ribosomal RNA small subunit methyltransferase NEP1 [Drosophila

LOCUS       XP_017002217             252 aa            linear   INV 09-DEC-2024
            takahashii].
ACCESSION   XP_017002217
VERSION     XP_017002217.2
DBLINK      BioProject: PRJNA1194641
DBSOURCE    REFSEQ: accession XM_017146728.2
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 18, 2021 this sequence version replaced XP_017002217.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Drosophila takahashii"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     Protein         1..252
                     /product="ribosomal RNA small subunit methyltransferase
                     NEP1"
                     /calculated_mol_wt=28287
     Region          43..246
                     /region_name="Nep1-like"
                     /note="18S rRNA (pseudouridine(1248)-N1)-methyltransferase
                     Nep1; cd18088"
                     /db_xref="CDD:349961"
     Site            order(67..68,84,86,90,93..94,97,99,132,185,228,230,
                     232..233,235..236,239..240,243)
                     /site_type="other"
                     /note="dimer interface [polypeptide binding]"
                     /db_xref="CDD:349961"
     Site            order(176..178,208..209,211..212,214,225..228,230..232,
                     234,237)
                     /site_type="other"
                     /note="SAM binding site [chemical binding]"
                     /db_xref="CDD:349961"
     CDS             1..252
                     /gene="LOC108060834"
                     /coded_by="XM_017146728.2:72..830"
                     /db_xref="GeneID:108060834"
ORIGIN      
        1 mggqgktinr krkfvgrkad dpefdldkkq fkvlhlnate krliivlega qletvkvhnt
       61 fellncddha gimrknqrdp gscrpdithq cllmlfdspl nragllqvfv rtehnvliei
      121 npqtriprtf krfaglmvql lhkfqirand ssrrlmsvik npitdhvpvg ckkyamsfsg
      181 klvancrdlv phgeegseky depvviviga fahgvlktdy teelfsisny plsaaiacsk
      241 lcsafeevwg vv