVKRIRAECPGKDIW VWTGYKLDELNAAQMQVVDLINVLVDGKFVQDLKDPSLIWRGSSNQVVHHLR" misc_feature 4426753..4427214 /gene="nrdG" /locus_tag="SF4253" /note="anaerobic ribonucleoside-triphosphate reductase-activating protein; Region: nrdG; PRK11121" /db_xref="CDD:236853" misc_feature order(4426828..4426830,4426834..4426836,4426840..4426842, 4426846..4426854,4426966..4426968,4426972..4426977, 4427059..4427067,4427128..4427130) /gene="nrdG" /locus_tag="SF4253" /note="FeS/SAM binding site [active]" /db_xref="CDD:100105" gene complement(4427300..4427644) /gene="cybC" /locus_tag="SF4254" /db_xref="GeneID:1025376" CDS complement(4427300..4427644) /gene="cybC" /locus_tag="SF4254" /codon_start=1 /transl_table=11 /product="soluble cytochrome B562" /protein_id="NP_709965.1" /db_xref="GeneID:1025376" /translation="MRKSLLAILAVSSLVFSSASFAADLEDNMETLNDNLKVIEKADN AAQVKDALTKMRAAALDAQKATPPKLEDKSPDSPEMKDFRHGFDILVGQIDDALKLAN EGKKKRRLLQSN" misc_feature complement(4427324..4427644) /gene="cybC" /locus_tag="SF4254" /note="Cytochrome b562; Region: Cytochrom_B562; cl01546" /db_xref="CDD:445465" gene complement(4427827..4429179) /gene="pmbA" /locus_tag="SF4255" /db_xref="GeneID:1027052" CDS complement(4427827..4429179) /gene="pmbA" /locus_tag="SF4255" /note="Code: R; COG: COG0312" /codon_start=1 /transl_table=11 /product="peptidase PmbA" /protein_id="NP_709966.1" /db_xref="GeneID:1027052" /translation="MALAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTT GISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARY TSPDPCAGVADKELLAFDAPNLDLFHPAEVSPDEAIELAARAEQAALQADKRITNTEG GSFNSHYGVKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMSDLQT PEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGSVYRKSTFL LDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSA RKLGLKSTGHAGGIHNWRIAGQGLSFEQMLKEMGTGLVVTELMGQGVSAITGDYSRGA AGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIETRSNIQCGSVLLPEMKIAGQ " misc_feature complement(4427830..4429167) /gene="pmbA" /locus_tag="SF4255" /note="peptidase PmbA; Provisional; Region: PRK11040" /db_xref="CDD:182922" gene 4429273..4429824 /gene="yjgA" /locus_tag="SF4256" /db_xref="GeneID:1025258" CDS 4429273..4429824 /gene="yjgA" /locus_tag="SF4256" /note="Code: S; COG: COG3028" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709967.1" /db_xref="GeneID:1025258" /translation="MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGA EIVDLGKNALYKIPLDADLRPAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALD KLKNRHNQQVVLFHKLENLRDRLIDQGDDAIAEVLNLWPDADRQQLRTLIRNAKKEKE GNKPPKSARQIFQYLRELAENEG" misc_feature 4429303..4429812 /gene="yjgA" /locus_tag="SF4256" /note="ribosome-associated protein; Region: PRK05255" /db_xref="CDD:235377" gene complement(4429907..4431280) /gene="yjfG" /locus_tag="SF4257" /db_xref="GeneID:1025722" CDS complement(4429907..4431280) /gene="yjfG" /locus_tag="SF4257" /note="Code: M; COG: COG0773" /codon_start=1 /transl_table=11 /product="ligase" /protein_id="NP_709968.1" /db_xref="GeneID:1025722" /translation="MRIHILGICGTFMGGLAMLARQLGHEVTGSDANVYPPMSTLLEK QGIELIQGYDASQLEPQPDLVIIGNAMTRGNPCVEAVLEKNIPYMSGPQWLHDFVLRD RWVLAVAGTHGKTTTAGMATWILEQCGYKPGFVIGGVPGNFEVSARLGESDFFVIEAD EYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRII WPENDINLKQTMAMGCWSEQELVGEQGHWQAKKLTTDASEWEVLLDGEKVGEVKWSLV GEHNMHNGLMAIAAARHVGVAPADAANALGSFINARRRLELRGEANGVTVYDDFAHHP TAILATLAALRGKVGGTARIIAVLEPRSNTMKMGICKDDLAPSLGRADEVFLLQPAHI PWQVAEVAEACVQPAHWSGDVDTLADMVVKTAQPGDHILVMSNGGFGGIHQKLLDGLA KKAEAAQ" misc_feature complement(4429931..4431277) /gene="yjfG" /locus_tag="SF4257" /note="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Region: mpl; TIGR01081" /db_xref="CDD:130153" gene 4431456..4432454 /gene="fbp" /locus_tag="SF4258" /db_xref="GeneID:1025839" CDS 4431456..4432454 /gene="fbp" /locus_tag="SF4258" /note="Code: G; COG: COG0158" /codon_start=1 /transl_table=11 /product="fructose-1,6-bisphosphatase" /protein_id="NP_709969.2" /db_xref="GeneID:1025839" /translation="MKTLGEFIVEKQHEFSHATGELTALLSAIKLGAKIIHRDINKAG LVDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEH AKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVV YGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVK KYIKFCQEEDKSTNRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPDGKLRLLYEC NPMAFLAEQAGGKASDGKERILDIIPETLHQRRSFFVGNDHMVEDVERFIREFPDA" misc_feature 4431456..4432451 /gene="fbp" /locus_tag="SF4258" /note="Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]; Region: Fbp; COG0158" /db_xref="CDD:439928" mobile_element complement(4432480..4433906) /mobile_element_type="insertion sequence:IS4" gene complement(4432494..4433840) /locus_tag="SF4259" /db_xref="GeneID:1024222" CDS complement(4432494..4433840) /locus_tag="SF4259" /note="Code: L; COG: COG3385" /codon_start=1 /transl_table=11 /product="insertion sequence IS4 transposase InsG" /protein_id="NP_709970.1" /db_xref="GeneID:1024222" /translation="MFPDFFMHIGQALDLVSRYDSLRNPLTSLGDYLAPELISRCLAE SGTVTLRKRRLPLEMMVWCIVGMVLERKEPLHQIVNRLDIMLPGNRPFVAPSAVIQAR QRLGSEAVRRMFTKTAQLWHNATPHPHWCGLTLLAIDGVFWRTPDTPENDAAFPRQTH AGNPALYPQVKMVCQMELTSHLLTAAAFGTMKNSENELAEQLIGQTGDNTLTLMDKGY YSLGLLNGWSLAGEHRHWMIPLRKGAQYEELRKLGKGDHLVKLKTSPQARKKWPGLGN EVTARLLTVTRKGKVCHLLTSMTDAMRFPGGEMADLYSNRWEIELGYREIKQTMQLSR LTLRSKKPELVEQELWGVLLAYNLVRYQMIKMAEHLKGYWPNQLSFSESCGMVMRMLM TLQGASPGRIPELMSDLASMGQLVKLPTRRGRAFPRVVKERPWKYPTAPKKSQSVA" misc_feature complement(4432752..4433750) /locus_tag="SF4259" /note="IS4 family transposase; Region: transpos_IS4_1; NF033592" /db_xref="CDD:468101" gene complement(4433926..4434921) /locus_tag="SF4260" /pseudogene="unknown" /db_xref="GeneID:1027770" gene complement(4434908..4435933) /gene="ytfT" /locus_tag="SF4261" /db_xref="GeneID:1027499" CDS complement(4434908..4435933) /gene="ytfT" /locus_tag="SF4261" /note="Code: G; COG: COG1172" /codon_start=1 /transl_table=11 /product="transport system permease" /protein_id="NP_709972.2" /db_xref="GeneID:1027499" /translation="MMPQSLPDTTPPKRRFHWPTGMPQLAALLLVLLVDSLVAPHFWQ VVLQDGRLFGSPIDILNRAAPVALLAIGITLVIATGGIDLSVGAVMAIAGATTAAMTV AGFSLPIVLLSALGTGILAGLWNGILVAILKIQPFVATLILMVAGRGVAQLITAGQIV TFNSPDLSWFGSGSLLFLPTPVIIAVLTLLLFWLLTRKTALGMFIEVVGINIRAAKNA GVNTRIIVMLTYVLSGLCAAIAGIIVAADIRGADANNAGLWLELDAILAVVIGGGSLM GGRFNLLLSVVGALIIQGMNTGILLSGFPPEMNQVVKAVVVLCVLIVQSQRFISLIKG VRSHDKT" misc_feature complement(4435004..4435765) /gene="ytfT" /locus_tag="SF4261" /note="Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism]; Region: AraH; COG1172" /db_xref="CDD:440785" gene complement(4435944..4437446) /gene="ytfR" /locus_tag="SF4262" /db_xref="GeneID:1026250" CDS complement(4435944..4437446) /gene="ytfR" /locus_tag="SF4262" /note="Code: G; COG: COG1129" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_709973.1" /db_xref="GeneID:1026250" /translation="MTTDQHQEILRTEGLSKFFPGVKALDNVDFSLRRGEIMALLGEN GAGKSTLIKALTGVYHADRGTIWLEGQTISPKNTAHAQQLGIGTVYQEVNLLPNMSVA DNLFIGREPKRFGLLRRKEMEKRATELMASYGFSLDVREPLNRFSVAMQQIVAICRAI DLSAKVLILDEPTASLDTQEMELLFGLMRQLRDRGVSLIFVTHFLDQVYQVSDRITVL RNGSFVGCRETRELPQIELVKMMLGRELDTHALQRAGRTLLSDKPVAAFKNYGKKGTI APFDLEVRPGEIVGLAGLLGSGRTETAEVIFGIKPADSGTALIKGKPQTLRSPHQASV LGIGFCPEDRKTDGIIAAASVRENIILALQAQRGWLRPISRKEQQEIAERFIRQLGIR TPSTEQPIEFLSGGNQQKVLLSRWLLTRPQFLILDELTRGIDVGAHAEIIRLIETLCA DGLALLVISSELEELVGYADRVIIMRDRKQVAEIPLAQLSVPAIMNAIAA" misc_feature complement(4435947..4437422) /gene="ytfR" /locus_tag="SF4262" /note="ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]; Region: MglA; COG1129" /db_xref="CDD:440745" gene complement(4437586..4438542) /locus_tag="SF4263" /pseudogene="unknown" /db_xref="GeneID:1027603" gene 4438852..4439382 /gene="ppa" /locus_tag="SF4264" /db_xref="GeneID:1025481" CDS 4438852..4439382 /gene="ppa" /locus_tag="SF4264" /note="Code: C; COG: COG0221" /codon_start=1 /transl_table=11 /product="inorganic pyrophosphatase" /protein_id="NP_709975.2" /db_xref="GeneID:1025481" /translation="MSLLNVPAGKDLPEDIYVVIEIPANADPIKYEIDKESGALFVDR FMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGSVIRCRPVAVLKMTDEAGE DAKLVAVPHSKLSKEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVEGWENAE AAKAEIVASFERAKNK" misc_feature 4438852..4439379 /gene="ppa" /locus_tag="SF4264" /note="inorganic diphosphatase; Region: PRK01250" /db_xref="CDD:179262" misc_feature order(4438921..4438926,4439083..4439088) /gene="ppa" /locus_tag="SF4264" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238239" misc_feature order(4438939..4438941,4438981..4438983,4439017..4439019, 4439275..4439280) /gene="ppa" /locus_tag="SF4264" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238239" misc_feature order(4438945..4438947,4439047..4439049,4439062..4439064, 4439143..4439145,4439158..4439160) /gene="ppa" /locus_tag="SF4264" /note="metal binding sites [ion binding]; metal-binding site" /db_xref="CDD:238239" gene complement(4439762..4440103) /gene="ytfP" /locus_tag="SF4265" /db_xref="GeneID:1024300" CDS complement(4439762..4440103) /gene="ytfP" /locus_tag="SF4265" /note="Code: S; COG: COG2105" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709976.1" /db_xref="GeneID:1024300" /translation="MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSLGHYPGA VPGNGTVHGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLKL IESGDWLDRDK" misc_feature complement(4439774..4440103) /gene="ytfP" /locus_tag="SF4265" /note="Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family [Amino acid transport and metabolism]; Region: YtfP; COG2105" /db_xref="CDD:441708" gene complement(4440106..4443885) /gene="ytfN" /locus_tag="SF4266" /db_xref="GeneID:1027766" CDS complement(4440106..4443885) /gene="ytfN" /locus_tag="SF4266" /note="Code: S; COG: COG2911" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709977.1" /db_xref="GeneID:1027766" /translation="MSLWKKISLGVVIVILLLLGSVAFLVGTTSGLHLVFKAADRWVP GLDIGKVTGGWRDLTLSDVRYEQLGVAVKAGNLHLGVGLECLWNSSVCINDLALKDIQ VNIDSKKMPPSEQVEEEEDSGPLDLSTPYPITLTRVALDNVNIKIDDTTVSVMDFTSG LNWQEKTLTLKPTSLKGLLIALPKVVEVAQEEVVEPKIENPQPEEKPLGETLKDLFSR PVLPEMTDVHLPLNLNIEEFKGEQLRVTGDTDITVRTMLLKVSSIDGNTKLDALDIDS NQGIVNASGTAQLSDNWPVDITLNSTLNVEPLKGEKVKLKVGGALREQLEIGVNLSGP VDMDLRAQTRLAEAGLPLNVEVNSKQLYWPFTGEKQYQADDLKLKLTGKMTDYTLSMR TAVKGQEIPPATITLDAKGNEQQVNLDKLTVAALEGKTELKALLDWQQAISWRGELTL NGINTAKEFPEWPSKLNGLIKTRGSLYGGTWQMEVPELKLTGNVKQNKVNVDGTLKGN SYMQWMIPGLHLELGPNSAEVKGELGVKDLNLDATINAPGLDNALPGLGGTAKGLVKV RGTVEAPQLLADITARGLRWQELSVAQVRVEGDIKSTDQIAGKLDVRVEQISQPDVNI NLVTLNAKGSEKQHELQLRIQGEPVSGQLNLAGSFDRKEERWKGTLSNTRFQTPVGPW SLTRDIALDYRNKEQKISIGPHCWLNPNAELCVPQTIDAGAEGRAVVNLNRFDLAMLK PFMPETTQASGIFTGKADVAWDTTKEGLPQGSITLSGRNVQVTQTVNDAALPVAFQTL NLTAELRNNRAELGWTIRLTNNGQFDGQVQVTDPQGRRNLGGNVNIRNFNLAMINPIF TRGEKAAGMVSANLRLGGDVQSPQLFGQLQVTGVDIDGNFMPFDMQPSQLAVNFNGMR STLAGTVRTQQGEIYLNGDADWSQIENWRARVTAKGSKVRITVPPMVRMDVSPDVVFE ATPNLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNDNLQPEEPKTASIPINSNL IVHVGNNVRIDAFGLKARLTGDLNVVQDKQGLGLNGQINIPEGRFHAYGQDLIVRKGE LLFSGPPDQPYLNIEAIRNPDATEDDVIAGVRVTGLADEPKAEIFSDPAMSQQAALSY LLRGQGLESDQSDSAAMTSMLIGLGVAQSGQIVGKIGETFGVSNLALDTLGVGDSSQV VVSGYVLPGLQVKYGVGIFDSIATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF" misc_feature complement(<4442137..4443717) /gene="ytfN" /locus_tag="SF4266" /note="Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport]; Region: TamB; COG2911" /db_xref="CDD:442155" misc_feature complement(4440109..4442580) /gene="ytfN" /locus_tag="SF4266" /note="Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport]; Region: TamB; COG2911" /db_xref="CDD:442155" gene complement(4443882..4445615) /gene="ytfM" /locus_tag="SF4267" /db_xref="GeneID:1023343" CDS complement(4443882..4445615) /gene="ytfM" /locus_tag="SF4267" /note="Code: M; COG: COG0729" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709978.1" /db_xref="GeneID:1023343" /translation="MRYIRQLCCVSLLCLSGSAVAANVRLQVEGLSGQLEKNVRAQLS TIESDEVTPDRRFRARVDDAIREGLKALGYYQPTIEFDLRPPPKKGRQVLIAKVTPGV PVLIGGTDVVLRGGARTDKDYLKLLDTRPAIGTVLNQGDYENFKKSLTSIALRKGYFD SEFTKAQLGIALGLHKAFWDIDYNSGERYRFGHVTFEGSQIRDEYLQNLVPFKEGDEY ESKDLAELNRRLSATGWFNSVVVAPQFDKARETKVLPLTGVVSPRTENTIETGVGYST DVGPRVKATWKKPWMNSYGHSLTTSTSISAPEQTLDFSYKMPLLKNPLEQYYLVQGGF KRTDLNDTESDSTTLVASRYWDLSSGWQRAINLRWSLDHFTQGEITNTTMLFYPGVMI SRTRSRGGLMPTWGDSQRYSIDYSNTAWGSDVDFSVFQAQHVWIRTLYDRHRFVTRGT LGWIETGDFDKVPPDLRFFVGGDRSIRGYKYKSIAPKYANGDLKGASKLITGSLEYQY NVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWESPVGPIKLDFAVPVADKDEHG LQFYIGLGPEL" misc_feature complement(4443885..4445597) /gene="ytfM" /locus_tag="SF4267" /note="Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; Region: TamA; COG0729" /db_xref="CDD:440493" gene 4445821..4446459 /gene="msrA" /locus_tag="SF4268" /db_xref="GeneID:1026808" CDS 4445821..4446459 /gene="msrA" /locus_tag="SF4268" /note="Code: O; COG: COG0225" /codon_start=1 /transl_table=11 /product="methionine sulfoxide reductase A" /protein_id="NP_709979.2" /db_xref="GeneID:1026808" /translation="MSLFDKKHLVSPADALPGRNTPMPVATLHAVNGHSMTNVPDGME IAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAA MLAADDDRHITTEIANATPFYYAEDDHQQYLHKNPYGYCGIGGIGVCLPPEA" misc_feature 4445938..4446405 /gene="msrA" /locus_tag="SF4268" /note="Peptide methionine sulfoxide reductase MsrA [Posttranslational modification, protein turnover, chaperones]; Region: MsrA; COG0225" /db_xref="CDD:439995" gene 4446782..4448125 /gene="ytfL" /locus_tag="SF4269" /db_xref="GeneID:1023522" CDS 4446782..4448125 /gene="ytfL" /locus_tag="SF4269" /note="Code: R; COG: COG1253" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_709980.1" /db_xref="GeneID:1023522" /translation="MLNSILVILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINA QRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSLFSRYMSAELSEQLSF ILSFSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANM IFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTP RENVIWFDLHEDEQSLKNKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSLA LNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMG DLVGQGLEEQIVARDENSWLIDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRK IPKRTDSVKFAGYKFEVVDIDNYRIDQLLVTRIDSKATALSPKLPDAKDKEESVA" misc_feature 4446782..4448074 /gene="ytfL" /locus_tag="SF4269" /note="Hemolysin-related protein, contains CBS domains, UPF0053 family [General function prediction only]; Region: TlyC; COG1253" /db_xref="CDD:440865" gene complement(4448187..4448459) /locus_tag="SF4269a" /db_xref="GeneID:16608372" CDS complement(4448187..4448459) /locus_tag="SF4269a" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="YP_008439296.1" /db_xref="GeneID:16608372" /translation="MRLIIVGPIVAPHRRNTQQEITMKIFQRYNPLQVAKYVKILFRG RLYIKDIGAFEFDKGKILIPKVKDKLHLSVMSEVNRQVMRLQTEMA" misc_feature complement(4448205..4448393) /locus_tag="SF4269a" /note="Protein of unknown function (DUF1107); Region: DUF1107; pfam06526" /db_xref="CDD:428988" gene 4448718..4449272 /gene="ytfJ" /locus_tag="SF4270" /db_xref="GeneID:1023597" CDS 4448718..4449272 /gene="ytfJ" /locus_tag="SF4270" /note="Code: R; COG: COG3054" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709981.1" /db_xref="GeneID:1023597" /translation="MTLRKILALTCLLLPMMASAHQFEIGQRVPPIGITDRGELVLDK DQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNT DDAIPGSGMFVRSSLESNKKLYPWSQFIVDSNGVARGAWQLDEESSAVVVLDKDGRVQ WAKDGALTPEEVQQVMDLLQKLLK" misc_feature 4448718..4449269 /gene="ytfJ" /locus_tag="SF4270" /note="Predicted transcriptional regulator YtfJ [General function prediction only]; Region: YtfJ; COG3054" /db_xref="CDD:442288" gene complement(4449335..4450273) /gene="ytfI" /locus_tag="SF4271" /db_xref="GeneID:1027764" CDS complement(4449335..4450273) /gene="ytfI" /locus_tag="SF4271" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709982.1" /db_xref="GeneID:1027764" /translation="MLPRIRHNNFIGAVELFVKSSHTKTHSNDFFNNIQHAFKKKDWV SNYDSLLTLRESFRCATQIDKNSYQVLSSKNETVNAMDNFLISFSLKDNGAEYTITLR GSGFEYEEIPITINEYNSFMDFKNREFPLEQNRRLYACDILQKKQSDIPKRIKGYIRQ AFGDVSFGYALLEDVVSKLKRGKFELQIPGGGIKECDGWYIYEKIIDDNFAIVIESLG FALKIYGGDERFRNGSSVVLEDEDYSLIYNFLVNAGCQQVELAEQVDAIVSANLAADS NITKEKICEKYKSTIEAFKKEQLALPVLVRCKNSET" gene complement(4450485..4451225) /gene="cysQ" /locus_tag="SF4272" /db_xref="GeneID:1026559" CDS complement(4450485..4451225) /gene="cysQ" /locus_tag="SF4272" /note="Code: P; COG: COG1218" /codon_start=1 /transl_table=11 /product="3'(2'),5'-bisphosphate nucleotidase CysQ" /protein_id="NP_709983.1" /db_xref="GeneID:1026559" /translation="MLDQVCQLARNAGDAIMQVYDGTKPMDVVSKADNSPVTAADIAA HTVIMDGLRTLAPDIPVLSEEDPPGWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNI ALIDHGKPILGVVYAPVMNVMYSAAEGKAWKEECGVRKLIQVRDARPPLVVISRSHAD AELKEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTNIWDTAAGHAVAAAAGA HVHDWQGKPLDYTPRESFLNPGFRVSIY" misc_feature complement(4450488..4451225) /gene="cysQ" /locus_tag="SF4272" /note="adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional; Region: PRK10931" /db_xref="CDD:182848" misc_feature complement(order(4450611..4450616,4450641..4450643, 4450677..4450679,4450752..4450754,4450761..4450763, 4450956..4450958,4450962..4450979,4451031..4451036, 4451103..4451105)) /gene="cysQ" /locus_tag="SF4272" /note="active site" /db_xref="CDD:238816" gene 4451415..4453358 /gene="cpdB" /locus_tag="SF4273" /db_xref="GeneID:1027684" CDS 4451415..4453358 /gene="cpdB" /locus_tag="SF4273" /note="Code: F; COG: COG0737" /codon_start=1 /transl_table=11 /product="bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase" /protein_id="NP_709984.2" /db_xref="GeneID:1027684" /translation="MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKD TATEKFGLVRTASLINDARNEVKNSVLVDNGDLIQGSPLADYMSAKGLKAGDVHPVYK ALNTLDYTVGTLGNHEFNYGLDYLKNALAGAKFPYVNANVIDARTKQPMFTPYLIKDT EVVDKDGKKQTLKIGYIGVVPPQIMGWDKANLSGKVTVNDITETVRKYVPEMREKGAD VIVVLAHSGLSADPYKVMAENSVYYLSEIPGVNAIMFGHAHAVFPGKDFADIEGADIT KGTLNGVPAVMPGMWGDHLGVVDLQLSNDSGKWQVTQAKAEARPIYDIANKKSLAAED SKLVETLKADHDATRQFVSKPIGKSADNMYSYLALVQDDPTVQVVNNAQKAYVEHYIQ GDPDLAKLPVLSAAAPFKVGGRKNDPASYVEVEKGQLTFRNAADLYLYPNTLIVVKAS GKEVKEWLECSAGQFNQIAPNSTKPQSLINWDGFRTYNFDVIDGVNYQIDVTQPARYD GECQMINANAERIKNLTFNGKPIDPNAMFLVATNNYRAYGGKFAGTGDSHIAFASPDE NRSVLAAWIADESKRAGEIHPAADNNWRLAPIAADKKLDIRFETSPSDKAAAFIKEKG QYPMNKVATDDIGFAIYQVDLSK" misc_feature 4451415..4453355 /gene="cpdB" /locus_tag="SF4273" /note="bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase; Region: cpdB; PRK09420" /db_xref="CDD:236506" gene complement(4453484..4453954) /gene="ytfH" /locus_tag="SF4275" /db_xref="GeneID:1027772" CDS complement(4453484..4453954) /gene="ytfH" /locus_tag="SF4275" /note="Code: K; COG: COG1733" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709985.2" /db_xref="GeneID:1027772" /translation="MGSLHRFVLCLNTLTPKLTFSKYVQKGKYEMSQVSLSQQLKEGN LFAEQCPSREVLKHVTSRWGVLILVALREGTHRFSDLRRKIGGVSEKMLAQSLQALEQ DGFLNRIAYPVVPPHVEYSLTPLGEQVSEKVAALADWIELNLPEVLAVRDERAA" misc_feature complement(4453514..4453834) /gene="ytfH" /locus_tag="SF4275" /note="DNA-binding transcriptional regulator, HxlR family [Transcription]; Region: HxlR; COG1733" /db_xref="CDD:441339" gene 4453953..4454813 /gene="ytfG" /locus_tag="SF4274" /db_xref="GeneID:1027779" CDS 4453953..4454813 /gene="ytfG" /locus_tag="SF4274" /note="Code: MG; COG: COG0702" /codon_start=1 /transl_table=11 /product="oxidoreductase" /protein_id="NP_709986.1" /db_xref="GeneID:1027779" /translation="MIAITGATGQLGHYIIESLMKTVPASQIVAIVRNPAKAQALAAQ GITVRQADYSDEAALTSALQGVEKLLLISSSEVGQRAPQHRNVINAAKAAGVKFIAYT SLLHADTSPLGLADEHIETEKMLADSGIVYTLLRNGWYSENYLASAPAALEHGVFIGA AGDGKIASATRADYATAAARVISEAGHEGKVYELAGDSAWTLTQLAAELTKQSGKQVT YQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDNSKTLSKLIGCPTTTLAE SVSHLFNVNN" misc_feature 4453956..4454774 /gene="ytfG" /locus_tag="SF4274" /note="triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs; Region: TMR_SDR_a; cd05269" /db_xref="CDD:187578" misc_feature