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LOCUS XP_017012897 3770 aa linear INV 09-DEC-2024 ACCESSION XP_017012897 VERSION XP_017012897.2 DBLINK BioProject: PRJNA1194641 DBSOURCE REFSEQ: accession XM_017157408.3 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 18, 2021 this sequence version replaced XP_017012897.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..3770 /organism="Drosophila takahashii" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" Protein 1..3770 /product="cubilin homolog" /calculated_mol_wt=419152 Region 20..154 /region_name="cubilin_NTD" /note="N-terminal domain of cubilin and similar proteins; cd22201" /db_xref="CDD:412063" Site order(32,34,36,38..47,49..57,59..64,69,72..73,75..76, 79..80,82..83,86..87,115..116,119,122..123,126,129..130, 133) /site_type="other" /note="trimer interface [polypeptide binding]" /db_xref="CDD:412063" Site 32..36 /site_type="other" /note="tetramer interface [polypeptide binding]" /db_xref="CDD:412063" Region 161..195 /region_name="EGF_CA" /note="Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the...; cd00054" /db_xref="CDD:238011" Region 197..237 /region_name="EGF_CA" /note="Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the...; cd00054" /db_xref="CDD:238011" Site order(197,200,219) /site_type="other" /note="Ca2+ binding site [ion binding]" /db_xref="CDD:238011" Region 287..327 /region_name="EGF_CA" /note="Calcium-binding EGF-like domain; smart00179" /db_xref="CDD:214542" Site order(287,290,306) /site_type="other" /note="Ca2+ binding site [ion binding]" /db_xref="CDD:238011" Region 329..372 /region_name="EGF_CA" /note="Calcium-binding EGF-like domain; smart00179" /db_xref="CDD:214542" Site order(329,332,350) /site_type="other" /note="Ca2+ binding site [ion binding]" /db_xref="CDD:238011" Region 435..468 /region_name="EGF_CA" /note="Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the...; cd00054" /db_xref="CDD:238011" Region <477..509 /region_name="EGF_CA" /note="Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the...; cd00054" /db_xref="CDD:238011" Region 516..629 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(524,526,528,555,560,600,624,626,628..629) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 634..744 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(643,645,647,674,679,715,739,741,743..744) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 751..856 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cl00049" /db_xref="CDD:412131" Site order(759,761,763,790,795,833,853,855,857) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 865..976 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(868,870,872,899,904,946,971,973,975..976) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 984..1101 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(993,994,996,1024,1029,1072,1096,1098,1100..1101) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 1107..1218 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(1115,1117,1119,1146,1151,1189,1213,1215,1217..1218) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 1223..1336 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(1233,1235,1262,1267,1307,1331,1333,1335..1336) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 1454..1555 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(1455,1457,1459,1486,1491,1528,1552,1554) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 1562..1675 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(1570,1572,1574,1601,1606,1646,1672,1674) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 