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LOCUS XM_017160605 2869 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017160605 VERSION XM_017160605.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160605.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2869 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2869 /gene="DNAlig4" /note="DNA ligase 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108070215" CDS 40..2781 /gene="DNAlig4" /codon_start=1 /product="DNA ligase 4" /protein_id="XP_017016094.2" /db_xref="GeneID:108070215" /translation="MSADIASTIKFRDICDLFEKLKATRKVANKEEVLKSYYESFCRH RESFRRQTGLTDDQAENGVSSFYSVLRLLLPGADTGRDTYGLQITALGRLYIKVLQLP GDSRDALMLQHRSGNMYRDYGDVVYAVLKPRCSNPPSDLRLQHIHAMLDTIASEDTEV KKQQLVRFTEQASPEEQKWLIRLLLKSLGLGIGEQKIFGVLHPRAQDIYQRCSDLGHV CNLLADRGSDLDDSKAAVKFVNLNAVIRPFHQIRPMLCERFPGDIQELMQSDVLYMET KMDGERFQLHIEGGRFMYISRNGVDYTRNFGRDYDHGTLTPKLRSLLPLGLESIILDG EMMVWDTSQLRFREKGENTDVKNLKPEGSWQPCFVVYDLLYFNGQSLLDHSYVQRAYK LHKMLVEQPGVLQLMRGRKIGSVAEFNELFQQALDAHAEGIVLKKQGSTYQPGVRLGG GWYKDKADYIKGLITEFDVLIIGAFYNRKRTFVDSFLLGVLQPAPPGSASRPEVFSIG VVTNNTKQRGVLNHTLKPHWHDVIKEPPPLWFHYKPKERAGCPDLWIEPHNSIILQVK AADLAPNGAFFTRKSLHFPRTETKRDDKPWSECMTLQEFNDLCAGSTAIKKLNKRQLR LEDVTTKRKQLRMTPSERSRLGLAVYEKRCAVDPAASSSQLFDGLSFCVLSGSAGRQS KQQLQELVAQNGGCIVENPLPNDPKCFCIAGDETFLVRRLCLQEPRTCNILRMEWLLR VCQRQELELKPKDLLAATEPLQRDLAECFDLLGDSYNKDIASVEELQELLKDIQLTPE NSCEIIAAEVNALEDQLLDGEKKLNLFRHLHAYFYDPLGDELGKLLFLQNGGKLADEF DPQLNLGFVCMSSDLDNDKFDHWLSNHSTLSADKVLNSAWIHQSHREGQLLPMSAFV" misc_feature 289..1863 /gene="DNAlig4" /note="DNA ligase I, ATP-dependent (dnl1); Region: dnl1; TIGR00574" /db_xref="CDD:273147" misc_feature 763..1422 /gene="DNAlig4" /note="Adenylation domain of DNA Ligase IV; Region: Adenylation_DNA_ligase_IV; cd07903" /db_xref="CDD:185713" misc_feature order(862..873,877..885,928..930,1042..1044,1075..1077, 1150..1152,1330..1332,1339..1341,1345..1347,1393..1395, 1399..1401) /gene="DNAlig4" /note="active site" /db_xref="CDD:185713" misc_feature order(868..870,877..885,925..933,937..939,943..945, 1087..1092,1099..1107,1330..1332,1399..1401,1405..1407) /gene="DNAlig4" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:185713" misc_feature 2032..2304 /gene="DNAlig4" /note="C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains; Region: BRCT; cl00038" /db_xref="CDD:469589" misc_feature 2506..2775 /gene="DNAlig4" /note="BRCT domain, a BRCA1 C-terminus domain; Region: BRCT_2; pfam16589" /db_xref="CDD:465186" polyA_site 2869 /gene="DNAlig4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttaaaaaatg gtgaaattgt ttattattat taagccaaaa tgagcgctga tatagccagc 61 acgatcaagt tccgcgacat ctgcgacctg ttcgagaagc tgaaggccac caggaaggtg 121 gccaacaagg aggaggtgct gaagagctac tacgagtcct tctgccgcca ccgcgagtcc 181 tttcgccggc aaacgggcct gaccgacgac caggcggaga acggggtcag tagcttctat 241 tcggtgctcc gcctgctgct ccccggggcg gacacaggtc gggacaccta tggcctgcag 301 atcaccgccc tgggcaggct gtacatcaag gtgctgcagc tcccaggcga ttcgcgagat 