order(4453968..4453970,4453974..4453985,4454049..4454054, 4454061..4454063,4454103..4454114,4454166..4454177, 4454364..4454372,4454463..4454465) /gene="ytfG" /locus_tag="SF4274" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187578" gene 4454922..4455887 /gene="ytfF" /locus_tag="SF4276" /db_xref="GeneID:1027776" CDS 4454922..4455887 /gene="ytfF" /locus_tag="SF4276" /note="Code: GER; COG: COG0697" /codon_start=1 /transl_table=11 /product="transmembrane subunit" /protein_id="NP_709987.2" /db_xref="GeneID:1027776" /translation="MISGVLYALLAGLMWGLIFVGPLIVPEYPAMLQSMGRYLALGLI ALPIAWLRRVRLRQLARRDWLTALMLTMMGNLIYYFCLASAIQRTGAPVSTMIIGTLP VVIPVFANLLYSQRDGKLAWGKLAPALICIGIGLASVNIAELNHGLPDFDWARYTSGI VLALVSVVCWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYLVACYWLNIQ TPDFSLPFGPRPLVFISLMVAIAVLCSWVGALCWNVASQRLPTVILGPLIVFETLAGL LYTFLLRQQMPPLMTLSGIALLVIGVVIAVRAKPEKPLTESVSES" misc_feature 4454922..4455860 /gene="ytfF" /locus_tag="SF4276" /note="Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:440461" gene 4455995..4456657 /gene="ytfE" /locus_tag="SF4277" /db_xref="GeneID:1027781" CDS 4455995..4456657 /gene="ytfE" /locus_tag="SF4277" /note="Code: D; COG: COG2846" /codon_start=1 /transl_table=11 /product="iron-sulfur cluster repair di-iron protein" /protein_id="NP_709988.1" /db_xref="GeneID:1027781" /translation="MAYRDQPLGELALSIPRASALFRKYDMDYCCGGKQTLARAAARK ELDVEVIEAELAKLAEQPIEKDWRSAPLAEIIDHIIVRYHDRHREQLPELILQATKVE RVHADKPSVPKGLTKYLTMLHEELSSHMMKEEQILFPMIKQGMGSQAMGPISVMESEH DEAGELLEVIKHTTNNVTPPPEACTTWKAMYNGINELIDDLMDHISLENNVLFPRALA GE" misc_feature 4455995..4456654 /gene="ytfE" /locus_tag="SF4277" /note="iron-sulfur cluster repair protein YtfE; Region: PRK10992" /db_xref="CDD:236812" gene complement(4456702..4458114) /gene="cycA" /locus_tag="SF4278" /db_xref="GeneID:1026580" CDS complement(4456702..4458114) /gene="cycA" /locus_tag="SF4278" /note="Code: E; COG: COG1113" /codon_start=1 /transl_table=11 /product="D-alanine/D-serine/glycine permease" /protein_id="NP_709989.1" /db_xref="GeneID:1026580" /translation="MVDQVKVVADDQAPAEQSLRRNLTNRHVQLIAIGGAIGTGLFMG SGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYF TGWTYWFCWVVTGMADVVAITAYAQFWFPDLSDWVASLAVIVLLLTLNLATVKMFGEM EFWFAMIKIVAIVSLIVVGLVMVAMHFQSPTGVEASFAHLWNDGGWFPKGLSGFFAGF QIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSV VPEKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA FAKLSKRAVPAKGLTFSCICLLGGVVMLYVNPSVIGAFTMITTVSAILFMFVWTIILC SYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFVFVVVLLTLEDDTRQALLVTPLWF IALGLGWLFIGKKRAAELRK" misc_feature complement(4456705..4458111) /gene="cycA" /locus_tag="SF4278" /note="D-alanine/D-serine/glycine permease; Provisional; Region: PRK11049" /db_xref="CDD:236830" gene complement(4458422..4459093) /locus_tag="SF4279" /db_xref="GeneID:1023443" CDS complement(4458422..4459093) /locus_tag="SF4279" /note="Code: O; COG: COG0545" /codon_start=1 /transl_table=11 /product="FKBP-type peptidylprolyl isomerase" /protein_id="NP_709990.3" /db_xref="GeneID:1023443" /translation="MWLICCPLLLYPKKGNTMTTPTFDTIEAQASYGIGLQVGQQLSE SGLEGLLPEALVAGIADALEGKHPAVPVDVVHRALREIHERADAVRRQRFQAMAAEGV KYLEENAKKEGVNSTESGLQFRVINQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVAR GEPAEFPVNGVIPGWIEALTLMPVGSKWELTIPQELAYGERGAGASIPPFSTLVFEVE LLEIL" misc_feature complement(4458425..4459042) /locus_tag="SF4279" /note="peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK11570" /db_xref="CDD:183207" gene 4459225..4459806 /gene="ytfB" /locus_tag="SF4280" /db_xref="GeneID:1023501" CDS 4459225..4459806 /gene="ytfB" /locus_tag="SF4280" /note="Code: M; COG: COG3061" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709991.1" /db_xref="GeneID:1023501" /translation="MIEEQDVEQEETMPGRFELKPTLEKVWHAPDNFRFMDPLPPMHR RGIIIAAIVLVVGFLLPSDDTPNASVVTREAQLDIQSQSQPPTEEQPQTTQTQPFQPD SGIDNQWRSYRVEPGKTMAQLFRDHGLPATDVYAMAQVEGAGKPLSNLQNGQMVKIRQ NASGVVTGLTIDTGNNQQVLFTRQPDGSFIRAR" misc_feature 4459324..>4459803 /gene="ytfB" /locus_tag="SF4280" /note="Cell division protein YtfB/OapA (opacity-associated protein A) [Cell cycle control, cell division, chromosome partitioning]; Region: OapA; COG3061" /db_xref="CDD:442295" gene complement(4459790..4460437) /gene="ytfA" /locus_tag="SF4281" /db_xref="GeneID:1027767" CDS complement(4459790..4460437) /gene="ytfA" /locus_tag="SF4281" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709992.3" /db_xref="GeneID:1027767" /translation="MYIDTSNVQSLKEKLLLCAVNEFAEYGYEGARVDNIVKAAGCSK QTVYHHFGNKENLFIEVLEYTWNDIRQKEKALDFSDLPPQKAIEKIIDFTWDYYIANP WFLKIVHSENQSKGVHYAKSQRLLEINHAHLQLMESLLDEGKKYNIFKPGIDPLQVNI NIAALGGYYLINQHTLGLVYHISMVSPQALEARRKVIKETILSWLLVDPSSTAHE" misc_feature complement(4460255..4460383) /gene="ytfA" /locus_tag="SF4281" /note="Bacterial regulatory proteins, tetR family; Region: TetR_N; pfam00440" /db_xref="CDD:425684" misc_feature complement(4459835..4460191) /gene="ytfA" /locus_tag="SF4281" /note="Tetracyclin repressor-like, C-terminal domain; Region: TetR_C_29; pfam17938" /db_xref="CDD:436158" gene 4460649..4461440 /gene="fabG" /locus_tag="SF4282" /db_xref="GeneID:1027777" CDS 4460649..4461440 /gene="fabG" /locus_tag="SF4282" /note="Code: QR; COG: COG1028" /codon_start=1 /transl_table=11 /product="3-ketoacyl-ACP reductase" /protein_id="NP_709993.2" /db_xref="GeneID:1027777" /translation="MKSTRPVAVITGATRGIGKGCAQELARGGFNLLINDRPDADSVE KLHITQQECLAEGVEVICFPADVGDLSLHEEMLDAAQNQWGRLDCLLNNAGISVKKRG DLLDLEPDSFDQNIAINTRAPFFLAQAFSKRLLAQPKPEAELPHRSIIFVSSINAIML AMNRGEYTIAKTAVSAAARLFAARLCNEQIGVYEVRPGLIKTDMTIPATAYYDELIAK GLVPWGRWGYPADIASTVRAMAEGKLIYTCGQAVAIDGGLSMPRF" misc_feature 4460661..4461437 /gene="fabG" /locus_tag="SF4282" /note="putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR), subgroup 1, classical (c) SDR; Region: BKR_1_SDR_c; cd05337" /db_xref="CDD:187596" misc_feature order(4460682..4460684,4460688..4460699,4460754..4460762, 4460841..4460849,4460925..4460933,4461000..4461002, 4461102..4461110,4461147..4461149,4461159..4461161, 4461237..4461248,4461252..4461257) /gene="fabG" /locus_tag="SF4282" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187596" misc_feature order(4461108..4461110,4461147..4461149,4461159..4461161) /gene="fabG" /locus_tag="SF4282" /note="active site" /db_xref="CDD:187596" gene 4461450..4462334 /locus_tag="SF4283" /db_xref="GeneID:1027625" CDS 4461450..4462334 /locus_tag="SF4283" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_709994.1" /db_xref="GeneID:1027625" /translation="MRDLLQRPDLFSINTATLGYKTPLPAIIDACAARGIGAIAPWRR ELQGEDLQQITRQLAASNMSVSGLCRSTYYTAPTLAERKLAIDDNRRALDDAAVLNAA CYMQVVGGLPTGTKDLYEAREQVKQGIRQLLPHSKDVGVPIALEPLHPMTAADRSCLC TLRQALDWCDELDPDGEFGLGVAVDVYHVWWDPDLASQILRAGKRILAFHVSDWLMPT TDLVNDRGMPGDGVINIPSIRRLVENAGFNGAIELEIFSPYWWQKDINSTGNDSNLLI VFYVQIMPDDLVMQLHRF" misc_feature 4461480..4462241 /locus_tag="SF4283" /note="Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism]; Region: YcjR; COG1082" /db_xref="CDD:440699" mobile_element complement(4462254..4463021) /mobile_element_type="insertion sequence:IS1" gene complement(4462269..4462772) /gene="insB" /locus_tag="SF4284" /db_xref="GeneID:1027062" CDS complement(4462269..4462772) /gene="insB" /locus_tag="SF4284" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709995.1" /db_xref="GeneID:1027062" /translation="MSRQCTHYGRWPQHGFTSLKKLRPQSVTSRIQPGSDVIVCAEMD EHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTLATLERLLSLLSAFEVVVWMTDG WPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLARLGRKSLSFSKSVELHDKVIGHY LNIKHYQ" misc_feature complement(4462272..4462664) /gene="insB" /locus_tag="SF4284" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 4462847..4463842 /locus_tag="SF4285" /db_xref="GeneID:1025239" CDS 4462847..4463842 /locus_tag="SF4285" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_709996.1" /db_xref="GeneID:1025239" /translation="MPCFTAMRAEIALMSGSAFAVTHHAFSSGAGRTSDGNGSHASTL KSPSYTKSVSWQHYPMCQVFGVSRSGYYDRVQHAPSDRKQSDERLKLEIKVAHIRTRE TYGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPVAPNLLN QTFAPTAPNQVWVADLTYVATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALF MALRSQRPPAGLIHHSDRGSQYCAYDYRVIQEQSGLKTSMSRKGNCYDNAPMESFWGT LKNESLSHYRFNNWDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature <4463012..4463815 /locus_tag="SF4285" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" mobile_element 4463022..4463885 /note="partial" /mobile_element_type="insertion sequence:IS600" gene complement(4463883..4464935) /locus_tag="SF4286" /db_xref="GeneID:1027415" CDS complement(4463883..4464935) /locus_tag="SF4286" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="lysine/cadaverine transporter" /protein_id="NP_709997.1" /db_xref="GeneID:1027415" /translation="MSSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGGIAIWGWI ISIIGAMSLAYVYARLATKNPQQGGPIAYAGEISPAFGFQTGVLYYHANWIGNLAIGI TAVSYLSTFFPVLNDPVPAGIACIAIVWVFTFVNMLGGTWVSRLTTIGLVLVLIPVVM TAIVGWHWFDAATYAANWNTADTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKR TVPLATMLGTGLAGIVYIAATQVLSGMYPSSVMAASGAPFAISASTILGNWAAPLVSA FTAFACLTSLGPWMMLVGQAGVRAANDGNFPKVYGEVDSNGIPKKGLLLAAVKMTALM ILITLMNSAGGKASDL" misc_feature complement(4463886..4464935) /locus_tag="SF4286" /note="cadaverine/lysine antiporter; Region: cadB; PRK10435" /db_xref="CDD:182458" mobile_element 4465055..4465822 /mobile_element_type="insertion sequence:IS1" gene 4465110..4465385 /gene="insA" /locus_tag="SF4287" /db_xref="GeneID:1026804" CDS 4465110..4465385 /gene="insA" /locus_tag="SF4287" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_709998.1" /db_xref="GeneID:1026804" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 4465131..>4465382 /gene="insA" /locus_tag="SF4287" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4465412..4465807 /gene="insB" /locus_tag="SF4288" /db_xref="GeneID:1026881" CDS 4465412..4465807 /gene="insB" /locus_tag="SF4288" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_709999.1" /db_xref="GeneID:1026881" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL AALERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 4465415..4465804 /gene="insB" /locus_tag="SF4288" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4466170..4466245) /locus_tag="SF4546" /db_xref="GeneID:3161826" tRNA complement(4466170..4466245) /locus_tag="SF4546" /product="tRNA-Phe" /codon_recognized="UUC" /db_xref="GeneID:3161826" gene complement(4466352..4466927) /gene="yjdC" /locus_tag="SF4289" /db_xref="GeneID:1026581" CDS complement(4466352..4466927) /gene="yjdC" /locus_tag="SF4289" /note="Code: K; COG: COG1309" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_710000.1" /db_xref="GeneID:1026581" /translation="MQREDVLGEALKLLELQGIANTTLEMVAERVDYPLDELRRFWPD KEAILYDALRYLSQQIDVWRRQLMLDETQTAEQKLLARYQALSECVKNNRYPGCLFIA ACTFYPDPGHPIHQLADQQKSAAYDFTHELLTTLEVDDPAMVAKQMELVLEGCLSRML VNRSQADVDTAHRLAEDILRFARCRQGGALT" misc_feature complement(4466355..4466927) /gene="yjdC" /locus_tag="SF4289" /note="putative transcriptional regulator; Provisional; Region: PRK11640" /db_xref="CDD:183252" gene complement(4466964..4468661) /gene="dipZ" /locus_tag="SF4290" /db_xref="GeneID:1025245" CDS complement(4466964..4468661) /gene="dipZ" /locus_tag="SF4290" /note="Code: OC; COG: COG0526" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein" /protein_id="NP_710001.1" /db_xref="GeneID:1025245" /translation="MAQRIFTLILLLCSTSVFAGLFDAPGRSQFVPADQAFAFDFQQN QHDLNLTWQIKDGYYLYRKQIRITPEHAKIADEQLPQGVWHEDEFYGKSEIYRDRLTL PVTINQASAGATLTVTYQGCADAGFCYPPETKTVPLSEVVANNAASQPVSVSQQEQHT AQLPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGKQRLSTARALLLTFIYVQGMA LTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLAMSMFGLFTLQLPSSLQTRLT LMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYLYAL GMGLPLMLITVFGNRLLPKSGPWMEQVKTAFGFVILALPVFLLERVIGDVWGLRLWSA LGVAFFGWAFITSLQAKRGWMRVVQIILLAAALVSVRPLQDWAFGATHTAQTQTHLNF TQIKTVDELNQALVEAKGKPVMLDLYADWCVACKEFEKYTFSDPQVQKALADTVLLQA NVTANDAQDVALLKHLNVLGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRDRQP" misc_feature complement(4466967..4468658) /gene="dipZ" /locus_tag="SF4290" /note="thiol:disulfide interchange protein precursor; Provisional; Region: dipZ; PRK00293" /db_xref="CDD:234717" gene complement(4468637..4468975) /gene="cutA" /locus_tag="SF4291" /db_xref="GeneID:1027771" CDS complement(4468637..4468975) /gene="cutA" /locus_tag="SF4291" /note="Code: P; COG: COG1324" /codon_start=1 /transl_table=11 /product="divalent-cation tolerance protein CutA" /protein_id="NP_710002.2" /db_xref="GeneID:1027771" /translation="MLDEKSSNTTSVVVLCTAPDEATAQDLAAKVLAEKLAACATLIP GATSLYYWEGKLEQEYEVQMILKTTVSHQQALLECLKSHHPYQTPELLVLPVTHGDTD YLSWLNASLR" misc_feature complement(4468640..4468975) /gene="cutA" /locus_tag="SF4291" /note="divalent cation tolerance protein CutA; Region: PRK10645" /db_xref="CDD:182614" gene complement(4469091..4470392) /gene="dcuA" /locus_tag="SF4292" /db_xref="GeneID:1027378" CDS complement(4469091..4470392) /gene="dcuA" /locus_tag="SF4292" /note="Code: R; COG: COG2704" /codon_start=1 /transl_table=11 /product="anaerobic C4-dicarboxylate transporter" /protein_id="NP_710003.1" /db_xref="GeneID:1027378" /translation="MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGN IPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFA GTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGH GISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIE IKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVI CKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLA VIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQ MDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML" misc_feature complement(4469094..4470392) /gene="dcuA" /locus_tag="SF4292" /note="anaerobic C4-dicarboxylate transporter; Reviewed; Region: PRK09412" /db_xref="CDD:236503" gene complement(4470510..4471991) /gene="aspA" /locus_tag="SF4293" /db_xref="GeneID:1026585" CDS complement(4470510..4471991) /gene="aspA" /locus_tag="SF4293" /note="Code: E; COG: COG1027" /codon_start=1 /transl_table=11 /product="aspartate ammonia-lyase" /protein_id="NP_710004.2" /db_xref="GeneID:1026585" /translation="MCLKQIIGSLKKKVHMSNNIRIEEDLLGTREVPADAYYGVHTLR AIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAACDEVLNNG KCMDQFPVDVYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTN DAYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQE FRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPC VPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQA GSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESVH ILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETG KSVREVVLERGLLTEAELDDIFSVQNLMHPAYKAKRYTDESEQ" misc_feature complement(4470528..4471946) /gene="aspA" /locus_tag="SF4293" /note="aspartate ammonia-lyase; Provisional; Region: aspA; PRK12273" /db_xref="CDD:237031" gene 4472283..4472759 /locus_tag="SF4294" /db_xref="GeneID:1025428" CDS 4472283..4472759 /locus_tag="SF4294" /note="Code: R; COG: COG3030" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710005.5" /db_xref="GeneID:1025428" /translation="MRWLPFIAIFLYVYIEISIFIQVAHVLGVLLTLVLVIFTSVIGM SLVRNQGFKNFVLMQQKMAAGENPAAEMIKSVSLIIAGLLLLLPGFFTDFLGLLLLLP PVQKHLTVKLMPHLRFSRMPGGGFSAGTGGGNTFDGEYQRKDDDRDRLDHKDDRQD" misc_feature 4472289..4472705 /locus_tag="SF4294" /note="phage T7 F exclusion suppressor FxsA; Reviewed; Region: fxsA; PRK11463" /db_xref="CDD:236913" gene complement(4472775..4474031) /gene="yjeH" /locus_tag="SF4295" /db_xref="GeneID:1026675" CDS complement(4472775..4474031) /gene="yjeH" /locus_tag="SF4295" /note="Code: E; COG: COG0531" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_710006.2" /db_xref="GeneID:1026675" /translation="MSGLKQELGLAQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWA WPVLIILVFPIAIVFAILGRHYPSACGVAHFVGMAFGSRLERVTGWLFLSVIPVGLPA ALQIAAGFGQAMFGWHSWQLLLAELGTLALVWYIGTLGASSSANLQTVIAGLIVALIV AIWWAGDIKPASIPFPAPGNIELTGLFAALSVMFWCFVGLEAFAHLASEFKNPERDFP RALMIGLLLAGLVYWGCTVVVLHFDAYGEQMAAAASLPKIVVQLFGVGALWIACVIGY LACFASLNIYIQSFARLVWSQAQHNPDHYLARLSSRHIPNNALNAVLGCCVVSTLVIH ALEINLDALIIYANGIFIMIYLLCMLAGCKLLQGRYRLLAVVGGLLCVLLLAMVGWKS LYALIMLVGLWLFLPKRKTPENGITT" misc_feature complement(4472799..4474010) /gene="yjeH" /locus_tag="SF4295" /note="putative transporter; Provisional; Region: PRK11021" /db_xref="CDD:236823" gene 4474307..4474600 /gene="groES" /locus_tag="SF4296" /db_xref="GeneID:1026575" CDS 4474307..4474600 /gene="groES" /locus_tag="SF4296" /note="Code: O; COG: COG0234" /codon_start=1 /transl_table=11 /product="co-chaperonin GroES" /protein_id="NP_710007.1" /db_xref="GeneID:1026575" /translation="MNIRPLHDRVIVKRKEVETKSAGGIVLTGSAAAKSTRGEVLAVG NGRILENGEVKPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA" misc_feature 4474307..4474594 /gene="groES" /locus_tag="SF4296" /note="co-chaperonin GroES; Reviewed; Region: groES; PRK00364" /db_xref="CDD:178988" misc_feature order(4474310..4474312,4474316..4474318,4474322..4474324, 4474331..4474333,4474412..4474417,4474478..4474480, 4474508..4474510,4474523..4474525,4474532..4474534, 4474580..4474588) /gene="groES" /locus_tag="SF4296" /note="oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:238197" misc_feature 4474358..4474399 /gene="groES" /locus_tag="SF4296" /note="mobile loop [active]" /db_xref="CDD:238197" misc_feature order(4474439..4474441,4474472..4474474) /gene="groES" /locus_tag="SF4296" /note="roof hairpin [active]" /db_xref="CDD:238197" gene 4474644..4476290 /gene="groEL" /locus_tag="SF4297" /db_xref="GeneID:1025527" CDS 4474644..4476290 /gene="groEL" /locus_tag="SF4297" /note="Code: O; COG: COG0459" /codon_start=1 /transl_table=11 /product="molecular chaperone GroEL" /protein_id="NP_710008.1" /db_xref="GeneID:1025527" /translation="MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITE GLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGK LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESP FILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAV KAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIID GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK KARVEDALHATRAAVEEGVVAGGGVALIRVASKLADLRGQNEDQNVGIKVALRAMEAP LRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA SVAGLMITTECMVTDLPKNDAADLGAAGGMGGMGGMGGMM" misc_feature 4474647..4476233 /gene="groEL" /locus_tag="SF4297" /note="chaperonin GroEL; Reviewed; Region: groEL; PRK00013" /db_xref="CDD:234573" misc_feature order(4474653..4474655,4474665..4474667,4474716..4474718, 4474749..4474760,4474764..4474766,4474779..4474784, 4474788..4474790,4474818..4474820,4474824..4474826, 4474848..4474850,4474860..4474862,4474869..4474871, 4475232..4475234,4475328..4475330,4475412..4475414, 4475793..4475795,4475799..4475801,4476018..4476020, 4476180..4476182,4476189..4476209) /gene="groEL" /locus_tag="SF4297" /note="ring oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:239460" misc_feature order(4474734..4474742,4474902..4474904,4474914..4474916, 4475091..4475093,4475835..4475837,4475886..4475888, 4476003..4476005,4476120..4476122,4476126..4476128) /gene="groEL" /locus_tag="SF4297" /note="ATP/Mg binding site [chemical binding]; other site" /db_xref="CDD:239460" misc_feature order(4474968..4474970,4475943..4475945,4475997..4475999, 4476024..4476026,4476030..4476035,4476042..4476044) /gene="groEL" /locus_tag="SF4297" /note="stacking interactions [active]" /db_xref="CDD:239460" misc_feature order(4475064..4475066,4475199..4475201,4475220..4475222, 4475766..4475768,4475868..4475873) /gene="groEL" /locus_tag="SF4297" /note="hinge regions; other site" /db_xref="CDD:239460" gene 4476395..4476781 /gene="yjeI" /locus_tag="SF4298" /db_xref="GeneID:1024269" CDS 4476395..4476781 /gene="yjeI" /locus_tag="SF4298" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710009.2" /db_xref="GeneID:1024269" /translation="MASSSLIMGNNMHVKYLAGIVGAALLMAGCSSSNELSAAGQSVR IVDEQPGAECQLIGTATGKQSNWLSGQHGEEGGSMRGAANDLRNQAAAMGGNVIYGIS SPSQGMLSSFVPTDSQIIGQVYKCPN" misc_feature 4476494..4476772 /gene="yjeI" /locus_tag="SF4298" /note="Domain of unknown function (DUF4156); Region: DUF4156; pfam13698" /db_xref="CDD:433411" gene complement(4476984..4477853) /gene="yjeJ" /locus_tag="SF4299" /db_xref="GeneID:1027069" CDS complement(4476984..4477853) /gene="yjeJ" /locus_tag="SF4299" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710010.2" /db_xref="GeneID:1027069" /translation="MAISIKGVNTGVIRKSNNFIALALKIKEPRNKESLFFMSVMELR DLLIALESRLHQKHKLDAAARLQYEQARDKVIKKMAENIPEILVDELKNADINRRVNT LELTDNQGENLTFVLTLHDGSKCELVVNELQIEMLARAIIHAINNAEMRELALRITSL LDFLPLYDVDCQDNGNLEYDTYSQPEWKHNLFDHYLAVLYRFKDESGKEQFSGAVVKT REATPGKEIEAITRRMLDFSPRLKKLAGVPCQVYVRTVAANNAQPLTQDQCLRALHHL RVQSTSKTAPQAK" misc_feature complement(4477005..4477853) /gene="yjeJ" /locus_tag="SF4299" /note="YjeJ-like; Region: YjeJ; pfam15922" /db_xref="CDD:292544" mobile_element 4477984..4478751 /mobile_element_type="insertion sequence:IS1" gene 4478039..4478314 /gene="insA" /locus_tag="SF4300" /db_xref="GeneID:1026841" CDS 4478039..4478314 /gene="insA" /locus_tag="SF4300" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_710011.1" /db_xref="GeneID:1026841" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 4478060..