1800..1907 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(1808,1810,1812,1839,1844,1881,1904,1906) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 1908..2007 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cl00049" /db_xref="CDD:412131" Site order(1916,1918,1923,1950,1955,1985,2003,2005,2007) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 2027..2144 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Region 2151..2263 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(2160,2162,2164,2191,2196,2237,2258,2260,2262..2263) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 2270..2387 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(2279,2284,2286,2313,2318,2361,2385,2387) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 2393..2526 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cl00049" /db_xref="CDD:412131" Site order(2401,2403,2405,2440,2445,2495,2521,2523,2525..2526) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 2531..2653 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(2541,2543,2570,2575,2624,2648,2650,2652..2653) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region <2856..2913 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cl00049" /db_xref="CDD:412131" Region 2920..3030 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(2929,2931,2956,2962,3002,3026,3028,3030) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 3033..3149 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(3043,3045,3047,3076,3081,3121,3144,3146,3148..3149) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 3152..3263 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Region 3276..3385 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(3282,3284,3286,3313,3318,3356,3380,3382,3384..3385) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 3390..3529 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cd00041" /db_xref="CDD:238001" Site order(3399,3405,3407,3434,3439,3503,3527,3529) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" Region 3554..3622 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cl00049" /db_xref="CDD:412131" Region 3644..3754 /region_name="CUB" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; cl00049" /db_xref="CDD:412131" Site order(3652,3654,3656,3683,3688,3727,3751,3753) /site_type="other" /note="heterodimerization interface [polypeptide binding]" /db_xref="CDD:238001" CDS 1..3770 /gene="Cubn" /coded_by="XM_017157408.3:87..11399" /db_xref="GeneID:108068043" ORIGIN 1 mkgsarsrll lclaifiitd iwpfaegfvn spkiiskdgn lifesganrn isfrlsgnsr 61 ltineefdvm ellmatgggk krpngpkdew ntgedfvdvr eladqmadfk rrvfgvngld 121 atlrlqtnrt rgslalmrrf qtrlravenk vdrmktqlet nscasgpcen ggtcyntfng 181 frcqcraafe gtkcevdvne calyegtdlg cqnggqcqnq fgsysclcqp gwhgmhcsqr 241 kadcsqssaw elcghgscip sadsagyrcl cepgwksngv tpvcgedvde csdsaayrpc 301 stkcinlpgs ftcapcaagl tgngiscrdl decqtnnggc slspkvdcin tygsyhcgec 361 plgwtgdgrk cersaedfdi qtgqrprscp asnnpcypta scflisgtat crcpvgmvgs 421 gygpsgcvng tttncagnpc lndgicldag psnftclcps gfkqpicepm aspcdlhpck 481 nggrcrptvg atgdgfvcqc mpgyrgrlcd trfsscngml aapsgrlkyp pegtgyehna 541 qcawvirtne slvvnvtfns fdvedstecr fdwlqindgr saaaqiigry cgnhlphggn 601 ivssgnqlyl wfrsdnstar egfdlswnsm qpqcggrlef ethgtlaspg spgnypknrd 661 crwqlvaptn krikltffsl qleqhdscnf dyvkikdtis grelaqycts gapaplllat 721 hlaeihfhsd adggdtgfql hysveervpg cggvytakqg tisesstans epggvsceye 781 ihlavgeqia iqfvrlqlep qdclevldvt