Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017160795 9010 bp mRNA linear INV 09-DEC-2024 factor 2 (Trf2), transcript variant X4, mRNA. ACCESSION XM_017160795 VERSION XM_017160795.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160795.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..9010 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..9010 /gene="Trf2" /note="TATA box binding protein-related factor 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins" /db_xref="GeneID:108070355" CDS 501..5177 /gene="Trf2" /codon_start=1 /product="uncharacterized protein Trf2 isoform X1" /protein_id="XP_017016284.3" /db_xref="GeneID:108070355" /translation="MKENEKIPSNLLEIMGIVLSKNSSDSGQRTSTSTSDVNEENRVS SFEPGRRLVLNEVSGEFAQERDTENTSSPSPRKEESNEESADSSDKENQYPNHRPSRA DDSRSPDSVAETENFKDSDVEIGANSVVLSESQIQHEQDESLVSDPLEEEEEKEHEEE VASGNESEEKDSPRQNSFEEGTSGDNNSDKDSPSKASNSSSSTPKRPYSGSDNRSSEE RTPKRRRQSVSDSEDNRRTLFTDSEDNPIKQRRLTYREQVEAYRRRVDAGSTPGRKSS SSEEEPPPPSPPFRYSELYWEQRRASDADSEPDSAFKYRPNANYHRTSPRNYSDEEEE EEIPESDTDQNSGGPLGYRVETRSTNYESSETSEDEARRRTVRRVVRRRRRPRNPEHR EPEYRGEEQSESSPLPSSESPDRQDNSDENESDEEEKRVIPSRRRTTDDQQPSFSGWG YLTCRQDADYFSEPTDGKIIRKRKSPFEEESSNQSKRRPSEDTESEDSEKEDSEKVDS EKEDSEKEDSDKEDSDKEDSDKEDSDKEDSDKEDSEKEDSEKEDSDKEDSDNGGSDTE KEDRNTDKRDSDTDNDSNTEDPQDPRDSQDSASDNEQVPDSTGEPDQDNEQFPDSTEE PDQDNEQFPDSTEEPDQDKELGQTAAWTITPDDPKGIQDFQDFVLKQVQLINEIIEVG HQVFQLGSIVCHGDFTFFQTLYERKVPIEEVVELVYRGILGVKEELRVALIARQDLSE PHSKDIIRPGDKLAYLRLDLFNKFVSKVNQSERIVDQRLLELQEVRKQQGLLEQKQRV LERVRQQREQHRLQQLQVEREREERQEEEQRRLELERHLERWKEDFNRQLRLQREQEE IKLRQEEENRKREEERRSNYDSYYCQLPKHKHREQMQNEMVSIPVANLNGGLKAASSG SGGVVGVVTSSGVVSSAVLANAPRVYLTPSSTFMANRGQVAAGAGATGKIAGGSNVTS SVGTSSATAGTVRYFSQFSKMQTAGGPSLQRKLANGDTIVLANGNKSLFLSSSGGVGG DKATNGNSLLTAKTELLEEEVMQPGTVIVDCDDDDDEDENENEDEDDEDGEDKDEKNN SHTAKSSGVQQEQPLALTTATNNAAASDDEPELDIVINNVVCSFSVGCHLKLREIALQ GSNVEYRRENGMVTMKLRHPYTTASIWSSGRITCTGATSEAMAKVAARRYARTLGKLG FPTRFLNFRIVNVLGTCSMPWAIKIVNFSERHRENASYEPELHPGVTYKMRDPDPKAT LKIFSTGSVTVTAASVSHVESAIQHIYPLVFEFRKQRSLEELQHLRQKQHKQAGGDPS ELEKLIVAENKAAGLDDIFLNTTAAHTKPSPNERTPATSGILTSTIDSMQRLKQIENY SHMMKLTQEERRHIPFQGEKVNPAAASTSAAAAASSGDNICANARRRATECWATKLQY KRPRYNDPGTTGTVNASSTAASSSAASSSSSQAAPHLRTNPLKTAALANARMRGAKMP TVLKPGTRLAPIGGGYLQHQQHLQQQQQLQQQQQKMRQTSFSPSEFDVDDLIEEEESN ELDMQY" misc_feature <1869..2432 /gene="Trf2" /note="MSCRAMM family adhesin clumping factor ClfA; Region: MSCRAMM_ClfA; NF033609" /db_xref="CDD:468110" misc_feature 3861..4382 /gene="Trf2" /note="TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the...; Region: TLF; cd04517" /db_xref="CDD:239953" misc_feature order(3876..3881,3885..3887,3963..3968,3978..3980, 3984..3986,4005..4007,4011..4013,4023..4025,4029..4031, 4035..4037,4041..4043,4131..4133,4146..4148,4152..4154, 4239..4244,4257..4259,4296..4298,4302..4304,4308..4310, 