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LOCUS XP_016996242 522 aa linear INV 09-DEC-2024 ACCESSION XP_016996242 VERSION XP_016996242.2 DBLINK BioProject: PRJNA1194641 DBSOURCE REFSEQ: accession XM_017140753.3 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Oct 18, 2021 this sequence version replaced XP_016996242.1. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## COMPLETENESS: full length. FEATURES Location/Qualifiers source 1..522 /organism="Drosophila takahashii" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" Protein 1..522 /product="protein ultraspiracle" /calculated_mol_wt=55741 Region 105..181 /region_name="NR_DBD_RXR" /note="DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers; cd06956" /db_xref="CDD:143514" Site order(107,110,124,127,143,149,159,162) /site_type="other" /note="zinc binding site [ion binding]" /db_xref="CDD:143514" Site order(112,153..154,156,158) /site_type="other" /note="RXR/ECR heterodimer interface [polypeptide binding]" /db_xref="CDD:143514" Site order(116..119,125..126,128,130,132..133,136,144,156..157, 160,163,176..178,180..181) /site_type="DNA binding" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143514" Site order(138,161,164..165,168..169,173..175,179..181) /site_type="other" /note="RXR/PPAR heterodimer interface [polypeptide binding]" /db_xref="CDD:143514" Site order(154..155,158) /site_type="other" /note="RXR/RXR homodimer interface DR1 [polypeptide binding]" /db_xref="CDD:143514" Site 175..180 /site_type="other" /note="RXR/RXR homodimer interface DR2 [polypeptide binding]" /db_xref="CDD:143514" Site order(179,181) /site_type="other" /note="RXR/RAR heterodimer interface [polypeptide binding]" /db_xref="CDD:143514" Region 250..494 /region_name="NR_LBD_RXR_like" /note="The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily; cd06943" /db_xref="CDD:132741" Site order(294..295,297..298,301,335,339,342,380..381,396,486, 489..490) /site_type="other" /note="ligand binding site [chemical binding]" /db_xref="CDD:132741" Site order(303,306,310,315,320..321,323..324,328) /site_type="other" /note="coactivator recognition site [polypeptide binding]" /db_xref="CDD:132741" Site order(402,406,410,427,433,447..448,451..452,455,469..470, 473..474,476..478,480..481,484,488) /site_type="other" /note="heterodimer interface [polypeptide binding]" /db_xref="CDD:132741" Site order(402,406,410,433,435,444,451,455,467,470..471, 474..477,480..481,484,488) /site_type="other" /note="homodimer interface [polypeptide binding]" /db_xref="CDD:132741" CDS 1..522 /gene="usp" /coded_by="XM_017140753.3:454..2022" /db_xref="GeneID:108056775" ORIGIN 1 mdnncdqdas frlshikeev kpdisqlnds nnssfspkae spgpfmqams mvhvlpnsgs 61 gsgssnnnsg ggdsqmaqap nsaaaaaaav qqqyppnhpl sgskhlcsic gdrasgkhyg 121 vyscegckgf fkrtvrkdlt yacrenrnci idkrqrnrcq ycryqkcltc gmkreavqee 181 rqrgarnaag rlaasggggg gsgtgslggs sggggggggg gaggggsgmp pgsgngsead 241 fmgnsgvard fsierileae qraetqsgdr altflrvgpy stvqpdykga vsalcqvvnk 301 qlfqmveyar lmphfaqvpl ddqvillkaa wiellianva wcsivslddg gggggggggg 361 ghdgsferrs pglqpqqlfl nqsfsyhrns aikagvsaif drilselsvk mkrlnldrre 421 laclkaiily npdirgiknr aeiemcrekv yacldehcrl ehpgddgrfa qlllrlpalr 481 sislkcqdhl flfritsdrp leelfleqle appppglamk le