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LOCUS XM_017160764 6108 bp mRNA linear INV 09-DEC-2024 Spt6 (Spt6), mRNA. ACCESSION XM_017160764 VERSION XM_017160764.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160764.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6108 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6108 /gene="Spt6" /note="transcription elongation factor Spt6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108070334" CDS 128..5719 /gene="Spt6" /codon_start=1 /product="transcription elongation factor SPT6" /protein_id="XP_017016253.2" /db_xref="GeneID:108070334" /translation="MAEFLDSEAEESEEEEELDVNERKKLKKLKAAVSDSSEEEEDDE ERLREELKDLIDDNPIEEDDGSGDDSDTKSGGETEGGGSGKKRKKHEDDDLDDRLEDD DYDLIEENLGVKVERRKRFKRLRRIHDNESDGEEQHVDEGLAREQIAEQLFDENDESV EHRSERSPREADAFDEEDSESDADDFIVDDNGRPIAEKKKKRRPIFTDASLQEGQDIF GVDFDYDDFSKYEEDEYEDDSEGDEYDEELGAGDDMRVKKKKALKKKVAKKTIFDIYE PSELKRGHFTDMDNEIRKTDIPERMQLRQVPVTPVPEGSHELDLEADWIYKYAFCKQT VSEQEKAENREKLRKPPTAVNKIKQTLEFIRNQQLEVPFIAFYRKEYVKPELNIDDLW KVYYYDERWCQLNERKRKLKVLFEKMRQFQLDTLCADPEKPIPDDVRLMLDSDFERLD DVQSMEELKDVHMYFLLNYSHELPRMQAEQRRKVIQERREAKARRQATAAASAENGDG DESAAIVIPEPEEDEDDPELIDDQLKQAPNSSPYAVFRKAGICGFAKHFGLTPEQFAE NLRDNYQRNEVTQESLGPTELAKQYLSPRFMTTDEVLHAAKYVVARQLAQEPLLRKTM REVYFDRARLNIRPTKNGMVLIDENSPVYSMKYVAKKPVGDLFGDQFIKLMMAEEEKL LEITFLEEFEGNANANGPPGDYVEESKALYHLDQFSKHVLEWNALRAECVKLALQKWV IPDLIKELRSTLHEEAQQFVLRSCTGKLYKWLKVAPYKPELPTDYGYEEWSTLRGIRV LSLAYDPDQSVAAFCAVTTVEGDISDYLRLPNILKRKNSHNAEEKAQKLADLRKLSDF IKMKKPHIVVIGAESRDAQNIQTDIKEILQELVSAEQFPPIEVEIIDNELAKIYANSK KGESDFKEYPALLKQAVSLARKMQDPLVEYSQLCDADDEILCLRYHPLQERVPREQLL EQLSLQFINRTSEVGLDINLMVQNSRTVNLLQYTCGLGPRKGQALLKLLKQSNQRLEN RTQLVTVCHLGPKVFINCSGFIKIDTSSLGDSTEAYVEVLDGSRVHPETYEWARKMAI DAMEYDDEETNPAGALEEILESPERLKDLDLDAFAVELERQGFGSKSITLYDIRNELS CLYKDYRTPYTKPSAEELFDMLTKETPDSFYVGKCVTAMVTGFTYRRPQGEQLDNANP VRIESSDSWQCPFCHKDDFPELSEVWNHFDANACPGQASGVRVRLENGLPGFIHIKNL SDKQVRNPEERVRVSQMIHVRIIKIDIDRFSVDCSSKTADLKDVNNEWRPRRDNFYDF VTEEQDNRKASDAKAKALKRKTYARRVIAHPSFFNKSYAEVVAMLAEADQGEVALRPS SKSKDHLTATWKVADDIFQHIDVREEGKENDYSLGRSLWIGTEEFEDLDEIIARHINP MALAARELIQYKYYKPNTAAANANERDFMEQVLRDEKSLDPKKIHYFFTASRSMPGKF LLSYLPKTKVRHEYVTVMPEGYRFRGQIFDSVNSLLRWFKEHWLDPTASPATGSTASN STPLLHAMRPPPAISSSSSAAGGGSSSSLGSQAPYSITGSVTGGTPRSGISSSGGGGS SSAYSVSHSIVGYSSSSGGAPAAAAAASHYGSSSTPSFGAIINTPYTPSGQTPFMTPY TPHASQTPRYGHNVPSPSSQSSSSQRHHYGSSSGTGSTPRYYDMGGGGGGGGGVGGSN AYNMPPHHQQRAKENLDWQLANDAWARRRPPPQQHHQQHHHPQQQMGMNMNMGMGMNM GMGGGGGGGGYGSTPGNDYNSGHNRGMGMGMGMNQGHGPPGGGGSSSMSSKASVRSTP RTNTSPHSMNLGDATPLYDEN" misc_feature 1076..1381 /gene="Spt6" /note="Helix-turn-helix DNA-binding domain of SPT6; Region: HTH_44; pfam14641" /db_xref="CDD:464230" misc_feature 1766..3562 /gene="Spt6" /note="Transcriptional accessory protein Tex/SPT6 [Transcription]; Region: Tex; COG2183" /db_xref="CDD:441786" misc_feature 2507..2971 /gene="Spt6" /note="Crossover junction endodeoxyribonuclease RuvC and similar proteins; Region: RuvC-like; cl21482" /db_xref="CDD:473878" misc_feature 2981..3292 /gene="Spt6" /note="Helix-hairpin-helix domain; Region: HHH_5; cl22429" /db_xref="CDD:473956" misc_feature <3857..4018 /gene="Spt6" /note="S1 RNA binding domain; Region: S1; pfam00575" /db_xref="CDD:425760" misc_feature 4100..4732 /gene="Spt6" /note="SH2 domain; Region: SH2_2; pfam14633" /db_xref="CDD:464227" polyA_site 6108 /gene="Spt6" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 taaacatcca gctctatttg acacttcttg gtttttttta ttgtgactct gcaagcgacg 61 ttttttgtgc attactttta gttagattcg tttttaagcc tatagtttaa ttgtttaatt 121 tattgtgatg gccgaatttc tggactccga ggccgaggaa tcggaggagg aggaagaatt 181 ggacgtgaac gagcgcaaga agctcaagaa gctgaaagcc gccgtctcgg acagcagcga 241 agaagaagaa gatgacgagg agcgcctgcg cgaggagctc aaggatctga tcgacgacaa 301 tcccatcgag gaggatgacg gcagcggcga tgactcggac accaagagcg gtggcgagac 361 cgaaggcggc ggcagcggca agaagcgcaa aaagcacgag gacgacgatc tggacgatcg 421 gctggaggac gacgactacg atctgattga ggagaacttg ggcgtcaaag tagagagacg 481 gaagcggttc aagcgcctgc gtcgcatcca cgacaacgaa agcgatggcg aggagcagca 541 cgtggacgag ggtcttgccc gggagcagat cgccgagcag ctgttcgacg agaacgacga 601 gagcgttgag catcgcagcg agcgaagtcc ccgggaggcg gatgccttcg acgaggagga 661 ctcggaatcg gatgcggatg atttcatagt ggacgacaat gggcgtccca tagccgagaa 721 gaaaaagaag cgtcgtccca tctttacaga tgcttccctg caagagggcc aggacatctt 781 tggcgtggac tttgactacg acgatttctc caagtacgag gaggatgagt acgaggacga 841 ctccgagggc gatgaatacg acgaggagct cggcgccggc gatgatatgc gcgtgaaaaa 901 gaagaaggct ttgaaaaaga aggtggccaa gaagacaatc ttcgacatat acgagccgag 961 cgaactgaag cgcggccact tcaccgacat ggacaacgag atccgcaaga cggacatacc 1021 ggagcgcatg cagctgcgcc aggtgcccgt aaccccagtg cccgagggtt cccatgagct 1081 agacctcgag gccgattgga tctacaagta tgcgttctgc aaacagaccg tttccgagca 1141 ggagaaggcc gagaatcgcg agaaattgcg caaaccgccg acggcggtga acaaaatcaa 1201 gcagacgctc gaattcatac gcaaccagca gctggaggtg cccttcatag ccttctatcg 1261 caaggagtat gtcaagccgg agctgaatat cgatgatctg tggaaggttt actactacga 1321 cgagcgctgg tgccagctaa acgagcgtaa gcgcaagcta aaggtgctct tcgagaagat 1381 gcgccagttc cagttggaca cactgtgcgc cgatccggag aaacccattc ccgatgatgt 1441 gcgcctaatg ctggacagcg atttcgagcg gctggacgat gtgcagtcga tggaggagct 1501 gaaggatgtg catatgtact ttctgctcaa ctattcgcat gaattgccgc gcatgcaggc 1561 ggagcagcgg cgtaaggtca ttcaggagcg tcgcgaggcc aaggcgcgtc gccaagccac 1621 cgcagctgct