degasslqek icgsdaarln ppaftsqfnr 841 lkikfyarsg afqlnyrmac dlkldsaegt ltspgypnls rsdrlctyti rtasntvinl 901 kridfqlndg esldddpgcp ttnlrindgl nrqilgpfcg knqpaeifvs qtnflqfhlt 961 tdadssgrgf kfeyqsvsag sdkcggvhtl sgehirlpes saghyaddan cywvimapan 1021 kairlhwlsf dleesldcsf dfveiydsls aqqndekakp laklcgshlp edlvshsrql 1081 vikfvsdyse sdggfelsys feergncggh ihassgelts pdypanyssg ldcdwhltgt 1141 lghlleiqle nfaleessnc sadyleirng gadtspligr fcggnipari psfshemrlh 1201 lhtdsaingr gfrlrwrvaa fgcggnlrsn mgaisspryp nsyphlshce wrisvhpgsa 1261 vsllvddmdv eglsscyyds vkiyagikqp nqtpdkvmcg sdqknqliql etseatvafd 1321 tdssnagrgf risfkancvr nltattgtie slnymepfwe tipincswti rapkgnrirl 1381 evshlerhea eqhmpstqmp gglyimdgkn iesiiapgal nasgevltvv hnasfvnfql 1441 dyridgclqe lrgesgsfds pnrphmypnd lecywlitvq rdsiieltif nmdleesvnc 1501 tkdaltvsnh kysvadherh cgstdklvit saghrlhvrf qsdgshnglg fsatyktvka 1561 tcggkisarn gviespnypq sypvsshcew qvevsphhqi vfemqnldle sgydcnwdyl 1621 egydlaeddt egqqlfkvcg deeqdtairk satnlavvrf isddsvsrkg frlhfhescg 1681 qtvtiddtdf eyvemsrqap rnetclfvfq sqepnkhiif tpthvklree aesryptegd 1741 clqmgvkiye gteakgtprl qfcrshppal isngqalais vplllveefa ghymtmdtac 1801 gslynalsgr ftspyypasy ppniectwll easagnsisl allsmdleks dgcnrdylev 1861 reetengkli gvycgnevpg vihssgsiwm kfksdddnvg egfmasynye hhnelngtdg 1921 aiesphypsk fqdtdpyswr itvekeyvva isvdhlrdvd qphlrfydgy sdigariemm 1981 gleepilsst nvvyltasrg pfrltwerls kealrsnrta eeqtrlcggr qlitidrsai 2041 gfhspgypng ydnglkcswt lvpsdpavha iftlshldle vfggpndcia dyvrissggd 2101 lqnwselarl ctlptapner ifhgkpylrv efttdpsvnr tgfnglvrtg cgseitatqg 2161 qvnitevlrl nprvnqdcvw tikvrqgrri kidfpdfqlq nsaandcrnf lmlrngnded 2221 spflgrgkyc edvaneilnt tsnrayvkfh yaspprflmt frfeelghac sgriqltsss 2281 dekiistpyy phlphphsec iwivqappeh rivlhfqggf dlveadgetr ecqreyvlvn 2341 dgstelkhei grycgnrkpd siystgnqlr iryytdvsep hmgfnaslkl arcggsfhgs 2401 egviaspprd llqihhgqee gkqleecvyt ielekgstie letefmqipr langscsqrn 2461 hlrleemdaf agsdgeeqee kvvddltvcg nekhrllset nkivfryrfm dgipaenqgf 2521 rftykslgsr cgetinanvg vlqtpgypmg vdhpmhcvwh vevakgrrvr leildfnmgn 2581 rnvsegwrtp maygfghfrg rltvandfkm qsilgrytad ppaevmssdn tmgidafllp 2641 tgqtrgiklr fsasgfsrcq qfgiqrdvtt eivfqpvnvs ipihcsykie plvnstimiq 2701 vkqynsssvm mrnthlcsll splrinrvdq vehlmqrilc nyqaptpgkp lpsirvpfpi 2761 qlvvssnnrn slsslvlsyn mqscggvyil epgdnmtlsq ptgmaeiqgp idcawaigsy 2821 adavnddevv pqdiqlevtv rgvnlptppl apgsteeacq hhylkvyngp dqnspslglf 2881 cnqpaavnvv verglffeyh sdsfapnatf nvsvkygsgc ggkltypyra idfseqyknn 2941 veciweveaa sgyhigltfq grfyiedsag cakdyllvqq rnessgnwtd lqricgrvap 3001 eminttspyl rlifrsdgdv vgdgflakfe rncggllyad deernlsspg fpvsyekdlq 3061 cnwtivprdp lsggvlvsfl qfdleqapis vclfdnvtvv tkdkdrdpeq viicgvkhnh 3121 eyrakesisl ifktdssysg rgfqvryssr lcggvisrtg vvqsprqhtd nnlppgsdcy 3181 wnltapvgyk fivkfelldf ephtncaydg veifagsipd erqrrgrfcg rmneelpvis 3241 ipqergiihs ysderdpsrg frafvrimqn cdekislngs tryvyskfyn pegydfgldc 3301 hvvfrvntdq qisvqfshfh vqqsddcskd yvelrdgagp fadiigrfcg qdqpptlsts 3361 rhtlflrfvt dtrvtdsgfe vtinavprlc gsseialsse rqevtidspa rtpggnyang 3421 vacfwrikgd tplrmnfvsf dlhgpdangs cvedylkvyn sedaeqveqg fgselvfngq 3481 tsghnhfdfa tehvycgnvr pdtyyanane vylrfrskgl eqrsgfqvqv glnskserhy 3541 dglqgrvhls qtddcditir apvnhtlsly ytelifgtyd cqteymevfd rqnkslqrfc 3601 sfvdvgkslf sysdelrlhm ktgsfltsld ltylaspvek gpgcggqfyn tegifanpfy 3661 panvrnnsec qwivrvpsnn kvflnfevfn lgskttchtd ylqvlekdea geevevrrfc 3721 gednpkyyks qrsqvvvrfh ktvnydgvgw virfngvysn yqipryllgg