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LOCUS XM_711645 3688 bp mRNA linear PLN 18-APR-2022 (CAALFM_C601550CA), partial mRNA. ACCESSION XM_711645 VERSION XM_711645.2 DBLINK BioProject: PRJNA14005 BioSample: SAMN02953594 KEYWORDS RefSeq. SOURCE Candida albicans SC5314 ORGANISM Candida albicans SC5314 Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Pichiomycetes; Debaryomycetaceae; Candida/Lodderomyces clade; Candida. REFERENCE 1 (bases 1 to 3688) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure JOURNAL Genome Biol. 14 (9), R97 (2013) PUBMED 24025428 REFERENCE 2 (bases 1 to 3688) AUTHORS van het Hoog,M., Rast,T.J., Martchenko,M., Grindle,S., Dignard,D., Hogues,H., Cuomo,C., Berriman,M., Scherer,S., Magee,B.B., Whiteway,M., Chibana,H., Nantel,A. and Magee,P.T. TITLE Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes JOURNAL Genome Biol. 8 (4), R52 (2007) PUBMED 17419877 REFERENCE 3 (bases 1 to 3688) AUTHORS Jones,T., Federspiel,N.A., Chibana,H., Dungan,J., Kalman,S., Magee,B.B., Newport,G., Thorstenson,Y.R., Agabian,N., Magee,P.T., Davis,R.W. and Scherer,S. TITLE The diploid genome sequence of Candida albicans JOURNAL Proc. Natl. Acad. Sci. U.S.A. 101 (19), 7329-7334 (2004) PUBMED 15123810 REFERENCE 4 (bases 1 to 3688) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (15-APR-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 5 (bases 1 to 3688) AUTHORS Muzzey,D., Schwartz,K., Weissman,J.S. and Sherlock,G. TITLE Direct Submission JOURNAL Submitted (04-OCT-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REFERENCE 6 (bases 1 to 3688) CONSRTM Candida Genome Database TITLE Direct Submission JOURNAL Submitted (30-SEP-2016) Department of Genetics, Candida Genome Database, Stanford University, Mail Stop-5120, Stanford, CA 94305, USA REMARK Sequence and annotation update by submitter COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. This record is derived from an annotated genomic sequence (NC_032094). On Dec 8, 2016 this sequence version replaced XM_711645.1. ##Genome-Annotation-Data-START## Annotation Provider :: CGD Annotation Status :: Full annotation Annotation Version :: A22-s07-m01-r01 URL :: http://www.candidagenome.org/ ##Genome-Annotation-Data-END## COMPLETENESS: incomplete on both ends. FEATURES Location/Qualifiers source 1..3688 /organism="Candida albicans SC5314" /mol_type="mRNA" /strain="SC5314" /host="Homo sapiens" /culture_collection="ATCC:MYA-2876" /db_xref="taxon:237561" /chromosome="6" /haplotype="A" /geo_loc_name="USA: New York" /collected_by="Margarita Silva-Hutner" gene <1..>3688 /locus_tag="CAALFM_C601550CA" /db_xref="GeneID:3641653" CDS 1..>3688 /locus_tag="CAALFM_C601550CA" /note="Ortholog(s) have 3'-5' exonuclease activity, DNA-directed DNA polymerase activity, role in mitochondrial DNA replication and mitochondrion localization" /codon_start=1 /transl_table=12 /product="DNA-directed DNA polymerase gamma" /protein_id="XP_716738.2" /db_xref="CGD:CAL0000176297" /db_xref="GeneID:3641653" /translation="MSNRRLLLRGITRSHRSFVTSLRRRQQQQQQQQSSQQLQQQHPL QQFTEEPRVNQLGIQYLSNDLHKKVFPTTSTKDYLSPQHPQLLEISKKHLQENELLGK KTQITEPITIKNFPSLVGKSMDEHFNKLGQKSSDPYLAMATNFLKKELPCKPPKSQWK FQSGWTRYTKDGNPPEQVPYPLEDTLVFDVEVMYKISNYPVMATCASNEAWYSWVSPA