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LOCUS XM_714053 2433 bp mRNA linear PLN 18-APR-2022 mRNA. ACCESSION XM_714053 VERSION XM_714053.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2433) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2433) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2433) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2433) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2433) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2433) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_714053.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2433 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2433 /gene="PEP3" /locus_tag="CAALFM_C603020WA" /db_xref="GeneID:3639267" CDS 1..2433 /gene="PEP3" /locus_tag="CAALFM_C603020WA" /note="Peptidase; activity useful for strain identification by multilocus enzyme electrophoresis (MLEE); clade-associated gene expression" /codon_start=1 /transl_table=12 /product="tethering complex subunit" /protein_id="XP_719146.2" /db_xref="CGD:CAL0000182547" /db_xref="GeneID:3639267" /translation="MSSNGHKTKSIKSETNSSYTVHSLDQQQASICDNLQQAKFELEP VHLQFSLSNKLNKLLVSSNIMYILLXNVVYKIDLDNPSQVENYALPGKVTNAWLNPNG QTLIVQIEKQAYYTLEKKVFKLLKFKNIEVTSIAFSNHNMVVGTKDGIIYVYEKSLKQ VYKVDSPVQGVMFSNDYSQINVLANSLYTWDCFDTSYVELQKVFKQTTPVIKSINPPG IFTSNPQNYVYISSDNEIITNDEEMQLDRVDEEFSQIALTPHHLIGIEGNSLKIYNKL NKQLQELSLSENKIRGIAVDNLFNTYWVYTKNSIYEFVIENESISVWYDYYKMGKYSE ALKYLDEDDEANFSKRDLVLIKQGYDYLQRGGFGISSDDLSLQIQGIQILAKSTEPFE KVCLMLLNHKQSDALLIEYLLAKLNKKNKVRXIVLSAWIIELMVRNDDSRVYEFIKTN YKLLDRPTMYQILNSEKLIFYAELIEDYNFILKYYIDKKNWTLAVKTLIKLYTKGDIE LVYENATILLMNYPKVTETWLKLDLEYEKLLPALLKHQEQAIHFLQQVIMDKHYKKNK QLNNAYLCLLITKPGTDKQIIKFINFTSNFDTNFILRLCISHEKFHPAVLIYIEIGLF DQALELALKHDLTSLAEFILNKYDEDKQVEGIKLEDANYNVKRKLWLKFAKYLIDKSD DLNETLHHIVNVSMLDLKDLLPLFPETISINNFKDEIVESLNEYNKRIVHLSLDMNNS SEHLREMKKKVIYNKKKTNVAIIEPGEPCRKCGKLLVQENFVYFPNCHHAFHKECMKK NQCLLCNDFLNL" misc_feature <763..1089 /gene="PEP3" /locus_tag="CAALFM_C603020WA" /note="Pep3/Vps18/deep orange family; Region: Pep3_Vps18; pfam05131" /db_xref="CDD:461557" misc_feature 1597..2052 /gene="PEP3" /locus_tag="CAALFM_C603020WA" /note="Region in Clathrin and VPS; Region: Clathrin; pfam00637" /db_xref="CDD:459884" misc_feature 2299..2412 /gene="PEP3" /locus_tag="CAALFM_C603020WA" /note="RING finger (Really Interesting New Gene) domain and U-box domain superfamily; Region: RING_Ubox; cl17238" /db_xref="CDD:473075" misc_feature order(2305..2307,2314..2316,2359..2361,2365..2367, 2374..2376,2383..2385,2401..2403,2410..2412) /gene="PEP3" /locus_tag="CAALFM_C603020WA" /note="cross-brace motif; other site" /db_xref="CDD:438111" ORIGIN 1 atgtcatcca acgggcataa aaccaaatct ataaagtcgg aaaccaattc gtcatataca 61 gttcattcay tagatcaaca acaggcgtca