>4478311 /gene="insA" /locus_tag="SF4300" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4478341..4478736 /gene="insB" /locus_tag="SF4301" /db_xref="GeneID:1025899" CDS 4478341..4478736 /gene="insB" /locus_tag="SF4301" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_710012.1" /db_xref="GeneID:1025899" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 4478344..4478733 /gene="insB" /locus_tag="SF4301" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4479015..4480043) /gene="yjeK" /locus_tag="SF4302" /db_xref="GeneID:1025155" CDS complement(4479015..4480043) /gene="yjeK" /locus_tag="SF4302" /note="Code: E; COG: COG1509" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710013.1" /db_xref="GeneID:1025155" /translation="MAHIVTLNTPYREDWLTQLADVVTDPDELLRLLNIDADEKLLAG RSAKKLFALRVPRSFIDRMEKGNPDDPLLRQVLTSQDEFVVASGFSTDPLEEQHSVVP GLLHKYHNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWQTALEYVAAHPELDEM IFSGGDPLMAKEHELDWLLTQLEAIPHIKRLRIHSRLPIVIPARITEALVERFARSTL QILLVNHINHANEVDETFRQAMAKLRRVGVTLLNQSVLLRGVNDNAQTLANLSNALFD AGVMPYYLHVLDKVQGAAHFMVSDDEARQIMRELLTLVSGYLVPKLAREIGGEPSKTP LDLQLRQQ" misc_feature complement(4479039..4480001) /gene="yjeK" /locus_tag="SF4302" /note="EF-P beta-lysylation protein EpmB; Region: EFP_modif_epmB; TIGR03821" /db_xref="CDD:163533" gene 4480085..4480651 /gene="efp" /locus_tag="SF4303" /db_xref="GeneID:1025150" CDS 4480085..4480651 /gene="efp" /locus_tag="SF4303" /note="Code: J; COG: COG0231" /codon_start=1 /transl_table=11 /product="elongation factor P" /protein_id="NP_710014.1" /db_xref="GeneID:1025150" /translation="MATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGKGQAFARVKLR RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA VVKVPLFVQIGEVIKVDTRSGEYVSRVK" misc_feature 4480085..4480648 /gene="efp" /locus_tag="SF4303" /note="Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]; Region: Efp; COG0231" /db_xref="CDD:440001" gene 4480703..4480828 /gene="ecnA" /locus_tag="SF4304" /db_xref="GeneID:1025862" CDS 4480703..4480828 /gene="ecnA" /locus_tag="SF4304" /codon_start=1 /transl_table=11 /product="entericidin A" /protein_id="NP_710015.1" /db_xref="GeneID:1025862" /translation="MMKRLIVLVLLASTLLTGCNTACGFGEDIKHLGNSISRAAS" misc_feature 4480703..4480825 /gene="ecnA" /locus_tag="SF4304" /note="lipoprotein antitoxin entericidin A; Region: PRK09810" /db_xref="CDD:137533" gene 4480939..4481085 /gene="ecnB" /locus_tag="SF4305" /db_xref="GeneID:1027774" CDS 4480939..4481085 /gene="ecnB" /locus_tag="SF4305" /codon_start=1 /transl_table=11 /product="entericidin B" /protein_id="NP_710016.1" /db_xref="GeneID:1027774" /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGNAISGAAT KAQQ" misc_feature 4480939..4481082 /gene="ecnB" /locus_tag="SF4305" /note="lipoprotein toxin entericidin B; Region: PRK10081" /db_xref="CDD:170240" gene 4481111..4481578 /gene="sugE" /locus_tag="SF4306" /db_xref="GeneID:1027607" CDS 4481111..4481578 /gene="sugE" /locus_tag="SF4306" /note="Code: P; COG: COG2076" /codon_start=1 /transl_table=11 /product="groEL suppressor" /protein_id="NP_710017.2" /db_xref="GeneID:1027607" /translation="MPFVFSAIVIKVIVEIPLPPGKISVQPSALQDDLQTPLFTGDGP KFPEPDMSWIILVIAGLLEVVWAVGLKYTHGFSRLTPSVITVTAMIVSMALLAWAMKS LPVGTAYAVWTGIGAVGAAITGIVLLGESANPMRLASLALIVLGIIGLKLSTH" misc_feature 4481261..4481575 /gene="sugE" /locus_tag="SF4306" /note="quaternary ammonium compound efflux SMR transporter SugE; Region: PRK11431" /db_xref="CDD:171110" gene complement(4481575..4482108) /gene="blc" /locus_tag="SF4307" /db_xref="GeneID:1027608" CDS complement(4481575..4482108) /gene="blc" /locus_tag="SF4307" /note="Code: M; COG: COG3040" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein Blc" /protein_id="NP_710018.1" /db_xref="GeneID:1027608" /translation="MRLLPLVAAATAAFLVVACSFPTPPRGVTVVNNFDAKRYLGTWY EIARFDHRFERGLEKVTATYSLRDDGGLNVINKGYNPDRGMWQQSEGKAYFTGAPTRA ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTISDEVKQEMLAVAT REGFDVSKFIWVQQPGS" misc_feature complement(4481578..4482108) /gene="blc" /locus_tag="SF4307" /note="outer membrane lipoprotein Blc; Provisional; Region: PRK10477" /db_xref="CDD:182489" gene complement(4482197..4483330) /gene="ampC" /locus_tag="SF4308" /db_xref="GeneID:1027491" CDS complement(4482197..4483330) /gene="ampC" /locus_tag="SF4308" /note="Code: M; COG: COG1680" /codon_start=1 /transl_table=11 /product="beta-lactamase/D-alanine carboxypeptidase" /protein_id="NP_710019.2" /db_xref="GeneID:1027491" /translation="MFKTTLCALLITASYSTFAAPQQINDIVHRTITPLIEQQKIPGM AVAVIYQGKPYYFTWGYADIAKKQPVTQQTLFELGSVSKTFTGVLGGDAIARGEIKLS DPATKYWPELTAKQWNGITLLHLATYTAGGLPLQVPDEVKSSSDLLRFYQNWQPAWAP GTQRLYANSSIGLFGALAVKPSGLSFEQAMQTRVFQPLKLNHTWINVPPPEEKNYAWG YREGKAVHVSPGALDAEAYGVKSTIEDMARWVQSNLPPLDINEKTLQQGIQLAQSRYW QTGDMYQGLGWEMLDWPVNPDSIINGSDNKIALAARPVKAIKPPTPAVRASWVHKTGA TGGFGSYVAFIPEKELGIVMLANKNYPNPARVAAACQILNALQ" misc_feature complement(4482200..4483330) /gene="ampC" /locus_tag="SF4308" /note="beta-lactamase/D-alanine carboxypeptidase; Provisional; Region: ampC; PRK11289" /db_xref="CDD:236894" gene complement(4483393..4483752) /gene="frdD" /locus_tag="SF4309" /db_xref="GeneID:1027357" CDS complement(4483393..4483752) /gene="frdD" /locus_tag="SF4309" /note="Code: C; COG: COG3080" /codon_start=1 /transl_table=11 /product="fumarate reductase subunit D" /protein_id="NP_710020.2" /db_xref="GeneID:1027357" /translation="MINPNPKRSDEPVFWGLFGAGGMWSAIIAPVMILLVGILLPLGL FPGDALSYERVLAFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY GLAAILTVVTLIGVVTI" misc_feature complement(4483396..4483749) /gene="frdD" /locus_tag="SF4309" /note="fumarate reductase subunit FrdD; Region: PRK05470" /db_xref="CDD:180105" misc_feature complement(order(4483486..4483488,4483708..4483710, 4483717..4483719,4483726..4483731)) /gene="frdD" /locus_tag="SF4309" /note="Iron-sulfur protein interface [active]" /db_xref="CDD:238307" misc_feature complement(order(4483696..4483701,4483708..4483710)) /gene="frdD" /locus_tag="SF4309" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:238307" misc_feature complement(order(4483396..4483398,4483417..4483419, 4483480..4483488,4483504..4483509,4483537..4483539, 4483576..4483578,4483585..4483587,4483591..4483593, 4483597..4483599,4483630..4483632,4483675..4483677, 4483687..4483689)) /gene="frdD" /locus_tag="SF4309" /note="C-subunit interface [active]" /db_xref="CDD:238307" misc_feature complement(order(4483579..4483581,4483588..4483593, 4483645..4483647,4483657..4483659)) /gene="frdD" /locus_tag="SF4309" /note="distal quinone binding site; other site" /db_xref="CDD:238307" gene complement(4483763..4484158) /gene="frdC" /locus_tag="SF4310" /db_xref="GeneID:1026766" CDS complement(4483763..4484158) /gene="frdC" /locus_tag="SF4310" /note="Code: C; COG: COG3029" /codon_start=1 /transl_table=11 /product="fumarate reductase subunit C" /protein_id="NP_710021.1" /db_xref="GeneID:1026766" /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI FALFALKNGPEAWAGFVDFLQNPVIVIINLITLTAALLHTKTWFELAPKAANIIVKDE KMGPEPIIKSLWAVTVVATIVILFVALYW" misc_feature complement(4483769..4484158) /gene="frdC" /locus_tag="SF4310" /note="fumarate reductase subunit FrdC; Region: PRK04987" /db_xref="CDD:235327" misc_feature complement(order(4483775..4483777,4483787..4483789, 4483871..4483873,4483877..4483882,4483889..4483891, 4483898..4483900,4483907..4483912,4483928..4483930, 4483940..4483942,4483964..4483966,4483988..4483990, 4484006..4484011,4484015..4484017,4484027..4484029, 4484039..4484044,4484057..4484059,4484063..4484065, 4484069..4484074,4484081..4484083,4484090..4484095, 4484099..4484101,4484111..4484113,4484117..4484119, 4484123..4484125,4484129..4484131,4484135..4484146)) /gene="frdC" /locus_tag="SF4310" /note="D-subunit interface [polypeptide binding]; other site" /db_xref="CDD:238306" misc_feature complement(order(4483871..4483873,4483880..4483882, 4483889..4483891,4484072..4484074,4484081..4484083, 4484090..4484095,4484099..4484101,4484123..4484125, 4484129..4484131,4484135..4484137,4484141..4484146)) /gene="frdC" /locus_tag="SF4310" /note="Iron-sulfur protein interface [active]" /db_xref="CDD:238306" misc_feature complement(order(4483889..4483891,4483898..4483900, 4484069..4484074)) /gene="frdC" /locus_tag="SF4310" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:238306" misc_feature complement(4483775..4483777) /gene="frdC" /locus_tag="SF4310" /note="distal quinone binding site [chemical binding]; other site" /db_xref="CDD:238306" gene complement(4484169..4484903) /gene="frdB" /locus_tag="SF4311" /db_xref="GeneID:1026842" CDS complement(4484169..4484903) /gene="frdB" /locus_tag="SF4311" /note="Code: C; COG: COG0479" /codon_start=1 /transl_table=11 /product="fumarate reductase iron-sulfur subunit" /protein_id="NP_710022.2" /db_xref="GeneID:1026842" /translation="MAEMKNLKIEVVRYNPEVDTAPHSAFYEVPYDATTSLLDALGYI KDNLAPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTDGMKVEALANFPIERD LVVDMTHFIESLEAIKPYIIGNSRTADQGTNIQTPAQMAKYHQFSGCINCGLCYAACP QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFVGYCSEVCPKH VDPAAAIQQGKVESSKDFLIATLKPR" misc_feature complement(4484172..4484903) /gene="frdB" /locus_tag="SF4311" /note="succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Region: PRK12385" /db_xref="CDD:183490" gene complement(4484896..4486704) /gene="frdA" /locus_tag="SF4312" /db_xref="GeneID:1025854" CDS complement(4484896..4486704) /gene="frdA" /locus_tag="SF4312" /note="Code: C; COG: COG1053" /codon_start=1 /transl_table=11 /product="fumarate reductase flavoprotein subunit" /protein_id="NP_710023.1" /db_xref="GeneID:1025854" /translation="MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS HTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLELWGC PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD ILVDDGHVRGLVAINMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVYLDLRHLGEKKLHERLPFICE LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCETRIKGLFAVGECSSVGLHGANRL GSNSLAELVVFGRLAGEQATERAATAGNGNEAAIEAQAAGVEQRLKDLVNQDGGENWA KIRDEMGLAMEEGCGIYRTPELMQKTIDKLAELQERFKRVRITDTSSVFNTDLLYTIE LSHGLNVAECMAHSAMARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY SDVKITTLPPAKRVYGGEADAADKAEAANNKEKANG" misc_feature complement(4484956..4486701) /gene="frdA" /locus_tag="SF4312" /note="fumarate reductase flavoprotein subunit; Validated; Region: PRK09231" /db_xref="CDD:236421" gene 4487029..4488006 /gene="yjeA" /locus_tag="SF4313" /db_xref="GeneID:1025474" CDS 4487029..4488006 /gene="yjeA" /locus_tag="SF4313" /note="Code: J; COG: COG2269" /codon_start=1 /transl_table=11 /product="poxB regulator PoxA" /protein_id="NP_710024.1" /db_xref="GeneID:1025474" /translation="MSETASWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS QATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNE EMGRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCPAAESLSYQQAFLRYLEID PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEPNIGKEKPTFVYHFPAS QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ HPIDQNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDRA" misc_feature 4487062..4487979 /gene="yjeA" /locus_tag="SF4313" /note="elongation factor P--(R)-beta-lysine ligase; Region: PRK09350" /db_xref="CDD:236474" misc_feature 4488183..4490457 /note="Similar to Escherichia coli K12 transport gi: 1790600 (515 aa). BLAST with identity of 97% in 758 aa. This CDS has been disrupted by insertion. The sequence has been checked and is believed to be correct." mobile_element complement(4488392..4489159) /mobile_element_type="insertion sequence:IS1" gene complement(4488407..4488802) /gene="insB" /locus_tag="SF4315" /db_xref="GeneID:1023614" CDS complement(4488407..4488802) /gene="insB" /locus_tag="SF4315" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_710025.1" /db_xref="GeneID:1023614" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(4488410..4488799) /gene="insB" /locus_tag="SF4315" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4488829..4489104) /gene="insA" /locus_tag="SF4316" /db_xref="GeneID:1027374" CDS complement(4488829..4489104) /gene="insA" /locus_tag="SF4316" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_710026.1" /db_xref="GeneID:1027374" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<4488832..4489083) /gene="insA" /locus_tag="SF4316" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4489167..4490494 /locus_tag="SF4316a" /pseudogene="unknown" /db_xref="GeneID:16608373" gene complement(4490645..4493956) /gene="yjeP" /locus_tag="SF4317" /db_xref="GeneID:1026576" CDS complement(4490645..4493956) /gene="yjeP" /locus_tag="SF4317" /note="Code: M; COG: COG3264" /codon_start=1 /transl_table=11 /product="mechanosensitive ion channel MscS" /protein_id="NP_710027.1" /db_xref="GeneID:1026576" /translation="MRLIITFLMAWCLSWGAYAATAPDSKQITQELEQAKAAKPAQPE VVEALQSALNALEERKGSLERIKQYQQVIDNYPKLSATLRAQLNNIRDEPRSVSPGMS TDALNQEILQVSSQLLDKSRQAQQEQERAREIADSLNQLPQQQTDSRRQLNEIERRLG TLTGNTPLNQAQNFALQSDSARLKALVDELELAQLSANNRQELARLRSELAEKESQQL DAYLQALRNQLNSQRQLEAERALESTELLAENSADLPKDIVAQFKINRELSAALNQQA QRMELVASQQRQAASQTLQVRQALNTLREQSQWLGSSNLLGEALRAQVARLPEMPKPQ QLDTEMAQLRVQRLRYEDLLNKQPLLRQIHQADGQPLTAEQNRILEAQLRTQRELLNS LLQGGDTLLLELTKLKVSNRQLEDALKEVNEATHRYLFWASDVRPMTIAWPLEIAQDL RRLISLDTFSQLGKASVMMLTSKETILPLFGALILVGCSIYSRRYFTRFLERSAAKVG KVTQDHFWLTLRTLFWSILVASPLPVLWMTLGYGLREAWPYPLAVAIGDGVTATVPLL WVVMICATFARPNGLFIAHFGWPRERVSRGMRYYLMSIGLIMALMMFDNLDDREFSGS LGRLCFILICGALAVVTLSLKKAGIPLYLNKEGSGDNITNHMLWNMMIGAPLVAILAS AVGYLATAQALLARLETSVAIWFLLLVVYHVIRRWMLIQRRRLAFDRAKHRRAEMLAQ RARGEEEAHHHSSPEGAIEVDESEVDLDAISAQSLRLVRSILMLIALLSVIVLWSEIH SAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLELAIL QHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFGLQEI FANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNKAFIT EQFINWSLSDSVTRVVLTIPAPADANSEEVTEILLTAARRCSLVIDNPAPEVFLVDLQ QGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFHAHGIDMPFPPFQMRLESLNGKQTG RTLTSAGKGRQAGSL" misc_feature complement(4490648..4493956) /gene="yjeP" /locus_tag="SF4317" /note="putative mechanosensitive channel protein; Provisional; Region: PRK10929" /db_xref="CDD:236798" gene complement(4493978..4494946) /gene="psd" /locus_tag="SF4318" /db_xref="GeneID:1023588" CDS complement(4493978..4494946) /gene="psd" /locus_tag="SF4318" /note="Code: I; COG: COG0688" /codon_start=1 /transl_table=11 /product="phosphatidylserine decarboxylase" /protein_id="NP_710028.1" /db_xref="GeneID:1023588" /translation="MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKY YKVDMKEAQKPDTASYRTFNEFFVRPLRDEVRPIDTDPNVLVMPADGVISQLGKIEED KILQAKGHNYSLEALLAGNYLMADLFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTIT PPREGIIKRWTWPAGENDGSVALLKGQEMGRFKLGSTVINLFAPGKVNLVEQLESLSV TKIGQPLAVSTETFVTPDAEPAPLPAEEIEAEHDASPLVDDKKDQV" misc_feature complement(4494080..4494946) /gene="psd" /locus_tag="SF4318" /note="phosphatidylserine decarboxylase; Reviewed; Region: psd; PRK00044" /db_xref="CDD:234591" gene complement(4495043..4496128) /gene="yjeQ" /locus_tag="SF4320" /db_xref="GeneID:1025377" CDS complement(4495043..4496128) /gene="yjeQ" /locus_tag="SF4320" /note="Code: R; COG: COG1162" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710029.3" /db_xref="GeneID:1025377" /translation="MPIRGDQESVRLSKNKLSKGQQRRVNANHQRRLKTSKEKPDYDD NLFGEPDEGIVISRFGMHADVESADGDVHRCNIRRTIRSLVTGDRVVWRPGKPAAEGV NVKGIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVACE TLQIEPIIVLNKIDLLDDEGMAFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLAEALTG RISIFAGQSGVGKSSLLNALLGLQKEILTNDVSDNSGLGQHTTTAARLYHFPHGGDVI DSPGVREFGLWHLEPEQITQGFVEFHDYLGLCKYRDCKHDTDPGCAIREAVEEGKIAE TRFENYHRILESMAQVKTRKNFSDTDD" misc_feature complement(4495046..4496092) /gene="yjeQ" /locus_tag="SF4320" /note="small ribosomal subunit biogenesis GTPase RsgA; Region: PRK12288" /db_xref="CDD:237039" gene 4496121..4496735 /gene="yjeR" /locus_tag="SF4319" /db_xref="GeneID:1024781" CDS 4496121..4496735 /gene="yjeR" /locus_tag="SF4319" /note="Code: F; COG: COG1949" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710030.4" /db_xref="GeneID:1024781" /translation="MGKTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPE RDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKAST MGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEVYFHYRYLDVSTL KELARRWKPEILDGFTKQGTHQAMDDIRESVAELAYYREHFIKL" misc_feature 4496199..4496732 /gene="yjeR" /locus_tag="SF4319" /note="oligoribonuclease; Provisional; Region: PRK05359" /db_xref="CDD:235429" misc_feature order(4496223..4496234,4496238..4496240,4496508..4496513, 4496517..4496525,4496661..4496663,4496676..4496678) /gene="yjeR" /locus_tag="SF4319" /note="putative active site [active]" /db_xref="CDD:99838" misc_feature order(4496223..4496234,4496238..4496240,4496508..4496513, 4496517..4496522,4496661..4496663,4496676..4496678) /gene="yjeR" /locus_tag="SF4319" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:99838" misc_feature order(4496223..4496225,4496229..4496231,4496523..4496525, 4496661..4496663,4496676..4496678) /gene="yjeR" /locus_tag="SF4319" /note="catalytic site [active]" /db_xref="CDD:99838" misc_feature order(4496292..4496294,4496517..4496522,4496529..4496531, 4496538..4496540,4496577..4496582,4496586..4496588, 4496595..4496597,4496604..4496606,4496619..4496624, 4496715..4496717,4496721..4496726) /gene="yjeR" /locus_tag="SF4319" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99838" gene 4496946..4497021 /locus_tag="SF4547" /db_xref="GeneID:3161828" tRNA 4496946..4497021 /locus_tag="SF4547" /product="tRNA-Gly" /codon_recognized="GGC" /db_xref="GeneID:3161828" gene 4497179..4497254 /locus_tag="SF4548" /db_xref="GeneID:3161829" tRNA 4497179..4497254 /locus_tag="SF4548" /product="tRNA-Gly" /codon_recognized="GGC" /db_xref="GeneID:3161829" gene 4497290..4497365 /locus_tag="SF4549" /db_xref="GeneID:3161830" tRNA 4497290..4497365 /locus_tag="SF4549" /product="tRNA-Gly" /codon_recognized="GGC" /db_xref="GeneID:3161830" gene 4497401..4497476 /locus_tag="SF4550" /db_xref="GeneID:3161831" tRNA 4497401..4497476 /locus_tag="SF4550" /product="tRNA-Gly" /codon_recognized="GGC" /db_xref="GeneID:3161831" gene complement(4497746..4498885) /gene="yjeS" /locus_tag="SF4322" /db_xref="GeneID:1023436" CDS complement(4497746..4498885) /gene="yjeS" /locus_tag="SF4322" /note="Code: C; COG: COG1600" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710031.2" /db_xref="GeneID:1023436" /translation="MSEPLDLNQLAQKIKQWGLELGFQQVGITDTDLSESEPKLQAWL DKQYHGEMDWMARHGMLRARPHELLPGTLRVISVRMNYLPANAAFASTLKNPKLGYVS RYALGRDYHKLLRNRLKKLGEMIQQHCVSLNFRPFVDSAPILERPLAEKAGLGWTGKH SLILNREAGSFFFLGELLVDIPLPVDQPVEEGCGKCVACMTICPTGAIVEPYTVDARR CISYLTIELEGALPEELRPLMGNRIYGCDDCQLICPWNRYSQLTTEDDFSPRKPLHAP ELIELFAWSEEKFLKVTEGSAIRRIGHLRWLRNIAVALGNAPWDETILTALESRKGEH PLLDEHIAWAIAQQIERRNACIVEVQLPKKQRLVRVIEKGLPRDA" misc_feature complement(4497842..4498846) /gene="yjeS" /locus_tag="SF4322" /note="epoxyqueuosine reductase; Region: TIGR00276" /db_xref="CDD:272993" gene 4498884..4500431 /gene="yjeF" /locus_tag="SF4321" /db_xref="GeneID:1026577" CDS 4498884..4500431 /gene="yjeF" /locus_tag="SF4321" /codon_start=1 /transl_table=11 /product="carbohydrate kinase" /protein_id="NP_710032.2" /db_xref="GeneID:1026577" /translation="MTDHTMKKNPVSIPHTVWYADDIRRGEREAADVLGLTLYELMLR AGEAAFQVCRSAYPDARHWLVLCGHGNNGGDGYVVARLAKAVGIEVTLLAQESDKPLP EEAALAREAWLNAGGEIHASNIVWPESVDLIVDALLGTGLQQAPRESISQLIDHANSH PAPIVAVDIPSGLLAETGATPGAVINADHTITFIALKLGLLTGKARDVTGQLHFDSLG LDSWLAGQETKIQRFSAEQLSHWLKPRRPTSHKGDHGRLVIIGGDHGTAGAIRMTGEA ALRAGAGLVRVLTRSENIAPLLTARPELMVHELTMDSLTESLEWADVVVIGPGLGQQE WGKKALQKVENFRKPMLWDADALNLLAINPDKRHNRVITPHPSEAARLLGCSVAEIES DRLHCAKRLVQRYGGVAVLKGAGTVVAAHPDALGIIDAGNAGMASGGMGDVLSGIIGA LLGQKLSPYDAACAGCVAHGAAADVLAARFGTRGMLATDLFSTLQRIVNPEVTDKNHD ESSNSAP" misc_feature 4498884..4500407 /gene="yjeF" /locus_tag="SF4321" /note="putative carbohydrate kinase; Provisional; Region: PRK10565" /db_xref="CDD:182554" gene 4500403..4500864 /gene="yjeE" /locus_tag="SF4323" /db_xref="GeneID:1026824" CDS 4500403..4500864 /gene="yjeE" /locus_tag="SF4323" /note="Code: R; COG: COG0802" /codon_start=1 /transl_table=11 /product="ADP-binding protein" /protein_id="NP_710033.1" /db_xref="GeneID:1026824" /translation="MMNRVIPLPDEQATLDLGERVAKACDGATVIYLYGDLGAGKTTF SRGFLQALGHQGNVKSPTYTLVEPYTLDNLMVYHFDLYRLADPEELEFMGIRDYFAND AICLVEWPQQGTGVLPDPDVEIHIDYQAQGREARVSAVSSAGELLLARLAG" misc_feature 4500403..4500861 /gene="yjeE" /locus_tag="SF4323" /note="tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE; Region: PRK10646" /db_xref="CDD:182615" gene 4500883..4502220 /gene="amiB" /locus_tag="SF4324" /db_xref="GeneID:1025755" CDS 4500883..4502220 /gene="amiB" /locus_tag="SF4324" /note="Code: M; COG: COG0860" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="NP_710034.2" /db_xref="GeneID:1025755" /translation="MMYRIRNWLVATLLLLCTPVGAATLSDIQVSNGNQQARITLSFI GDPDYAFSHQSKRTVALDIKQTGMIQGLPLLFSGNNLVKAIRSGTPKDAQTLRLVVDL TENGKTEAVKRQNGSNYTVVFTINADVPPPPPPPPVVAKRVETPAVVAPRVSEPARNP FKTESNRTTGVISSNTVTRPAARATANTGDKIIIAIDAGHGGQDPGAIGPGGTREKNV TIAIARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVAHKQNANFLVSIHADAAPNR SATGASVWVLSNRRANSEMASWLEQHEKLSELLGGAGDVLANSQSDPYLSQAVLDLQF GHSQRVGYDVATSMISQLQRIGEIHKRRPEHASLGVLRSPDIPSVLVETGFISNNSEE RLLASDDYQQQLAEAIYKGLRNYFLAHPMQSAPQGATAQTASTVTTPDRTLPN" misc_feature 4500883..4502217 /gene="amiB" /locus_tag="SF4324" /note="N-acetylmuramoyl-l-alanine amidase II; Provisional; Region: PRK10431" /db_xref="CDD:236692" gene 4502230..4504077 /gene="mutL" /locus_tag="SF4325" /db_xref="GeneID:1027072" CDS 4502230..4504077 /gene="mutL" /locus_tag="SF4325" /note="Code: L; COG: COG0323" /codon_start=1 /transl_table=11 /product="DNA mismatch repair protein" /protein_id="NP_710035.2" /db_xref="GeneID:1027072" /translation="MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDI DIERGGAKLIRIRDNGCGIKKDELALALARHATSKIASLDDLEAIISLGFRGEALASI SSVSRLTLTSRTAEQQEAWQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKF LRTEKTEFSHIDEIIRRIALARFDVTINLSHNGKIVRQYRAVPEGGQKERRLGAICGT AFLEQALAIEWQHGDLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQAC EDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL ETPLPLDDEPQPAPRAIPENRVAAGRNHFAEPAAREPVAPRYSPAPASGSRPAAPWPN AQPGYQKQQGEVYRQLLQTPAPMQKPKAPEPQEPALAANSQSFGRVLTIVHSDCALLE RDGNISLLSLPVAERWLRQAQLTPGEAPVCAQPLLIPLRLKVSGEEKSALEKAQSALA ELGIDFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAKQSVFEPGNIAQWIARNLM SEHAQWSMAQAITLLADVERLCPQLVKTPPGGLLQSVDLHPAIKALKDE" misc_feature 4502230..4504068 /gene="mutL" /locus_tag="SF4325" /note="DNA mismatch repair endonuclease MutL; Region: mutL; PRK00095" /db_xref="CDD:234630" gene 4504070..4505020 /gene="miaA" /locus_tag="SF4326" /db_xref="GeneID:1026857" CDS 4504070..4505020 /gene="miaA" /locus_tag="SF4326" /note="Code: J; COG: COG0324" /codon_start=1 /transl_table=11 /product="tRNA delta(2)-isopentenylpyrophosphate transferase" /protein_id="NP_710036.1" /db_xref="GeneID:1026857" /translation="MSDISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSV LIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIP LLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARI HPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRF HQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYLEGEISYDEMVYRGVCATR QLAKRQITWLRGWEGVHWLDSEKPEQARDEVLQVVGAIAG" misc_feature 4504097..4505002 /gene="miaA" /locus_tag="SF4326" /note="tRNA A37 N6-isopentenylltransferase MiaA [Translation, ribosomal structure and biogenesis]; Region: MiaA; COG0324" /db_xref="CDD:440093" gene 4505106..4505414 /gene="hfq" /locus_tag="SF4327" /db_xref="GeneID:1025853" CDS 4505106..4505414 /gene="hfq" /locus_tag="SF4327" /note="Code: R; COG: COG1923" /codon_start=1 /transl_table=11 /product="RNA-binding protein Hfq" /protein_id="NP_710037.1" /db_xref="GeneID:1025853" /translation="MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVI LLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE " misc_feature 4505106..4505333 /gene="hfq" /locus_tag="SF4327" /note="RNA-binding protein Hfq; Provisional; Region: hfq; PRK00395" /db_xref="CDD:179001" misc_feature order(4505121..4505129,4505136..4505138,4505181..4505195, 4505217..4505225,4505229..4505234,4505253..4505297) /gene="hfq" /locus_tag="SF4327" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:212463" misc_feature order(4505169..4505189,4505193..4505246) /gene="hfq" /locus_tag="SF4327" /note="Sm1 motif; other site" /db_xref="CDD:212463" misc_feature order(4505178..4505180,4505190..4505204,4505241..4505243, 4505259..4505261,4505283..4505288,4505292..4505294) /gene="hfq" /locus_tag="SF4327" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:212463" misc_feature 4505256..4505291 /gene="hfq" /locus_tag="SF4327" /note="Sm2 motif; other site" /db_xref="CDD:212463" gene 4505490..4506770 /gene="hflX" /locus_tag="SF4328" /db_xref="GeneID:1026965" CDS 4505490..4506770 /gene="hflX" /locus_tag="SF4328" /note="Code: R; COG: COG2262" /codon_start=1 /transl_table=11 /product="GTPase HflX" /protein_id="NP_710038.1" /db_xref="GeneID:1026965" /translation="MFDRYDAGEQAVLVHIYFTQDKDMEDLQEFESLVSSAGVEALQV ITGSRKAPHPKYFVGEGKAVEIAEAVKAMGASVVLFDHALSPAQERNLERLCECRVID RTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQL ETDRRLLRNRIVQIQSRLERVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNRIT EARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ ATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLEDFEPRIDRDEE NKPIRVWLSAQTGAGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKE WMEEDGSVSLQVRMPIVDWRRLCKQEPALIDYLI" misc_feature 4505490..4506767 /gene="hflX" /locus_tag="SF4328" /note="GTPase HflX; Provisional; Region: PRK11058" /db_xref="CDD:182934" gene 4506856..4508115 /gene="hflK" /locus_tag="SF4329" /db_xref="GeneID:1025055" CDS 4506856..4508115 /gene="hflK" /locus_tag="SF4329" /note="Code: O; COG: COG0330" /codon_start=1 /transl_table=11 /product="FtsH protease regulator HflK" /protein_id="NP_710039.1" /db_xref="GeneID:1025055" /translation="MAWNQPGNNGQDRDPWGSSKPGGNSEGNGNKGGRDQGPPDLDDI FRKLSKKLGGLGGGKGTGSGGGSSSQGPRPQLGGRVVTIAAAAIVIIWAASGFYTIKE AERGVVTRFGKFSHLVEPGLNWKPTFIDEVKPVNVEAVRELAASGVMLTSDENVVRVE MNVQYRVTNPEKYLYSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQR ELEETIRPYDMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYSNEVQ PRANGQAQRILEEARAYKAQTILEAQGEVARFAKLLPEYKAAPEITRERLYIETMEKV LGNTRKVLVNDKGGNLMVLPLDQMLKGGNAPAAKSDNGASNLLRLPPASSSTTSGASN TSSTSQGDIMDQRRANAQRNDYQRQGE" misc_feature 4506856..4508112 /gene="hflK" /locus_tag="SF4329" /note="FtsH protease activity modulator HflK; Region: PRK10930" /db_xref="CDD:236799" gene 4508118..4509122 /gene="hflC" /locus_tag="SF4330" /db_xref="GeneID:1025061" CDS 4508118..4509122 /gene="hflC" /locus_tag="SF4330" /note="Code: O; COG: COG0330" /codon_start=1 /transl_table=11 /product="FtsH protease regulator HflC" /protein_id="NP_710040.1" /db_xref="GeneID:1025061" /translation="MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNK PLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSR YYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSA GTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE VSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGD AEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR " misc_feature 4508118..4509119 /gene="hflC" /locus_tag="SF4330" /note="protease modulator HflC; Region: PRK11029" /db_xref="CDD:182913" gene 4509204..4509401 /gene="yjeT" /locus_tag="SF4331" /db_xref="GeneID:1027381" CDS 4509204..4509401 /gene="yjeT" /locus_tag="SF4331" /note="Code: S; COG: COG3242" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710041.1" /db_xref="GeneID:1027381" /translation="MNSTIWLALALVLVLEGLGPMLYPKAWKKMISAMTNLPDNILRR FGGGLVVAGVVVYYMLRKTIG" misc_feature 4509204..>4509338 /gene="yjeT" /locus_tag="SF4331" /note="Uncharacterized conserved protein YjeT, DUF2065 family [Function unknown]; Region: yjeT; COG3242" /db_xref="CDD:442474" gene 4509505..4510803 /gene="purA" /locus_tag="SF4332" /db_xref="GeneID:1023524" CDS 4509505..4510803 /gene="purA" /locus_tag="SF4332" /note="Code: F; COG: COG0104" /codon_start=1 /transl_table=11 /product="adenylosuccinate synthetase" /protein_id="NP_710042.1" /db_xref="GeneID:1023524" /translation="MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTL VINGEKTVLHLIPSGILRENVTSIIGNGVVLSPAALMKEMKELEDRGIPVRERLLLSE ACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAE KLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDF VMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGA GPFPAELFDETGEFLCKQGNEFGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLD VLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGL PQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA" misc_feature 4509508..4510800 /gene="purA" /locus_tag="SF4332" /note="adenylosuccinate synthetase; Provisional; Region: PRK01117" /db_xref="CDD:234904" misc_feature order(4509538..4509561,4509619..4509633,4509886..4509894, 4510174..4510179,4510189..4510191,4510219..4510224, 4510324..4510329,4510399..4510410,4510414..4510416, 4510420..4510422,4510498..4510500,4510504..4510509, 4510747..4510758) /gene="purA" /locus_tag="SF4332" /note="active site" /db_xref="CDD:349762" misc_feature order(4509715..4509717,4509811..4509813,4509817..4509819, 4509856..4509858,4509883..4509885,4509907..4509909, 4509916..4509942,4509946..4509948,4510120..4510125, 4510132..4510134,4510195..4510206,4510210..4510215, 4510219..4510221,4510225..4510227,4510243..4510248, 4510252..4510257,4510264..4510269,4510456..4510458, 4510465..4510476) /gene="purA" /locus_tag="SF4332" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349762" gene 4511008..4511433 /gene="yjeB" /locus_tag="SF4333" /db_xref="GeneID:1024386" CDS 4511008..4511433 /gene="yjeB" /locus_tag="SF4333" /note="Code: K; COG: COG1959" /codon_start=1 /transl_table=11 /product="transcriptional repressor NsrR" /protein_id="NP_710043.1" /db_xref="GeneID:1024386" /translation="MQLTSFTDYGLRALIYMASLPEGRMTSISEVTDVYGVSRNHMVK IINQLSRAGYVTAVRGKNGGIRLGKPASAIRIGDVVRELEPLSLVNCSSEFCHITPAC RLKQALSKAVQSFLTELDNYTLADLVEENQPLYKLLLVE" misc_feature 4511008..4511430 /gene="yjeB" /locus_tag="SF4333" /note="HTH-type transcriptional repressor NsrR; Region: PRK11014" /db_xref="CDD:236820" gene 4511430..4513913 /gene="vacB" /locus_tag="SF4334" /db_xref="GeneID:1025395" CDS 4511430..4513913 /gene="vacB" /locus_tag="SF4334" /note="Code: K; COG: COG0557" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710044.3" /db_xref="GeneID:1025395" /translation="MTKIFIRDDNGGTEMSQDPFQEREAEKYANPIPSREFILEHLTK REKPASRDELAVELHIEGEEQLEGLRRRLRAMERDGQLVFTRRQCYALPERLDLVKGT VIGHRDGYGFLRVEGRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLV PKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPPDQIMGARMGFVVVVELTQRPTRRT KAVGKIVEVLGDNMGTGMAVDIALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKAGRVD LRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRG TSVYFPSQVIPMLPEVLSNGLCSLNPQVDRLCMVCEMTVSSKGRLTGYKFYEAVMSSH ARLTYTKVWHILQGDQDLREQYAPLVKHLEELHNLYKVLDKAREERGGISFESEEAKF IFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEPALFRIHDKPSTEAI TSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLLRSMKQAIYDPEN RGHFGLALQSYAHFTSPIRRYPDLTLHRAIKYLLAKEQGHQGNTTETGGYHYSMEEML QLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFFVRLDDLFI DGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKIDFSLIS SERAPRNVGKTAREKAKKGDAGKKGGKRCQVGKKVNFEPDSAFRGEKKTKPKAAKKDA RKAKKPSAKTQKIAAATKAKRAAKKKVAE" misc_feature 4511472..4513910 /gene="vacB" /locus_tag="SF4334" /note="ribonuclease R; Region: PRK11642" /db_xref="CDD:236944" gene 4514093..4514824 /gene="yjfH" /locus_tag="SF4335" /db_xref="GeneID:1026691" CDS 4514093..4514824 /gene="yjfH" /locus_tag="SF4335" /note="Code: J; COG: COG0566" /codon_start=1 /transl_table=11 /product="23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB" /protein_id="NP_710045.1" /db_xref="GeneID:1026691" /translation="MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALE SQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLILDG VTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART MRMLQEENIWIVGTAGEADHTLYQSKMTGRLALVMGAEGEGMRRLTREHCDELISIPM AGSVSSLNVSVATGICLFEAVRQRS" misc_feature 4514093..4514821 /gene="yjfH" /locus_tag="SF4335" /note="23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; Region: PRK11181" /db_xref="CDD:183021" mobile_element 4514870..4515637 /mobile_element_type="insertion sequence:IS1" gene 4514925..4515200 /gene="insA" /locus_tag="SF4336" /db_xref="GeneID:1027397" CDS 4514925..4515200 /gene="insA" /locus_tag="SF4336" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_710046.1" /db_xref="GeneID:1027397" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YIASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 4514946..>4515197 /gene="insA" /locus_tag="SF4336" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4515227..4515622 /gene="insB" /locus_tag="SF4337" /db_xref="GeneID:1025274" CDS 4515227..4515622 /gene="insB" /locus_tag="SF4337" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_710047.1" /db_xref="GeneID:1025274" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 4515230..4515619 /gene="insB" /locus_tag="SF4337" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 4515888..4516526 /gene="yjfM" /locus_tag="SF4338" /db_xref="GeneID:1026807" CDS 4515888..4516526 /gene="yjfM" /locus_tag="SF4338" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710048.1" /db_xref="GeneID:1026807" /translation="MARKRKSRNNSKIGHGAISRIGRPNNPFEPRRNRYAQKYLTLAL MGGAAFFVLKGCSDSSDVDNDGDGTFYATVQDCIDDGNNADICARGWNNAKAAFYADV PKNMTQQNCQSKYENCYYDNVEQSWIPVVSGFLLSRVIRKDRDEPFVYNSGGSSFASR PVWRNTSGDYSWRFGSGKKESYSSGGFTTRKASTVSRGGYGRSSSARGHWGG" misc_feature 4516005..4516523 /gene="yjfM" /locus_tag="SF4338" /note="Uncharacterized conserved protein YgiB, UPF0441/DUF1190 family, involved in bioifilm formation [Function unknown]; Region: YgiB; COG5463" /db_xref="CDD:444214" gene 4516529..4517692 /gene="yjfC" /locus_tag="SF4339" /db_xref="GeneID:1027359" CDS 4516529..4517692 /gene="yjfC" /locus_tag="SF4339" /note="Code: E; COG: COG0754" /codon_start=1 /transl_table=11 /product="synthetase/amidase" /protein_id="NP_710049.2" /db_xref="GeneID:1027359" /translation="MLRHNVPVRRDLDQIAANNGFDFHIIDNEIYWDESRAYRFTLRQ IEEQIEKPTAELHQMCLEVVDRAVKDEEILTQLAIPPLYWDVIAESWRARDPSLYGRM DFAWCGNAPVKLLEYNADTPTSLYESAYFQWLWLEDARRSGIIPRDADQYNAIQERLI SRFSELYSRELFYFCCCQDTDEDRSTVLYLQDCAQQAGQESRFIYIEDLGLGVGGVLT DLDDNVIQRAFKLYPLEWMMRDDNGPLLRKRREQWVEPLWKSILSNKGLMPLLWRFFP GHPNLLASWFEGEKSQIAAGESYVRKPIYSREGGNVTIFDGQNNVVDHADGDYADEPM IYQAFQPLPRFGDSYTLIGSWIVDDEACGMGIREDNTLITKDTSRFVPHYIAG" misc_feature 4516529..4517689 /gene="yjfC" /locus_tag="SF4339" /note="Glutathionylspermidine synthase, CHAP domain [Amino acid transport and metabolism]; Region: Gsp; COG0754" /db_xref="CDD:440517" gene 4517758..4519140 /locus_tag="SF4340" /db_xref="GeneID:1027509" CDS 4517758..4519140 /locus_tag="SF4340" /note="Code: I; COG: COG1960" /codon_start=1 /transl_table=11 /product="carnitine operon oxidoreductase" /protein_id="NP_710050.1" /db_xref="GeneID:1027509" /translation="MMEGDTVHWQTHTIFNQPIPLNNSNLYLSDGALCEAVTREGAGW DSDFLASIGQQLGTAESLELGRLANVNPPELLRYDAQGRRLDDVRFHPAWHLLMQALC TNRVHNLAWEEDARSGAFVARAARFMLHAQVEAGSLCPVTMTFAATPLLLQMLPTPFQ DWTTPLLSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVMSNTTRAERLEDGSYRLVG HKWFFSVPQSDAHLVLAQTAGGLSCFFVPRFLPDGQRNAIRLERLKDKLGNRSNASCE VEFQDAIGWLLGQEGEGIRLILKMGGMTRFDCALGSHAMMRRAFSLAIYHAHQRHVFG NPLIQQPLMRHVLSRMALQLEGQTALLFRLARAWDRRADAKEALWARLFTPAAKFVIC KRGMPFVAEAMEVLGGIGYCEESELPRLYREMPVNSIWEGSGGNDSNLLIVFYVQIMP DDLVMQLHRF" misc_feature 4517776..