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LOCUS XM_017146798 2988 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017146798 VERSION XM_017146798.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017146798.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2988 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2988 /gene="sbr" /note="small bristles; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108060878" CDS 517..2580 /gene="sbr" /codon_start=1 /product="nuclear RNA export factor 1" /protein_id="XP_017002287.3" /db_xref="GeneID:108060878" /translation="MPKRGGGGGGGRGGGDGGGQRYNNNVGNGGGRYSALEDFDEVED RQRRKDRNKRRVSFKPSQFPHNKKDIKLRPEDLRRWDEDDDMSDMTTTVKQDRPTSRR RGSPIPRGKFGKLMPNSFGWYQVTLQNAQIYEKETLLRALLAAMSPHVFIPQYWRAER NCVIFFTDDYEVAERIQHLGRHAQLPDGYRLMPRVRSGIPLVAIDDAFKEKMKVTMAK RYNVQTKALDLSRFHADPELKLIFCPLFRQNVMSAAIDIICDNIPDLEAINLNDNSMT SMEAFKGVEKRIPNLKILYLGDNKIPSLAHLVVFRNLSILELVLKNNPCRSRYKDSQH FISEVRRKFPKLLKLDGEALAPQVTFDLTEQGRILETKASFLCDNAGAEVVRQFLDQY FRIFDSESRQSLLDAYHENAMLSITMPSANQAGRLNSFWKFNRNLRRLVNGEDNRTRH LKYGRLACVSTLDEWPRTLHERRTFTVDLTIFNTSMMVFTVTGLFKELNGEASASGSM SMQYELRHFARTYVVVPQNTGYCIRNETIFITNASQEQVREFKRSQHQPAPGSMASTS TSATATSPQQQQPGTTGGLQGRLNPVGVATGPVAILPGNPLAATSPVNSGSAALSVGA VAPGVQDENTKMQMIQAMSAQSQMNVLWSRKCLEETNWDYNHAAFVFEQLFKENKIPP EAFVK" misc_feature 880..1116 /gene="sbr" /note="Tap, RNA-binding; Region: Tap-RNA_bind; pfam09162" /db_xref="CDD:462696" misc_feature 1186..1308 /gene="sbr" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275382" misc_feature <1297..>1488 /gene="sbr" /note="Leucine-rich repeat (LRR) protein [Transcription]; Region: LRR; COG4886" /db_xref="CDD:443914" misc_feature 1309..1386 /gene="sbr" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275382" misc_feature 1387..1458 /gene="sbr" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275382" misc_feature 1459..1551 /gene="sbr" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275382" misc_feature 1657..2139 /gene="sbr" /note="Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many...; Region: NTF2; cd00780" /db_xref="CDD:238403" misc_feature order(1741..1743,1759..1761,1873..1875,1948..1950, 1954..1959,1984..1986,2086..2088,2116..2124,2128..2130, 2134..2136) /gene="sbr" /note="TAP/p15 interaction [active]" /db_xref="CDD:238403" misc_feature order(1753..1755,1759..1764,1939..1944,1948..1950, 1954..1959,1978..1980,1990..1998,2008..2010,2014..2022, 2059..2061,2068..2070,2086..2088,2116..2124,2128..2139) /gene="sbr" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238403" misc_feature order(1762..1767,1909..1911,1924..1926,1993..1995, 1999..2001,2005..2010,2014..2016,2059..2061,2125..2127, 2131..2133,2137..2139) /gene="sbr" /note="RanGDP-NTF2 interaction [active]" /db_xref="CDD:238403" misc_feature 2386..2574 /gene="sbr" /note="C-terminal domain of vertebrate Tap protein; Region: TAP_C; smart00804" /db_xref="CDD:197882" misc_feature order(2458..2460,2470..2472,2479..2484,2488..2499, 2512..2514,2524..2526,2536..2538,2551..2553,2557..2559) /gene="sbr" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:270527" polyA_site 2988 /gene="sbr" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgataggccg ttccgaaaga accgaaggga aaacaacact caacaataat ccttggaaca 61 ctgaatttta cctgttcctt tttgttttcc tgcttcgttg ccttcgcaaa actacctttt 121 tttccgggaa cagcagccgg gaaaactcgg aaatcctccg