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LOCUS XM_714032 702 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_714032 VERSION XM_714032.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 702) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 702) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 702) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 702) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 702) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 702) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..702 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>702 /gene="RNH1" /locus_tag="CAALFM_C602870WA" /db_xref="GeneID:3639237" CDS 1..702 /gene="RNH1" /locus_tag="CAALFM_C602870WA" /note="Ribonuclease H (RNAse H); hyphal-induced; flucytosine induced; similar to orf19.5564 (see Locus History); possibly essential (UAU1 method); rat catheter biofilm induced; flow model biofilm repressed" /codon_start=1 /transl_table=12 /product="Rnh1p" /protein_id="XP_719125.1" /db_xref="CGD:CAL0000191701" /db_xref="GeneID:3639237" /translation="MPYYAVVNGREEGVFSSWQDCRPHVFAYKGAHFRKFENRNEAEE YYQNDGDYFIYPIYVDGACRYNGCPHAEAGYGVYYGDGDSRNVSVPLDDVDPDGIIPT NQRAELWAMNHALRNIWNELQEDTEDGKAVIYSDSIYAIKCLTKWPNKWTQNGWLNVH GQTISNYDLVTKNYELYEWINDEYDDRGWGELDLIHVKGHSGNDGNEEADNLANLAAD RYGYQSSSSSSGSYY" misc_feature 4..135 /gene="RNH1" /locus_tag="CAALFM_C602870WA" /note="Caulimovirus viroplasmin; Region: Cauli_VI; pfam01693" /db_xref="CDD:460297" misc_feature 169..654 /gene="RNH1" /locus_tag="CAALFM_C602870WA" /note="Eukaryotic RNase H is essential and is longer and more complex than their prokaryotic counterparts; Region: RNase_HI_eukaryote_like; cd09280" /db_xref="CDD:260012" misc_feature order(178..189,193..201,304..312,319..321,406..408, 412..417,493..498,586..588,595..597,640..642) /gene="RNH1" /locus_tag="CAALFM_C602870WA" /note="RNA/DNA hybrid binding site [nucleotide binding]; other site" /db_xref="CDD:260012" ORIGIN 1 atgccatatt acgcagttgt taatggtcgt gaagaagggg ttttctctag ctggcaagat 61 tgtcgaccac acgtctttgc ttataaaggt gcccattttc gtaaatttga aaatagaaat 121 gaggcagaag aatattatca aaatgacgga gattatttca tctatccaat atatgttgat 181 ggtgcttgta gatataatgg ttgcccacat gcagaagctg gatatggggt ttattatgga 241 gatggtgatt caagaaacgt gtcagtacca ttggatgacg ttgatcctga tggaattatt 301 ccaactaatc aacgagctga actttgggca atgaaccatg ccttgagaaa catttggaat 361 gaactacagg aagatactga agatggtaag gctgttattt atagtgattc gatttatgcc 421 atcaaatgtc ttacaaagtg gcctaacaaa tggacacaaa atggttggtt aaatgttcat 481 ggtcaaacaa tttccaatta tgatttggtt actaaaaact atgagttata tgagtggatt 541 aatgatgaat atgatgatag gggttgggga gaattggatt taattcatgt taaaggacat 601 tcaggaaacg atggaaatga agaagcagat aatctagcaa acttggctgc tgatagatat 661 ggctatcagt ccagttcatc gtcatctggt tcttattact ga