LLDWEKQKNNSITTDQIDWNHLIPMNCAKKPKVIIGYNVSYDRARILEEYNIKQTKAF YLDGMSLHVATSGICSRQRPKWAKYNKVKKLSQEDVDEIEGTMEEEEEEEGEMSQELG QLSSESNDVSDYAKLLSDGFQVAVELEVADDPWLLMGAPNSLANVARFHCNIHLDKTD RDYFATEDPNLVIDNFPKLMDYCAKDVDATFEVTKKLFPVFIQRIPHPVSFAALRLLG TLILPTTTKWPKYIEAAESLYESNRQEVATTLQQLANDLVAHIQNKKQVKPDYENDPW LSQLNWKLKETRLKKDGTPYKKTAYMTGYPEWYRELFKTSKGEEMNLTLKTRITPLLL RLKWEGHPLFWVDSQGWCFKVPFDDDNEIARLTEKKYVQPKLTEEELMETRDALLTKG KSYVLFKVPHPNGPSSRCTHILSKLYVRNFEDGTLTSEYDYATKILNLNNEASYWLGN RNRIKDQFVVYNQQGKNKFFDTIKKSKEHSSMGIIIPNLATMGTITRRATENTWLTAS NAKKNRIGSELKSLVEAPKGYCFVGADVDSEELWIASLVGDSMLQIHGGTALGWMTLE GEKSQKTDLHSKTASILGISRNDAKVFNYGRIYGAGVKFATRLLKQFNANITDEEADK VARQLYDSTKGRTAVSKYLPSRIYYGGTESIMFNALEAIAQQEEPKTPVLGASITDAL NVKNLNTNQYMTSRVNWTIQSSGVDYLHLLIISMEYLIEKYGIDARLAITVHDELRYL VKETDKYKAALLLQISNIWTRAMFCEQLGIKEVPQSCAFFSEVDIDHVLRKEVSMDCV TPSNPTPIPLGESLNIGQLLSKCQHGDILADKNTKPLTLRTTKYSPRQPIINQLDKNL TIAEKIAKIELQTSIDKDEWKKNLYNLAKVSRNKQNGKNNSTEKPQRVIKRKPIVEYD LQEDNNKKREIKYKKDPPKSKIATTTTTTTTKKASSNNSKTKSNVKVDESKSAMTILD LKTDQQRPTYNNRKIVYIGNPQSKL" misc_feature 322..1299 /locus_tag="CAALFM_C601550CA" /note="DNA mitochondrial polymerase exonuclease domain; Region: DNApol_Exo; pfam18136" /db_xref="CDD:465664" misc_feature 1981..3105 /locus_tag="CAALFM_C601550CA" /note="Pol gammaA is a family A polymerase that is responsible for DNA replication and repair in mitochondria; Region: DNA_pol_gammaA; cd08641" /db_xref="CDD:176478" misc_feature order(2017..2019,2029..2031,2038..2043,2176..2184, 2188..2190,2194..2205,2299..2304,2413..2415,2455..2457, 2467..2469,2779..2781,2800..2802,2893..2901) /locus_tag="CAALFM_C601550CA" /note="active site" /db_xref="CDD:176478" misc_feature order(2017..2019,2029..2031,2038..2043,2176..2184, 2188..2190,2194..2205,2491..2493,2776..2781,2788..2790, 2800..2802,2893..2901) /locus_tag="CAALFM_C601550CA" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176478" misc_feature order(2299..2304,2308..2310,2413..2415,2455..2457, 2467..2469,2899..2901) /locus_tag="CAALFM_C601550CA" /note="catalytic site [active]" /db_xref="CDD:176478" ORIGIN 1 atgtcaaaca ggcgattact actacgaggg ataacaagat ctcatcgtag ttttgtcaca 61 tcgcttcgaa gaagacaaca acaacaacaa caacaacaac tgctgcagca actacaacaa 121 caacacccac tacagcaatt tactgaggaa ccaagagtaa atcaattagg tatacagtac 181 ttatctaatg atcttcataa aaaggttttc cccaccacat caactaagga ttatctatca 241 ccacaacatc cacaattatt agaaatatct aaaaaacatt tacaagaaaa tgaattatta 301 ggtaaaaaga ctcaaataac tgaaccaata acgataaaga atttcccctc attagtaggt 361 aaatcaatgg atgaacattt taataagttg ggacaaaaat cttctgatcc ttatttagct 421 atggccacaa attttttaaa aaaagagcta ccttgcaaac ctcccaaatc acaatggaaa 481 tttcaatctg gttggacaag atacactaaa gatggtaacc ctccagagca agttccatat 541 ccactagaag atacattggt atttgatgtt gaagtaatgt ataaaatttc taattatccg 601 gtaatggcga cttgtgcatc taacgaagca tggtatagtt gggtctctcc agcgttactt 661 gattgggaaa aacaaaaaaa taacagcatt actaccgatc aaatagattg gaaccatttg 721 ataccaatga attgtgccaa aaaaccaaaa gttattattg gatataatgt aagttatgat 781 cgtgcaagaa ttttggaaga gtataatatt aaacaaacca aagcatttta tctcgatggg 841 atgtcgttac atgtggctac tagcggcatt tgttcaagac aaagacccaa atgggctaaa 901 tacaacaaag ttaagaaatt atcccaagaa gatgttgatg agattgaagg gacaatggaa 961 gaggaagagg