tccgctgaga acggcgatgg cgatgagagt gcagccatag tgattcccga 1681 gccggaggag gatgaagacg atccagagct aatcgacgac cagctgaagc aggcgcctaa 1741 tagcagtccc tatgcggttt tccgcaaggc gggcatctgt ggctttgcca agcactttgg 1801 cctcacgccc gagcagtttg ccgagaatct gcgcgacaat tatcagcgca acgaggtcac 1861 ccaggagagt ctcggtccca cggagctggc caagcagtat ctatcgcctc gcttcatgac 1921 caccgacgag gtgctgcatg cggccaagta tgtggtggcc cgccagctcg cccaggagcc 1981 cctgctccgc aaaacgatgc gcgaggttta cttcgatcga gcgcgtttga atataagacc 2041 cactaagaat ggaatggtgc ttatcgatga gaattcaccc gtttactcca tgaaatatgt 2101 ggccaagaag ccggtgggcg atctatttgg cgatcagttc atcaaactga tgatggccga 2161 ggaggagaag ctgctggaga tcacgttcct cgaggaattc gagggcaatg ccaatgccaa 2221 tgggccaccg ggcgattatg tggaggaatc gaaggctttg taccatttgg atcagttctc 2281 taagcatgtt ctggagtgga atgccttgcg tgcggagtgc gttaagctgg cgctgcagaa 2341 gtgggtcatt ccggatctga tcaaggagct gcgctccacg ctgcacgagg aggcgcagca 2401 gtttgtgctg cgttcctgca cggggaagct ttataaatgg ctgaaagtgg cgccctataa 2461 gccggagttg cccacggact atggctacga ggagtggagc acactgaggg gcataagggt 2521 attatcctta gcctacgatc ccgaccaatc ggtggccgcc ttttgcgccg tcacgaccgt 2581 cgagggcgac atctcggact acctgcgact gccgaatatc ctcaagcgca agaattcgca 2641 caatgccgag gagaaggccc agaaattggc cgatctgcgc aagctaagtg actttatcaa 2701 gatgaaaaag ccgcatattg tggtaattgg cgctgaatcg cgcgatgcgc agaacattca 2761 gacggacatc aaggagatac tgcaggagct cgtttcggcc gaacagtttc cgcccatcga 2821 ggtggagatc atcgacaacg agctggccaa gatctatgcg aattcgaaga agggcgagtc 2881 ggatttcaag gagtatcctg cgttgctaaa acaggctgtt tccctggccc gcaaaatgca 2941 ggatccgctg gtggaatact cgcaactgtg cgacgccgac gatgagattc tctgcctgcg 3001 ctatcatccg ctgcaggagc gagtgccacg cgagcagctg ctggagcagc tgagcctgca 3061 gttcatcaat cggacgagcg aagtgggcct cgacattaat ctaatggtgc agaactcgcg 3121 gacggtcaac ctgctgcagt acacctgcgg tttgggaccg cgcaaagggc aggctttgct 3181 caaactgctc aagcagagca accagcggct ggagaatcgc acacagctgg tcaccgtctg 3241 ccatttgggt ccgaaagtct ttatcaattg cagtggcttc atcaagattg acacctcgtc 3301 gctgggcgac agcacggagg cgtatgtgga ggtgctagat ggatcgcgag tccacccgga 3361 gacttacgag tgggccagaa agatggccat cgatgcgatg gagtacgacg acgaggagac 3421 caatccggcg ggggcgctcg aggagattct agagtcaccg gagcgcctca aggatctcga 3481 tctggatgct ttcgcagtgg agttggagcg tcagggtttc ggcagcaaga gcatcacact 3541 gtacgacatc aggaacgagt tgagctgcct gtacaaggac taccgaacgc cgtataccaa 3601 accgagtgca gaggagctct tcgacatgct gaccaaggag acgccggact cgttctatgt 3661 tggaaaatgt gtaacagcca tggtgacagg ctttacctat cgtcgtccgc aaggcgagca 3721 gctggacaat gcgaatccgg tgcgaatcga gtcgagcgac agctggcagt gtcccttctg 3781 ccacaaggat gactttcccg agctctcgga ggtgtggaat cactttgatg ccaatgcctg 3841 tcccggtcag gcttctggag tgagagtgcg