>4519059 /locus_tag="SF4340" /note="isovaleryl CoA dehydrogenase; Provisional; Region: PRK11561" /db_xref="CDD:183199" mobile_element complement(4519060..4519827) /mobile_element_type="insertion sequence:IS1" gene complement(4519075..4519470) /gene="insB" /locus_tag="SF4341" /db_xref="GeneID:1027748" CDS complement(4519075..4519470) /gene="insB" /locus_tag="SF4341" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_710051.1" /db_xref="GeneID:1027748" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVPHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature complement(4519078..4519467) /gene="insB" /locus_tag="SF4341" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4519497..4519772) /gene="insA" /locus_tag="SF4342" /db_xref="GeneID:1027074" CDS complement(4519497..4519772) /gene="insA" /locus_tag="SF4342" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_710052.1" /db_xref="GeneID:1027074" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature complement(<4519500..4519751) /gene="insA" /locus_tag="SF4342" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene complement(4520295..4520597) /gene="yjfN" /locus_tag="SF4343" /db_xref="GeneID:1025462" CDS complement(4520295..4520597) /gene="yjfN" /locus_tag="SF4343" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710053.2" /db_xref="GeneID:1025462" /translation="MGKRKMELTMKQLLASPSLQLVTYPASATAQSAEFASADCVTGL NEIGQISVSNISGDPQDVERIVALKADEQGASWYRIITMYEDQQPDNWRVQAILYA" misc_feature complement(4520301..4520468) /gene="yjfN" /locus_tag="SF4343" /note="YdgH/BhsA/McbA-like domain; Region: YdgH_BhsA-like; pfam07338" /db_xref="CDD:429417" gene complement(4520719..4521147) /gene="yjfO" /locus_tag="SF4344" /db_xref="GeneID:1023510" CDS complement(4520719..4521147) /gene="yjfO" /locus_tag="SF4344" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710054.3" /db_xref="GeneID:1023510" /translation="MWVTLSSRFHSKIAYQVTIREHSPKVKLIRHYTMVSRKRNSVIY RFASLLLVLMLSACSALQGTPQPAPPVTDHPQEIRRDQTQGLQRIGSVSTMVRGSPDD ALAEIRAKAVAAKADYYVVVMVDETIVTGQWYSQAILYRK" misc_feature complement(4520722..4521033) /gene="yjfO" /locus_tag="SF4344" /note="biofilm peroxide resistance protein BsmA; Region: PRK14864" /db_xref="CDD:184866" gene 4521230..4521979 /gene="yjfP" /locus_tag="SF4345" /db_xref="GeneID:1025200" CDS 4521230..4521979 /gene="yjfP" /locus_tag="SF4345" /note="Code: R; COG: COG1073" /codon_start=1 /transl_table=11 /product="esterase" /protein_id="NP_710055.1" /db_xref="GeneID:1025200" /translation="MIEIESRELADIPVLHAYPVGQKDTPLPCVIFYHGFTSSSLVYS YFAVALAQAGLRVIMPDAPDHGSRFSGDEARRLNQFWQILLQSMQEFTTLRAAIAEEN WLLDDRLAVGGASMGAMTALGITARHPTVKCTASMMGSGYFTSLARSLFPPLIPETAA QQNEFNKIVAPLAEWEATNHLEQLGDRPLLLWHGLDDDVVPADESLRLQQALSETGRD KLLTCSWQPGVRHRITPEALDAAVTFFRQHL" misc_feature 4521230..4521976 /gene="yjfP" /locus_tag="SF4345" /note="esterase; Provisional; Region: PRK10566" /db_xref="CDD:182555" gene complement(4521976..4522731) /gene="yjfQ" /locus_tag="SF4346" /db_xref="GeneID:1025874" CDS complement(4521976..4522731) /gene="yjfQ" /locus_tag="SF4346" /note="Code: KG; COG: COG1349" /codon_start=1 /transl_table=11 /product="transcriptional repressor UlaR" /protein_id="NP_710056.2" /db_xref="GeneID:1025874" /translation="MTEAQRHQILLEMLAQLGFVTVEKVVERLGISPATARRDINKLG ESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCG STAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN SLYAGHWMFTSGKGLTAEGLYKTDMLTAMAEQKMLSVVGKLVVLVDSSKIGERAGMLF SRADQIDMLITGKNANPEILQQLEAQGVSILRV" misc_feature complement(4521979..4522731) /gene="yjfQ" /locus_tag="SF4346" /note="HTH-type transcriptional regulator UlaR; Region: PRK13509" /db_xref="CDD:184100" gene complement(4522839..4523909) /gene="yjfR" /locus_tag="SF4347" /db_xref="GeneID:1025412" CDS complement(4522839..4523909) /gene="yjfR" /locus_tag="SF4347" /note="Code: R; COG: COG2220" /codon_start=1 /transl_table=11 /product="L-ascorbate 6-phosphate lactonase" /protein_id="NP_710057.1" /db_xref="GeneID:1025412" /translation="MAMSKVKSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWW LGCTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKQGHQMQRMAGVKKLQPNLRTTPF VLDPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWGVPK ERCIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKT PGGSLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADMLRMGEALNA KVVIPFHHDIWSNFQADPQEIRVLWEIKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEY HYPRGFDDCFTIEPDLPFKSFL" misc_feature complement(4522842..4523903) /gene="yjfR" /locus_tag="SF4347" /note="putative L-ascorbate 6-phosphate lactonase; Provisional; Region: PRK11709" /db_xref="CDD:236958" misc_feature complement(order(4523157..4523159,4523226..4523228, 4523289..4523294,4523538..4523543,4523547..4523549, 4523553..4523555)) /gene="yjfR" /locus_tag="SF4347" /note="putative active site [active]" /db_xref="CDD:293842" gene 4524201..4525655 /gene="sgaT" /locus_tag="SF4348" /db_xref="GeneID:1025118" CDS 4524201..4525655 /gene="sgaT" /locus_tag="SF4348" /note="Code: S; COG: COG3037" /codon_start=1 /transl_table=11 /product="PTS system ascorbate-specific transporter subunit IIC" /protein_id="NP_710058.3" /db_xref="GeneID:1025118" /translation="MHNIPGVRNTRLPLLQEIVMEILYNIFTVFFNQVMTNAPLLLGI VTCLGYILLRKSVSVIIKGTIKTIIGFMLLQAGSGILTSTFKPVVAKMSEVYGINGAI SDTYASMMATIDRMGDAYSWVGYAVLLALALNICYVLLRRITGIRTIMLTGHIMFQQA GLIAVTLFIFGYSMWTTIICTAILVSLYWGITSNMMYKPTQEVTDGCGFSIGHQQQFA SLIAYKVAPFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVMTIFFGAILLSFGIDTVQ AMAGKVHWTVYILQTGFSFAVAIFIITQGVRMFVAELSEAFNGISQRLIPGAVLAIDC AAIYSFAPNAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPMFFSNATIGVFANH FGGWRAALKICLVMGMIEIFGCVWVVKLTGMSAWMGMADWSILAPPMMQGFFSIGIAF MAVIIVIALAYMFFAGRALRAEEDAEKQLAEQSA" misc_feature 4524258..>4525643 /gene="sgaT" /locus_tag="SF4348" /note="PTS ascorbate-specific subunit IIBC; Region: PRK09548" /db_xref="CDD:236559" gene 4525671..4525976 /gene="sgaB" /locus_tag="SF4349" /db_xref="GeneID:1025912" CDS 4525671..4525976 /gene="sgaB" /locus_tag="SF4349" /note="Code: G; COG: COG3414" /codon_start=1 /transl_table=11 /product="PTS system L-ascorbate-specific transporter subunit IIB" /protein_id="NP_710059.2" /db_xref="GeneID:1025912" /translation="MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEY KSELSGADIIIASTHIAGEITVTGNKYVVGVRNMLSPADFGPKLLEVIKAHFPQDVK" misc_feature order(4525695..4525706,4525710..4525718) /gene="sgaB" /locus_tag="SF4349" /note="P-loop; other site" /db_xref="CDD:99905" misc_feature order(4525695..4525697,4525701..4525706,4525713..4525718) /gene="sgaB" /locus_tag="SF4349" /note="active site" /db_xref="CDD:99905" misc_feature 4525695..4525697 /gene="sgaB" /locus_tag="SF4349" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99905" misc_feature 4525719..4525973 /gene="sgaB" /locus_tag="SF4349" /note="PTS ascorbate transporter subunit IIB; Region: PRK10222" /db_xref="CDD:182316" gene 4525986..4526450 /gene="ptxA" /locus_tag="SF4350" /db_xref="GeneID:1024753" CDS 4525986..4526450 /gene="ptxA" /locus_tag="SF4350" /note="Code: GT; COG: COG1762" /codon_start=1 /transl_table=11 /product="PTS system L-ascorbate-specific transporter subunit IIA" /protein_id="NP_710060.1" /db_xref="GeneID:1024753" /translation="MKLHDSLAENKSIRLQAEAETWQDAVKIGVDLLVAADVVEPRYY QAILDAVEQHGPYFVLAPGLAMPHGRPEEGVKKTGFALVTLKKPLEFNHEDNDPVDIL ITMAAVDANTHQEVGIMQIVNLFEDEENFDRLRACRTEQEVLDLIDRTNAAA" misc_feature 4525986..4526447 /gene="ptxA" /locus_tag="SF4350" /note="PTS ascorbate transporter subunit IIA; Region: PRK10372" /db_xref="CDD:182417" misc_feature order(4526136..4526138,4526187..4526189) /gene="ptxA" /locus_tag="SF4350" /note="active site" /db_xref="CDD:238129" misc_feature 4526187..4526189 /gene="ptxA" /locus_tag="SF4350" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238129" gene 4526464..4527114 /gene="ulaD" /locus_tag="SF4351" /db_xref="GeneID:1025414" CDS 4526464..4527114 /gene="ulaD" /locus_tag="SF4351" /note="Code: G; COG: COG0269" /codon_start=1 /transl_table=11 /product="3-keto-L-gulonate-6-phosphate decarboxylase UlaD" /protein_id="NP_710061.2" /db_xref="GeneID:1025414" /translation="MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGV RAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA KEFNGDVQIELTGYWTWEQAQQWRDAGIQQVVYHRSRDAQAAGVAWGEADITAIKRLS DMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAELWG" misc_feature 4526464..4527111 /gene="ulaD" /locus_tag="SF4351" /note="3-dehydro-L-gulonate-6-phosphate decarboxylase; Region: ulaD; PRK13306" /db_xref="CDD:237344" misc_feature order(4526488..4526490,4526494..4526496,4526560..4526562, 4526647..4526649,4526653..4526655,4526869..4526871, 4526968..4526970,4526974..4526976,4527034..4527039) /gene="ulaD" /locus_tag="SF4351" /note="active site" /db_xref="CDD:240077" misc_feature order(4526500..4526502,4526581..4526583,4526590..4526595, 4526662..4526670,4526686..4526688,4526728..4526730, 4526743..4526745,4526806..4526808,4526824..4526826, 4526869..4526871,4526875..4526883) /gene="ulaD" /locus_tag="SF4351" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240077" misc_feature order(4526560..4526562,4526647..4526649) /gene="ulaD" /locus_tag="SF4351" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:240077" gene 4527124..4527978 /gene="sgaU" /locus_tag="SF4352" /db_xref="GeneID:1027385" CDS 4527124..4527978 /gene="sgaU" /locus_tag="SF4352" /note="Code: G; COG: COG3623" /codon_start=1 /transl_table=11 /product="L-xylulose 5-phosphate 3-epimerase" /protein_id="NP_710062.1" /db_xref="GeneID:1027385" /translation="MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETN ERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLGSEDDAVRAQGLEIMRKA IQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYP LMNSISKALGYAHYLNNPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPG VFKNVPFGEGVVDFERCFETLKQSGYCGPYLIEMWSETAEDPAAEVVKACDWVKARMA KAGMVEAA" misc_feature 4527124..4527966 /gene="sgaU" /locus_tag="SF4352" /note="L-ribulose-5-phosphate 3-epimerase; Region: PRK13209" /db_xref="CDD:237307" gene 4527978..4528664 /gene="sgaE" /locus_tag="SF4353" /db_xref="GeneID:1025396" CDS 4527978..4528664 /gene="sgaE" /locus_tag="SF4353" /note="Code: G; COG: COG0235" /codon_start=1 /transl_table=11 /product="L-ribulose-5-phosphate 4-epimerase" /protein_id="NP_710063.2" /db_xref="GeneID:1025396" /translation="MQKLKQQVFEANMDLPRYGLVTFTWGNVSAIDRERGLVVIKPSG VAYETMKADDMVVVDMSGKVVEGEYRPSSDTATHLELYRRYPSLGGIVHTHSTHATAW AQAGLAIPALGTTHADYFFGDIPCTRGLSEEEVQGEYELNTGKVIIETLGNAEPLHTP GIVVYQHGPFAWGKDAHDAVHNAVVMEEVAKMAWIARSINPQLNHIDSYLMNKHFMRK HGPNAYYGQK" misc_feature 4527978..4528661 /gene="sgaE" /locus_tag="SF4353" /note="L-ribulose-5-phosphate 4-epimerase; Reviewed; Region: sgaE; PRK12348" /db_xref="CDD:183460" misc_feature order(4528005..4528007,4528017..4528019,4528041..4528043, 4528113..4528115,4528119..4528124,4528260..4528262, 4528266..4528271,4528284..4528292,4528311..4528313, 4528317..4528322,4528362..4528364,4528473..4528475, 4528506..4528508,4528527..4528529,4528539..4528541, 4528560..4528562,4528620..4528622) /gene="sgaE" /locus_tag="SF4353" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238232" misc_feature order(4528056..4528058,4528104..4528109,4528191..4528199, 4528254..4528256,4528260..4528262,4528476..4528478) /gene="sgaE" /locus_tag="SF4353" /note="active site" /db_xref="CDD:238232" misc_feature order(4528254..4528256,4528260..4528262,4528476..4528478) /gene="sgaE" /locus_tag="SF4353" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238232" gene complement(4528793..4529137) /locus_tag="SF4353a" /db_xref="GeneID:16608374" CDS complement(4528793..4529137) /locus_tag="SF4353a" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="YP_008439297.1" /db_xref="GeneID:16608374" /translation="MIKIKSEDHHRGEHTKSAVEEVSMFSRVLALLAVLLLSANTWAA IEINNHQARNMDDVQSLGVIYINHNFATESEARQALNEETDAQGATYYHVILMREPGS NGNMHASADIYR" misc_feature complement(4528799..4528966) /locus_tag="SF4353a" /note="YdgH/BhsA/McbA-like domain; Region: YdgH_BhsA-like; pfam07338" /db_xref="CDD:429417" gene 4529395..4529790 /gene="rpsF" /locus_tag="SF4354" /db_xref="GeneID:1027388" CDS 4529395..4529790 /gene="rpsF" /locus_tag="SF4354" /note="Code: J; COG: COG0360" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S6" /protein_id="NP_710064.1" /db_xref="GeneID:1027388" /translation="MRHYEIVFMVHPDQSEQVPGMIERYTAAITGAEGKIHRLEDWGR RQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPM VKAKDERRERRDDFANETADDAEAGDSEE" misc_feature 4529395..4529712 /gene="rpsF" /locus_tag="SF4354" /note="Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]; Region: RpsF; COG0360" /db_xref="CDD:440129" gene 4529797..4530111 /locus_tag="SF4353b" /db_xref="GeneID:16608375" CDS 4529797..4530111 /locus_tag="SF4353b" /codon_start=1 /transl_table=11 /product="primosomal replication protein N" /protein_id="YP_008439298.1" /db_xref="GeneID:16608375" /translation="MTNRLVLSGTVCRTPLRKVSPSGIPHCQFVLEHRSVQEEAGFHR QAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS GD" misc_feature 4529797..4530099 /locus_tag="SF4353b" /note="Primosomal replication protein N [Replication, recombination and repair]; Region: PriB; COG2965" /db_xref="CDD:442205" gene 4530116..4530343 /gene="rpsR" /locus_tag="SF4355" /db_xref="GeneID:1025738" CDS 4530116..4530343 /gene="rpsR" /locus_tag="SF4355" /note="Code: J; COG: COG0238" /codon_start=1 /transl_table=11 /product="30S ribosomal protein S18" /protein_id="NP_710065.1" /db_xref="GeneID:1025738" /translation="MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRI TGTRAKYQRQLARAIKRARYLSLLPYTDRHQ" misc_feature 4530122..4530340 /gene="rpsR" /locus_tag="SF4355" /note="Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Region: RpsR; COG0238" /db_xref="CDD:440008" gene 4530385..4530834 /gene="rplI" /locus_tag="SF4356" /db_xref="GeneID:1027510" CDS 4530385..4530834 /gene="rplI" /locus_tag="SF4356" /note="Code: J; COG: COG0359" /codon_start=1 /transl_table=11 /product="50S ribosomal protein L9" /protein_id="NP_710066.1" /db_xref="GeneID:1027510" /translation="MQVILLDKVANLGSLGDQVNVKAGYARNFLVPQGKAVPATKKNI EFFEARRAELEAKLAEVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADA VTAAGVEVAKSEVRLPNGVLRTTGEHEVSFQVHSEVFAKVIVNVVAE" misc_feature 4530385..4530831 /gene="rplI" /locus_tag="SF4356" /note="Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Region: RplI; COG0359" /db_xref="CDD:440128" gene complement(4530909..4531465) /gene="yjfZ" /locus_tag="SF4357" /pseudo /db_xref="GeneID:1026745" misc_feature complement(4530909..4531465) /gene="yjfZ" /locus_tag="SF4357" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790648 (265 aa). BLAST with identity of 97% in 185 aa. This CDS has been truncated. The sequence has been checked and is believed to be correct." /pseudo gene 4531532..4531810 /locus_tag="SF4358" /db_xref="GeneID:1026742" CDS 4531532..4531810 /locus_tag="SF4358" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710067.2" /db_xref="GeneID:1026742" /translation="MSGKRYPEEFKTEAVKQVVDRGYSVASVATRLDITTHSLYAWIK KYGPDSSTNKEQSDAQAEIRRLQKELKRVTDERDILKKAAAYFAKLSD" misc_feature 4531541..4531792 /locus_tag="SF4358" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 4531867..4532448 /locus_tag="SF4359" /db_xref="GeneID:1027485" CDS 4531867..4532448 /locus_tag="SF4359" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710068.1" /db_xref="GeneID:1027485" /translation="MLDVHPSGFYAWLQQPHSQRHQADLRLTGQIKQFWLESGCVYGY RKIHLDLRDSGQQCGVNRVWRLMKRVGIKAQVGYRSPRARKGEASIVSPNRLQRQFNP DAPDERWVTDITYIRTHEGWLYLAVVVDLFSRKIIGWSMQSRMTKDIVLNALLMAVWR RNPEKQVLVHSDQGSQYTSHEWQSFLKSHGLEG" misc_feature <4531870..4532442 /locus_tag="SF4359" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" mobile_element complement(4532446..4533709) /mobile_element_type="insertion sequence:IS600" gene complement(4532489..4533307) /locus_tag="SF4360" /db_xref="GeneID:1027081" CDS complement(4532489..4533307) /locus_tag="SF4360" /note="Code: L; COG: COG2801" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 protein" /protein_id="NP_710069.1" /db_xref="GeneID:1027081" /translation="MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRET YGTRRLQTELAENGIIVGRDRLARLRKELRLRCKQKRKFRATTNPNHNLPGAPNLLNQ TFAPTAPNQVWVEDLTYVATQEGWLYLAGIKHVYTCEIVGYAMGERMTKELTGKALFM ALRSQLPPAGLIHHSDRGSQYCAYDYRVIQEQTGLKTSMSRKGNCYDNAPMESFWGTL KNESLSHYRFNNRDEAISVIREYIEIFYNRQRRHSRLGNISPAAFREKYHQMAA" misc_feature complement(4532516..>4533307) /locus_tag="SF4360" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(4533343..4533645) /locus_tag="SF4361" /db_xref="GeneID:1026943" CDS complement(4533343..4533645) /locus_tag="SF4361" /note="Code: L; COG: COG2963" /codon_start=1 /transl_table=11 /product="insertion sequence element IS600 transposase" /protein_id="NP_710070.1" /db_xref="GeneID:1026943" /translation="MSRKTQRYSKEFKAEAVRTVLENQLSISEGASRLSLPEGTLGQW VTAARKGLGTPGSRTVAELESEILQLRKALNEARLERDILKKATAYFAQESLKNTR" misc_feature complement(4533373..4533645) /locus_tag="SF4361" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 4533710..4534030 /locus_tag="SF4362" /db_xref="GeneID:1025408" CDS 4533710..4534030 /locus_tag="SF4362" /note="Code: S; COG: COG3586" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710071.1" /db_xref="GeneID:1025408" /translation="MLFDHLRDEVMRLDAGITQEVLKLYIAFKAETNFVDVVPQKSRL RLSLNMQFHELVDPKGIAKDVTNVGRWGNGDVEIGFSDLAQLPYIMGLIRQAFEKQME SALV" misc_feature <4533710..4534015 /locus_tag="SF4362" /note="Uncharacterized protein domain, C-terminal to COG1479 DNAse/DNA nickase [General function prediction only]; Region: COG3586" /db_xref="CDD:442805" gene complement(4534077..4534418) /locus_tag="SF4363" /db_xref="GeneID:1025495" CDS complement(4534077..4534418) /locus_tag="SF4363" /codon_start=1 /transl_table=11 /product="endoribonuclease SymE" /protein_id="NP_710072.1" /db_xref="GeneID:1025495" /translation="MTDTHSIAQPLEAEVSPANNRQLTVSYASRYPDYSRIPAITLKG QWLEAAGFATGTAVDVKVMEGCIVLTAQPAAAEESELMQSLRKVCKLSARKQRQVQEF IGVITGKQKVA" misc_feature complement(4534080..4534418) /locus_tag="SF4363" /note="endoribonuclease SymE; Provisional; Region: PRK13605" /db_xref="CDD:237442" gene complement(4534639..4536300) /locus_tag="SF4364" /db_xref="GeneID:1025228" CDS complement(4534639..4536300) /locus_tag="SF4364" /note="Code: L; COG: COG0732" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710073.1" /db_xref="GeneID:1025228" /translation="MSVEKLIVDHMETWTSALQTRSTAGRGSSGKIDLYGIKKLRELI LELAVRGKLVPQDPNDEPASDLLKRIAAEKAELVKQGKIKKQKPLPEISEEEKPFELP EGWEWVHLPDIYCSISESSRKIKSSEILPEGKYPVIEQSQEFISGYCNNECLLIKLNN PVIVFGDHTRNIKFIDFDFVVGADGVKILSPILICERFFFWQLRSFKLDVRGYARHFK VLNSCLFALPPIAEQERIVEKVSSLMSLCDQLEQQSLTSLDAHQQLVETLLGTLTDSQ NTAELAENWARISEHFDTLFTTEASVDALKQTILQLAVMGKLVPQDPNDEPASELLKR IAQEKAQLVKEGKIKKQKPLPPISDEEKPFELPEGWEWCRIGNIVNIKSELVSPKDYL NLYQVAPDIIEKGTGRVISKRTVKESGVKGPNSRFYKGQIVYSKIRPSLSKVFLAEYN GLCSADMYPLDCYINPNYLLKYILSIPFLMQVKKAENRIKMPKLNSDSFYNIIVAIPP YNEQQAIFDKINSIEAVCNGLISYIGIYHKTQLHLADALTDAAIN" misc_feature complement(4535485..4535991) /locus_tag="SF4364" /note="Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR) and similar domains; Region: RMtype1_S_TRD-CR_like; cl38903" /db_xref="CDD:365779" misc_feature complement(order(4535497..4535502,4535506..4535508, 4535581..4535586,4535593..4535595,4535605..4535607, 4535641..4535643,4535647..4535649,4535686..4535691, 4535695..4535700,4535707..4535709)) /locus_tag="SF4364" /note="TRD-CR/TRD-CR interface [polypeptide binding]; other site" /db_xref="CDD:341131" misc_feature complement(4534720..4535184) /locus_tag="SF4364" /note="Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR) and similar domains; Region: RMtype1_S_TRD-CR_like; cl38903" /db_xref="CDD:365779" gene complement(4536300..4537805) /locus_tag="SF4365" /db_xref="GeneID:1025856" CDS complement(4536300..4537805) /locus_tag="SF4365" /note="Code: L; COG: COG0286" /codon_start=1 /transl_table=11 /product="restriction modification enzyme M subunit" /protein_id="NP_710074.1" /db_xref="GeneID:1025856" /translation="MLQKALFFMEYNMSISSVIKSLQDIMRKDAGVDGDAQRLGQLSW LLFLKIFDAQEEALELEQDNYQYPIPQRYLWRSWAANAQGITGDSLLEFVNDDLFPAL KNLTAPIDKNPRGYVVKQAFSDAYNYMKNGTLLRQVINKLNEIDFTSASERHLFGDIY EQILKDLQSAGNAGEFYTPRAVTRFMVDRVDPKLGESIMDPACGTGGFLACAFDHVKN KYVKSVADHQTLQQQIHGVEKKQLPHLLATTNMLLHGIEVPVQIRHDNTLNKPLSSWD EQLDVIVTNPPFGGTEEDGIEKNFPAEMQTRETADLFLQLIVEVLAKNGRAAVVLPDG TLFGEGVKTKIKKLLTEECNLHTIVRLPNGVFNPYTGIKTNLLFFTKGQPTKEIWFYE HQYPAGVKNYSKTKPMKFEEFQAEIDWWGNEADGFASRVENEQAWKVSIDDVIARNFN LDIKNPHQAETVSHDPDELLAQYAKQQAEIQTLRNQLRDILGAALSGKEVN" misc_feature complement(4537380..4537763) /locus_tag="SF4365" /note="HsdM N-terminal domain; Region: HsdM_N; pfam12161" /db_xref="CDD:463478" misc_feature complement(4536414..4537349) /locus_tag="SF4365" /note="N-6 DNA Methylase; Region: N6_Mtase; pfam02384" /db_xref="CDD:426749" gene complement(4537836..4540268) /locus_tag="SF4366" /db_xref="GeneID:1025113" CDS complement(4537836..4540268) /locus_tag="SF4366" /note="Code: L; COG: COG0610" /codon_start=1 /transl_table=11 /product="Type I restriction enzyme EcoAI R protein" /protein_id="NP_710075.1" /db_xref="GeneID:1025113" /translation="MAELNLSNLTEADIITKCVMPAILNAGWDNTTQIRQEVKLRDGK VIVRGKVAARRTVKSADIVLYHKPGIPLAVIEAKANKHEIGKGMQQGIEYARLLDVPF VFATNGDGFIFRDATAAEGECLEKQITLDDFPSPAELWQKFCLWKGYTQAQLPVITQD YYDDGSGKSPRYYQLQAINKTIEAVSNGQNRVLLVMATGTGKTYTAFQIIWRLWKSKN KKRILFLADRNILVDQTKNNDFQPFGTAMTKVSGRTIDPAYEIHLALYQAITGPEEDQ KAFKQVAPDFFDLIVIDECHRGSASEDSAWREILDYFSSATQIGLTATPKETHEVSST DYFGDPVYVYSLKEGIEDGFLAPYKVVRVDIDVDLQGWRPTKGQTDLNGEVIDDRIYN QKDFDRTMVIDERTELVARTITDYLKRTNPMDKTIVFCNDIDHAERMRRALVNLNPQQ VKKNDKYVMKITGDDEIGKAQLDNFINPKKPYPVIATTSELMTTGVDAKTCKLVVLDQ NIQSMTKFKQIIGRGTRIDERYGKLWFTILDFKKATELFADERFDGIPEKVMDTTPED IADPESDFEEKLEEISEHDDEQVTGVDEPPAPPYQVTDTDDVGPFPEEDEKKIRKFHV NGVAVGVIAQRVQYYDADGKLVTESFKDYTRKTLLKEYASLDDFTRKWQDADRKEAII HELEQQGIIWEVLAEEVGKDLDPFDMLCHVVYGQPPLTRKERAENVHKRNYFTKYSEA AQAVLDNLLDKYADAGVQEIESIQVLKLKPFDSMGTLPEIIKTGFGDRNGYNQALSEL ENEIYQLPPRSA" misc_feature complement(4537857..4540247) /locus_tag="SF4366" /note="Type I site-specific restriction endonuclease, part of a restriction-modification system [Defense mechanisms]; Region: HsdR; COG4096" /db_xref="CDD:443272" mobile_element 4540510..4541277 /mobile_element_type="insertion sequence:IS1" gene 4540565..4540840 /gene="insA" /locus_tag="SF4367" /db_xref="GeneID:1026632" CDS 4540565..4540840 /gene="insA" /locus_tag="SF4367" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_710076.1" /db_xref="GeneID:1026632" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGTHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 4540586..