tcaatttgtg caaaaaccat 181 cgggccgtgt ctatcgaaag cggatcgctc gtcactagag tcactaaaat aagtgtttaa 241 tttcataaaa ttgcgttgta tgtggattgt tgagaccagg caaagcgaat tattccaacg 301 agtatataaa gtgtgaggaa ctccagcgta tttcgcaaag cattctcggc actttgtgcg 361 ttttgcattt tttgcgcaaa aaaaaacaca agataggctg attttcacaa caacaaaaac 421 aaagaacgat agtgcaaaaa acgtgctgaa gaaagcattt ttttttctac ccatccgttg 481 ttgttgcctc ataaatttgt aaggaaaaat cggaaaatgc ccaaacgcgg tggcggcggc 541 ggcggcggaa gaggcggcgg cgacggcggt ggccagcggt acaacaacaa cgtcggcaat 601 ggcggcggac gttactcggc gctcgaggat ttcgatgaag tggaggatcg tcagcgacgc 661 aaggatcgta acaaacggcg cgtcagcttt aagccctcgc agtttccgca caacaaaaag 721 gacatcaagc tgcgtcccga ggatctgcgc cgctgggacg aggatgatga catgagcgac 781 atgaccacaa ccgtcaagca ggatagaccc acctcccgac gacgaggatc gcccattccg 841 cgcggcaagt tcggcaaact gatgcccaac agctttggct ggtaccaagt gacgctacaa 901 aatgcacaga tttacgaaaa ggaaaccctt ttgcgggcct tattggcggc aatgtcgccg 961 catgtcttca taccgcaata ttggcgagcg gaacgcaatt gcgtgatctt cttcaccgac 1021 gactacgagg tggccgagcg cattcaacat ctgggcaggc acgcccagct acccgatggc 1081 tataggctga tgccgcgcgt gcgcagcggc attccgctgg tggccatcga cgatgccttc 1141 aaggagaaga tgaaggtgac catggccaag cggtacaatg tgcagaccaa ggcactcgac 1201 ctctcccgct tccatgccga tccggagctc aagctgatct tttgcccgct cttccggcag 1261 aacgtgatga gcgccgccat cgatattatc tgcgataata tacccgatct ggaggcgatc 1321 aacctgaatg acaacagcat gaccagcatg gaggccttca agggcgtgga gaagcggata 1381 ccgaacctca agatactcta tttgggggat aataagatac catcactggc ccacctggtg 1441 gtgtttcgca acctgtctat tttggagctg gtcttaaaga acaatccctg ccgttcccgc 1501 tacaaggact cgcagcactt tatcagcgaa gtacgtcgca agttccccaa actgctgaag 1561 ttggatggag aggccctggc gccgcaggtc acctttgatc taaccgagca gggacgcatt 1621 ctcgagacga aggcctcctt cctgtgcgac aacgctggcg ccgaggtggt gcgtcagttc 1681 ctggaccagt acttccgcat ttttgattcg gagagccgac agtccctgct ggatgcctac 1741 cacgaaaacg cgatgctgtc cataacgatg ccgtcggcca atcaggcggg aaggctgaac 1801 agcttctgga agttcaatcg caacctgcga cgcctggtga acggcgaaga caaccgcacg 1861 cggcacttga agtacggacg gctggcctgc gtttccacgt tggacgagtg gccaaggacg 1921 ctgcacgagc gtcgcacctt caccgtcgac ctgaccatat tcaatacttc catgatggta 1981 ttcacggtga cgggattgtt caaggagctg aacggcgagg ccagcgcctc cggctcgatg 2041 tcgatgcagt acgagctgcg ccactttgcc cgcacctacg tggtggtgcc gcagaacacc 2101 ggctattgca tccgcaacga gaccatcttc atcacgaacg cctcgcagga gcaggtgcgt 2161 gagttcaagc ggtcgcagca ccagccggct cccggttcca tggccagcac atcgacaagt 2221 gccacggcga ccagtccgca gcagcagcag ccagggacga ctgggggtct gcagggtcgt 2281 ctcaatccgg tgggcgtggc aaccgggccg gtggccattc tgccaggaaa tccgctggca 2341 gccacctcac cggtgaacag cggcagtgcc gccttatcag tgggtgcagt ggcgcctggc 2401 gtgcaggatg agaacaccaa aatgcagatg atacaggcga tgagtgcgca aagccaaatg 2461 aacgtgctct ggagtcgcaa atgcttggag gagacgaatt gggactataa ccatgccgca 2521 ttcgttttcg agcaactctt caaggaaaac aaaattccgc ccgaggcttt tgtcaagtaa 2581 ttctcattcg acatttgacc agaagcagca agggggaaaa acagagcaga gccaagtgcc 2641 acgtatacag aatcaaatgt tttgtttatt tgttttcgtt ttgtaattaa atacttttta 2701 atattttttt ttagagtcac atctaaattg taataaaacg ctgagttagt tgtgcgcaca 2761 ttgtcgagcc acaatgatcg cagccccttg ataggtatat ttaactcgct ttaagttccg 2821 tccgcagatc ccctggacca agacccttct ggcttgagcg ccaggacgaa gagtctgcga 2881 acggttgccc cctttagaat ttagaactgt tttatagccc taagcacgta caagaaaata 2941 tacatcaaaa tcctgtatgc aacaatgttg ttgaaaataa cgcaaaaa