4320..4322) /gene="Trf2" /note="putative DNA interaction surface [nucleotide binding]; other site" /db_xref="CDD:239953" misc_feature order(3921..3923,3942..3950,3954..3956,3966..3968, 3984..3986,3990..3992) /gene="Trf2" /note="putative TFIIA interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" misc_feature order(4182..4187,4221..4235,4242..4244,4257..4259) /gene="Trf2" /note="putative TFIIB interaction surface [polypeptide binding]; other site" /db_xref="CDD:239953" polyA_site 9010 /gene="Trf2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gtgagtgcgc acacacacgc acgcgcgcac gcagcaattg tgtttgtgca agtgacgttt 61 catttcgttc tgttttgttt tgcttgcttt cgtcgcgttt gctgattact atttacagta 121 aataacggcg agatacgcga aataactgtg atcctttgat taaagactgc aaaggaacaa 181 caaaaactac aagctaattt aaataggaga aagaacggaa gactagacat aatcgtaata 241 cagagtagtt tagcattagg gaaccgacaa caacaaaaac cactgcaaac actaattcta 301 attcaaaatt acactaaaag agtatttttt cagccctaag agcaaacaca cacacacata 361 cacaccacac acacaaacga aagaagaaga atttgtagaa gaatcacttt tagccttata 421 tacaactaca aagaaaaaaa aaagaacgca agttagtatt aagttaagat gctagaaaga 481 gaggacgtag caagaatcct atgaaagaaa acgagaagat tccaagtaat ttgcttgaaa 541 tcatggggat tgttctcagt aaaaacagca gcgattccgg gcaaaggact tcgacttcga 601 cttctgacgt gaatgaagaa aacagggtat cttcattcga gccagggcgt cgtcttgtct 661 taaacgaagt aagcggagaa ttcgctcaag aaagagacac cgagaacaca agttccccgt 721 cgccacgcaa ggaagaaagc aacgaagaat cagcagattc ttcggataag gagaatcaat 781 acccgaatca tcgtccttca agggcagacg atagtagatc tccggattct gtcgcggaaa 841 ctgaaaactt taaggattct gacgttgaaa tcggcgcaaa ctcggtagta ctttctgaat 901 cccaaattca gcacgaacag gacgaatcat tagtatctga tcctctcgaa gaagaagaag 961 aaaaagaaca cgaagaagag gtcgctagcg gtaacgagtc ggaagaaaag gatagtccga 1021 ggcaaaatag cttcgaggaa ggaacttcag gcgataataa tagcgataaa gatagtccgt 1081 cgaaagcttc aaattcttca agttcgactc caaagcggcc ttattcgggt tcagacaatc 1141 gaagctccga agaaaggacc cccaagaggc gacgtcagtc agtttcagat agcgaggaca 1201 accgccgaac tttatttact gactcggaag ataaccccat taaacagagg agattaactt 1261 accgtgaaca agtagaagcc tatagacgta gagttgacgc cggaagtaca ccaggacgga 1321 agagttcatc ttcagaagaa gaaccgccgc cgccttcgcc accatttaga tattcggaat 1381 tatattggga gcagcggcgt gcttcagacg ccgactctga acctgattcc gccttcaaat 1441 atagacctaa tgcgaattat caccgtacat caccgcgaaa ttatagtgac gaagaggaag 1501 aggaggagat cccagaaagc gataccgatc agaattcagg aggaccacta ggctataggg 1561 tagaaacccg tagtaccaat tacgagtcaa gcgaaacgtc agaagacgag gctcgcagga 1621 ggaccgtgag gcgtgtagtt cgccggcgtc gtagaccacg caatcccgaa catcgcgaac 1681 ctgagtatcg cggggaagag caaagtgaga gttcgccact accgtccagt gaatcccccg 1741 atcgccaaga caacagcgac gaaaacgaga gcgacgaaga ggagaagcgg gttatacctt 1801 caaggcgtcg cactaccgac gatcagcagc ccagcttctc aggctgggga tatctaacgt 1861 gtcgtcagga cgcagactat ttctcggaac ccaccgacgg gaagatcatc aggaagagga 