>4540837 /gene="insA" /locus_tag="SF4367" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4540867..4541262 /gene="insB" /locus_tag="SF4368" /db_xref="GeneID:1027390" CDS 4540867..4541262 /gene="insB" /locus_tag="SF4368" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_710077.1" /db_xref="GeneID:1027390" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LGRKSLSFSKSVELHDKAIGHYLNIKHYQ" misc_feature 4540870..4541259 /gene="insB" /locus_tag="SF4368" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene complement(4541197..4542099) /locus_tag="SF4369" /db_xref="GeneID:1027372" CDS complement(4541197..4542099) /locus_tag="SF4369" /codon_start=1 /transl_table=11 /product="L-lactate permease" /protein_id="NP_710078.1" /db_xref="GeneID:1027372" /translation="MFVYKISVKTGQFDIIRSSILSITPDQRLQMLIVGFCFGAFLEG AAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNTAPVAFGAMGIPILVAGQVTGIDSF EIGQMVGRQLPFMTIIVLFWIMAIMDGWRGIKETWPAVVVAGGSFAIAQYLSSNFIGP ELPDIISSLVSLLCLTLFLKRWQPVRVFRFGDLGASQVDMTLAHTGYTAGQVLRAWTP FLFLTATVTLWSIPPFKALFASGGALYEWVINIPVPYLNKLVARMPPVVSEATAYAGN DSNLLIVFYVQIMPDGLVMQLHRF" misc_feature complement(<4541278..4542099) /locus_tag="SF4369" /note="L-lactate permease; Region: Lactate_perm; cl00701" /db_xref="CDD:445056" gene complement(4542108..4542962) /gene="yjiA" /locus_tag="SF4370" /db_xref="GeneID:1023772" CDS complement(4542108..4542962) /gene="yjiA" /locus_tag="SF4370" /note="Code: R; COG: COG0523" /codon_start=1 /transl_table=11 /product="GTP-binding protein YjiA" /protein_id="NP_710079.2" /db_xref="GeneID:1023772" /translation="MIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALL DLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEILCQLYLLDGVIALVDAVHAD EQMNQFTIAQSQVGYADRILLTKTDVAGEAEKLRERLARINARAPVYTVTHGDIDLGL LFNTNGFMLEENVVSTKPRFHFIADKQNDISSIVVELDYPVDISEVSRVMENLLLESA DKLLRYKGMLWIDGEPNRLLFQGVQRLYSADWDRPWGDEKPHSTMVFIGIQLPEEEIR AAFAGLRK" misc_feature complement(4542111..4542962) /gene="yjiA" /locus_tag="SF4370" /note="putative GTP-binding protein YjiA; Provisional; Region: PRK11537" /db_xref="CDD:183183" gene complement(4543075..4543278) /gene="yjiX" /locus_tag="SF4371" /db_xref="GeneID:1026700" CDS complement(4543075..4543278) /gene="yjiX" /locus_tag="SF4371" /note="Code: S; COG: COG2879" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710080.1" /db_xref="GeneID:1026700" /translation="MFGNLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMSY EEFFRERQNARYGGDGKGGMRCC" misc_feature complement(4543078..4543278) /gene="yjiX" /locus_tag="SF4371" /note="Uncharacterized short protein YbdD, DUF466 family [Function unknown]; Region: YbdD; COG2879" /db_xref="CDD:442126" gene complement(4543328..4545493) /gene="yjiY" /locus_tag="SF4372" /db_xref="GeneID:1027497" CDS complement(4543328..4545493) /gene="yjiY" /locus_tag="SF4372" /note="Code: T; COG: COG1966" /codon_start=1 /transl_table=11 /product="carbon starvation protein" /protein_id="NP_710081.1" /db_xref="GeneID:1027497" /translation="MPGFTMDTKKLFKHIPWVILGIIGAFCLAVVALRRGEHVSALWI VVASVSVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAA IAGAGPLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKE EMGPVPGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMR FIRPGRVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSAL LPVWLILAPRDYLATFLKIGVIVGLALGIVVLNPELKMPAMTQYIDGTGPLWKGALFP FLFITIACGAVSGFHALISSGTTPKLLANETDARFIGYGAMLMESFVAIMALVAASII EPGLYFAMNTPPAGLGITMPNLHEMGGENAPIIMAQLKDVTAHAAATVSSWGFVISPE QILQTAKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALFILT ALDAGTRSGRFMLQDLLGNFIPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGG VKSLWPLFGISNQMLAAVALVLGTVVLIKMKRTQYIWVTVVPAVWLLICTTWALGLKL FSTNPQMEGFFYMASQYKEKIANGTDLTAQQIANMNHIVVNNYTNAGLSILFLIVVYS IIFYGFKTWLAVRNSDKRTDKETPYVPIPEGGVKISSHH" misc_feature complement(4543331..4545457) /gene="yjiY" /locus_tag="SF4372" /note="carbon starvation protein CstA; Region: PRK15015" /db_xref="CDD:184976" gene complement(4545871..4546383) /gene="hpaC" /locus_tag="SF4373" /db_xref="GeneID:1026806" CDS complement(4545871..4546383) /gene="hpaC" /locus_tag="SF4373" /note="Code: R; COG: COG1853" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate 3-monooxygenase reductase subunit" /protein_id="NP_710082.1" /db_xref="GeneID:1026806" /translation="MQLDEQRLRFHDAMASLSAAVNIITTEGDAGQCGITATAVCSVT DTPPSLMVCINANSAMNPVFQGNGKLCVNVLNHEQELMARHFAGMTGMAMEERFSLSC WQKGPLAQPVLKGSLASLEGEIRDVQAIGTHLVYLVEIKNIILSAEGHGLIYFKRRFH PVMLEMEAAI" misc_feature complement(4545874..4546383) /gene="hpaC" /locus_tag="SF4373" /note="4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional; Region: hpaC; PRK15486" /db_xref="CDD:185383" gene complement(4546401..4547959) /locus_tag="SF4374" /pseudogene="unknown" /db_xref="GeneID:1025391" gene complement(4548212..4548979) /locus_tag="SF4376" /db_xref="GeneID:1027394" CDS complement(4548212..4548979) /locus_tag="SF4376" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710085.2" /db_xref="GeneID:1027394" /translation="MATALIIGNKTWLIDAGYGASLQLVKNNIPLRQIDNILLTHLHS DHILDYPSVLMNAWASGLQDKTIHVFGPPGTRAMTAASWQVFDRDITLRMEEEGKPDP RKLVTAQDVGEGVVYKDDTVTVTALKVPHSPFPDGEAFAYRFDTQGKRIVFSGDTSYF PPLATFSEGADILVHEAVHEPSVAKLADSIGNGKTLAKAIASHHTTIEDVGKIANEAK VKKLILSHLVPITVPDETWKQEAQKTIQVLSSLVMKI" misc_feature complement(4548455..4548979) /locus_tag="SF4376" /note="Pseudoalteromonas carrageenovora arylsulfatase AtsA and related proteins; MBL-fold metallo-hydrolase domain; Region: arylsulfatase_AtsA-like_MBL-fold; cd07719" /db_xref="CDD:293805" misc_feature complement(order(4548455..4548457,4548512..4548514, 4548584..4548589,4548842..4548847,4548851..4548853, 4548857..4548859)) /locus_tag="SF4376" /note="putative active site [active]" /db_xref="CDD:293805" gene complement(4549150..4550040) /gene="hpaA" /locus_tag="SF4377" /db_xref="GeneID:1025074" CDS complement(4549150..4550040) /gene="hpaA" /locus_tag="SF4377" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism regulatory protein HpaA" /protein_id="NP_710086.2" /db_xref="GeneID:1025074" /translation="MSSEAIFEHGYENIDLVREYDARYAGEDVHYETFARLANFFGRD MRPHWHDRYFQLHYLVTGRITLQLDEHFYSVRAPLFVLTPPSVPHTFFTDPDSDGHVL TVRQELIWPLVEKLWPGSGDAAMLQGICLSLEGMEHTLAALNHYWPIISLEFQQNKQG REILLQSLAQSIFTILLREAPPNDISTCSVRGEMCLFQKFNRLIDENYRQHLMVPEYA TMLGMSESRLTELCRRFANQSPKRLIFERVSREARRLLLYSEQSINQIALDLGYKDPA YFARFFNRMMGCSPTQFRGR" misc_feature complement(4549153..4550013) /gene="hpaA" /locus_tag="SF4377" /note="4-hydroxyphenylacetate catabolism regulatory protein HpaA; Region: HpaA; TIGR02297" /db_xref="CDD:131350" gene complement(4550050..4551405) /gene="hpaX" /locus_tag="SF4378" /db_xref="GeneID:1027373" CDS complement(4550050..4551405) /gene="hpaX" /locus_tag="SF4378" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate permease" /protein_id="NP_710087.2" /db_xref="GeneID:1027373" /translation="MTTSTLQYKDNKTVEIEHRVINKLFRRLIIFLFILFVFSFLDRI NIGFAGLTMGKDLGLTSTMFGLAATLFYVTYAMCGIPSNMMLAKIGARRWIAGIMVVW GIASTCTMFATSPETLYLLRMLVGIAEAGFLPGILVYLTWWFPAYHRARANALFMIAM PVTMMLGLILSGYILALDGLWNLKGWQWLFLLEGLPSVILGVVTWFYLNDTPDQATWL DENEKQALKTMILREQESAFAHASVPRSTLREVLTPAIMLYTLAYFCLTNTLSAINIW TPQILQSFNTGSSNIMIGLLAAIPQFCTIFGMIWWSRRSDRLKERKKHTILPYLFAAA GWLLASATDHSLIQLSSIIMASMGSFTAMTIFWTTPDQVISLQSRAVAMAVINAVGNV GSAVSPLLIGILKDATGSFSSGLWFVAGLLVLGALVMTRIPMGSREHSLSSELIAPKP Q" misc_feature complement(4550134..4551348) /gene="hpaX" /locus_tag="SF4378" /note="4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332" /db_xref="CDD:131385" gene complement(4551427..4552230) /gene="hpaI" /locus_tag="SF4379" /db_xref="GeneID:1023444" CDS complement(4551427..4552230) /gene="hpaI" /locus_tag="SF4379" /note="Code: G; COG: COG0469" /codon_start=1 /transl_table=11 /product="4-hydroxy-2-oxo-heptane-1,7-dioate aldolase" /protein_id="NP_710088.1" /db_xref="GeneID:1023444" /translation="MENSFKAALKAGRPQIGLWLGLSSSYSAELLAGPGFDWLLIDGE HAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAR KAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQI LDVEGVDGVFIGPADLSADMGYAGNPQHPEVQAAIEQAIVQIREAGKAPGILIANEQL AKRYLELGALFVAVGVDTTLLARAAEALAARFGNSSSISMAKQNNNSVY" misc_feature complement(4551520..4552224) /gene="hpaI" /locus_tag="SF4379" /note="Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their...; Region: malate_synt; cl21481" /db_xref="CDD:451263" gene complement(4552241..4553044) /gene="hpaH" /locus_tag="SF4380" /db_xref="GeneID:1027507" CDS complement(4552241..4553044) /gene="hpaH" /locus_tag="SF4380" /note="Code: Q; COG: COG0179" /codon_start=1 /transl_table=11 /product="2-oxo-hepta-3-ene-1,7-dioic acid hydratase" /protein_id="NP_710089.2" /db_xref="GeneID:1027507" /translation="MFDKHTHTLIAQRLDQAEKQREQIRAISLDYPEITIEDAYAVQR EWVRLKIAESRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGSDIPTDRFIV PRIEVELAFVLAKPLRGPNCTLFDVYNATDYVIPALELIDARCHNIDPETQRPRKVFD TISDNAANAGVILGGRPIKPDELDLRWISALMYRNGVIEETGVAAGVLNHPANGVAWL ANKLAPYDVQLETGQIILGGSFTLPVPARKGDTFHVDYGNMGSISCRFV" misc_feature complement(4552244..4553044) /gene="hpaH" /locus_tag="SF4380" /note="Protein of unknown function (DUF2848); Region: DUF2848; cl11421" /db_xref="CDD:472178" gene complement(4553112..4553492) /gene="hpaF" /locus_tag="SF4381" /db_xref="GeneID:1026562" CDS complement(4553112..4553492) /gene="hpaF" /locus_tag="SF4381" /note="Code: E; COG: COG3232" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconate delta-isomerase" /protein_id="NP_710090.1" /db_xref="GeneID:1026562" /translation="MPHFIVECTENIREEARLPELFASVNTALAATGIFPLGGIRSRA HWIDTWQMADGKHDYAFVHMTLKIGSGRSLESRQEVGEMLFDLIKTHFASLMESRYLA LSFEIAELHPTLNFKQNNVHALFK" misc_feature complement(4553115..4553492) /gene="hpaF" /locus_tag="SF4381" /note="5-carboxymethyl-2-hydroxymuconate Delta-isomerase; Region: PRK15031" /db_xref="CDD:184991" misc_feature complement(order(4553277..4553279,4553286..4553288, 4553370..4553372,4553376..4553378,4553487..4553489)) /gene="hpaF" /locus_tag="SF4381" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:238324" misc_feature complement(order(4553151..4553153,4553169..4553192, 4553226..4553228,4553238..4553240,4553259..4553264, 4553292..4553294,4553304..4553306,4553316..4553318, 4553334..4553375,4553379..4553384,4553415..4553417, 4553424..4553426,4553472..4553474,4553484..4553486)) /gene="hpaF" /locus_tag="SF4381" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238324" gene complement(4553502..4554353) /gene="hpaD" /locus_tag="SF4382" /db_xref="GeneID:1023475" CDS complement(4553502..4554353) /gene="hpaD" /locus_tag="SF4382" /note="Code: S; COG: COG3384" /codon_start=1 /transl_table=11 /product="3,4-dihydroxyphenylacetate 2,3-dioxygenase" /protein_id="NP_710091.1" /db_xref="GeneID:1023475" /translation="MGKLALAAKITHVPSMYLSELPGKNHGCRQGAIDGHKEISKRCR EMGVDTIIVFDTHWLVNSAYHINCADHFEGVYTSNELPHFIRDMTYNYEGNPELGQLI AEEALKLGVRAKAHNIPSLKLEYGTLVPMRYMNEDKHFKVVSISAFCTVHDFADSRKL GEAILKAIEQYDGTVAVLASGSLSHRFIDDQRAEEGMNSYTREFDRQMDERVVKLWRE GQFKEFCNMLPEYADYCYGEGNMHDTVMLLGMLGWDKYDGKVEFITELFPSSGTGQVN AVFPLPA" misc_feature complement(4553511..4554353) /gene="hpaD" /locus_tag="SF4382" /note="3,4-dihydroxyphenylacetate 2,3-dioxygenase; Region: HpaD_Fe; TIGR02298" /db_xref="CDD:131351" misc_feature complement(order(4553538..4553543,4553634..4553636, 4553799..4553801,4553979..4553981,4554183..4554185, 4554312..4554320)) /gene="hpaD" /locus_tag="SF4382" /note="putative active site [active]" /db_xref="CDD:153382" misc_feature complement(order(4554183..4554185,4554318..4554320)) /gene="hpaD" /locus_tag="SF4382" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:153382" gene complement(4554355..4555821) /gene="hpaE" /locus_tag="SF4383" /db_xref="GeneID:1025220" CDS complement(4554355..4555821) /gene="hpaE" /locus_tag="SF4383" /note="Code: C; COG: COG1012" /codon_start=1 /transl_table=11 /product="5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase" /protein_id="NP_710092.1" /db_xref="GeneID:1025220" /translation="MKKVNHWINGKNVAGNDYFQTTNPATGEVLADVASGGEAEINQA VAAAKEAFPKWADLPMKERARLMRRLGDLIDQNVPEIAAMETADTGLPIHQTKNVLIP RASHNFEFFAEVCQQMNGKTYPVDDKMLNYTLVQPVGVCALASPWNVPFMTATWKVAP CLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRHHDVR AVSFTGGTATGRNIMKNAGLKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGE RCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPNDPNTQVRALISQQHWEKVSGYIR LGIEEGATLLAGGPDKPSDLPAHLKGGNFLRPTVLADVDNRMRVAQEEIFGPVACLLP FKDEAEGLRLANDVEYGLASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQPFGG VKASGTGREGGEYSFEVFAEMKNVCISMGDHPIPKWGV" misc_feature complement(4554394..4555761) /gene="hpaE" /locus_tag="SF4383" /note="Human aldehyde dehydrogenase family 8 member A1-like; Region: ALDH_F8_HMSADH; cd07093" /db_xref="CDD:143412" misc_feature complement(order(4554478..4554480,4554670..4554672, 4554676..4554678,4554988..4554990,4555087..4555092, 4555129..4555131,4555138..4555140,4555147..4555155, 4555195..4555200,4555210..4555212,4555300..4555305, 4555309..4555311,4555363..4555365,4555381..4555389)) /gene="hpaE" /locus_tag="SF4383" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143412" misc_feature complement(order(4554988..4554990,4554997..4554999, 4555090..4555092,4555378..4555380)) /gene="hpaE" /locus_tag="SF4383" /note="catalytic residues [active]" /db_xref="CDD:143412" gene complement(4555818..4557107) /gene="hpaG" /locus_tag="SF4384" /db_xref="GeneID:1026905" CDS complement(4555818..4557107) /gene="hpaG" /locus_tag="SF4384" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase" /protein_id="NP_710093.2" /db_xref="GeneID:1026905" /translation="MKGTIFAVALNHRSQLDAWQEAFQQSPYKAPPKTAVWFIKPRNT VIGCGEPIPFPQGEKVLSGATVALIVGKTATKVREEDAAEYIAGYALDNDVSLPEESF YRPAIKAKCRDGFCPIGETVALSNVDNLTIYTEINGRPADHWNTADLQRNAAQLLSAL SEFATLNPGDAILLGTPQARVEIQPSDRVRVLAEGFPPLENPVVDEREVTTRKSFPTL PHPHGTLFALGLNYADHASELEFKPPEEPLVFLKAPNTLTGDNQTSVRPNNIEYMHYE AELVVVIGKQARNVSEADAMDYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPML STIVPKEAIPDPHNLTLRTFVNGELRQQGTTADLIFSVPFLIAYLSEFMTLNPGDMIA TGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSEETAK" misc_feature complement(4555821..4557107) /gene="hpaG" /locus_tag="SF4384" /note="4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional; Region: PRK15203" /db_xref="CDD:185125" gene 4557379..4557825 /gene="hpcR" /locus_tag="SF4385" /db_xref="GeneID:1025524" CDS 4557379..4557825 /gene="hpcR" /locus_tag="SF4385" /note="Code: K; COG: COG1846" /codon_start=1 /transl_table=11 /product="4HPA-hydroxylase operon regulator" /protein_id="NP_710094.1" /db_xref="GeneID:1025524" /translation="MHDSLTIALLQAREAAMSYFRPIVKRHNLTEQQWRIVRILAESP SMDFHDLAYRACILRPSLTGILTRMERDGLVLRLKPINDQRKLYISLTKEGQALYNRA QTQIEEAYRQIEAQFTAEKMQQLTHLLEEFIALGNSRQEDIPGDNE" misc_feature 4557388..4557741 /gene="hpcR" /locus_tag="SF4385" /note="homoprotocatechuate degradation operon regulator, HpaR; Region: HpaR; TIGR02337" /db_xref="CDD:188209" gene 4557944..4559608 /gene="tsr" /locus_tag="SF4386" /db_xref="GeneID:1027355" CDS 4557944..4559608 /gene="tsr" /locus_tag="SF4386" /note="Code: N; COG: COG0840" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein I" /protein_id="NP_710095.1" /db_xref="GeneID:1027355" /translation="MLKRIKIVTSLLLVLAVFGLLQLTSGGLFFNALKNDKENFTVLQ TIRQQQPTLNGSWVALLQTRNTLNRAGIRYMMDQNNIGSGSTVAELMQSASISLKQAE KNWADYEALPRDPRQSTAAAAEIKRNYDIYHNALAELIQLLGAGKINEFFDQPTQGYQ DGFEKQYVAYMEQNDRLYDIAVSDNNASYSQAMWILVGVMIVVLAVIFAVWFGIKASL VAPMNRLIDSIRHIAGGDLVKPIEVDGSNEMGQLAESLRHMQGELMRTVGDVRNGANA IYSGASEIATGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSAS ETAQRGGKVVDNVVQTMRDISTSSQKIADIISVIDGITFQTNILALNAAVEAARAGEQ GRGFAVVAGEVRNLAQRSAQAVREIKSLIEDSVGKVDVGSTLVESAGETMAEIVSAVT RVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNAALVEESAAAAAALEEQASRL TEAVAVFRIQQQQQQQRETSAVVKTVTPATPRKMAVADSGENWETF" misc_feature 4557944..4559605 /gene="tsr" /locus_tag="SF4386" /note="methyl-accepting chemotaxis protein; Region: PRK15041" /db_xref="CDD:185001" misc_feature order(4558853..4558858,4558865..4558870,4558877..4558879, 4558886..4558891,4558895..4558900,4558907..4558909, 4558916..4558921,4558928..4558930,4558937..4558942, 4558949..4558954,4558961..4558963,4558970..4558975, 4558979..4558984,4558994..4558996,4559000..4559005, 4559012..4559014,4559021..4559026,4559033..4559038, 4559045..4559047,4559054..4559056,4559063..4559068, 4559075..4559077,4559087..4559089,4559096..4559098, 4559117..4559119,4559129..4559131,4559138..4559140, 4559147..4559152,4559159..4559161,4559168..4559173, 4559180..4559185,4559189..4559194,4559201..4559206, 4559243..4559248,4559255..4559257,4559264..4559269, 4559276..4559278,4559285..4559290,4559294..4559299, 4559306..4559311,4559318..4559320,4559327..4559332, 4559339..4559341,4559348..4559353,4559357..4559362, 4559369..4559374,4559378..4559383,4559390..4559392, 4559399..4559404) /gene="tsr" /locus_tag="SF4386" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature 4559063..4559164 /gene="tsr" /locus_tag="SF4386" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" gene complement(4559657..4561018) /gene="yjiZ" /locus_tag="SF4387" /db_xref="GeneID:1026774" CDS complement(4559657..4561018) /gene="yjiZ" /locus_tag="SF4387" /note="Code: GEPR; COG: COG0477" /codon_start=1 /transl_table=11 /product="transporter" /protein_id="NP_710096.1" /db_xref="GeneID:1026774" /translation="MEKENITLDPRSSFTPSSSADIPVPPDGLVQRSTRIKRIQTTAM LLLFFAAVINYLDRSSLSVANLTIREELGLSATEIGALLSVFSLAYGIAQLPCGPLLD RKGPRLMLGLGMFFWSLFQAMSGMVHSFTQFVLVRIGMGIGEAPMNPCGVKVINDWFN IKERGRPMGFFNAASTIGVAVSPPILAAMMLVMGWRGMFITIGVLGIFLAIGWYMLYR NREHVELTAVEQAYLNAGSVNARRDPLNFAEWRSLFRNRTMWGMMLGFSGINYTAWLY LAWLPGYLQTAYNLDLKSTGLMAAIPFLFGAAGMLVNGYVTDWLVKGGMAPIKSRKIC IITGMFCSAAFTLIVPQATTSMMAVLLIGMALFCIHFAGTSCWGLIHVAVASRMTASV GSIQNFASFICASFAPIITGFIVDTTHSFRLALIICGCVTAAGALAYIFLVRQPINDP RKD" misc_feature complement(4559693..4560889) /gene="yjiZ" /locus_tag="SF4387" /note="Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily; Region: MFS_ExuT_GudP_like; cd17319" /db_xref="CDD:340877" misc_feature complement(order(4559807..4559809,4559816..4559821, 4559828..4559833,4559840..4559842,4559888..4559890, 4559900..4559902,4559912..4559917,4560089..4560091, 4560101..4560103,4560185..4560187,4560194..4560202, 4560209..4560214,4560221..4560223,4560482..4560484, 4560491..4560496,4560503..4560505,4560563..4560565, 4560572..4560580,4560584..4560589,4560737..4560739, 4560833..4560835,4560842..4560847,4560854..4560859)) /gene="yjiZ" /locus_tag="SF4387" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340877" gene complement(4561233..4562039) /gene="yjjM" /locus_tag="SF4388" /db_xref="GeneID:1025303" CDS complement(4561233..4562039) /gene="yjjM" /locus_tag="SF4388" /note="Code: K; COG: COG1802" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710097.2" /db_xref="GeneID:1025303" /translation="MYNISRTTVRHILSQLRECGVLTQVGNDYVIARKPDHDDGFACT TASMSEQNKVFEQAFFTMINQRQLRPRETFSELQLARAAGVSPVVVREYLLKFGRYNL IQSEKRGQWSMKQFDQSYAEQLFELREMLETHSLQHFLNLPDHDPRWLQAKTMLERHR LLRDNIGNSFRMFSQLDRDFHSLLLSAADNIFFDQSLEIISVIFHFHYQWDESDLKQR NIIAVDEHMTILSALICRSDLDATLALRNHLNSAKQSMIRSINENTRYAH" misc_feature complement(4561245..4561871) /gene="yjjM" /locus_tag="SF4388" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: GntR; COG1802" /db_xref="CDD:441407" gene 4562272..4563308 /gene="yjjN" /locus_tag="SF4389" /pseudo /db_xref="GeneID:1025369" misc_feature 