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LOCUS XM_714004 2298 bp mRNA linear PLN 18-APR-2022 (CAALFM_C602630CA), partial mRNA. ACCESSION XM_714004 VERSION XM_714004.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2298) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2298) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2298) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2298) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2298) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2298) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_714004.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2298 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2298 /locus_tag="CAALFM_C602630CA" /db_xref="GeneID:3639221" CDS 1..2298 /locus_tag="CAALFM_C602630CA" /note="Ortholog(s) have guanyl-nucleotide exchange factor activity, ubiquitin binding activity" /codon_start=1 /transl_table=12 /product="guanine nucleotide exchange factor" /protein_id="XP_719097.2" /db_xref="CGD:CAL0000186676" /db_xref="GeneID:3639221" /translation="MSFKNQFNFNISKSTPTTSTNNTNTTSNSNSTSNDNPQPTTAKP PPFISNILLKSNFDSSVSTNNSSKTPPKSSSPRLSATGVVPAVVTIDNGELIGNNTSN TSTDSSKTDLIGLFDKFDINKDDKEQTKPEHEEHHPITEKHEDDEVSHEDKLEKMVSD DDGDDEESHKEKEVVSEKEGTSTKDITSSPSIKQTEQKNSGTTSFAALMTIQPYIPPE EKEVHEKHEESVNDDNLIDLDDRETSKSKNNNLHDDPVQSESTNVNQVESSTPKGNFL DIAGSEKEQSGVEELSLKVGDSESKTTSDVPTEDVSTSDANKSHKHRFQINDSSEQNK QSHKPFDFQTFLVQLRKKSADPIVRYIRSFLSSFIRQGHTFTSDQRIKIISDFKIFMN EKFTLYEPFASMDQIDLENSREGLEKLIMNRLHDLCFPPEVVKQNLSYIPEPYTLDLQ KDESFALQLEKFSWINGNHLDIDMNDLANKIVKNDQSFLEYAITELNKINNYRAPRDK IICILNACKIIFSYLKLSKQETNADSFIPILILVIFKAKTDHLISNIHYIENFRGQEW LLHGETSYYLSSIQGAVEFIQNITAEDLTISQAEFDAHMEAWDAQRKQKVQQLKLVQP IPTIPTTPTDGTGETNLKPDMSHTPNGLSPSKVLFSSAEMFTKSITNFLSPSPHLSES EPEEFQPPPNSPPPSQDQNDPSAQYQPLPPREEEINAEQMRKAYDTLIEIFPSLDTNI LKDVIFINRGNIDVCIDACLQLVDG" misc_feature 1075..1275 /locus_tag="CAALFM_C602630CA" /note="Domain of unknown function (DUF5601); Region: DUF5601; pfam18151" /db_xref="CDD:465668" misc_feature 1465..1770 /locus_tag="CAALFM_C602630CA" /note="Vacuolar sorting protein 9 (VPS9) domain; Region: VPS9; pfam02204" /db_xref="CDD:460489" misc_feature 2161..2286 /locus_tag="CAALFM_C602630CA" /note="CUE domain found in vacuolar protein sorting-associated protein 9 (VPS9) and similar proteins; Region: CUE_VPS9_like; cd14369" /db_xref="CDD:270552" misc_feature order(2161..2163,2173..2175,2179..2187,2191..2199, 2206..2208,2218..2220,2230..2235,2242..2250,2260..2268) /locus_tag="CAALFM_C602630CA" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:270552" ORIGIN 1 atgtcattca agaatcaatt taattttaat atatcaaagt cgacccccac gacatcaaca 61 aataatacta atacgacaag caacagcaat tcgacatcta atgataatcc acaaccaact 121 acagcaaaac cgccaccttt catactgaat atattgttga aaagtaactt tgacagttct 181 gtatccacca acaattctag taagaccccg ccaaaatcgt cgtctccaag attatcagct 241 acaggagtcg ttcctgcggt cgttactatt gataatggag aactaatagg taacaatact 301 tctaatactt ctacagactc atctaaaaca gatttaattg ggttgtttga taaattcgat 361 atcaacaaag atgataaaga acagactaaa ccagagcatg aagagcatca ccctatcaca 421 gaaaaacacg aggatgatga agtttcacac gaagataaat tagaaaaaat ggtactggat 481 gatgacggtg acgatgaaga gtcacataaa gaaaaggaag tggtgtcaga gaaagaagga 541 acatcgacta aagatataac tctgtctcca tctattaagc agactgaaca aaaaaatagt 601 ggaactactt catttgctgc acttatgaca attcagcctt acattccacc tgaagaaaaa 661 gaggttcacg aaaagcacga ggaatcagtt aatgatgata atttaattga tttagatgac 721 agggaaacat ctaaaagtaa aaataacaat ttgcatgatg atccggtaca atcggagtcc 781 acgaatgtaa atcaagttga aagcagcaca ccaaagggca actttcttga tattgcgggg 841 tctgagaaag aacaatctgg agtcgaagaa ttgagtttaa aagtaggaga ttctgaatct 901 aaaacaacta gtgatgtgcc cactgaagat gtatcaacct ctgacgcaaa taaatcccat 961 aaacacagat tccaaattaa tgattcttcg gagcaaaaca aacaatcgca taaaccattt 1021 gattttcaaa catttttagt tcaattacgt aaaaagtctg cagatccaat agtgagatac 1081 attcgatcgt ttttaagttc attcattaga cagggtcaca catttacatc tgatcaaaga 1141 ataaagatta ttctggattt caagattttc atgaatgaga agtttacatt gtatgaacca 1201 tttgcgtcta tggatcaaat tgatttggag aattctcgtg aaggattaga gaagttgatc 1261 atgaatcgtt tgcatgattt gtgtttccca ccagaagttg ttaaacaaaa cttgtcttac 1321 atccctgaac cttatacact agatttgcaa aaggacgagt ctttcgcttt gcaattggaa 1381 aagttttctt ggatcaatgg gaaccacttg gatatcgata tgaatgattt ggcaaacaaa 1441 attgtgaaaa atgaccagtc atttcttgag tatgccatta ctgaactaaa caaaatcaac 1501 aattacagag caccacgaga taaaatcata tgtattctca atgcatgtaa gattatattc 1561 agttatttga agttaagcaa acaagaaaca aacgcggatt cctttattcc aatattgatt 1621 ttagtcatat tcaaagccaa aacggaccac ttgattagta acattcacta tattgagaat 1681 ttcagaggac aagagtggtt attacatgga gaaacaagct actatctttc ctcgattcaa 1741 ggtgcagttg agttcataca aaacattact gcagaagatt tgacaatcag tcaagctgag 1801 tttgatgccc atatggaagc ctgggatgcc cagaggaaac agaaagtgca acaattgaaa 1861 ttagtacaac caattccaac aatacctaca acaccgacag atggtactgg tgaaacaaac 1921 ttaaaaccag atatgtccca tactccaaat ggactttcac cttcgaaggt attgttttct 1981 agtgcagaga tgtttacaaa atccattacc aactttttat cgccactgcc acatttatcc 2041 gaatctgaac ctgaagaatt tcaaccacca ccaaattcac caccaccatc tcaagaccag 2101 aatgatcctt cagctcaata tcaaccatta cctccaaggg aagaagaaat taatgctgaa 2161 caaatgcgga aagcctacga tacattaatt gaaatatttc cttcgttaga tactaacatt 2221 ttaaaagatg tgatatttat caatcgtggg aatatagatg tctgtattga tgcatgttta 2281 caattggtcg atggttga