1921 agtcgccatt tgaggaagaa tcctcgaatc aatcaaagag acgaccatca gaagacaccg 1981 agagcgaaga ctctgagaag gaagactctg agaaggtaga ttctgagaag gaagattctg 2041 agaaggaaga ttctgataaa gaagattctg ataaagaaga ttctgataaa gaagattctg 2101 ataaagaaga ttctgataaa gaagattctg agaaagaaga ttctgagaaa gaagattctg 2161 ataaagaaga ttcggacaac ggaggttctg ataccgagaa ggaagatcga aataccgata 2221 aacgcgattc cgataccgat aacgattcca atactgaaga tccgcaagat cccagagatt 2281 ctcaagattc ggcttctgac aacgagcagg ttcccgattc tactggggag cccgaccaag 2341 acaacgagca gtttcccgat tctaccgagg agcccgacca agacaacgag cagtttcccg 2401 attctaccga ggagcccgac caagacaagg aactaggaca gactgccgct tggaccatca 2461 cacccgatga tcccaagggc attcaagact tccaagactt cgtcctaaag caggtgcaac 2521 tgatcaatga aatcatcgag gtcggccatc aagtattcca actgggatca atagtttgcc 2581 atggtgactt tacgttcttt caaacacttt acgagcggaa agttccaata gaagaggtcg 2641 ttgagctagt ctaccggggc attctcggtg tcaaggagga gctcagggtg gcattgatag 2701 cccgccaaga tctaagcgag ccacattcga aagacatcat caggccagga gataaactag 2761 cctatttaag attggatttg ttcaataaat ttgtatcaaa agtcaatcag tccgagagga 2821 tcgtggatca acgccttctt gagctgcagg aggtacggaa acagcaggga ctactggagc 2881 agaagcagcg cgtcttggag agagtgcgcc agcagcggga acagcaccgc ctgcagcagc 2941 ttcaggtgga gcgggagcgt gaggagcgcc aggaggagga gcagcggcgc ctggagctcg 3001 aacgccactt ggagcgttgg aaggaggact tcaatcgcca gctgcgactg cagcgcgagc 3061 aggaggagat caagttgagg caagaggagg agaacaggaa gcgagaagag gagcgcagga 3121 gcaactacga cagctactac tgccaactgc cgaagcacaa gcaccgcgag cagatgcaaa 3181 acgaaatggt cagcattcca gtggctaatt tgaacggtgg cctcaaggcg gccagcagtg 3241 gatccggtgg tgtggtcggt gtggtcacct cctccggcgt tgtctcctcg gccgtgctgg 3301 ccaatgcgcc gcgtgtctat ctgacgccct cctccacatt catggccaat cgtggtcagg 3361 tggcggcggg ggcgggggcc accggaaaga ttgcaggagg gagcaacgta acttcatccg 3421 tcggcacatc ttcggccacc gccggcactg tacgctactt ttcgcaattc agcaaaatgc 3481 aaaccgccgg cggacccagt ttgcagcgta aactggccaa cggcgacacc attgtgctgg 3541 ccaacggcaa caagagtctg ttcctcagca gcagtggagg cgttggaggc gacaaggcca 3601 ccaatggcaa tagtttgcta acggccaaaa cggagcttct cgaggaggaa gtcatgcagc 3661 cgggaactgt gattgtcgac tgcgacgacg acgacgacga ggatgagaat gagaatgagg 3721 atgaggacga tgaagatggg gaggataagg atgagaagaa caacagccac actgccaaat 3781 ccagtggggt tcaacaggag cagccgttgg ctttgaccac cgcaaccaac aatgcagccg 3841 cctccgatga tgaacccgaa ctggatattg ttattaataa tgtggtatgc tccttcagcg 3901 tgggctgcca cctcaagctg cgcgaaatcg ctctccaggg ctcaaatgtc gagtaccgtc 3961 gtgagaacgg tatggtgaca atgaagctcc gccatccgta cacgacggca tccatttggt 4021 cctcgggcag gatcacgtgc actggagcca cctccgaggc aatggccaag gttgcggctc 4081 gccgctatgc gaggaccctg ggcaagctgg gatttcccac ccgctttctc aacttccgga 4141 tcgtgaatgt tctgggcacc tgcagcatgc cctgggccat caagatcgtc aatttctcgg 4201 agcgccatcg cgagaatgcg agctacgagc ccgagctgca cccgggcgtg acctacaaga 4261 tgcgcgatcc cgatcccaag