nuclear RNA export factor 1 [Drosophila takahashii].

LOCUS       XP_017002287             687 aa            linear   INV 09-DEC-2024
ACCESSION   XP_017002287
VERSION     XP_017002287.3
DBLINK      BioProject: PRJNA1194641
DBSOURCE    REFSEQ: accession XM_017146798.3
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XP_017002287.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Drosophila takahashii"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     Protein         1..687
                     /product="nuclear RNA export factor 1"
                     /calculated_mol_wt=77523
     Region          122..200
                     /region_name="Tap-RNA_bind"
                     /note="Tap, RNA-binding; pfam09162"
                     /db_xref="CDD:462696"
     Region          224..264
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275382"
     Region          <261..>324
                     /region_name="LRR"
                     /note="Leucine-rich repeat (LRR) protein [Transcription];
                     COG4886"
                     /db_xref="CDD:443914"
     Region          265..290
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275382"
     Region          291..314
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275382"
     Region          315..345
                     /region_name="leucine-rich repeat"
                     /note="leucine-rich repeat [structural motif]"
                     /db_xref="CDD:275382"
     Region          381..541
                     /region_name="NTF2"
                     /note="Nuclear transport factor 2 (NTF2) domain plays an
                     important role in the trafficking of macromolecules, ions
                     and small molecules between the cytoplasm and nucleus.
                     This bi-directional transport of macromolecules across the
                     nuclear envelope requires many...; cd00780"
                     /db_xref="CDD:238403"
     Site            order(409,415,453,478,480..481,490,524,534..536,538,540)
                     /site_type="active"
                     /note="TAP/p15 interaction [active]"
                     /db_xref="CDD:238403"
     Site            order(413,415..416,475..476,478,480..481,488,492..494,498,
                     500..502,515,518,524,534..536,538..541)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:238403"
     Site            order(416..417,465,470,493,495,497..498,500,515,537,539,
                     541)
                     /site_type="active"
                     /note="RanGDP-NTF2 interaction [active]"
                     /db_xref="CDD:238403"
     Region          624..686
                     /region_name="TAP_C"
                     /note="C-terminal domain of vertebrate Tap protein;
                     smart00804"
                     /db_xref="CDD:197882"
     Site            order(648,652,655..656,658..661,666,670,674,679,681)
                     /site_type="other"
                     /note="peptide binding site [polypeptide binding]"
                     /db_xref="CDD:270527"
     CDS             1..687
                     /gene="sbr"
                     /coded_by="XM_017146798.3:517..2580"
                     /db_xref="GeneID:108060878"
ORIGIN      
        1 mpkrgggggg grgggdgggq rynnnvgngg grysaledfd evedrqrrkd rnkrrvsfkp
       61 sqfphnkkdi klrpedlrrw dedddmsdmt ttvkqdrpts rrrgspiprg kfgklmpnsf
      121 gwyqvtlqna qiyeketllr allaamsphv fipqywraer ncvifftddy evaeriqhlg
      181 rhaqlpdgyr lmprvrsgip lvaiddafke kmkvtmakry nvqtkaldls rfhadpelkl
      241 ifcplfrqnv msaaidiicd nipdleainl ndnsmtsmea fkgvekripn lkilylgdnk
      301 ipslahlvvf rnlsilelvl knnpcrsryk dsqhfisevr rkfpkllkld gealapqvtf
      361 dlteqgrile tkasflcdna gaevvrqfld qyfrifdses rqslldayhe namlsitmps
      421 anqagrlnsf wkfnrnlrrl vngednrtrh lkygrlacvs tldewprtlh errtftvdlt
      481 ifntsmmvft vtglfkelng easasgsmsm qyelrhfart yvvvpqntgy cirnetifit
      541 nasqeqvref krsqhqpapg smaststsat atspqqqqpg ttgglqgrln pvgvatgpva
      601 ilpgnplaat spvnsgsaal svgavapgvq dentkmqmiq amsaqsqmnv lwsrkcleet
      661 nwdynhaafv feqlfkenki ppeafvk