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LOCUS XM_017140753 2577 bp mRNA linear INV 09-DEC-2024 (usp), mRNA. ACCESSION XM_017140753 VERSION XM_017140753.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017140753.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2577 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2577 /gene="usp" /note="retinoid X receptor ultraspiracle; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins" /db_xref="GeneID:108056775" CDS 454..2022 /gene="usp" /codon_start=1 /product="protein ultraspiracle" /protein_id="XP_016996242.2" /db_xref="GeneID:108056775" /translation="MDNNCDQDASFRLSHIKEEVKPDISQLNDSNNSSFSPKAESPGP FMQAMSMVHVLPNSGSGSGSSNNNSGGGDSQMAQAPNSAAAAAAAVQQQYPPNHPLSG SKHLCSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLTYACRENRNCIIDKRQRNRCQ YCRYQKCLTCGMKREAVQEERQRGARNAAGRLAASGGGGGGSGTGSLGGSSGGGGGGG GGGAGGGGSGMPPGSGNGSEADFMGNSGVARDFSIERILEAEQRAETQSGDRALTFLR VGPYSTVQPDYKGAVSALCQVVNKQLFQMVEYARLMPHFAQVPLDDQVILLKAAWIEL LIANVAWCSIVSLDDGGGGGGGGGGGGHDGSFERRSPGLQPQQLFLNQSFSYHRNSAI KAGVSAIFDRILSELSVKMKRLNLDRRELACLKAIILYNPDIRGIKNRAEIEMCREKV YACLDEHCRLEHPGDDGRFAQLLLRLPALRSISLKCQDHLFLFRITSDRPLEELFLEQ LEAPPPPGLAMKLE" misc_feature 766..996 /gene="usp" /note="DNA-binding domain of retinoid X receptor (RXR) is composed of two C4-type zinc fingers; Region: NR_DBD_RXR; cd06956" /db_xref="CDD:143514" misc_feature order(772..774,781..783,823..825,832..834,880..882, 898..900,928..930,937..939) /gene="usp" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:143514" misc_feature order(787..789,910..915,919..921,925..927) /gene="usp" /note="RXR/ECR heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:143514" misc_feature order(799..810,826..831,835..837,841..843,847..852, 859..861,883..885,919..924,931..933,940..942,979..987, 991..996) /gene="usp" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143514" misc_feature order(865..867,934..936,943..948,955..960,970..978, 988..996) /gene="usp" /note="RXR/PPAR heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:143514" misc_feature order(913..918,925..927) /gene="usp" /note="RXR/RXR homodimer interface DR1 [polypeptide binding]; other site" /db_xref="CDD:143514" misc_feature 976..993 /gene="usp" /note="RXR/RXR homodimer interface DR2 [polypeptide binding]; other site" /db_xref="CDD:143514" misc_feature order(988..990,994..996) /gene="usp" /note="RXR/RAR heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:143514" misc_feature 1201..1935 /gene="usp" /note="The ligand binding domain of the retinoid X receptor and Ultraspiracle, members of nuclear receptor superfamily; Region: NR_LBD_RXR_like; cd06943" /db_xref="CDD:132741" misc_feature order(1333..1338,1342..1347,1354..1356,1456..1458, 1468..1470,1477..1479,1591..1596,1639..1641,1909..1911, 1918..1923) /gene="usp" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:132741" misc_feature order(1360..1362,1369..1371,1381..1383,1396..1398, 1411..1416,1420..1425,1435..1437) /gene="usp" /note="coactivator recognition site [polypeptide binding]; other site" /db_xref="CDD:132741" misc_feature order(1657..1659,1669..1671,1681..1683,1732..1734, 1750..1752,1792..1797,1804..1809,1816..1818,1858..1863, 1870..1875,1879..1887,1891..1896,1903..1905,1915..1917) /gene="usp" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:132741" misc_feature