gccacgctca agatcttctc caccggcagc gtgaccgtga 4321 cggcggccag cgttagccac gtggagtcgg ccattcagca catttacccg ctcgtctttg 4381 agttccgcaa gcagcgttcg ctggaggagc tgcagcatct gcgccagaag cagcacaagc 4441 aagcgggcgg tgatcccagc gaactggaga agctgatcgt tgcggagaac aaggcggccg 4501 gactggatga tatcttcctc aacacaacgg cggcgcacac gaagccctcg ccgaatgagc 4561 gtacgccggc cacatcgggc atcctcacga gcaccatcga tagcatgcag cgtttgaagc 4621 agatcgagaa ttattctcac atgatgaagc tgacgcagga ggagcgccga cacataccct 4681 tccagggtga gaaggttaac ccggcggcgg cttctacttc ggcggcagct gctgcttcgt 4741 cgggggataa tatctgtgcc aatgcccgtc gccgggccac cgagtgctgg gccaccaagc 4801 tgcagtacaa gcgtccgcgt tacaatgatc ccggcaccac gggcaccgtc aatgcctcgt 4861 caacagccgc ctcctcctca gctgcctcgt catcctcctc acaggcagcg ccacacctgc 4921 gtactaatcc tctcaagacg gccgctttgg ccaatgcccg catgcgtggc gccaaaatgc 4981 caacggtgct caagccgggc acgcgtctag cgcccatcgg cggtggctat ctgcagcacc 5041 agcagcatct gcagcagcag cagcagctgc aacagcagca gcagaagatg cgccagacca 5101 gcttctcgcc cagcgagttc gatgtggacg atttgatcga ggaggaggag agcaacgagc 5161 tggacatgca gtattgagct agccaagcag ctgcccaagc caaaaaaaca catttaaaca 5221 ttaacattta aatgatgata attcgatgga aaagaaaagc aaacagagag cttttccccg 5281 aatttgttgg cactttgttt aagccatttt tcatcacaat acaaacacac acatttattt 5341 ttgtgctcgc cgcatttaaa acacgaactc gaggaaaacc ggacgcagga gcgaaaacaa 5401 aaaaatattt aaaaacaaaa aaggatgaaa ggagaacatt ttaatccaaa gcgaaacaaa 5461 attcccagca gcaacaccaa ctaaatagca gcagcaacaa caaaaccaag agccaaatat 5521 ttaacttata agatttacgt ttaaacgact ttgtaactta agcgagcaca tctgaaacaa 5581 actagcagag ttagcatata gcgatgattt cgaacccgaa ggattcccag cagcagcagc 5641 aacctcaaga acatccagat ggtaaacaca cagagagagc ttaccacaac gtaaacctaa 5701 gtgtagactt aaagaaagcg ttatgaatac gtatatgcca gcgttttacg tatgcaacca 5761 aaaaaaacga aatgtgcgga ttgctttgaa ggaggaggag ttacaatcta tttttttttt 5821 actcggttta aatagttaat ttatgtgagc aagaccaccg cctaagcaaa tactgtaaac 5881 ccgaatggat cacatacgac ttatatatat caagatagcc tttccctttt tttttgttgt 5941 ttgaccaaga ccaagttctt ccggagcaaa ccaaaattct caagaggaaa ggagcagagg 6001 aggagaccag agaaaacact aggataatat taactgattt atttcatgta ttttcacaca 6061 cccatttaat aatttttttt gttttcgctc gtaagttcta gatgctataa gcgttgcttc 6121 atgtgaagca aaacaaacaa aaacatttga atacgattat aattatatta taataccaac 6181 acacacacaa acacctatat ctggtcacta ataaccaatt ataacaaaac tgaaaataca 6241 gcaagtaatt atgttttaat ttatgctagt agtttttggg ttgcgcagaa gaacactcaa 6301 tcgaattagg aataaacacc tggatgatag aagattgttg tagggtttat ttttaaagca 6361 accaggtgaa tgcgcgactt gaaactatta tcagacgatg tatacctaat gcatatattc 6421 gtatatatac tataaaatat attaatgttt tttttttatg taattcgcat tattcgcata 6481 atttaatgac aaatttagag gaagcaactt taagcgtaga tttacaaact tgttcctgtg 6541 ttgttaaaat cagaaagtaa agaacttatt ttagttaacg aaacttaacg aagcatacgc 6601 atacacaaac actcacacac acacacacat taacacaagc atacgtatac