atatgtgata atctacaaca agccaaattt 121 gaattagagc cggtacattt gcagtttagt ttatcgaata aacttaacaa gctattggta 181 tcaagcaata taatgtatat cctattarcc aatgttgttt ataagattga tttggataat 241 ccttcacagg tggagaatta tgcgttgcct ggtaaagtaa cgaatgcttg gttgaatcca 301 aatggtcaaa ctttgattgt gcaaattgag aaacaggcgt actatacact tgaaaagaaa 361 gtatttaaat tgttgaaatt caaaaatata gaagtcacat ctattgcatt ttcyaatcac 421 aatatggtgg tggggacaaa agacgggata atctacgttt atgaaaaatc attaaaacag 481 gtctacaaag tcgattctcc agtacaagga gtaatgtttt ccaatgatta ttctcaaatc 541 aatgttttag caaacagttt atacacctgg gattgttttg atacttcata tgttgagttg 601 caaaaagtat ttaaacagac aacacccgtt atcaaatcaa ttaacccacc tgggatattc 661 acgtcaaacc cacagaacta tgtgtatata tcatcagata atgaaataat aaccaacgac 721 gaggaaatgc aattggatcg agttgatgag gagtttctgc aaattgcact tacaccgcac 781 catcttattg gtattgaagg gaattcttta aagatatata acaaacttaa caagcaattg 841 caagagttga gcctttctga gaacaaaata cgaggaatcg ccgtggataa cttattcaac 901 acctattggg tgtacaccaa aaactctatc tacgagtttg ttattgaaaa cgagtcaatc 961 ctggtttggt atgattatta caaaatggga aaatattcag aggcattgaa atatttggat 1021 gaagatgatg aggcaaattt tctgaaacgt gatttagttt tgattaagca ggggtatgat 1081 tatttacaac gtggtggatt tggaatactg tcggatgact tgagtttaca gatacagggg 1141 attcaaatat tggcaaaact gactgarcca tttgaaaaag tttgcttgat gttacttaac 1201 cataaacaat ctgatgcttt actcattgaa tatttgttgg ccaaattgaa taaaaagaat 1261 aaagtccgar trattgtgtt gtcagcttgg attattgaat tgatggtgag aaatgatgat 1321 tcgagagttt atgaattcat taaaaccaat tataagctac tygatcgtcc tacaatgtat 1381 caaatattga attctgagaa gttgattttc tatgctgagt tgattgaaga ttataatttc 1441 attttaaagt attacattga taaaaagaat tggacattag cggttaaaac attaataaaa 1501 ctttacacta aaggagatat tgaattagtt tatgaaaatg ccactatttt gttaatgaac 1561 tacccaaaag tgactgaaac gtggttaaaa cttgatttgg aatatgagaa acttttaccg 1621 gcacttttga agcaccaaga gcaagcaaty catttcttac aacaagtcat tatggataaa 1681 cactacaaga aaaacaaaca gttaaacaat gcttatttgt gtttattaat tacaaaacca 1741 ggtactgata aacaaataat aaaattyatt aatttcacat ccaattttga taccaatttc 1801 attcttcggt tatgtatatc tcacgaaaaa tttcatcctg cggtattaat ttacattgaa 1861 attggcttat ttgatcaagc cttagaactt gcccttaaac acgatttgac tagtcttgct 1921 gaatttatat tgaacaagta cgacgaggac aaacaagtag agggaattaa acttgaagat 1981 gcaaattata atgtcaagag aaaactttgg ttaaaatttg ctaaatatyt aatcgataaa 2041 ctggatgact tgaatgaaac attgcatcac atcgtcaatg tttcaatgct tgatttgaaa 2101 gaccttttac cgttatttcc ggaaacgata ctgattaata attttaaaga cgagatagtt 2161 gaatcactaa atgagtayaa taaacgaatt gttcatttgt cgttagatat gaataactcg 2221 tctgagcatt tgcgggaaat gaagaaaaaa gtgatttata acaaaaagaa aacaaatgtg 2281 gccataatag aaccaggtga accgtgtcgc aaatgtggca aattgttagt acaagagaac 2341 tttgtttatt ttccaaattg ccatcatgcg ttccataagg agtgtatgaa aaagaaccaa 2401 tgtttattat gtaatgattt tttgaattta tag