uncharacterized protein Trf2 isoform X1 [Drosophila takahashii].

LOCUS       XP_017016284            1558 aa            linear   INV 09-DEC-2024
ACCESSION   XP_017016284
VERSION     XP_017016284.3
DBLINK      BioProject: PRJNA1194641
DBSOURCE    REFSEQ: accession XM_017160795.3
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XP_017016284.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Drosophila takahashii"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     Protein         1..1558
                     /product="uncharacterized protein Trf2 isoform X1"
                     /calculated_mol_wt=175162
     Region          <457..644
                     /region_name="MSCRAMM_ClfA"
                     /note="MSCRAMM family adhesin clumping factor ClfA;
                     NF033609"
                     /db_xref="CDD:468110"
     Region          1121..1294
                     /region_name="TLF"
                     /note="TBP-like factors (TLF; also called TLP, TRF, TRP),
                     which are found in most metazoans. TLFs and TBPs have
                     well-conserved core domains; however, they only share
                     about 60% similarity. TLFs, like TBPs, interact with TFIIA
                     and TFIIB, which are part of the...; cd04517"
                     /db_xref="CDD:239953"
     Site            order(1126..1127,1129,1155..1156,1160,1162,1169,1171,1175,
                     1177,1179,1181,1211,1216,1218,1247..1248,1253,1266,1268,
                     1270,1274)
                     /site_type="other"
                     /note="putative DNA interaction surface [nucleotide
                     binding]"
                     /db_xref="CDD:239953"
     Site            order(1141,1148..1150,1152,1156,1162,1164)
                     /site_type="other"
                     /note="putative TFIIA interaction surface [polypeptide
                     binding]"
                     /db_xref="CDD:239953"
     Site            order(1228..1229,1241..1245,1248,1253)
                     /site_type="other"
                     /note="putative TFIIB interaction surface [polypeptide
                     binding]"
                     /db_xref="CDD:239953"
     CDS             1..1558
                     /gene="Trf2"
                     /coded_by="XM_017160795.3:501..5177"
                     /db_xref="GeneID:108070355"
ORIGIN      
        1 mkenekipsn lleimgivls knssdsgqrt ststsdvnee nrvssfepgr rlvlnevsge
       61 faqerdtent sspsprkees neesadssdk enqypnhrps raddsrspds vaetenfkds
      121 dveigansvv lsesqiqheq deslvsdple eeeekeheee vasgneseek dsprqnsfee
      181 gtsgdnnsdk dspskasnss sstpkrpysg sdnrsseert pkrrrqsvsd sednrrtlft
      241 dsednpikqr rltyreqvea yrrrvdagst pgrkssssee eppppsppfr yselyweqrr
      301 asdadsepds afkyrpnany hrtsprnysd eeeeeeipes dtdqnsggpl gyrvetrstn
      361 yessetsede arrrtvrrvv rrrrrprnpe hrepeyrgee qsessplpss espdrqdnsd
      421 enesdeeekr vipsrrrttd dqqpsfsgwg yltcrqdady fseptdgkii rkrkspfeee
      481 ssnqskrrps edtesedsek edsekvdsek edsekedsdk edsdkedsdk edsdkedsdk
      541 edsekedsek edsdkedsdn ggsdtekedr ntdkrdsdtd ndsntedpqd prdsqdsasd
      601 neqvpdstge pdqdneqfpd steepdqdne qfpdsteepd qdkelgqtaa wtitpddpkg
      661 iqdfqdfvlk qvqlineiie vghqvfqlgs ivchgdftff qtlyerkvpi eevvelvyrg
      721 ilgvkeelrv aliarqdlse phskdiirpg dklaylrldl fnkfvskvnq serivdqrll
      781 elqevrkqqg lleqkqrvle rvrqqreqhr lqqlqverer eerqeeeqrr lelerhlerw
      841 kedfnrqlrl qreqeeiklr qeeenrkree errsnydsyy cqlpkhkhre qmqnemvsip
      901 vanlngglka assgsggvvg vvtssgvvss avlanaprvy ltpsstfman rgqvaagaga
      961 tgkiaggsnv tssvgtssat agtvryfsqf skmqtaggps lqrklangdt ivlangnksl
     1021 flsssggvgg dkatngnsll taktelleee vmqpgtvivd cdddddeden enededdedg
     1081 edkdeknnsh takssgvqqe qplalttatn naaasddepe ldivinnvvc sfsvgchlkl
     1141 reialqgsnv eyrrengmvt mklrhpytta siwssgritc tgatseamak vaarryartl
     1201 gklgfptrfl nfrivnvlgt csmpwaikiv nfserhrena syepelhpgv tykmrdpdpk
     1261 atlkifstgs vtvtaasvsh vesaiqhiyp lvfefrkqrs leelqhlrqk qhkqaggdps
     1321 eleklivaen kaaglddifl nttaahtkps pnertpatsg iltstidsmq rlkqienysh
     1381 mmkltqeerr hipfqgekvn paaastsaaa aassgdnica narrratecw atklqykrpr
     1441 yndpgttgtv nasstaasss aasssssqaa phlrtnplkt aalanarmrg akmptvlkpg
     1501 trlapigggy lqhqqhlqqq qqlqqqqqkm rqtsfspsef dvddlieeee sneldmqy