exosome complex component RRP4 [Stomoxys calcitrans].

LOCUS       XP_013110750             298 aa            linear   INV 02-SEP-2023
ACCESSION   XP_013110750
VERSION     XP_013110750.1
DBLINK      BioProject: PRJNA1009844
DBSOURCE    REFSEQ: accession XM_013255296.2
KEYWORDS    RefSeq.
SOURCE      Stomoxys calcitrans (stable fly)
  ORGANISM  Stomoxys calcitrans
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Muscoidea; Muscidae; Stomoxys.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_081555) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_963082655.1-RS_2023_08
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 08/29/2023
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Stomoxys calcitrans"
                     /db_xref="taxon:35570"
                     /chromosome="4"
     Protein         1..298
                     /product="exosome complex component RRP4"
                     /calculated_mol_wt=33127
     Region          29..66
                     /region_name="ECR1_N"
                     /note="Exosome complex exonuclease RRP4 N-terminal region;
                     pfam14382"
                     /db_xref="CDD:464162"
     Region          78..169
                     /region_name="S1_Rrp4"
                     /note="Rrp4 S1-like RNA-binding domain. S1-like
                     RNA-binding domains are found in a wide variety of
                     RNA-associated proteins. Rrp4 protein is a subunit of the
                     exosome complex. The exosome plays a central role in 3' to
                     5' RNA processing and degradation in...; cd05789"
                     /db_xref="CDD:240215"
     Site            order(78,90,92,106)
                     /site_type="other"
                     /note="subunit interface [polypeptide binding]"
                     /db_xref="CDD:240215"
     Site            order(92,100,110,112)
                     /site_type="other"
                     /note="RNA binding site [nucleotide binding]"
                     /db_xref="CDD:240215"
     Region          172..290
                     /region_name="KH-I_Rrp4_eukar"
                     /note="type I K homology (KH) RNA-binding domain found in
                     exosome complex component Rrp4 from eukaryote; cd22525"
                     /db_xref="CDD:411953"
     Site            order(172,181,184,186..187,189,207,233,236,239..240,
                     243..244,252..253,273..274,290)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:411953"
     CDS             1..298
                     /gene="LOC106089445"
                     /coded_by="XM_013255296.2:97..993"
                     /db_xref="GeneID:106089445"
ORIGIN      
        1 mttnvnirla ldrvnmglla qnqanaprly tpgevvtaqq gfmkghgtyv egddikasva
       61 gvmeqvnklv sikplksryv geigdvvvar itevqqkrwk vntnsrldsv lllssvnlpg
      121 gelrrrvaed eqamrkylqe gdlisaevqn iydegtlsly trslkygkls qgvlvkvfps
      181 lvkrrkthfh nlpcgasiil gnngfiwisp sasgtgevgd ggfsqnlsev ipradrevia
      241 rlrncilala hckmmlydts isyayeesmk ydvhellqqe aifdvafltq hrlrlqee