DNA ligase 4 [Drosophila takahashii].

LOCUS       XP_017016094             913 aa            linear   INV 09-DEC-2024
ACCESSION   XP_017016094
VERSION     XP_017016094.2
DBLINK      BioProject: PRJNA1194641
DBSOURCE    REFSEQ: accession XM_017160605.3
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 18, 2021 this sequence version replaced XP_017016094.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Drosophila takahashii"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     Protein         1..913
                     /product="DNA ligase 4"
                     /calculated_mol_wt=103751
     Region          84..608
                     /region_name="dnl1"
                     /note="DNA ligase I, ATP-dependent (dnl1); TIGR00574"
                     /db_xref="CDD:273147"
     Region          242..461
                     /region_name="Adenylation_DNA_ligase_IV"
                     /note="Adenylation domain of DNA Ligase IV; cd07903"
                     /db_xref="CDD:185713"
     Site            order(275..278,280..282,297,335,346,371,431,434,436,452,
                     454)
                     /site_type="active"
                     /db_xref="CDD:185713"
     Site            order(277,280..282,296..298,300,302,350..351,354..356,431,
                     454,456)
                     /site_type="DNA binding"
                     /note="DNA binding site [nucleotide binding]"
                     /db_xref="CDD:185713"
     Region          665..755
                     /region_name="BRCT"
                     /note="C-terminal domain of the breast cancer suppressor
                     protein (BRCA1) and related domains; cl00038"
                     /db_xref="CDD:469589"
     Region          823..912
                     /region_name="BRCT_2"
                     /note="BRCT domain, a BRCA1 C-terminus domain; pfam16589"
                     /db_xref="CDD:465186"
     CDS             1..913
                     /gene="DNAlig4"
                     /coded_by="XM_017160605.3:40..2781"
                     /db_xref="GeneID:108070215"
ORIGIN      
        1 msadiastik frdicdlfek lkatrkvank eevlksyyes fcrhresfrr qtgltddqae
       61 ngvssfysvl rlllpgadtg rdtyglqita lgrlyikvlq lpgdsrdalm lqhrsgnmyr
      121 dygdvvyavl kprcsnppsd lrlqhihaml dtiasedtev kkqqlvrfte qaspeeqkwl
      181 irlllkslgl gigeqkifgv lhpraqdiyq rcsdlghvcn lladrgsdld dskaavkfvn
      241 lnavirpfhq irpmlcerfp gdiqelmqsd vlymetkmdg erfqlhiegg rfmyisrngv
      301 dytrnfgrdy dhgtltpklr sllplglesi ildgemmvwd tsqlrfrekg entdvknlkp
      361 egswqpcfvv ydllyfngqs lldhsyvqra yklhkmlveq pgvlqlmrgr kigsvaefne
      421 lfqqaldaha egivlkkqgs tyqpgvrlgg gwykdkadyi kglitefdvl iigafynrkr
      481 tfvdsfllgv lqpappgsas rpevfsigvv tnntkqrgvl nhtlkphwhd vikeppplwf
      541 hykpkeragc pdlwiephns iilqvkaadl apngafftrk slhfprtetk rddkpwsecm
      601 tlqefndlca gstaikklnk rqlrledvtt krkqlrmtps ersrlglavy ekrcavdpaa
      661 sssqlfdgls fcvlsgsagr qskqqlqelv aqnggciven plpndpkcfc iagdetflvr
      721 rlclqeprtc nilrmewllr vcqrqelelk pkdllaatep lqrdlaecfd llgdsynkdi
      781 asveelqell kdiqltpens ceiiaaevna ledqlldgek klnlfrhlha yfydplgdel
      841 gkllflqngg kladefdpql nlgfvcmssd ldndkfdhwl snhstlsadk vlnsawihqs
      901 hregqllpms afv