4562272..4563308 /gene="yjjN" /locus_tag="SF4389" /note="Similar to Escherichia coli K12 oxidoreductase gi: 1790819 (346 aa). BLAST with identity of 98% in 346 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(4563446..4565698) /gene="mdoB" /locus_tag="SF4390" /db_xref="GeneID:1025058" CDS complement(4563446..4565698) /gene="mdoB" /locus_tag="SF4390" /note="Code: M; COG: COG1368" /codon_start=1 /transl_table=11 /product="phosphoglycerol transferase I" /protein_id="NP_710098.4" /db_xref="GeneID:1025058" /translation="MLIYAWKAGRNTWWFAATLTVLGLFVVLNITLFASDYFTGDGIN DAVLYTLTNSLTGAGVSKYILPGIGIVLGLTAVFGALGWILRRRRHHPHHFGYSLLAL LLALGSVDASPAFRQITELVKSQSRDGDPDFAAYYKEPSKTIPDPKLNLVYIYGESLE RTYFDNEAFPDLTPELGALKNEGLDFSHTQQLPGTDYTIAGMVASQCGIPLFAPFEGN ASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGSEELK SVVADPHYRNDWGFYDDTVLDEAWKKFEELSRSGQRFSLFTLTVDTHHPDGFISRTCN RKKYDFDGKPNQSFSAVSCSQENIATFINKIKASPWFKDTVIVVSSDHLAMNNTAWKY LNKQDRNNLFFVIRGDKPQQKTLAVKRNTMDNGATVLDILGGDNYLGLGRSSLSGQSM SEIFLNIKEKTLAWKPDIIRLWKFPKEMKEFTIDQQKNMIAFSGSHFRLPLLLRVSDK RVEPLPESEYSAPLRFQLADFAPRDNFVWVDSCYKMAQLWAPELALSTDWCVSQGQLG GQQIVQHVDKTTWKSKTAFKDTVIDMARYKGNVDTLKIVDNDIRYKADSFIFNVAGAP EEVKQFSGISRPESWGRWSNAQLGDEVKIEYKHPLPKKFDLVITAKAYGNNASRPIPV RVGNEEQTLVLGNEVTTTTLHFDNPTDADTLVIVPPEPVSTNEGNILGHSPRKLGIGM VEIKVVEREG" misc_feature complement(4563452..4565695) /gene="mdoB" /locus_tag="SF4390" /note="phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase; Region: PRK03776" /db_xref="CDD:179648" misc_feature complement(order(4564553..4564558,4564730..4564732, 4565105..4565107,4565228..4565230)) /gene="mdoB" /locus_tag="SF4390" /note="putative active site [active]" /db_xref="CDD:293739" misc_feature complement(order(4564553..4564555,4564730..4564732, 4565105..4565107,4565228..4565230)) /gene="mdoB" /locus_tag="SF4390" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:293739" misc_feature complement(order(4564922..4564924,4564931..4564942, 4564946..4564948)) /gene="mdoB" /locus_tag="SF4390" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:293739" gene complement(4565991..4566488) /gene="yjjA" /locus_tag="SF4391" /db_xref="GeneID:1027611" CDS complement(4565991..4566488) /gene="yjjA" /locus_tag="SF4391" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710099.1" /db_xref="GeneID:1027611" /translation="MMMKTIKHLLCCAIAASALISTGVHAASWKDALSSAASELGNQN STTQEGGWSLASLTNLLSSGNQALSADNMNNAAGILQYCAKQKLASVTDAENIKNQVL EKLGLNSEEQKEDTNYLDGIQGLLKTKDGQQLNLDNIGTTPLAEKVKTKACDLVLKQG LNFIS" misc_feature complement(4565997..4566485) /gene="yjjA" /locus_tag="SF4391" /note="hypothetical protein; Provisional; Region: PRK11667" /db_xref="CDD:236951" gene complement(4566534..4567271) /gene="dnaC" /locus_tag="SF4392" /db_xref="GeneID:1026688" CDS complement(4566534..4567271) /gene="dnaC" /locus_tag="SF4392" /note="Code: L; COG: COG1484" /codon_start=1 /transl_table=11 /product="DNA replication protein DnaC" /protein_id="NP_710100.1" /db_xref="GeneID:1026688" /translation="MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAAL ERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASF IFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDL SNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVM DRMRLGNSLWVIFNWDSYRSRVTGKEY" misc_feature complement(4566540..4567271) /gene="dnaC" /locus_tag="SF4392" /note="DNA replication protein DnaC; Validated; Region: PRK07952" /db_xref="CDD:181180" misc_feature complement(4566933..4566956) /gene="dnaC" /locus_tag="SF4392" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(4566765..4566767,4566930..4566953)) /gene="dnaC" /locus_tag="SF4392" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(4566762..4566779) /gene="dnaC" /locus_tag="SF4392" /note="Walker B motif; other site" /db_xref="CDD:99707" gene complement(4567274..4567813) /gene="dnaT" /locus_tag="SF4393" /db_xref="GeneID:1026738" CDS complement(4567274..4567813) /gene="dnaT" /locus_tag="SF4393" /codon_start=1 /transl_table=11 /product="primosomal protein DnaI" /protein_id="NP_710101.2" /db_xref="GeneID:1026738" /translation="MSSRVLTPDVVGIDALVHDHQTVLAKAEGGVVAVFANNAPAFYA VTPARLAELLALEEKLARPGSDVALDDQLYQEPQAAPVAVPMGKFAMYPDWQPDADFI RLAALWGVALREPVTTEELASFIAYWQAEGKVFHHVQWQQKLARSLQIGRASNGGLPK RDVNTVSEPDSQIPPGFRG" misc_feature complement(4567277..4567813) /gene="dnaT" /locus_tag="SF4393" /note="primosomal protein DnaT; Region: PRK02854" /db_xref="CDD:179484" gene complement(4567920..4568408) /gene="yjjB" /locus_tag="SF4394" /db_xref="GeneID:1023677" CDS complement(4567920..4568408) /gene="yjjB" /locus_tag="SF4394" /note="Code: S; COG: COG3610" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710102.5" /db_xref="GeneID:1023677" /translation="MGATRMGVIEFLLALAQDMILAAIPAVGFAMVFNVPVRALRWCA LLGSIGHGSRMILMTSGLNIEWSTFMASMLVGTIGIQWSRWYLAHPKVFTVAAVIPMF PGISAYTAMISSVKISQLGYSEPLMITLLTNFLTASSIVGALSIGLSIPRLWLYRKRP RV" misc_feature complement(4567923..4568393) /gene="yjjB" /locus_tag="SF4394" /note="threonine/serine exporter; Region: PRK09917" /db_xref="CDD:182143" gene complement(4568384..4569217) /gene="yjjP" /locus_tag="SF4395" /db_xref="GeneID:1025364" CDS complement(4568384..4569217) /gene="yjjP" /locus_tag="SF4395" /note="Code: S; COG: COG2966" /codon_start=1 /transl_table=11 /product="structural protein" /protein_id="NP_710103.1" /db_xref="GeneID:1025364" /translation="MIQMDSHYLNNTQHVYDKGRVMQTEQQRAVTRLCIQCGLFLLQH GAESALVDELSSRLGRALGMDSVESSISSNAIVLTTIKDGQCLTSTRKNHDRGINMHV VTEVQHIVILAEHHLLDYKGVEKRFSQIQPLRYPRWLVALMVGLSCACFCKLNNGGWD GAVITFFASTTAMYIRQLLAQRHLHPQINFCLTAFAATTISGLLLQLPTFSNTPTIAM AASVLLLVPGFPLINAVADMFKGHINTGLARWAIASLLTLATCVGVVMALTIWGLRGW V" misc_feature complement(<4568387..4569148) /gene="yjjP" /locus_tag="SF4395" /note="Uncharacterized membrane protein YjjP, DUF1212 family [Function unknown]; Region: YjjP; COG2966" /db_xref="CDD:442206" mobile_element 4569723..4570490 /mobile_element_type="insertion sequence:IS1" gene 4569778..4570053 /gene="insA" /locus_tag="SF4396" /db_xref="GeneID:1027363" CDS 4569778..4570053 /gene="insA" /locus_tag="SF4396" /note="Code: L; COG: COG3677" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsA" /protein_id="NP_710104.1" /db_xref="GeneID:1027363" /translation="MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSHCRKTWQLQFT YTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR" misc_feature 4569799..>4570050 /gene="insA" /locus_tag="SF4396" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" gene 4570080..4570475 /gene="insB" /locus_tag="SF4397" /db_xref="GeneID:1027088" CDS 4570080..4570475 /gene="insB" /locus_tag="SF4397" /note="Code: L; COG: COG1662" /codon_start=1 /transl_table=11 /product="insertion element IS1 protein InsB" /protein_id="NP_710105.1" /db_xref="GeneID:1027088" /translation="MIVCAEMDEHWGYVGAKSRQRWLFYAYDRIRRTVVAHVFGERTL ATLERLLSLLSAFEVVVWMTDGWPLYESRLKGKLHVISKRYTQRIERHNLNLRQHLAR LVRKSLSFSKSVELHDKVIGHYLNIKHYQ" misc_feature 4570083..4570472 /gene="insB" /locus_tag="SF4397" /note="IS1 transposase; Region: DDE_Tnp_IS1; pfam03400" /db_xref="CDD:281403" gene 4570477..4571061 /gene="yjjQ" /locus_tag="SF4398" /db_xref="GeneID:1025205" CDS 4570477..4571061 /gene="yjjQ" /locus_tag="SF4398" /note="Code: TK; COG: COG2197" /codon_start=1 /transl_table=11 /product="regulator" /protein_id="NP_710106.1" /db_xref="GeneID:1025205" /translation="MESLPGLVIADLAGESEDPRSVCEHYYSLISQYREIHWVFMVSR SWYSQAVELLMCPTATLLSDVEPIENLVKTVRSGNTHAERISAMLTSPAMTETHDFSY RSVILTLSERKVLRLLGKGWGINQIASLLKKSNKTISAQKNSAMRRLAIHSNAEMYAW INSAQGARELNLPSVYGDAAEWNTAELRREMSHS" misc_feature 4570795..4570965 /gene="yjjQ" /locus_tag="SF4398" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(4570798..4570806,4570843..4570851,4570873..4570878, 4570882..4570887,4570891..4570905,4570936..4570938) /gene="yjjQ" /locus_tag="SF4398" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(4570831..4570833,4570837..4570839,4570843..4570845, 4570936..4570944,4570951..4570953,4570960..4570965) /gene="yjjQ" /locus_tag="SF4398" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 4571019..4571696 /gene="bglJ" /locus_tag="SF4399" /db_xref="GeneID:1026861" CDS 4571019..4571696 /gene="bglJ" /locus_tag="SF4399" /note="Code: TK; COG: COG2197" /codon_start=1 /transl_table=11 /product="2-component transcriptional regulator" /protein_id="NP_710107.5" /db_xref="GeneID:1026861" /translation="MEHSRIKKRNVALIEKCVMSSIGIESLFRKFAGNPYKLHTYTSQ ESFQDAMSRISFAAVIFSFSAMRSERREGLSCLTELAIKFPRTRRLVIVDDDIEARLI GSLSPSPLDGVLSKASTLEIFHQELFLSLNGVRQATDRLNNQWYINQSRTLSPTEREI LRFMSRGYSMTQIAEQLKRNIKTIRAHKFNVMSKLGVSSDAGLLEAADILLCMRHCEA SNVLHPY" misc_feature 4571073..4571693 /gene="bglJ" /locus_tag="SF4399" /note="DNA-binding transcriptional activator BglJ; Provisional; Region: PRK11475" /db_xref="CDD:236915" gene complement(4571734..4572522) /gene="fhuF" /locus_tag="SF4400" /db_xref="GeneID:1027612" CDS complement(4571734..4572522) /gene="fhuF" /locus_tag="SF4400" /codon_start=1 /transl_table=11 /product="ferric hydroximate transport ferric iron reductase" /protein_id="NP_710108.1" /db_xref="GeneID:1027612" /translation="MAYRSAPLYEDVIWRTHLQPQDAGLAQAVRAMIAKHREHLLEFI RLDEPAPLNAMTLAQWSSPNALSSLLAVYSDHIYRNQPTMIRENKPLISLWAQWYIGL MVPPLMLALLTQEKALDVSPEHFHAEFHETGRVACFWVDVCEDKNATPHSPQQRMETL ISQALVPVVQALEATGEINGKLIWSNTGYLINWYLTEMKQLLGEATVESLRHALFFEK TLTNGEDNPLWRTVVLRDGLLVRRTCCQRYRLPDVQQCGYCTLK" misc_feature complement(4571737..4572522) /gene="fhuF" /locus_tag="SF4400" /note="ferric iron reductase involved in ferric hydroximate transport; Provisional; Region: PRK10647" /db_xref="CDD:182616" gene 4572552..4572899 /locus_tag="SF4401" /db_xref="GeneID:1027177" CDS 4572552..4572899 /locus_tag="SF4401" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710109.1" /db_xref="GeneID:1027177" /translation="MLILAIGLLDSKGFLWLANDKNYHMILVFIINERDETMLQRTLG SGWGVLLPGLLIAGLMYADLSPDQWRIVILMGLVLTPVMLYHKQLRHYILLPSCLALI AGIMLMIMNLNQG" misc_feature 4572663..4572887 /locus_tag="SF4401" /note="Protein of unknown function (DUF1435); Region: DUF1435; pfam07256" /db_xref="CDD:429367" gene complement(4572938..4573024) /locus_tag="SF4551" /db_xref="GeneID:3161833" tRNA complement(4572938..4573024) /locus_tag="SF4551" /product="tRNA-Leu" /codon_recognized="CUG" /db_xref="GeneID:3161833" gene complement(4573060..4573148) /locus_tag="SF4552" /db_xref="GeneID:3161834" tRNA complement(4573060..4573148) /locus_tag="SF4552" /product="tRNA-Leu" /codon_recognized="CUG" /db_xref="GeneID:3161834" gene complement(4573177..4573263) /locus_tag="SF4553" /db_xref="GeneID:3161835" tRNA complement(4573177..4573263) /locus_tag="SF4553" /product="tRNA-Leu" /codon_recognized="CUG" /db_xref="GeneID:3161835" gene complement(4573540..4574571) /gene="rsmC" /locus_tag="SF4402" /db_xref="GeneID:1023943" CDS complement(4573540..4574571) /gene="rsmC" /locus_tag="SF4402" /note="Code: J; COG: COG2813" /codon_start=1 /transl_table=11 /product="16S rRNA methyltransferase" /protein_id="NP_710110.1" /db_xref="GeneID:1023943" /translation="MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARLDTAASRA HTQQFHHWQVLSCQMGDNARFSLVATANDVADCDTLIYYWPKNKPEAQFQLMNLLSLL PVGTDIFVVGENRSGVRSAEQMLADYAPLNKVDSARRCGLYFGRLEKQPVFDADKFWG EYSVDGLTVKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS PKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGCFDMIISNPPFHDGMQ TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETFGFHEVIAQTGRFKVYRA IMTRQAKKG" misc_feature complement(4573546..4574571) /gene="rsmC" /locus_tag="SF4402" /note="16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC; Region: rsmC; PRK09489" /db_xref="CDD:181902" gene 4574674..4575087 /gene="holD" /locus_tag="SF4403" /db_xref="GeneID:1026768" CDS 4574674..4575087 /gene="holD" /locus_tag="SF4403" /note="Code: L; COG: COG3050" /codon_start=1 /transl_table=11 /product="DNA polymerase III subunit psi" /protein_id="NP_710111.2" /db_xref="GeneID:1026768" /translation="MTSRRDWQLQQLGITQWSLRRPGALQGEIAIASPAHVRLVMVAN DLPALTDPLVSDVLRALTVSPDQVLQLTPEKIAMLPQGSRCNSWRLGTDEPLSLEGAQ VASPALTELRANPTARAALWQQICTYEHDFFPRND" misc_feature 4574677..4575084 /gene="holD" /locus_tag="SF4403" /note="DNA polymerase III, psi subunit [Replication, recombination and repair]; Region: HolD; COG3050" /db_xref="CDD:442284" gene 4575056..4575502 /gene="rimI" /locus_tag="SF4404" /db_xref="GeneID:1023573" CDS 4575056..4575502 /gene="rimI" /locus_tag="SF4404" /note="Code: R; COG: COG0456" /codon_start=1 /transl_table=11 /product="ribosomal-protein-alanine N-acetyltransferase" /protein_id="NP_710112.1" /db_xref="GeneID:1023573" /translation="MNTISSLETTDLPAAYHIEQRAHAFPWSEKTFASNQGERYLNFQ LTQNGKMAAFAITQVVLDEATLFNIAVDPDYQRQGLGRALLEHLIDELEKRGVATLWL EVRASNAAAIALYESLGFNEATIRRNYYPTTDGREDAIIMALPISM" misc_feature 4575056..4575493 /gene="rimI" /locus_tag="SF4404" /note="ribosomal-protein-alanine N-acetyltransferase; Provisional; Region: rimI; PRK09491" /db_xref="CDD:181904" misc_feature order(4575260..4575268,4575296..4575301) /gene="rimI" /locus_tag="SF4404" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 4575517..4576194 /gene="yjjG" /locus_tag="SF4405" /db_xref="GeneID:1027095" CDS 4575517..4576194 /gene="yjjG" /locus_tag="SF4405" /note="Code: R; COG: COG1011" /codon_start=1 /transl_table=11 /product="dUMP phosphatase" /protein_id="NP_710113.1" /db_xref="GeneID:1027095" /translation="MKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQA VNKPLWVDYQNGAITSLQLQHGRFESWAERLKVEAGLLNDAFINAMAEICTPLPGAVS LLNAIRSNAKIGIITNGFSALQQVRLERTGLRDYFDLLVISEEVGVAKPNKKIFDYAL EQAGNPDRSRVLMVGDTAESDILGGINAGLATCWLNAHNREQPEGIAPTWTVSSLHEL EQLLCKH" misc_feature 4575517..4576188 /gene="yjjG" /locus_tag="SF4405" /note="dUMP phosphatase; Provisional; Region: PRK09449" /db_xref="CDD:181865" gene 4576285..4577874 /gene="prfC" /locus_tag="SF4406" /db_xref="GeneID:1026848" CDS 4576285..4577874 /gene="prfC" /locus_tag="SF4406" /note="Code: J; COG: COG0480" /codon_start=1 /transl_table=11 /product="peptide chain release factor 3" /protein_id="NP_710114.2" /db_xref="GeneID:1026848" /translation="MTLSPYLKEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAG TVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVEN ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAA VGEDLAQQLRDELELVKGASNEFDKELFLAGEITPVFFGTALGNFGVDHMLNGLVEWA PAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQV RTAKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPN FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVV ARLKSEYNVEAVYESVNVATARWVECADAKKFEEFKRKNESQLALDGGDNLAYIATSM VNLRLAQERYPDVQFHQTREH" misc_feature 4576294..4577871 /gene="prfC" /locus_tag="SF4406" /note="peptide chain release factor 3; Provisional; Region: prfC; PRK00741" /db_xref="CDD:179105" gene 4578267..4578872 /gene="osmY" /locus_tag="SF4407" /db_xref="GeneID:1025054" CDS 4578267..4578872 /gene="osmY" /locus_tag="SF4407" /note="Code: R; COG: COG2823" /codon_start=1 /transl_table=11 /product="periplasmic protein" /protein_id="NP_710115.2" /db_xref="GeneID:1025054" /translation="MTMTRLKISKTLLAVMLTSAVATGSAYAENNAQTTNESAGQKVD SSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVKTDQKVVTLSGFVESQAQAEEA VKVAKGVEGVTSVSDKLHVRDAKEGSVKGYAGDTATTSEIKAKLLADDIVPSRKVKVE TTDGVVQLSGTVDSQAQSDRAESIAKAVDGVKSVKNDLKTK" misc_feature 4578273..4578869 /gene="osmY" /locus_tag="SF4407" /note="molecular chaperone OsmY; Region: PRK10568" /db_xref="CDD:182556" gene 4578959..4579150 /locus_tag="SF4408" /db_xref="GeneID:1026556" CDS 4578959..4579150 /locus_tag="SF4408" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710116.1" /db_xref="GeneID:1026556" /translation="MTLTMVKETLMFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIV FVVGIILFLVSLFMGRKRP" misc_feature 4578989..4579144 /locus_tag="SF4408" /note="Uncharacterized membrane protein YtjA, UPF0391 family [Function unknown]; Region: YtjA; COG5487" /db_xref="CDD:444238" gene 4579272..4580345 /gene="yjjU" /locus_tag="SF4409" /db_xref="GeneID:1024110" CDS 4579272..4580345 /gene="yjjU" /locus_tag="SF4409" /note="Code: R; COG: COG1752" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710117.2" /db_xref="GeneID:1024110" /translation="MGQRIPVTLGNIAPLSLRPFQPGRIALVCEGGGQRGIFTAGVLD EFMRAQFNPFDLYLGTSAGAQNLSAFICNQPGYARKVIMRYTTKREFFDPLRFVRGGN LIDLDWLVEATASQMPLQMDTAARLFDSGKSFYMCACRQDDYAPNYFLPTKQNWLDVI RASSAIPGFYRSGVSLEGINYLDGGISDAIPVKEAARQGAKTLVVIRTVPSQMYYTPQ WFKRMERWLGDSSLQPLVNLVQHHETSYRDIQQFIEKPPGKLRISEIYPPKPLHSIAL GSRIPALREDYKLGRLCGRYFLATVGKLLTEKAPLTRHLVPVVTPESIVIPPAPVAND TLVAEVSDAPQANDPTFNNEDLA" misc_feature 4579329..4580180 /gene="yjjU" /locus_tag="SF4409" /note="Predicted phospholipase, patatin/cPLA2 family [Lipid transport and metabolism]; Region: YjjU; COG4667" /db_xref="CDD:443704" gene 4580486..4581124 /gene="yjjV" /locus_tag="SF4410" /db_xref="GeneID:1023498" CDS 4580486..4581124 /gene="yjjV" /locus_tag="SF4410" /note="Code: L; COG: COG0084" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710118.2" /db_xref="GeneID:1023498" /translation="MQALAENYQPLYAVLGLHPGMLEKHSDVSLEQLQQALERRPAKV VAVGEIGLDLFGDDPQFERQQWLLDEQLKLAKRYDLPVILHSRRTHDKLAMHLKRHDL PRAGVVHGFSGSQQQAERFVQLGYKIGVGGTITYPRASKTRDVIAKLPLASLLLETDA PDMPLNGFQGQPNRPEQAARVFAVLCELRPEPADEIAEVLLNNTYAVFNVRG" misc_feature 4580486..4581115 /gene="yjjV" /locus_tag="SF4410" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:469705" gene complement(4581338..4582201) /gene="yjjW" /locus_tag="SF4411" /db_xref="GeneID:1026835" CDS complement(4581338..4582201) /gene="yjjW" /locus_tag="SF4411" /note="Code: O; COG: COG1180" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710119.1" /db_xref="GeneID:1026835" /translation="MNSRCALVSKIIPFSCVDGPGSRLALFLQGCNLRCKNCHNPWTM GRCNDCGECVPQCPHQALQIVDGKVVWNAVVCEQCDTCLKMCPQHATPMAQSMSVDEV LSHVRKAVLFIEGITVSGGEATTQLPFVVALFTAIKNDPQLRHLTCLVDSNGMLSETG WEKLLPVCDGAMLDLKAWGSECHQQLTGRDNQQIKRSIYLLAERGKLAELRLLMIPGQ VDYLQHIEELAAFIKGLGDVPVRLNAFHAHGVYGEAQSWASATPEDVEPLADALKVRG VSRLIFPALYL" misc_feature complement(4581353..4582189) /gene="yjjW" /locus_tag="SF4411" /note="glycine radical enzyme activase, YjjW family; Region: activase_YjjW; TIGR04041" /db_xref="CDD:274938" gene complement(4582173..4583714) /gene="yjjI" /locus_tag="SF4412" /db_xref="GeneID:1027369" CDS complement(4582173..4583714) /gene="yjjI" /locus_tag="SF4412" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710120.1" /db_xref="GeneID:1027369" /translation="MPTSHENALQQRCQQIVTSPVLSPEQKRHFLALEAENNLPYPQL PAEARRALDEGVICDMFEGHAPYKPRYVLPDYARFLANGSEWLELEGAKDLDDALSLL TILYHHVPSVTSMPVYLGQLDALLQPYVRILTQNEIDVRIKRFWRYLDRTLPDAFMHA NIGPSDSPITRAILRADAQVSPNLTFIYDPEITPDDLLLEVAKNICECSKPHIANGPV HDKIFTKGGYGIVSCYNSLPLAGGGSTLVRLNLKAIAERSESLDDFFTRTLPHYCQQQ IAIIDARCEFLYQQSHFFENSFLVKEGLINPERFVPMFGMYGLAEAVNLLCEKEGIAA RYGKEAAANEVGYRISAQLAEFVANTPVKYGWQKRAMLHAQSGISSDIGTTPGARLPY GDEPDPITHLQTVAPHHAYYYSGISDILTLDETIKRNPQALVQLCLGAFKAGMREFTA NVSGNDLVRVTGYMVRLSDLEKYRAEGSRTNTTWLGEEAARNTRILERQPRVISHEQQ MRFSQ" misc_feature complement(4582212..4583684) /gene="yjjI" /locus_tag="SF4412" /note="glycine radical enzyme, YjjI family; Region: glycyl_YjjI; TIGR04040" /db_xref="CDD:274937" gene 4583972..4584751 /gene="deoC" /locus_tag="SF4413" /db_xref="GeneID:1025052" CDS 4583972..4584751 /gene="deoC" /locus_tag="SF4413" /note="Code: F; COG: COG0274" /codon_start=1 /transl_table=11 /product="2-deoxyribose-5-phosphate aldolase" /protein_id="NP_710121.2" /db_xref="GeneID:1025052" /translation="MTDLKASSLRALKLMDLTTLNDDDTDEKVIALCHQAKTPVGNTA AICIYPRFIPIARKTLKEQGTPEIRIATVTNFPHGNDDIEIALAETRAAIAYGADEVD VVFPYRALMAGDEQVGFDLVKACKEACAAANVLLKVIIETGELKDEALIRKASEISIK AGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAI ADELFGADWADARHYRFGASSLLASLLKALGHGDGKSASSY" misc_feature 4583999..4584670 /gene="deoC" /locus_tag="SF4413" /note="A large family of domains similar to triose phosphate isomerase (TIM) which, in