tctggagaat ggccttccgg gctttataca 3901 catcaagaat ctgtccgata agcaggtgcg caatcccgag gagcgtgtac gcgtctccca 3961 gatgatccat gtgcgcatca ttaagatcga cattgatcgg ttctccgtcg actgctcctc 4021 gaagacggcg gatctgaagg atgtgaataa cgagtggcgg ccgcgaaggg ataacttcta 4081 cgactttgtc accgaggagc aggacaatcg caaggccagc gatgccaagg cgaaggcgtt 4141 gaagcgaaag acctacgccc gtcgtgtcat cgcgcatccc agcttcttca acaagtcgta 4201 tgccgaggtg gtcgcaatgc tagcggaggc ggatcaggga gaggtagccc tgcgaccgag 4261 cagcaagtcc aaggatcact tgacagccac ctggaaggtg gccgacgaca tcttccagca 4321 catcgatgtg cgcgaggagg gcaaggagaa tgactatagt ttgggaagga gtttatggat 4381 tggcaccgag gagtttgagg atctggacga gatcatcgcc cgtcacatca acccaatggc 4441 tttggctgcc cgcgaactga tacagtacaa gtactataag cccaatacgg cggctgcgaa 4501 tgcgaatgag cgggacttta tggaacaggt gctgcgcgat gagaagagct tagatcccaa 4561 gaagatacac tacttcttca ccgcctcgcg cagcatgccg ggcaaattcc tgctctccta 4621 tctgcccaag acaaaggtgc gtcacgaata tgtgaccgtg atgcccgagg gctatcgttt 4681 taggggacaa atctttgatt cggtcaacag tttgttgaga tggtttaagg agcactggct 4741 ggatcccacg gcctcgccgg ccactggatc cacggcctcg aattcaacgc ccctgctcca 4801 tgcgatgcgt ccgccgccgg ccatctcctc gtcctcctcc gccgccggcg gcggctcctc 4861 ctcctcgctg ggctcccagg cgccgtacag cattacgggc agcgtgacgg gcggcacgcc 4921 acgcagcggg attagcagtt ccggtggtgg aggatcctcc tctgcctact ccgtatcgca 4981 ttccattgtg ggctatagct cctcctcagg cggagctcct gctgctgcgg ctgctgcctc 5041 gcattatggc agttcatcga cgccttcctt cggggccatc atcaatacac cttacacgcc 5101 cagcggacag acgcccttca tgacgcccta cacgccgcat gcctcgcaga cgccgcgcta 5161 cggccacaat gtgccgagtc ccagctcgca gtcgtcgagc agccagcggc atcactacgg 5221 cagcagttcc ggcacgggca gcacacctag atattatgat atgggaggag gtggaggcgg 5281 tggaggagga gttggcggtt ccaatgccta caacatgccg ccgcatcacc agcaacgtgc 5341 caaagagaac ctcgactggc agctggccaa cgatgcctgg gcaagacgca ggccaccgcc 5401 gcagcagcat catcagcagc atcatcatcc gcagcagcag atgggcatga acatgaacat 5461 gggaatgggc atgaacatgg gaatgggagg aggcggagga ggaggaggct atggatcgac 5521 gcctggaaac gactacaaca gcggacacaa tcgaggaatg ggaatgggaa tgggcatgaa 5581 ccaaggccac ggaccacctg gcggcggcgg atcctcatcc atgtcctcaa aggcatccgt 5641 gcgcagcact ccacgcacca acacctcacc ccactccatg aatctgggcg atgccacgcc 5701 cctgtacgac gagaactaac gaaaccctat gctaaacaca taaactaaac taaaaaaaac 5761 aacaaactac aagtcgagaa cagaacagaa ccgaacagaa cagcctacaa taataataaa 5821 acagaaagaa agaagaaaca gaaacatgcg cagctggcgg agaagcagtt gcattaatct 5881 tagaaagttg cagtgcgatt tcgcattgat cctcaacgat atttacgttt aagagccagt 5941 ctttaactga ttcgcggtac atatatatat acctatatat atatatccta catataatcg 6001 aagttcatcc gagggacccg gaggagctgg gatggcagga agaggagcaa tcaggtttgt 6061 gacgacggaa ggacgacaaa ataaatttga attttttctg accagaaa