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LOCUS XM_714072 1695 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_714072 VERSION XM_714072.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1695) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1695) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1695) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1695) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1695) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1695) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_714072.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1695 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1695 /gene="MDR1" /locus_tag="CAALFM_C603170CA" /db_xref="GeneID:3639260" CDS 1..1695 /gene="MDR1" /locus_tag="CAALFM_C603170CA" /note="Plasma membrane MDR/MFS multidrug efflux pump; methotrexate is preferred substrate; overexpression in drug-resistant clinical isolates confers fluconazole resistance; repressed in young biofilms; rat catheter biofilm induced" /codon_start=1 /transl_table=12 /product="Mdr1p" /protein_id="XP_719165.2" /db_xref="CGD:CAL0000173998" /db_xref="GeneID:3639260" /translation="MHYRFLRDSFVGRVTYHLSKHKYFAHPEEAKDYIVPEKYLADYK PTLADDTSINFEKEEIDNQGEPNSSQSSSSNNTIVDNNNNNDNDVDGDKIVVTWDGDD DPENPQNWPTLQKAFFIFQISFLTTSVYMGSAVYTPGIEELMHDFGIGRVVATLPLTL FVIGYGVGPLVFSPMSENAIFGRTSIYIITLFLFVILQIPTALVNNIAGLCILRFLGG FFASPCLATGGASVADVVKFWNLPVGLAAWSLGAVCGPSFGPFFGSILTVKASWRWTF WFMCIISGFSFVMLCFTLPETFGKTLLYRKAKRLRAITGNDRITSEGEVENSKMTSHE LIIDTLWRPLEITVMEPVVLLINIYIAMVYSILYLFFEVFPIYFVGVKHFTLVELGTT YMSIVIGIVIAAFIYIPVIRQKFTKPILRQEQVFPEVFIPIAIVGGILLTSGLFIFGW SANRTTHWVGPLFGAATTASGAFLIFQTLFNFMGASFKPHYIASVFASNDLFRSVIAS VFPLFGAPLFDNLATPEYPVAWGSSVLGFITLVMIAIPVLFYLNGPKLRARSKYAN" misc_feature 355..1671 /gene="MDR1" /locus_tag="CAALFM_C603170CA" /note="Yeast Polyamine transporter 1 (Tpo1) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily; Region: MFS_Tpo1_MDR_like; cd17323" /db_xref="CDD:340881" misc_feature order(385..390,397..402,409..411,505..507,661..666, 670..678,685..687,745..747,754..759,766..768,1078..1080, 1087..1092,1099..1107,1114..1116,1186..1188,1198..1200, 1411..1416,1426..1428,1438..1440,1486..1488,1495..1500, 1507..1512,1519..1521) /gene="MDR1" /locus_tag="CAALFM_C603170CA" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340881" ORIGIN 1 atgcattaca gatttttgag agatagtttt gttggtagag tgacttatca tttatcaaaa 61 cataaatact ttgcccatcc agaagaagct aaagattata ttgtccccga gaaatattta 121 gccgattaca aaccaactct tgctgatgat acaagtataa attttgaaaa agaagaaata 181 gataatcaag gtgaacccaa ttcaagtcaa tcatcatctt ccaataacac aatagtcgac 241 aacaacaaca ataatgataa tgatgttgat ggagataaaa tagttgtcac ttgggatggt 301 gatgatgatc ccgaaaaccc tcaaaattgg ccaactttac aaaaagcatt tttcattttc 361 caaatttcat ttttgacaac ttcagtttat atgggatcag cagtatatac ccctggtatt 421 gaagaattaa tgcatgattt tggtattgga agagtcgtag ctacattgcc attaacatta 481 tttgttattg gttatggtgt tggcccattg gttttcagtc cgatgtcaga aaatgctata 541 tttggtcgta catccatata tatcataaca ttatttttat ttgtcatact acaaattccc 601 actgctttgg ttaataatat tgctggttta tgtatattga gatttttggg tggattcttt 661 gctagtcctt gtttggccac tggtggtgca agtgttgctg atgtggttaa attttggaat 721 ttaccagttg ggttagccgc ttggagtttg ggtgctgttt gtggtcctag ttttggtcca 781 ttctttggtt caattttaac tgtcaaagcc agttggagat ggactttttg gttcatgtgt 841 atcatttctg ggttttcatt tgttatgttg tgtttcactt tacctgaaac ttttggcaaa 901 acattattat atcgcaaggc taaaagattg agagccatca ccggtaacga cagaatcaca 961 agtgagggag aagttgaaaa tagcaaaatg acaagtcatg aattgatcat tgatacatta 1021 tggagaccat tagaaatcac tgttatggaa ccagttgttc ttttgattaa catttacatt 1081 gccatggtgt acagtattct ttacttgttt ttcgaagttt tcccaattta tttcgttgga 1141 gttaaacatt tcaccctcgt tgaattgggt accacatata tgtcaattgt tattggtatt 1201 gtcattgctg cctttattta tattccagtt attagacaaa aattcaccaa accaattttg 1261 cgtcaagaac aggttttccc cgaagtgttt attccaattg ccattgttgg tggtatcttg 1321 ttaacttcag gtcttttcat ttttggttgg tcagcaaata gaaccactca ttgggttggt 1381 ccattgtttg gtgctgctac tactgcttct ggtgcatttt tgattttcca aacattattc 1441 aatttcatgg gtgcttcatt taagcctcac tatattgctt cagtttttgc atcaaatgat 1501 ttgttcagat cagtcattgc atcagtgttc ccattatttg gtgctccttt gtttgacaat 1561 ttggccaccc ctgaatatcc agttgcttgg ggtagttccg tgttgggttt catcaccctt 1621 gttatgattg ctattccagt tttgttttac ttgaacggac caaagttgag agcaagatct 1681 aagtatgcta attag