aagaagaagg ggaaatgagc caggaattag gccaattatc cagtgaatcc 1021 aatgatgtat cagattatgc taaattattg agtgatggat ttcaagttgc agtagaactt 1081 gaagttgctg acgatccctg gttattgatg ggagcaccta attcattagc caatgttgcc 1141 agatttcatt gtaatattca tttggataaa accgatagag attattttgc tactgaagat 1201 cctaatttgg ttattgacaa tttcccaaaa ttaatggatt attgtgctaa agatgttgat 1261 gcaacttttg aagtcactaa aaaactattc ccagtgttta tacaaagaat accacatcca 1321 gtatcatttg ctgcattgag acttttagga actttgattt taccaacaac aactaaatgg 1381 cctaaatata ttgaggcagc agaatccttg tacgaatcaa atcgacagga agtcgctacc 1441 actttacaac aattagccaa tgatttagtt gcccatatcc aaaacaagaa gcaagttaaa 1501 cctgattatg aaaatgatcc ttggttgagt caattgaatt ggaaattaaa agaaacaaga 1561 cttaagaaag atggaacacc atataaaaaa actgcttata tgacggggta ccctgaatgg 1621 tatcgtgaat tattcaaaac atctaaaggt gaagaaatga atttgacttt gaaaacaaga 1681 atcactccgt tattgcttcg attaaaatgg gagggacatc cattattttg ggttgattca 1741 caaggatggt gtttcaaagt accatttgat gatgataatg agattgctcg attgactgag 1801 aaaaaatatg ttcaaccaaa actaactgaa gaagaattaa tggaaactag agatgcatta 1861 ttgacaaagg ggaaatcata tgttttattc aaagtgccac atccaaatgg cccatcactg 1921 agatgtactc atattttatc aaaactatac gtgagaaatt ttgaagatgg cacactcact 1981 tcagaatatg attatgcaac aaagatttta aatttaaata atgaggcatc atattggtta 2041 ggaaatcgta accgaatcaa agatcaattt gttgtttata accaacaggg gaaaaataaa 2101 ttttttgaca caataaagaa aagtaaagaa cattcatcta tggggataat cattcctaat 2161 ttagccacta tggggacaat tactcgacgt gccacagaaa acacttggct taccgcatcc 2221 aatgccaaaa agaatcgaat tggatcggaa ttaaaatcat tggtcgaagc acctaaaggt 2281 tattgttttg ttggtgctga tgttgattct gaagaattat ggattgcatc attagttggt 2341 gattcaatgc tacaaattca tggaggtacc gctttagggt ggatgacatt agaaggagaa 2401 aaatctcaaa aaactgattt acattccaaa acggctagta tattggggat ttctcgtaat 2461 gatgctaaag ttttcaatta tggaagaatc tatggagctg gagtcaaatt tgctacgaga 2521 ttattaaaac aattcaatgc taatataact gatgaagaag cagataaagt tgctcgacaa 2581 ttatatgata gtactaaagg tcgtactgca gtatccaaat atttaccact gagaatatat 2641 tatggaggca cagaatcaat catgtttaat gcattagaag ccattgcaca acaagaagaa 2701 ccgaaaactc ctgtgttagg tgctagtatt actgatgctt tgaatgttaa aaatttaaat 2761 accaaccagt atatgacatc acgagttaat tggactattc aaagttctgg agttgattat 2821 ttgcatttat taattatttc tatggaatat ttaattgaga aatatggaat tgatgcaagg 2881 ttggccatta cagttcatga tgaattacga tatttggtta aagaaaccga taaatacaag 2941 gcagcactat tattacaaat tagtaatata tggactagag ccatgttttg tgaacaatta 3001 ggtattaaag aagtaccaca atcttgtgcc tttttcagtg aagttgatat tgatcatgta 3061 ttgagaaaag aagtttctat ggattgtgtc acaccatcta atcctacacc aataccattg 3121 ggtgaatcat tgaatattgg ccaattatta ctgaaatgtc aacatggaga tatattagct 3181 gataagaata ctaaaccatt gacattaaga accacgaaat atagtcctcg acaaccgatt 3241 attaatcaat tagataagaa tttgactatt gcggagaaaa ttgctaaaat tgaactacaa 3301 acatcaattg ataaagatga atggaaaaaa aatttataca atttagccaa agtttcacgt 3361 aataaacaaa atgggaaaaa taattcaacc gagaagcctc aacgagtaat aaaaagaaaa 3421 cctattgttg aatatgattt acaagaagat aataacaaga aaagagaaat aaagtataag 3481 aaagatccac caaagtcaaa aattgcaact accaccacta ccaccaccac aaaaaaggcc 3541 agctctaaca attcgaaaac taaatccaat gtaaaagttg acgagtccaa aagtgcaatg 3601 actattttgg atttgaaaac tgatcaacaa cgccctactt ataacaatcg aaaaatagtt 3661 tatatcggaa acccccaaag caaattga