transcription elongation factor SPT6 [Drosophila takahashii].

LOCUS       XP_017016253            1863 aa            linear   INV 09-DEC-2024
ACCESSION   XP_017016253
VERSION     XP_017016253.2
DBLINK      BioProject: PRJNA1194641
DBSOURCE    REFSEQ: accession XM_017160764.3
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 18, 2021 this sequence version replaced XP_017016253.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1863
                     /organism="Drosophila takahashii"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     Protein         1..1863
                     /product="transcription elongation factor SPT6"
                     /calculated_mol_wt=210511
     Region          317..418
                     /region_name="HTH_44"
                     /note="Helix-turn-helix DNA-binding domain of SPT6;
                     pfam14641"
                     /db_xref="CDD:464230"
     Region          547..1145
                     /region_name="Tex"
                     /note="Transcriptional accessory protein Tex/SPT6
                     [Transcription]; COG2183"
                     /db_xref="CDD:441786"
     Region          794..948
                     /region_name="RuvC-like"
                     /note="Crossover junction endodeoxyribonuclease RuvC and
                     similar proteins; cl21482"
                     /db_xref="CDD:473878"
     Region          952..1055
                     /region_name="HHH_5"
                     /note="Helix-hairpin-helix domain; cl22429"
                     /db_xref="CDD:473956"
     Region          <1244..1297
                     /region_name="S1"
                     /note="S1 RNA binding domain; pfam00575"
                     /db_xref="CDD:425760"
     Region          1325..1535
                     /region_name="SH2_2"
                     /note="SH2 domain; pfam14633"
                     /db_xref="CDD:464227"
     CDS             1..1863
                     /gene="Spt6"
                     /coded_by="XM_017160764.3:128..5719"
                     /db_xref="GeneID:108070334"
ORIGIN      
        1 maefldseae eseeeeeldv nerkklkklk aavsdsseee eddeerlree lkdliddnpi
       61 eeddgsgdds dtksggeteg ggsgkkrkkh edddlddrle dddydlieen lgvkverrkr
      121 fkrlrrihdn esdgeeqhvd eglareqiae qlfdendesv ehrserspre adafdeedse
      181 sdaddfivdd ngrpiaekkk krrpiftdas lqegqdifgv dfdyddfsky eedeyeddse
      241 gdeydeelga gddmrvkkkk alkkkvakkt ifdiyepsel krghftdmdn eirktdiper
      301 mqlrqvpvtp vpegsheldl eadwiykyaf ckqtvseqek aenreklrkp ptavnkikqt
      361 lefirnqqle vpfiafyrke yvkpelnidd lwkvyyyder wcqlnerkrk lkvlfekmrq
      421 fqldtlcadp ekpipddvrl mldsdferld dvqsmeelkd vhmyfllnys helprmqaeq
      481 rrkviqerre akarrqataa asaengdgde saaivipepe ededdpelid dqlkqapnss
      541 pyavfrkagi cgfakhfglt peqfaenlrd nyqrnevtqe slgptelakq ylsprfmttd
      601 evlhaakyvv arqlaqepll rktmrevyfd rarlnirptk ngmvlidens pvysmkyvak
      661 kpvgdlfgdq fiklmmaeee klleitflee fegnanangp pgdyveeska lyhldqfskh
      721 vlewnalrae cvklalqkwv ipdlikelrs tlheeaqqfv lrsctgklyk wlkvapykpe
      781 lptdygyeew stlrgirvls laydpdqsva afcavttveg disdylrlpn ilkrknshna
      841 eekaqkladl rklsdfikmk kphivvigae srdaqniqtd ikeilqelvs aeqfppieve
      901 iidnelakiy anskkgesdf keypallkqa vslarkmqdp lveysqlcda ddeilclryh
      961 plqervpreq lleqlslqfi nrtsevgldi nlmvqnsrtv nllqytcglg prkgqallkl
     1021 lkqsnqrlen rtqlvtvchl gpkvfincsg fikidtsslg dsteayvevl dgsrvhpety
     1081 ewarkmaida meyddeetnp agaleeiles perlkdldld afavelerqg fgsksitlyd
     1141 irnelsclyk dyrtpytkps aeelfdmltk etpdsfyvgk cvtamvtgft yrrpqgeqld
     1201 nanpvriess dswqcpfchk ddfpelsevw nhfdanacpg qasgvrvrle nglpgfihik
     1261 nlsdkqvrnp eervrvsqmi hvriikidid rfsvdcsskt adlkdvnnew rprrdnfydf
     1321 vteeqdnrka sdakakalkr ktyarrviah psffnksyae vvamlaeadq gevalrpssk
     1381 skdhltatwk vaddifqhid vreegkendy slgrslwigt eefedldeii arhinpmala
     1441 areliqykyy kpntaaanan erdfmeqvlr deksldpkki hyfftasrsm pgkfllsylp
     1501 ktkvrheyvt vmpegyrfrg qifdsvnsll rwfkehwldp taspatgsta snstpllham
     1561 rpppaissss saagggssss lgsqapysit gsvtggtprs gisssggggs ssaysvshsi
     1621 vgyssssgga paaaaaashy gssstpsfga iintpytpsg qtpfmtpytp hasqtprygh
     1681 nvpspssqss ssqrhhygss sgtgstpryy dmgggggggg gvggsnaynm pphhqqrake
     1741 nldwqlanda warrrpppqq hhqqhhhpqq qmgmnmnmgm gmnmgmgggg ggggygstpg
     1801 ndynsghnrg mgmgmgmnqg hgppggggss smsskasvrs tprtntsphs mnlgdatply
     1861 den