361 gccctcatgc tgcagcaccg cagcggtaac atgtaccgcg actacggcga cgtcgtctac 421 gccgtcctca agccgcggtg ctccaatccg cccagcgatc tgcgcctgca gcacatccac 481 gcgatgctgg acacgatcgc cagcgaggac acggaggtca agaagcagca gctcgtccgt 541 ttcaccgagc aggcctcgcc cgaggagcag aagtggctta tccggctgct gctcaagagc 601 cttggcctgg gcatcggcga gcagaagatc ttcggggtgc tgcacccgag ggcgcaggac 661 atctaccagc gctgctccga tttgggacac gtgtgcaatc tgctcgcgga taggggcagc 721 gacctggacg acagcaaggc agccgtgaag ttcgtgaacc tgaacgccgt catccggcca 781 ttccatcaga tacgacccat gctctgcgaa cgatttcccg gcgacatcca ggagctgatg 841 cagtcggatg tgctctacat ggagaccaaa atggacggcg agcgcttcca gctgcacatc 901 gagggcggcc gcttcatgta catctcccgg aacggcgtgg actacacgcg caactttgga 961 cgcgactacg atcacggcac tctgacgccc aagctgagga gcctgctgcc cctgggcctg 1021 gagtccatca tcctggacgg cgagatgatg gtgtgggaca ccagccagct gcgcttccgc 1081 gagaagggcg agaacacgga cgtgaagaac ctgaagcccg agggcagctg gcagccctgc 1141 ttcgtggtct acgatctgct gtacttcaat ggccagagcc tgctcgacca cagctacgtg 1201 cagcgggcgt acaagctgca caagatgctc gtcgagcagc cgggcgtgct gcagctgatg 1261 cgcggccgca agatcggctc cgtcgcggag ttcaacgagc tcttccagca ggcactcgac 1321 gcccacgccg agggcattgt gctgaagaag cagggctcca catatcagcc gggcgtgagg 1381 ctgggcggtg ggtggtacaa ggataaggcg gattacatca agggtctgat caccgagttc 1441 gatgtgctga tcattggcgc cttctacaac cgcaagcgca ccttcgtgga ctcctttctg 1501 ctgggagttc tccagccagc gccgcccggc agcgccagtc ggccggaggt cttcagcatc 1561 ggcgtggtca cgaacaacac gaagcagcga ggagtgttaa atcacacgct aaagccgcat 1621 tggcatgatg tgattaagga gccgccgccg ctgtggtttc actacaagcc caaggagcgc 1681 gccggatgcc ccgatctctg gatcgagccg cacaactcga tcatcctgca ggtgaaggcc 1741 gccgatttgg cgccaaatgg agctttcttc acccgcaaat cgctgcactt tccgcgcacc 1801 gaaacgaagc gcgacgacaa gccgtggagc gagtgcatga ccctgcagga gttcaacgac 1861 ctgtgcgccg gatccacggc catcaagaag ctgaacaagc ggcagctgcg cctagaggat 1921 gtaacgacca agcgcaagca gctgcggatg acgccctcgg agcggagtcg cctcggattg 1981 gccgtctatg agaaacgctg tgcggtggac ccggcggcga gcagctccca gttgttcgac 2041 ggcctcagct tttgcgtact gagcggatcg gccgggcggc agagcaagca gcagctgcag 2101 gagctggtcg cccagaacgg cggctgcatc gtggagaacc cgctgcccaa cgatcccaag 2161 tgcttttgca ttgccggcga cgagacgttt ctggtccggc gactctgcct tcaggagccg 2221 cgcacctgca acattctgcg catggagtgg ctgctgaggg tctgccagcg gcaggagctc 2281 gaactcaagc ccaaggatct gctggcggcc actgagccgt tgcagcggga tctggccgag 2341 tgcttcgacc ttctgggcga tagctacaac aaggatattg ccagtgtgga ggagctgcag 2401 gaactgctaa aggatattca gcttacacca gagaattcct gcgagattat cgctgctgag 2461 gtgaatgctc tggaggatca gctgctggac ggcgagaaga aactgaatct attccgccac 2521 ctgcatgcct acttctacga tccgcttggc gatgagctcg gcaagcttct gttcctgcaa 2581 aacggcggca aactggccga cgaatttgat ccgcagctga atctgggctt cgtctgcatg 2641 tcttctgacc tggacaacga taagtttgac cactggctga gtaaccattc cacgctgagc 2701 gccgacaaag tcttgaactc tgcctggatc catcagtcgc atcgggaggg ccaactcctg 2761 cccatgagtg cgtttgtcta gaatctagct ttatattttg tttataacaa gttaattact 2821 gttatcttag taataaaaat aaatgtatct aactatattg acaataaaa