general, share an eight beta/alpha closed barrel structure; Region: TIM-like beta/alpha barrel domains; cl21457" /db_xref="CDD:473867" misc_feature order(4584029..4584031,4584035..4584037,4584041..4584043, 4584119..4584127,4584197..4584199,4584221..4584223, 4584236..4584238,4584251..4584262,4584287..4584289, 4584293..4584295,4584356..4584361,4584401..4584403) /gene="deoC" /locus_tag="SF4413" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:188646" misc_feature order(4584470..4584472,4584479..4584481,4584578..4584586, 4584641..4584646) /gene="deoC" /locus_tag="SF4413" /note="active site" /db_xref="CDD:188646" misc_feature 4584470..4584472 /gene="deoC" /locus_tag="SF4413" /note="catalytic residue [active]" /db_xref="CDD:188646" gene 4584878..4586200 /gene="deoA" /locus_tag="SF4414" /db_xref="GeneID:1025453" CDS 4584878..4586200 /gene="deoA" /locus_tag="SF4414" /note="Code: F; COG: COG0213" /codon_start=1 /transl_table=11 /product="thymidine phosphorylase" /protein_id="NP_710122.2" /db_xref="GeneID:1025453" /translation="MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAM TIFFHDMTMPERVSLTMAMRDSGTVLDWKSLHLNGPIVDKHSTGGVGDVTSLMLGPMV AACGGYIPMISGRGLGHTGGTLDKLESIPGFDIFPDDNRFREIIKDVGVAIIGQTSSL APADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSE ALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVT MALCVEMLISGKLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPTDFVENYAKYL PTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGDQ VDGQRPLAVILAKDENSWQEAAKAVKAAIKLADNAPESTPTVYRRISE" misc_feature 4584878..4586197 /gene="deoA" /locus_tag="SF4414" /note="thymidine phosphorylase; Reviewed; Region: deoA; PRK05820" /db_xref="CDD:180276" gene 4586252..4587475 /gene="deoB" /locus_tag="SF4415" /db_xref="GeneID:1026333" CDS 4586252..4587475 /gene="deoB" /locus_tag="SF4415" /note="Code: G; COG: COG1015" /codon_start=1 /transl_table=11 /product="phosphopentomutase" /protein_id="NP_710123.1" /db_xref="GeneID:1026333" /translation="MKRAFIMVLDSFGIGATEDAERFGDVGADTLGHIAEACAKGEAD NGRKGPLNLPNLTRLGLAKAHEGSTGFIPAGMDGNAEVIGAYAWAHEMSSGKDTPSGH WEIAGVPVLFEWGYFSDHENSFPQELLDKLVERANLPGYLGNCHSSGTVILDQLGEEH MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTNGGYNIGRVIARPFIG DKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKHGQVVSVGKIADIYANCGITKKVKAT GLDALFDATIKEMKEAGDNTIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMS LLRDDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTLA KYFGTSDMEYGKAMF" misc_feature 4586252..4587472 /gene="deoB" /locus_tag="SF4415" /note="phosphopentomutase; Provisional; Region: PRK05362" /db_xref="CDD:235430" misc_feature order(4586279..4586281,4586543..4586545,4586693..4586698, 4586756..4586758,4586768..4586770,4586774..4586776, 4586780..4586782,4586879..4586881,4586885..4586887, 4586891..4586893,4586927..4586929,4586939..4586941, 4587026..4587028,4587167..4587169,4587182..4587184, 4587290..4587295,4587326..4587328) /gene="deoB" /locus_tag="SF4415" /note="active site" /db_xref="CDD:293733" misc_feature order(4586543..4586545,4586693..4586698,4586756..4586758, 4586768..4586770,4586780..4586782,4586879..4586881, 4586885..4586887,4586891..4586893,4586927..4586929, 4587026..4587028,4587167..4587169,4587182..4587184, 4587293..4587295,4587326..4587328) /gene="deoB" /locus_tag="SF4415" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:293733" misc_feature order(4586693..4586698,4586768..4586770,4586774..4586776, 4586885..4586887,4586891..4586893,4586927..4586929, 4586939..4586941) /gene="deoB" /locus_tag="SF4415" /note="activator binding site [chemical binding]; other site" /db_xref="CDD:293733" gene 4587532..4588251 /gene="deoD" /locus_tag="SF4416" /db_xref="GeneID:1025413" CDS 4587532..4588251 /gene="deoD" /locus_tag="SF4416" /note="Code: F; COG: COG0813" /codon_start=1 /transl_table=11 /product="purine nucleoside phosphorylase" /protein_id="NP_710124.2" /db_xref="GeneID:1025413" /translation="MATPHINAEMGDFADVVLMPGDPLRAKYIAETFLEDAREVNNVR GMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVLPHVKLR DVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGVDARVGNLFSADLF YSPDGEMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAER QTTFNDMIKIALESVLLGDKE" misc_feature 4587535..4588239 /gene="deoD" /locus_tag="SF4416" /note="DeoD-type purine-nucleoside phosphorylase; Region: deoD; PRK05819" /db_xref="CDD:180275" misc_feature order(4587544..4587546,4587592..4587603,4587655..4587657, 4587661..4587666,4587724..4587729,4587733..4587738, 4587745..4587750,4587754..4587759,4587853..4587891, 4587898..4587921,4587925..4587930,4587934..4587939, 4587946..4587951,4587982..4587990,4587994..4587996, 4588003..4588014,4588039..4588053,4588057..4588059, 4588072..4588074,4588093..4588095,4588102..4588107, 4588111..4588113) /gene="deoD" /locus_tag="SF4416" /note="homohexamer interface [polypeptide binding]; other site" /db_xref="CDD:350157" misc_feature order(4587589..4587597,4587604..4587606,4587724..4587726, 4587793..4587810,4588009..4588011,4588066..4588077, 4588141..4588146,4588150..4588152) /gene="deoD" /locus_tag="SF4416" /note="active site" /db_xref="CDD:350157" misc_feature order(4587589..4587597,4587604..4587606,4587661..4587663, 4587793..4587804,4588075..4588077) /gene="deoD" /locus_tag="SF4416" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:350157" misc_feature order(4587724..4587726,4587793..4587795,4587802..4587810, 4588009..4588011,4588066..4588077,4588141..4588146, 4588150..4588152) /gene="deoD" /locus_tag="SF4416" /note="purine nucleoside binding site [chemical binding]; other site" /db_xref="CDD:350157" gene complement(4588412..4588675) /locus_tag="SF4417" /db_xref="GeneID:1026588" CDS complement(4588412..4588675) /locus_tag="SF4417" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710125.1" /db_xref="GeneID:1026588" /translation="MIDLENQEREIINLMFSQRISWLAAVRIRHKLSLAEVSKMLGIS INSLKQIEKTERLSSNIKSKMAEIYGCPPELLICPSWMTAEHK" misc_feature complement(4588436..4588648) /locus_tag="SF4417" /note="Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Region: HipB; COG1396" /db_xref="CDD:441006" gene complement(4588708..4589722) /gene="lplA" /locus_tag="SF4418" /pseudo /db_xref="GeneID:1024122" misc_feature complement(4588708..4589722) /gene="lplA" /locus_tag="SF4418" /note="Similar to Escherichia coli K12 lipoate-protein ligase A gi: 1790846 (339 aa). BLAST with identity of 97% in 338 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene complement(4589750..4590394) /gene="smp" /locus_tag="SF4419" /db_xref="GeneID:1026586" CDS complement(4589750..4590394) /gene="smp" /locus_tag="SF4419" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710126.1" /db_xref="GeneID:1026586" /translation="MARTKLKFRLHRAVIVLFCLALLVALMQGASWFSQNHQRQRNPQ LEELARTLARQVTLNVAPLMRTDSPDEKRIQAILDQLTDESRILDAGVYDEQGDLIAR SGESVEVRDRLALDGKKAGGYFNQQIVEPIAGKNGPLGYLRLTLDTHTLATEAQQVDN TTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTASKPVPEEEESEKKE" misc_feature complement(<4589753..4590394) /gene="smp" /locus_tag="SF4419" /note="unknown domain/lipoate-protein ligase A fusion protein; Provisional; Region: PRK14061" /db_xref="CDD:172552" gene 4590500..4591468 /gene="serB" /locus_tag="SF4420" /db_xref="GeneID:1025178" CDS 4590500..4591468 /gene="serB" /locus_tag="SF4420" /note="Code: E; COG: COG0560" /codon_start=1 /transl_table=11 /product="phosphoserine phosphatase" /protein_id="NP_710127.1" /db_xref="GeneID:1025178" /translation="MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYG RGLDKQRLTQYQSKLGAAMVIVAAWCVEDYQVIRLAGSLTARATRLAHEAQLDVAPLG KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEMVAEVTERAMRGELDFTASLRS RVATLKGADANILQQVRENLPLMPGLTQLVLKLETLGWKVAIASGGFTFFAEYLRDKL RLTAVVANELEIMDGKFTGNVIGDIVDAQYKAKTLTRLAQEYEIPLAQTVAIGDGAND LPMIKAAGLGIAYHAKPKVNEKAEVTIRHADLMGVFCILSGSLNQK" misc_feature 4590500..4591465 /gene="serB" /locus_tag="SF4420" /note="phosphoserine phosphatase; Provisional; Region: serB; PRK11133" /db_xref="CDD:182988" gene 4591517..4592899 /gene="sms" /locus_tag="SF4421" /db_xref="GeneID:1024205" CDS 4591517..4592899 /gene="sms" /locus_tag="SF4421" /note="Code: O; COG: COG1066" /codon_start=1 /transl_table=11 /product="DNA repair protein RadA" /protein_id="NP_710128.2" /db_xref="GeneID:1024205" /translation="MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPT VARNERLSGYAGSAGVAKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGG NPGAGKSTLLLQTLCKLAQQMKTLYVTGEESLQQVAMRAHRLGLPTDNLNMLSETSIE QICLIAEEEQPKLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSIMANPRRVAVGLE QNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKAPEGMQIFGVKKL SDALSVFDDL" misc_feature 4591517..4592878 /gene="sms" /locus_tag="SF4421" /note="DNA repair protein RadA; Region: sms; TIGR00416" /db_xref="CDD:273067" gene 4592899..4594152 /gene="nadR" /locus_tag="SF4422" /db_xref="GeneID:1025728" CDS 4592899..4594152 /gene="nadR" /locus_tag="SF4422" /codon_start=1 /transl_table=11 /product="nadAB transcriptional regulator" /protein_id="NP_710129.3" /db_xref="GeneID:1025728" /translation="MRDTEGDMSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLN AKIKSPSAQKLEALHRFLGLEFPRQKKTIGVVFGKFYPLHTGHIYLIQRACSQVDELH IIMGFDDTRDRALFEDSAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHG WDVWSNGIKKFMAEKGIQPDLIYTSEEADAPQYMEHLGIETVLVDPKRTFMSISGAQI RENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVF SHLGGDEIALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREH PFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQNLLVEMLEENNIEFVR VEEDDYDSRFLRCVELVREMMGEQG" misc_feature 4592956..4594149 /gene="nadR" /locus_tag="SF4422" /note="multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR; Region: PRK08099" /db_xref="CDD:236151" gene complement(4594460..4596127) /gene="yjjK" /locus_tag="SF4423" /db_xref="GeneID:1025214" CDS complement(4594460..4596127) /gene="yjjK" /locus_tag="SF4423" /note="Code: R; COG: COG0488" /codon_start=1 /transl_table=11 /product="ABC transporter ATP-binding protein" /protein_id="NP_710130.1" /db_xref="GeneID:1025214" /translation="MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAG KSTLLRIMAGIDKDIEGEARPQPDIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALK RLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKI ANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHD RYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWV RQGTKGRQSKGKARLARFEELNSTEYQKRNETNELFIPPGPRLGDKVLEVSNLRKSYG DRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMISGQEQPDSGTITLGETVKLASVD QFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGER GRLHLAKLLQVGGNMLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIA THILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK" misc_feature complement(4594463..4596127) /gene="yjjK" /locus_tag="SF4423" /note="putative ABC transporter ATP-binding protein; Reviewed; Region: PRK11819" /db_xref="CDD:236992" gene 4596311..4598275 /gene="slt" /locus_tag="SF4424" /db_xref="GeneID:1025194" CDS 4596311..4598275 /gene="slt" /locus_tag="SF4424" /note="Code: M; COG: COG0741" /codon_start=1 /transl_table=11 /product="soluble lytic murein transglycosylase" /protein_id="NP_710131.4" /db_xref="GeneID:1025194" /translation="MYLHLEDALVEKAKQVTWRLLAAGVCLLTVSSVARADSLDEQRS RYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANP TLPPARTLQSRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQG AKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPA DYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSL AQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGT GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLIQQRGFYPMVA AQRIGEEYELKIDKAPQNVDSTLTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKT EQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYNDLFKRYTSGKEIPQSYAM AIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIG TSYLQYVYQQFGNNRIFSSAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETRGYV KNVLAYDAYYRYFMGDKPTLMSATEWGRRY" misc_feature 4596338..4598272 /gene="slt" /locus_tag="SF4424" /note="lytic murein transglycosylase; Provisional; Region: PRK11619" /db_xref="CDD:183236" gene 4598365..4598691 /gene="trpR" /locus_tag="SF4425" /db_xref="GeneID:1025866" CDS 4598365..4598691 /gene="trpR" /locus_tag="SF4425" /note="Code: K; COG: COG2973" /codon_start=1 /transl_table=11 /product="Trp operon repressor" /protein_id="NP_710132.1" /db_xref="GeneID:1025866" /translation="MAQQSPYSAAMAEQRHQEWLRFVDLLKNAYQNDLHLPLLNLMLT PDEREALGTRVRIVEELLRGEMSQRELKNELGAGIATITRGSNSLKAAPVELRQWLEE VLLKSD" misc_feature 4598392..4598688 /gene="trpR" /locus_tag="SF4425" /note="Trp operon repressor [Transcription]; Region: TrpR; COG2973" /db_xref="CDD:442212" gene complement(4598788..4599305) /gene="yjjX" /locus_tag="SF4426" /pseudo /db_xref="GeneID:1027380" misc_feature complement(4598788..4599305) /gene="yjjX" /locus_tag="SF4426" /note="Similar to Escherichia coli K12 conserved hypothetical protein gi: 1790855 (174 aa). BLAST with identity of 95% in 172 aa. This CDS ontains frameshift. The sequence has been checked and is believed to be correct." /pseudo gene 4599348..4599995 /gene="gpmB" /locus_tag="SF4427" /db_xref="GeneID:1027579" CDS 4599348..4599995 /gene="gpmB" /locus_tag="SF4427" /note="Code: G; COG: COG0406" /codon_start=1 /transl_table=11 /product="phosphoglycerate mutase" /protein_id="NP_710133.1" /db_xref="GeneID:1027579" /translation="MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVATRAK ELGITHIISSDLGRTRRTAEIIAQACGCDIIFDSRLRELNMGVLEKRHIDSLTEEEEN WRRQLVNGTVDGRIPEGESMQELSDRVNAALESCRDLPQGSRPLLVSHGIALGCLVST ILGLPAWAERRLRLRNCSISRVDYQESLWLASGWVVETAGDISHLDAPALDELQR" misc_feature 4599348..4599992 /gene="gpmB" /locus_tag="SF4427" /note="phosphoglycerate mutase GpmB; Region: PRK03482" /db_xref="CDD:179583" misc_feature order(4599369..4599374,4599519..4599521,4599795..4599800) /gene="gpmB" /locus_tag="SF4427" /note="catalytic core [active]" /db_xref="CDD:132718" gene complement(4599992..4600861) /gene="rob" /locus_tag="SF4428" /db_xref="GeneID:1027496" CDS complement(4599992..4600861) /gene="rob" /locus_tag="SF4428" /note="Code: K; COG: COG2207" /codon_start=1 /transl_table=11 /product="right oriC-binding transcriptional activator" /protein_id="NP_710134.1" /db_xref="GeneID:1027496" /translation="MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD VTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPAL YRRSPEWSAFGIRPPLRLGEFTMPEHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMR YQFWHDFLGNAPTIPPVLYGLNETRPSQDKDDEQEVFYTTALAQDQADGYVLTGHPVM LQGGEYVMFTYEGLGTGVQEFILTVYGTCMPMLNLTRRKGQDIERYYPAEDAKAGDRP INLRCELLIPIRR" misc_feature complement(4599995..4600861) /gene="rob" /locus_tag="SF4428" /note="MDR efflux pump AcrAB transcriptional activator RobA; Region: PRK15121" /db_xref="CDD:185076" gene 4601072..4601545 /gene="creA" /locus_tag="SF4429" /db_xref="GeneID:1025790" CDS 4601072..4601545 /gene="creA" /locus_tag="SF4429" /note="Code: S; COG: COG3045" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710135.1" /db_xref="GeneID:1025790" /translation="MKYKHLILSLSLIMLGPLAHAEEIGSVDTVFKMIGPDHKIVVEA FDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELSDRIKNGKAQGE VVFKKRTSLVFKSLQVVRFYDAKRNALAYLAYSDKVVEGSPKNAISAVPVMPWRQ" misc_feature 4601072..4601542 /gene="creA" /locus_tag="SF4429" /note="protein CreA; Region: PRK10756" /db_xref="CDD:236752" gene 4601558..4602247 /gene="creB" /locus_tag="SF4430" /db_xref="GeneID:1025438" CDS 4601558..4602247 /gene="creB" /locus_tag="SF4430" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="DNA-binding response regulator CreB" /protein_id="NP_710136.1" /db_xref="GeneID:1025438" /translation="MQRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLPVLDKAR QQVPDVMILDVGLPDISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEIGADDYV AKPFSPREVCARVRTLLRRVKKFSTPSPVIRIGHFELNEPAAQISWFDTPLTLTRYEF LLLKTLLKSPGRVWSRQQLMDSVWEDAQDTYDRTVDIHIKTLRAKLRAINPDLSPINT HRGMGYSLRGL" misc_feature 4601558..4602241 /gene="creB" /locus_tag="SF4430" /note="DNA-binding response regulator CreB; Provisional; Region: PRK11083" /db_xref="CDD:236838" gene 4602247..4603671 /gene="creC" /locus_tag="SF4431" /db_xref="GeneID:1027376" CDS 4602247..4603671 /gene="creC" /locus_tag="SF4431" /note="Code: T; COG: COG0642" /codon_start=1 /transl_table=11 /product="sensory histidine kinase CreC" /protein_id="NP_710137.1" /db_xref="GeneID:1027376" /translation="MRIGMRLLLGYFLLVAVAAWFVLAIFVKEVKPGVRRATEGTLID TATLLAELARPDLLSGDPTHGQLAQAFNQLQHRPFRANIGGINKVRNEYHVYMTDAHG KVLFDSANKAVGQDYSRWNDVWLTLRGQYGARSTLQNPADPESSVMYVAAPIMGGSRL IGVLSVGKPNAAMAPVIKRSERRILWASAILLGIALVIGAGMVWWINRSIARLTRYAD SVTDNKPVPLPDLGSSELRKLAQALESMRVKLEGKNYIEQYVYALTHELKSPLAAIRG AAEILREGPPPEVVARFTDNILTQNARMQALVETLLRQARLENRQEVVLTAVDVAALF RRVSEARTVQLAEKNITLHVMPTEVNVAAEPALLDQALGNLLDNAIDFTPESGCITLS AEVDQEHVTLKVLDTGSGIPDYALSRIFERFYSLPRANGQKSSGLGLAFVSEVARLFN GEVTLRNVQEGGVLASLRLHRHFT" misc_feature 4602247..4603665 /gene="creC" /locus_tag="SF4431" /note="sensory histidine kinase CreC; Provisional; Region: PRK11100" /db_xref="CDD:236846" gene 4603729..4605081 /gene="creD" /locus_tag="SF4432" /db_xref="GeneID:1026752" CDS 4603729..4605081 /gene="creD" /locus_tag="SF4432" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_710138.1" /db_xref="GeneID:1026752" /translation="MLKSPLFWKMTTLFGAVLLLLIPIMLIRQVIVERADYRSDVEDA IRQSTSGPQKLVGPLIAIPVTELYTVQEEDKTVERKRSFIHFWLPESLMVDGNQNVEE RKIGIYTGQVWHSDLTLKADFDVSRLSELNAPNIILGKPFIVISVGDARGIGVVKAPE VNGTALTIEPGTGLEQGGQGVHIPLPEGDWRKQNLQLNMALNLSGTGDLSVVPAGRNS EMTLTSNWPHPSFLGDFLPAKREASESGFQAQWQSSWFANNLGERFASGNDTGWENFP AFSVAVTTPADQYQLTDRATKYAILLIALTFMAFFVFETLTAQRLHPMQYLLVGLSLV MFYLLLLALSEHIGFTVAWIIASLIGALMNGIYLQAVLKGWRNSMLFTLALLLLDGVM WGLLNSADSALLLGTSVLVVALAGMMFVTRNIDWYAFSLPKMKASKEVTTDDELRIWK " misc_feature 4603729..4605012 /gene="creD" /locus_tag="SF4432" /note="cell envelope integrity protein CreD; Region: PRK11715" /db_xref="CDD:236960" gene complement(4605140..4605856) /gene="arcA" /locus_tag="SF4433" /db_xref="GeneID:1026731" CDS complement(4605140..4605856) /gene="arcA" /locus_tag="SF4433" /note="Code: TK; COG: COG0745" /codon_start=1 /transl_table=11 /product="two-component response regulator" /protein_id="NP_710139.2" /db_xref="GeneID:1026731" /translation="MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT KPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDT PEIIATIHGEGYRFCGDLED" misc_feature complement(4605146..4605856) /gene="arcA" /locus_tag="SF4433" /note="two-component response regulator; Provisional; Region: PRK11173" /db_xref="CDD:183013" gene 4606492..4607178 /gene="lasT" /locus_tag="SF4434" /db_xref="GeneID:1025225" CDS 4606492..4607178 /gene="lasT" /locus_tag="SF4434" /note="Code: J; COG: COG0565" /codon_start=1 /transl_table=11 /product="RNA methyltransferase" /protein_id="NP_710140.2" /db_xref="GeneID:1025225" /translation="MRITIILVAPARAENIGAAARAMKTMGFSELRIVDSQAHLEPAT RWVAHGSGDIIDNIKVFPTLAESLHDVDFTVATTARSRAKYHYYATPVELVPLLEEKS SWMSHAALVFGREDSGLTNEELALADVLTGVPMVADYPSLNLGQAVMVYCYQLATLIQ QPAKSDTTADQHQLQALRERVMALLTTLAVADDIKLVDWLQQRLGLLEQRDTAMLHRL LHDIEKNITK" misc_feature 4606492..4607175 /gene="lasT" /locus_tag="SF4434" /note="putative RNA methyltransferase; Provisional; Region: PRK10433" /db_xref="CDD:236693" misc_feature order(4606552..4606554,4606561..4606572,4606762..4606767, 4606834..4606836,4606891..4606899,4606912..4606920, 4606924..4606929,4606936..4606941,4606948..4606953) /gene="lasT" /locus_tag="SF4434" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349966" misc_feature order(4606720..4606728,4606825..4606836,4606843..4606845, 4606882..4606890,4606912..4606917,4606921..4606923, 4606930..4606932) /gene="lasT" /locus_tag="SF4434" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:349966" CONTIG join(AE005674.2:1..4607202)