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LOCUS XM_713007 2397 bp mRNA linear PLN 18-APR-2022 ACCESSION XM_713007 VERSION XM_713007.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 2397) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 2397) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 2397) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 2397) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 2397) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 2397) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_713007.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..2397 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>2397 /gene="NUP82" /locus_tag="CAALFM_C603900WA" /db_xref="GeneID:3640261" CDS 1..2397 /gene="NUP82" /locus_tag="CAALFM_C603900WA" /note="Linker nucleoporin of the nuclear pore complex; role in mRNA andexport from nucleus, protein import into nucleus, ribosomal large subunit export from nucleus, ribosomal small subunit export from nucleus; rat catheter biofilm repressed" /codon_start=1 /transl_table=12 /product="linker nucleoporin" /protein_id="XP_718100.2" /db_xref="CGD:CAL0000183573" /db_xref="GeneID:3640261" /translation="MPPIGSSDQFIHQITQQFVFQRLWTGNATTPELAPASTPYNRLV CRNNTDLFYATGNIVRCCTISPNHKNYKLFKVENQFYEVASLLMNKSGTLLAIIGEEQ VDVVSLPTNVMKSSGIYVDGASFKIKNLRGKVRKCVWQTVAANDSTLVVLTDNSQIQA YDLTKSLEVPVIDVDLKRYANFANEEAISIAFGSSKNLAGGLTLYVSTLSNIYAIYPF SAKFGNLATTKEAIDIALEDTKAAMELIQEKYPVNLLDTATSTLNKAAIRQFEYYSHF KSQLSGALPIIKEVRDTHTNNPYELFVVSQTLSDWTGYSLQGPLISSNAGIKDLASIG DNDLVSILASIDANATVTYYAQLAPMLMKYNIMSTASEGAPSESSQTVCKPKYVKPKR GFGFIDNSEEEEKALVKSKQSQESFWKEELTSLDLLQRDKLPVDENDDATGFPTFFGE IDSNRFSVCVNSNKLVLVDCSWVKTFVDDLKEDKIDSVSISTNYGIASTEKEPITAFA YIKDDVTSTGEYLTVCRSKLVNDMEVIQIVDKVVSDQDEATSTLLLTEEPYKELPLTY IPSKPFSELEEELESLGKINIGADVKGNEDLNSLTVDSLSSLNSLSVRTIQVASSYTI FGIKLQSRILANLDSLKEQLHILEKVKNEYDGDQKDHTEKLEKLTEKQAKLDERIIKL QQKIFDGLNKFKQDKTLPISEAERNWFKEINSINALVNSSTDNEVGLTKKIENLSLQV HSIIEDSGKEKKPKLTAVEQLELEKRLSKLKNWLQREDKSIEILKDKLTNSLKLIGDK " misc_feature 241..>489 /gene="NUP82" /locus_tag="CAALFM_C603900WA" /note="Nuclear pore component; Region: Nup88; pfam10168" /db_xref="CDD:462975" misc_feature <1903..>2364 /gene="NUP82" /locus_tag="CAALFM_C603900WA" /note="RecF/RecN/SMC N terminal domain; Region: SMC_N; cl47134" /db_xref="CDD:481474" ORIGIN 1 atgccaccca taggatcatc tgatcaattc attcaccaaa ttacacagca atttgtgttt 61 caacgtttat ggactggaaa tgcaacaacc ccagagttag caccagcttc aaccccctac 121 aatcgattgg tatgccgtaa taataccgat ttattctatg caactggcaa tattgttcga 181 tgctgcacaa ttagtcccaa tcataaaaac tacaagctat ttaaggttga gaatcaattc 241 tatgaagtag cttctttgtt gatgaataaa tcgggtacct tgttagcgat catcggagaa 301 gagcaggtcg atgttgtgtc attacccacc aatgttatga aaagtagtgg tatttatgtt 361 gatggtgcat cgttcaagat taagaattta agaggtaagg taagaaagtg tgtttggcaa 421 acagttgcgg caaacgattc aacattagta gtgttgactg ataattcaca aatccaagct 481 tatgatttga caaaatcttt ggaggtccct gtgattgatg ttgatttgaa aagatatgcc 541 aactttgcaa atgaggaagc catttctatt gcatttgggt cgtctaaaaa tttagctggt 601 ggattgactt tgtatgtctc aacattgtca aacatctatg ctatttatcc attcagtgca 661 aaatttggta atttggccac cactaaagaa gcaattgata tagctttgga agatacaaaa 721 gcagctatgg agttgattca ggaaaaatac cctgtaaact tattagacac ggcaactagt 781 actttgaata aagcagctat ccgacaattt gagtattacc tgcatttcaa atcccagtta 841 agtggcgcgt taccaataat taaggaagta agagacactc atacaaataa tccatacgag 901 ctttttgttg ttagtcagac cttaagtgat tggactggtt acagcttaca aggtcccctc 961 atttcaagta atgctggtat aaaggattta gcttcaattg gtgacaatga tttagttagt 1021 atacttgcta gtattgatgc taatgctaca gttacttact atgctcaact tgcacccatg 1081 ttgatgaagt acaacataat gagtacagca agtgaaggtg caccaagtga atcaagccaa 1141 acagtttgca aaccaaagta tgttaaacca aaaagaggat ttggtttcat agacaactcc 1201 gaggaagagg agaaagcatt ggtaaaactg aaacaatcac aggaaagctt ttggaaagaa 1261 gaattgacaa gcttggatct tttgcaaagg gacaagcttc cagttgatga aaatgatgat 1321 gctactggct tcccaacttt ctttggagaa attgattcta atagattcag tgtttgtgtg 1381 aattccaaca aattggtttt agttgattgt tcttgggtga agacttttgt agacgatctt 1441 aaagaagaca aaatagattc cgtatcgatc tcaacaaatt atggtattgc ctccacagaa 1501 aaagaaccca ttacggcatt tgcatatata aaagacgatg tcacttctac tggagaatac 1561 ttgactgttt gcagaagtaa acttgtcaat gacatggaag ttatccagat tgtggataag 1621 gtagtgagcg atcaggatga agccacaagc actttactat tgacagaaga gccatataag 1681 gaattaccat taacatacat tccatctaaa cctttcagtg agttggaaga agaattagaa 1741 agtttgggga agatcaatat tggcgctgat gttaaaggca atgaggattt gaatagtttg 1801 actgttgata gtctttcaag tttgaactct ttatctgtga ggacaattca agttgcatcc 1861 tcctatacaa tatttggtat taaattgcaa tcaagaattt tagccaattt ggattctttg 1921 aaggaacaat tacatatact tgaaaaggtt aagaatgagt atgatggaga tcaaaaagac 1981 cacacagaaa aattggaaaa gttgacagag aaacaagcaa aattagatga acgtataata 2041 aaattacagc aaaagatatt tgatggtttg aataagttca agcaagacaa gacgttgcca 2101 atatccgagg cagaaagaaa ttggttcaaa gaaatcaact ctatcaatgc attagtgaat 2161 tcttctacag ataatgaagt cgggttgaca aaaaagattg agaatttatc gttacaagtt 2221 cattccatta ttgaagatag tggaaaggag aagaaaccaa aattgactgc tgtggaacag 2281 ttagaattgg aaaaacgatt aagcaaatta aagaactggt tacagcgtga agacaagtct 2341 attgaaattt taaaagacaa acttactaat tcattaaaat taataggtga caaatag