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LOCUS NP_706761 552 aa linear CON 24-AUG-2016 ACCESSION NP_706761 VERSION NP_706761.1 DBLINK BioProject: PRJNA62907 Assembly: GCF_000006925.2 DBSOURCE REFSEQ: accession NC_004337.2 KEYWORDS RefSeq. SOURCE Shigella flexneri 2a str. 301 ORGANISM Shigella flexneri 2a str. 301 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Shigella. REFERENCE 1 (residues 1 to 552) AUTHORS Jin,Q., Yuan,Z., Xu,J., Wang,Y., Shen,Y., Lu,W., Wang,J., Liu,H., Yang,J., Yang,F., Zhang,X., Zhang,J., Yang,G., Wu,H., Qu,D., Dong,J., Sun,L., Xue,Y., Zhao,A., Gao,Y., Zhu,J., Kan,B., Ding,K., Chen,S., Cheng,H., Yao,Z., He,B., Chen,R., Ma,D., Qiang,B., Wen,Y., Hou,Y. and Yu,J. TITLE Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157 JOURNAL Nucleic Acids Res. 30 (20), 4432-4441 (2002) PUBMED 12384590 REFERENCE 2 (residues 1 to 552) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (26-AUG-2011) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 552) AUTHORS Jin,Q., Shen,Y., Wang,J.H., Liu,H., Yang,J., Yang,F., Zhang,X.B., Zhang,J.Y., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y., Zhao,A.L., Gao,Y.S., Zhu,J.P., Chen,S.X., Yao,Z.J., Wang,Y., Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D. TITLE Direct Submission JOURNAL Submitted (03-AUG-2011) State Key Laboratory for Moleclular Virology and Genetic Engineering, Microbial Genome Center of Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA, Beijing 100176, P.R.China REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 552) AUTHORS Jin,Q., Shen,Y., Wang,J.H., Liu,H., Yang,J., Yang,F., Zhang,X.B., Zhang,J.Y., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y., Zhao,A.L., Gao,Y.S., Zhu,J.P., Chen,S.X., Yao,Z.J., Wang,Y., Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D. TITLE Direct Submission JOURNAL Submitted (06-DEC-2004) State Key Laboratory for Moleclular Virology and Genetic Engineering, Microbial Genome Center of Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA, Beijing 100176, P.R.China REMARK Sequence update by submitter REFERENCE 5 (residues 1 to 552) AUTHORS Jin,Q., Shen,Y., Wang,J.H., Liu,H., Yang,J., Yang,F., Zhang,X.B., Zhang,J.Y., Yang,G.W., Wu,H.T., Dong,J., Sun,L.L., Xue,Y., Zhao,A.L., Gao,Y.S., Zhu,J.P., Chen,S.X., Yao,Z.J., Wang,Y., Lu,W.C., Qiang,B.Q., Wen,Y.M. and Hou,Y.D. TITLE Direct Submission JOURNAL Submitted (21-MAY-2001) State Key Laboratory for Moleclular Virology and Genetic Engineering, Microbial Genome Center of Chinese Ministry of Public Health, 6 Rongjing Eastern Street, BDA, Beijing 100176, P.R.China COMMENT REVIEWED REFSEQ: This record has been curated by NCBI staff. The reference sequence is identical to AAN42468. RefSeq Category: Reference Genome CLI: Clinical Isolate FGS: First Genome sequenced Method: conceptual translation. FEATURES Location/Qualifiers source 1..552 /organism="Shigella flexneri 2a str. 301" /strain="301" /serotype="2a" /db_xref="taxon:198214" Protein 1..552 /product="hypothetical protein" /calculated_mol_wt=63426 Region 1..375 /region_name="DUF2813" /note="Protein of unknown function (DUF2813); pfam11398" /db_xref="CDD:431868" Region 376..472 /region_name="TOPRIM_OLD" /note="topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity; cd01026" /db_xref="CDD:173776" Site order(385..386,389,438,440) /site_type="active" /note="putative active site [active]" /db_xref="CDD:173776" Site order(385,438) /site_type="other" /note="putative metal-binding site [ion binding]" /db_xref="CDD:173776" CDS 1..552 /gene="ybjD" /locus_tag="SF0835" /coded_by="NC_004337.2:867786..869444" /note="Code: L; COG: COG3593" /transl_table=11 /db_xref="GeneID:1023817" CONTIG join(WP_000599806.1:1..552) ORIGIN 1 milerveivg frginrlslm leqnnvlige nawgksslld altlllspes dlyhferddf 61 wfppgdingr ehhlhiiltf reslpgrhrv rryrpleacw tpctdgyhri fyrlegesae 121 dgsvmtlrsf ldkdghpidv edindqarhl vrlmpvlrlr darfmrrirn gtvpnvpnve 181 vtarqldfla relsshpqnl sdgqirqgls amvqllehyf seqgagqary rlmrrrasne 241 qrswryldii nrmidrpggr syrvillglf atllqakgtl rldkdarpll liedpetrlh 301 pimlsvawhl lnllplqria ttnsgellsl tpvehvcrlv ressrvaawr lgpsglsted 361 srrisfhirf nrpsslfarc wllvegetet wvinelarqc ghhfdaegik viefaqsglk 421 plvkfarrmg iewhvlvdgd eagkkyaatv rsllnndrea erehltalpa ldmehfmyrq 481 gfsdvfhrva qipenvpmnl rkiiskaihr sskpdlaiev ameagrrgvd svptllkkmf 541 srvlwlargr ad