atatacataa 6661 tgttaaggca tccaaacaaa gcaacaaaca aacaaacaaa agagcgaatc ataagcaata 6721 atagaatgtt ttcgttgtaa agaggtaaaa actaaacaaa caaatactca cgttaaacat 6781 aaaaaataaa ctctagatgt tttggcgtgc cttcacccgt aaataggaaa aacaaaaagc 6841 gagatacgat agccaattgt acaatcattg aaatagtact tccagaccag aacgaaccca 6901 aaactctttg tacatagacc caaaattgat gttttccaat tgaacgtgaa tattgcctca 6961 tcaacttgaa atttcttttg tgcttaacgt aaaaaccaac tttcatatcg ttcaaaactt 7021 atgcataatc aaaatagcta aaacaaacaa aagagatggg gaatatttaa gagacgtaat 7081 atcatatatt tttttttata ttttttttat tttgtattct gtctttcttt gataatttat 7141 attttgattt gcataaacaa aatcgagaaa tgaaaatgcc tttagggaac aaataactag 7201 cgcggaaagg aaagagaggg gagataggtt taggtattga gaaagcgaga gatagagaga 7261 aggatattga acagatcaat tggagccgaa atgtattttt ttgtgtatgc gaatgtggat 7321 agagatagta gggataggaa taggtctcga gacagacccg aacgtgttac aattgcaaaa 7381 ttaactagcc actaagccac ttagccctaa gttagctgag aaacggaata ctaaattgta 7441 agccaaaatg catatagcaa tctaacaaaa aaaacaaaat ctaatggaac ctaacgacga 7501 gaacctaaat gtaatctaaa tgtacataaa atagttgtta acaaatcaca aaaaacaaac 7561 gaaagcaaga aaccaacaat agagtaaagt cttcacgtct aactgccttc gaaaaaacaa 7621 aaagaaagat acagaaaaag aaaaagaaag gaaaatcgga agtattctat tctaaacacc 7681 gactgtaaat tgcttgtact ttcaccacat tttctttttt gttaaagcaa cgacagcaac 7741 aacaacaaca ttaatagaac agaacagacg gatcgaaagg cctaaataag tgtatttggt 7801 ttcaagaact ttaaaaaagc aaaactaaat attaatgata gtatacagat atatttttga 7861 ttattatgta tttaatgaga acaatgtaat gaaaatgatg caagtatcga tatcgatatg 7921 ataactaaga gaaaacaaat tgagaaatca aatagcataa ttctgttttt gttttgccgt 7981 aaagactgca ttataccaac aattaattat atacaaaata ataataataa taatattaat 8041 aaatcaataa ctgataaatg gcgagtaagc gagagctttg cattgagcag agaccaaaac 8101 ggatgaataa atatatatat atatattaaa acaaccagaa aaaatattct aaaaacgaat 8161 acaaaaaaaa aaacaaaaca aacaaatatg aaagaaaaac aaaaaacatg gaaaacaaaa 8221 ccaagaaaca tttatttatt agatcctaag agaagtttcg ctagcggaga tcgagtcagg 8281 ccagagcgga ccttaaaggt accccgcatc ccagaacgaa aagcaagatg aaattacctt 8341 accaaaacgt gggcgagtct acaaaagtct ataatagggc gatagggaga atcggaataa 8401 ttagagaact atcgtatgat aaatcaatta ccaactaact ggctaactta tacccactaa 8461 gatttatagt tccccctaat ccctgaaact agttctaagt acataagttg caagcgaaaa 8521 aaaaactaaa agttagattt atacacaaaa ggatatatac atcatatata tatatatatg 8581 tggagaagga ggaaggttta ctttggtttt gagattgccg catcttcaca tctcaagcaa 8641 tacgtttgta taccatttgt tattccgaaa cgcgacggtt ttcgaaatcg ccagttttgg 8701 gcgattcgaa acatcgaaac gtttcgtagc taacacttgg atatgaatat ttaacaaaaa 8761 gccacacaaa cattaacacg acaacaacaa caacactcat ttgatgtatt tagtttaacg 8821 tttagcccct agtttcaaga aaaatcacac acgaaacaag aaaacgcaaa attcgaggaa 8881 cgtgaaaatg cctttcctga actgcagtca acactcaaat atatggcaac aaaaaaacaa 8941 caaaaatgag aaaagaaaca aaccaaccaa atgaaagcaa attgtttgaa taaaaatcaa 9001 attacataaa