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LOCUS XM_712993 1413 bp mRNA linear PLN 18-APR-2022 partial mRNA. ACCESSION XM_712993 VERSION XM_712993.1 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 1413) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 1413) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 1413) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 1413) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 1413) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 1413) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..1413 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>1413 /gene="SHM2" /locus_tag="CAALFM_C603760CA" /db_xref="GeneID:3640306" CDS 1..1413 /gene="SHM2" /locus_tag="CAALFM_C603760CA" /note="Cytoplasmic serine hydroxymethyltransferase; complements glycine auxotrophy of S. cerevisiae shm1 shm2 gly1-1 mutant; antigenic; farnesol-upregulated in biofilm; stationary-phase enriched protein; rat catheter and Spider biofilm repressed" /codon_start=1 /transl_table=12 /product="glycine hydroxymethyltransferase" /protein_id="XP_718086.1" /db_xref="CGD:CAL0000189123" /db_xref="GeneID:3640306" /translation="MSAYALSQSHRQLTEGHLKDTDPEVDQIIKDEIDRQQHSIVLIA SENFTTTAVFDALGTPMCNKYSEGYPGARYYGGNEHIDRMELLCQERALKAFGLTPDK WGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLPHGGHLSHGYQTDSRKISAVSTYFE TMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAYCRLIDYKRMREIADKVGAYLV VDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRRGVRSVNPKTGQEI LYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQVLKNAKALESEF TKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPGDKSALVPGG VRIGAPAMTTRGLGEEDFKKIVSYIDFAVNYAKEVQSQLPKDANKLKDFKNAVSGDSE KLKAVRDEIYQWAGSFPLAV" misc_feature 49..1401 /gene="SHM2" /locus_tag="CAALFM_C603760CA" /note="serine hydroxymethyltransferase; Provisional; Region: PLN03226" /db_xref="CDD:215639" misc_feature order(64..66,70..72,91..96,121..123,136..138,190..192, 244..249,271..273,328..330,349..351,469..474,889..891, 943..945) /gene="SHM2" /locus_tag="CAALFM_C603760CA" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99733" misc_feature order(133..135,193..195,223..225,334..339,418..420, 583..585,658..660,667..669,742..747,763..765,1180..1182) /gene="SHM2" /locus_tag="CAALFM_C603760CA" /note="glycine-pyridoxal phosphate binding site [chemical binding]; other site" /db_xref="CDD:99733" misc_feature order(133..135,418..420,745..747,1180..1182) /gene="SHM2" /locus_tag="CAALFM_C603760CA" /note="active site" /db_xref="CDD:99733" misc_feature order(199..201,220..222,403..405,415..417,421..423, 865..867,1135..1137) /gene="SHM2" /locus_tag="CAALFM_C603760CA" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:99733" ORIGIN 1 atgtctgctt acgctttatc tcaatctcat agacaattga ctgaaggtca tttaaaagat 61 actgatcctg aagttgatca aatcattaaa gatgaaattg atagacaaca acattccatt 121 gttttaattg cttcagaaaa tttcactact actgctgttt tcgatgcctt gggaactcca 181 atgtgtaata aatattctga aggttatcct ggtgctagat attatggtgg taatgaacat 241 attgatagaa tggaactttt gtgtcaagaa agagctttaa aagcttttgg tttgactcca 301 gataaatggg gggttaatgt tcaaactttg agtggatctc cagctaattt acaagtttat 361 caagccatta tgaaacctca tgaaagatta atggggttgg atttacccca tggtggtcat 421 ttatctcatg gttatcaaac cgattcaaga aaaatttctg ctgtttccac ttattttgaa 481 accatgcctt acagagttga tttagaaact ggattgattg attatgatat gttggaaaaa 541 actgctgttt tgtatagacc aaaagtttta gttgctggta cttctgctta ttgtagatta 601 attgattaca aaagaatgag agaaattgcc gataaagttg gtgcttacct tgttgttgat 661 atggctcata tttccggttt aattgctgct ggtgttatcc catcaccatt tgaatacgct 721 gatattgtca ccaccactac tcataaatca ttaagaggtc caagaggtgc catgattttc 781 tttagaagag gggtaagatc agttaatcca aagactggtc aagaaatctt gtatgattta 841 gaaaacccaa ttaacttctc agtgttccca ggtcatcaag gtggtccaca taatcatacc 901 attgctgcct tggctactgc tttgaaacaa gctaatactc cagaatttaa agaatatcaa 961 gaacaagttt tgaaaaatgc taaagcttta gaaagtgaat tcaccaaaaa aggttataaa 1021 ttagtttctg acggtactga ttctcatatg gttttagtgt ctttaaaaga taaacaaatt 1081 gatggtgcta gagttgaaac tgtttgtgaa aaaatcaata ttgctttgaa taagaattcc 1141 attcctggag ataaatcagc tttagttcca ggtggagtta gaattggtgc cccagccatg 1201 actacaagag gtttaggtga agaagatttc aagaaaatcg ttagttatat tgattttgct 1261 gtcaattatg ctaaggaagt tcaatcacaa ttaccaaaag atgctaataa attgaaagat 1321 ttcaaaaatg ctgtttctgg tgatctggaa aaacttaaag ctgttagaga tgaaatttat 1381 caatgggctg gttctttccc attagcagta taa