order(1657..1659,1669..1671,1681..1683,1750..1752, 1756..1758,1783..1785,1804..1806,1816..1818,1852..1854, 1861..1866,1873..1884,1891..1896,1903..1905,1915..1917) /gene="usp" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:132741" polyA_site 2577 /gene="usp" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tggtgagttg ctccgccgtg gtgagttagt ctttgttgag aaaaaatgtc gacgcgaaaa 61 aaggttttaa tgcattagtc agaaagtctg gcattcttag tttgttgcta aaactaaaaa 121 gcgcaattgt ttggcatttt ggcggcgagc gagaccagtg cgcggctcca gcggcccaag 181 attatgtaaa tgcagcccgt ggccccagcg gcgaactgca aataaacagc aagcaaagcg 241 agctgctctg ctccacttgg ccccatccac ttggtcgaaa aagcgagcgg acggacggac 301 ggaacggaca cggtggcgtt ggcaaagtga aacccccaca cggagagaga aagagagaga 361 gagggaggtg aaagcacaca cacactcgca ctcgcaagcg aagaagagcg ctagcaaaag 421 agaaaccccg aggaggagca tccgcatccc acgatggaca acaactgcga ccaggacgcc 481 agcttccggc tgagccacat caaggaggag gtcaagccgg acatctcgca gctgaacgac 541 agcaacaaca gcagcttctc gccgaaggcc gagagtcccg gtcccttcat gcaggccatg 601 tccatggtcc acgtcctgcc caactcaggc tcaggctcag gctccagcaa taacaacagt 661 ggcggcggtg actcgcagat ggcgcaggcg cccaattccg ccgccgctgc agccgctgca 721 gtgcagcagc agtatccgcc caaccatccg ctgagcggca gcaagcacct gtgctccatc 781 tgcggcgacc gggccagcgg caagcactac ggcgtgtaca gctgcgaggg ctgcaagggc 841 ttcttcaagc gcacggtgcg caaggatctc acatacgcgt gccgcgagaa ccgcaactgc 901 atcatcgaca agcggcagcg gaaccgctgc cagtactgcc gctaccagaa gtgcctcacc 961 tgcggcatga agcgcgaggc ggtgcaggag gagcgtcagc gtggcgcccg caatgcggca 1021 ggcaggctgg cggccagcgg aggaggcggc gggggcagcg gtaccggctc cctgggcggc 1081 tccagcggag gtggcggtgg aggaggagga ggaggagctg gcggcggagg atccgggatg 1141 ccccctggca gcggcaacgg ctccgaggcc gacttcatgg gcaacagcgg cgtggccagg 1201 gacttctcca tcgagcgcat cctggaggcc gagcagcgcg ccgagacgca gagcggcgac 1261 cgggcgctga ccttcctgcg cgtcggcccc tactccaccg tgcagccgga ctacaagggc 1321 gccgtgtccg ccctgtgcca ggtggtcaac aagcagctct tccagatggt cgagtacgcg 1381 cgcctgatgc cccatttcgc ccaggtgccg ctggacgacc aggtgatcct gctgaaggcc 1441 gcctggatcg agctgctcat cgcgaacgtg gcctggtgca gcatcgtctc gctggacgat 1501 ggcggtggag gaggaggagg aggaggaggc ggcggccacg acggctcctt cgagcggcgc 1561 tcgccggggc tgcagccgca gcagctgttc ctcaaccaga gcttctcgta ccatcgcaac 1621 agcgccatca aggccggcgt ctcggccatc ttcgaccgca tcctctccga gctgagcgtg 1681 aagatgaagc gcctgaatct ggaccgacgc gagctggcct gcctgaaggc gatcatactg 1741 tacaacccgg acatacgcgg catcaagaac cgggcggaga tcgagatgtg ccgcgagaag 1801 gtgtacgcct gcctggacga gcactgtcgt ctggagcacc ccggcgacga cggacgcttc 1861 gcgcagctgc tgctgcgcct gcccgcgctg cgctcgatca gtttgaagtg ccaggaccac 1921 ctgttcctct tccgcatcac cagcgaccgg ccgctggagg agctcttcct cgagcagctg 1981 gaggcgccgc cgccgcctgg gctggcaatg aaactggagt aggcattgtg attgcgtttg 2041 ttggcatttc tcctctctat atcctctccc ccccacgata tcctccaaaa gcccctctaa 2101 tattacgcta aatgtgtatg taattgttta ttttttttta ttacctaata ttattattat 2161 tgatgtagaa aatgttttcc ttaagatgaa gattagcctc ctcgacgttt atgtccccgt 2221 aaacgaaaaa caaacaaaat ccaaaacttg aaaagaacac aaaacacgaa aaaagagaag 2281 aagcacacaa gcaagtaaaa gtaaaagtta aaagtaaaag ttaaactaaa gctaaatata 2341 taaaggttaa aattaatgaa tagttacgat ctacagacgt atgtaaacat acaagttcgg 2401 tatacatatg catatatgtc ggcaggcgca tttctgcggt gctggccccg ttctaaatca 2461 attgtaatta ctttttaaca taattgtacc caggcgttat taattacatg cgagatacaa 2521 aacagacgaa aagcaacaaa aattatctat gtataaaata taaactgcat aacaaga